Query 033814
Match_columns 111
No_of_seqs 97 out of 99
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 10:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkga3 b.30.5.10 (A:1-250) Rh 40.0 28 0.0021 25.6 5.7 68 8-80 93-170 (250)
2 d1dkza2 b.130.1.1 (A:389-506) 39.0 13 0.00096 23.7 3.3 32 3-34 62-95 (118)
3 d2g6ba1 c.37.1.8 (A:58-227) Ra 30.9 14 0.001 23.1 2.3 25 2-28 1-25 (170)
4 d1to4a_ b.1.8.1 (A:) Cu,Zn sup 19.9 29 0.0021 22.9 2.4 21 7-28 4-25 (156)
5 d1jmxa3 b.1.18.14 (A:282-363) 15.9 54 0.0039 19.6 2.8 19 10-28 53-71 (82)
6 d1yuwa1 b.130.1.1 (A:385-543) 15.0 74 0.0054 20.8 3.6 21 5-25 70-90 (159)
7 d1nkga1 b.3.1.2 (A:251-337) Rh 14.9 52 0.0038 19.1 2.5 13 16-28 47-59 (87)
8 d1vlpa1 d.41.2.2 (A:1-149) Nic 14.2 2.6 0.00019 28.5 -4.4 24 2-28 83-106 (149)
9 d1u00a2 b.130.1.1 (A:389-503) 13.3 84 0.0061 19.4 3.3 31 4-34 60-92 (115)
10 d1wioa2 b.1.1.1 (A:179-291) CD 13.2 37 0.0027 22.2 1.4 18 14-31 25-43 (113)
No 1
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=40.00 E-value=28 Score=25.62 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=44.7
Q ss_pred EEEEeeCCCCCcCeeEEEEEEcCCCccCCCCCCCCC-CCC--c------ce-EEEeeeEEcCCCCCCCceeeeEEEEEcC
Q 033814 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPD-ELG--V------VA-SYSGQGRIADFGFRNPKWVDGELLQLNG 77 (111)
Q Consensus 8 eAvKLTGDpNVPrGevTf~A~l~~~~~~~~~g~~p~-e~~--~------~a-r~~g~G~VA~~GF~~p~~i~~~Lilis~ 77 (111)
.|+-.|.+|.| ||.-|+|+|... .+|+ -.|. +.. . +. .+.--||-...=|.+.|+||-+..++++
T Consensus 93 maT~~~aepsv--GelRfIaRL~~~-~lPn--~~p~~dvs~t~~~taIEgsDVF~vdG~TrSKfYSs~R~IDd~~~~vsg 167 (250)
T d1nkga3 93 MATYITAEPSI--GELRFIARLNSD-LLPN--EEPFGDVSTTADGTAIEGSDVFLVGSETRSKFYSSERFIDDQRHCIAG 167 (250)
T ss_dssp EEEEESSCCTT--SCEEEEEEECTT-TCCE--EETTGGGGCCTTCEEEETTTEEEETTEEEEGGGGCCBGGGCSEEEEEC
T ss_pred EEeccCCCCCc--cceeEEEecccc-cCCC--CCCCccccccCCCcEEecccEEeECCEEehhhccccceecccEEEEec
Confidence 57778999998 999999998643 2221 0010 000 0 00 1222677777788999999999999997
Q ss_pred CCC
Q 033814 78 KGM 80 (111)
Q Consensus 78 d~~ 80 (111)
+.+
T Consensus 168 ~~v 170 (250)
T d1nkga3 168 DAH 170 (250)
T ss_dssp SSC
T ss_pred CCe
Confidence 764
No 2
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=38.98 E-value=13 Score=23.66 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=22.2
Q ss_pred eeeEEEEEEeeCCCCCcCeeEEE--EEEcCCCcc
Q 033814 3 FFEYVEAVKLTGDLNVPAGEVTF--RAKIGKGSR 34 (111)
Q Consensus 3 ~~e~LeAvKLTGDpNVPrGevTf--~A~l~~~~~ 34 (111)
..+.|-...|+|.|+-|+|+..+ +-.++..+.
T Consensus 62 ~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGi 95 (118)
T d1dkza2 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGI 95 (118)
T ss_dssp GSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCC
T ss_pred CceEEEEEEEcCCccCCCCCcEEEEEEEecCCCe
Confidence 34678899999999999997333 333444444
No 3
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.85 E-value=14 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.4
Q ss_pred ceeeEEEEEEeeCCCCCcCeeEEEEEE
Q 033814 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 2 ~~~e~LeAvKLTGDpNVPrGevTf~A~ 28 (111)
+||+++--|-+-||+|| |+=|+.-.
T Consensus 1 ~~~d~~fKi~vvG~~~v--GKTsli~~ 25 (170)
T d2g6ba1 1 DFYDVAFKVMLVGDSGV--GKTCLLVR 25 (170)
T ss_dssp CCCSEEEEEEEECSTTS--SHHHHHHH
T ss_pred CCCceEEEEEEECCCCc--CHHHHHHH
Confidence 68999999999999997 66666554
No 4
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=19.89 E-value=29 Score=22.94 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=16.0
Q ss_pred EEEE-EeeCCCCCcCeeEEEEEE
Q 033814 7 VEAV-KLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 7 LeAv-KLTGDpNVPrGevTf~A~ 28 (111)
+.|| .|+|+.+| +|.|+|+-.
T Consensus 4 ~~Ava~~~g~~~v-~G~v~F~Q~ 25 (156)
T d1to4a_ 4 MKAVCVMTGTAGV-KGVVKFTQE 25 (156)
T ss_dssp CEEEEEEBCSSSC-EEEEEEEES
T ss_pred eEEEEEEcCCCCc-EEEEEEEEE
Confidence 4566 68888888 699999754
No 5
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=15.90 E-value=54 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=13.6
Q ss_pred EEeeCCCCCcCeeEEEEEE
Q 033814 10 VKLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 10 vKLTGDpNVPrGevTf~A~ 28 (111)
+|+|=++++|.|+..+++.
T Consensus 53 ~~v~i~~d~p~G~h~vrv~ 71 (82)
T d1jmxa3 53 LKARAAADAKPGQREVAVG 71 (82)
T ss_dssp EEEEECTTCCSEEEEEEET
T ss_pred EEEEECCCCCCCcEEEEEE
Confidence 4566677777777777764
No 6
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.01 E-value=74 Score=20.80 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.1
Q ss_pred eEEEEEEeeCCCCCcCeeEEE
Q 033814 5 EYVEAVKLTGDLNVPAGEVTF 25 (111)
Q Consensus 5 e~LeAvKLTGDpNVPrGevTf 25 (111)
..|--.+|+|-|.-|||++.+
T Consensus 70 ~~lg~f~l~~ip~~~~G~~~I 90 (159)
T d1yuwa1 70 NLLGKFELTGIPPAPRGVPQI 90 (159)
T ss_dssp EEEEEEEEECCCCCSTTCCCE
T ss_pred cEEEEEEECCCCcCCCCCceE
Confidence 567788999999999996533
No 7
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=14.92 E-value=52 Score=19.05 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=11.6
Q ss_pred CCCcCeeEEEEEE
Q 033814 16 LNVPAGEVTFRAK 28 (111)
Q Consensus 16 pNVPrGevTf~A~ 28 (111)
+|+|.|.++.++.
T Consensus 47 ~~l~~G~Y~l~v~ 59 (87)
T d1nkga1 47 PAMKPGTYTMVYY 59 (87)
T ss_dssp CCBCSEEEEEEEE
T ss_pred cccCCCCEEEEEE
Confidence 5899999999988
No 8
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.17 E-value=2.6 Score=28.54 Aligned_cols=24 Identities=13% Similarity=0.523 Sum_probs=19.9
Q ss_pred ceeeEEEEEEeeCCCCCcCeeEEEEEE
Q 033814 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 2 ~~~e~LeAvKLTGDpNVPrGevTf~A~ 28 (111)
+|.++|+..|.+|| |.|++++.+.
T Consensus 83 ~fl~~L~~~rF~~d---p~~~v~~~~~ 106 (149)
T d1vlpa1 83 AYIKYISSSNYKLH---PEEQISFTSE 106 (149)
T ss_dssp HHHHHHHSTTCCCC---HHHHEEEEEE
T ss_pred HHHHHHHhCCcCCC---cccceEEecc
Confidence 46778888888999 8899998886
No 9
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=13.35 E-value=84 Score=19.38 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred eeEEEEEEeeCCCCCcCeeEEEEEE--cCCCcc
Q 033814 4 FEYVEAVKLTGDLNVPAGEVTFRAK--IGKGSR 34 (111)
Q Consensus 4 ~e~LeAvKLTGDpNVPrGevTf~A~--l~~~~~ 34 (111)
.+.|-..+|+|-|..|+|+..+.+. ++..+.
T Consensus 60 N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGi 92 (115)
T d1u00a2 60 CRSLARFALRGIPALPAGGAHIRVTFQVDADGL 92 (115)
T ss_dssp SEEEEEEEECCCCCCSTTCSCEEEEEEECTTCC
T ss_pred ceEeeEEEEeCcccCccccccEEEEEEccCCce
Confidence 4678889999999999998766555 444443
No 10
>d1wioa2 b.1.1.1 (A:179-291) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.17 E-value=37 Score=22.20 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.2
Q ss_pred CCCCC-cCeeEEEEEEcCC
Q 033814 14 GDLNV-PAGEVTFRAKIGK 31 (111)
Q Consensus 14 GDpNV-PrGevTf~A~l~~ 31 (111)
+|.|. |.||.+|.|.=++
T Consensus 25 ~~e~L~~~GEL~Wqaega~ 43 (113)
T d1wioa2 25 TVEKLTGSGELWWQAERAS 43 (113)
T ss_dssp CCCSSCEEEEEEEEESSCC
T ss_pred ChhhcCCCceEEEEccCCC
Confidence 57775 9999999988443
Done!