BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033815
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/103 (93%), Positives = 102/103 (99%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI
Sbjct: 50 GGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 109
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 111
QSLLCDPNPNSPANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 110 QSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 94/99 (94%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQ
Sbjct: 51 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQ 110
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108
SLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 111 SLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 94/99 (94%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQ
Sbjct: 54 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQ 113
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108
SLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 114 SLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 152
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 172 bits (436), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 92/99 (92%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQ
Sbjct: 51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQ 110
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108
SLL +PNPNSPANS+AA+++ ENKREY +RV IVEQSW
Sbjct: 111 SLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 153 bits (386), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 84/99 (84%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
GTF+L L+F E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQ
Sbjct: 51 GTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQ 110
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108
SL DPNP SPAN EAA +F ++K +Y +RV+E VE+SW
Sbjct: 111 SLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 65 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 124
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 52 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 111
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 112 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 57 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 117 CSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQK 154
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QW P ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 57 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 116
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 117 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 154
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 146
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 55 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 114
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 115 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 49 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 146
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 65 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 124
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 162
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 53 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 112
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 113 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 46 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 105
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 106 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 143
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F ++++HPNI ++GSICLDIL++QWSP V+ +L SI
Sbjct: 52 GGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSI 111
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P + A ++ +K +YNR RE ++
Sbjct: 112 CSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 50 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 109
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ YN+ RE ++
Sbjct: 110 CSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSICLD L++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 49 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
SLLCDPNP+ P E AR++ ++ +YNR RE WT
Sbjct: 109 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE-----WT 144
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 46 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSI 105
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 106 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 50 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 109
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 110 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 65 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSI 124
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 125 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 144
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 68/98 (69%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP + F ++++HPNI ++GSI LDIL++QWSP V+ +L SI
Sbjct: 53 GGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSI 112
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P + A+++ +K +YNR RE ++
Sbjct: 113 CSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F LT+ F DYP KPP V F +R++HP I ++GSI LDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLLCDPNP+ P E AR++ ++ +YNR RE ++
Sbjct: 107 CSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L++ F DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI
Sbjct: 47 GGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
SLL DPNP+ P E A ++ ++ Y RE
Sbjct: 107 SSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 62/94 (65%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L + F DYP KPP V F ++++HPNI + G+ICLDIL++QWSP ++ +L SI
Sbjct: 67 GGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSI 126
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
SLL DPNP+ P E A ++ ++ Y++ RE
Sbjct: 127 SSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTARE 160
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILT 66
G +KLT+ F E+YP +PP RF +FHPN+Y G++CL IL + W P + IL
Sbjct: 61 GGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILL 120
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL DPN SPA +EA MF ++K EY +RVR
Sbjct: 121 GIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 71
+KLTL+F DYP KPP V+F + +HPN+ G+ICLDIL+ W+ YDV IL S+QSL
Sbjct: 58 YKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSL 117
Query: 72 LCDPNPNSPANSEAARMFSENKREYNRRVRE 102
L +PN SP N++AA M+S N+ EY + + E
Sbjct: 118 LGEPNNASPLNAQAADMWS-NQTEYKKVLHE 147
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 64/98 (65%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L++ F DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP ++ +L SI
Sbjct: 48 GGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSI 107
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
SLL D NP+ P E A ++ ++ +Y RE ++
Sbjct: 108 CSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L + F DYP K P V F+++++HPNI +G ICLDIL++QWSP ++ +L SI
Sbjct: 50 GGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSI 109
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
SLL DPNP+ P + E A + NK+++ RE
Sbjct: 110 SSLLTDPNPSDPLDPEVANVLRANKKQFEDTARE 143
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GT+KL L E YP +PP VRF+++++HPNI G ICLDIL+++WSP + +L SI
Sbjct: 47 GGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
Q+LL P P+ P +S+ A F ++K + R+
Sbjct: 107 QALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQ 140
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 6 LIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN------------ 53
L G FK L F DYP KPP ++F+S ++HPNI +G++C+ IL +
Sbjct: 47 LYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPE 106
Query: 54 -QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107
+W P++ V IL S+ S+L DPN SPAN +AA+M EN E+ ++V + V +S
Sbjct: 107 ERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GT+KL L E YP +PP VRF+++++HPNI G ICLDIL+++WSP + +L SI
Sbjct: 47 GGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
Q+LL P P+ P +S+ A F ++K + R+
Sbjct: 107 QALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQ 140
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTS 67
G F L + DYP PP ++FV++++HPNI + G+ICLD+L+N+WSP + L S
Sbjct: 69 GGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLS 128
Query: 68 IQSLLCDPNPNSPANSEAARMFSEN 92
IQ+LL DP P+ P ++E A+M+ EN
Sbjct: 129 IQALLSDPQPDDPQDAEVAKMYKEN 153
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILT 66
G + +T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+
Sbjct: 55 GGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVL 114
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 100
+Q LL PNPNSPA A R FS NK EY+++V
Sbjct: 115 GVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 58 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN SPA +EA ++ +N+ EY +RVR
Sbjct: 118 GIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILT 66
G + +T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+
Sbjct: 57 GGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVL 116
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 100
+Q LL PNPNSPA A R FS NK EY+++V
Sbjct: 117 GVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 58 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN +PA +EA ++ +N+ EY +RVR
Sbjct: 118 GIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 57 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 117 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 60 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 119
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 120 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 114
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 115 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 58 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 118 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 57 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 117 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL
Sbjct: 56 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 115
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 116 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
G+ L F E YP +PP V + ++FHPNI G++CL+IL+ WSP D+ +I+T +
Sbjct: 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLL 139
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
L +PNPN P N +AA++ E ++E+ VR
Sbjct: 140 FLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F++ L +D+P PP F++++FHPN+ A+G IC+++L+ W+ + +L +I
Sbjct: 59 GGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTI 118
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 105
+ LL PNP S N EA R+ EN EY R R + E
Sbjct: 119 KCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 155
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 56
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 54 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 113
Query: 57 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 114 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 56
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 57 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 116
Query: 57 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 117 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 167
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHP +Y G++CL IL+ W P + IL
Sbjct: 58 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILL 117
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 118 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 56
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 55 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 114
Query: 57 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 115 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 165
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWS 56
G F L F DYP PP +RF MFHPNIY DG +C+ IL +WS
Sbjct: 51 GVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWS 110
Query: 57 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107
P+ V IL S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 111 PVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 71
+KL+L+F YP PTV+F++ +HPN+ G+I LDIL+ +WS +YDV IL SIQSL
Sbjct: 79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSL 138
Query: 72 LCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 110
L +PN +SP N+ AA ++ +N + + ++E + T+
Sbjct: 139 LGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
G F+L L +DYP + P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ
Sbjct: 50 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQ 109
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
+LL PNPN P ++ A + +N++ + RE
Sbjct: 110 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
G F+L L +DYP + P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ
Sbjct: 52 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQ 111
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
+LL PNPN P ++ A + +N++ + RE
Sbjct: 112 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 144
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L SI
Sbjct: 54 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI 113
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
Q+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 114 QALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 149
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+ G++CL IL+ W P + IL
Sbjct: 58 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILL 117
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 118 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L SI
Sbjct: 49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
Q+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 109 QALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 144
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L SI
Sbjct: 52 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI 111
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
Q+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 112 QALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 147
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L SI
Sbjct: 51 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI 110
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
Q+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 111 QALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 146
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
GTFKL L E+YP P VRF+++++HPN+ G ICLDIL+++WSP + +L SI
Sbjct: 47 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI 106
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
Q+LL PNP+ P ++ A + N+ + R +WT
Sbjct: 107 QALLSAPNPDDPLANDVAEQWKTNEAQAIETAR-----AWT 142
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL
Sbjct: 55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILL 114
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 115 GIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILT 66
G FKL + F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL
Sbjct: 55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILL 114
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
IQ LL +PN PA +EA ++ +N+ EY +RVR
Sbjct: 115 GIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 49 GGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 108
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
SLL D NP P A + N+ E++R R+
Sbjct: 109 CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 142
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
G F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI
Sbjct: 94 GGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSI 153
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
SLL D NP P A + N+ E++R R+
Sbjct: 154 CSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 187
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTS 67
G F L + DYP PP ++FV++++HPNI + G+ICLDIL+++WSP + L S
Sbjct: 91 GGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS 150
Query: 68 IQSLLCDPNPNSPANSEAARMFSEN 92
IQ++L DP P P ++E A+M EN
Sbjct: 151 IQAMLADPVPTDPQDAEVAKMMIEN 175
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
G F+L L +DYP + P VRF+++++HPNI G I LD+L+ WSP + +L SIQ
Sbjct: 50 GIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQ 109
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
+LL PNPN P ++ A + +N++ + RE
Sbjct: 110 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 14/109 (12%)
Query: 6 LIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------Q 52
L G FK L F +DYP +PP ++F++ ++HPN+ +G +C+ IL +
Sbjct: 61 LYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE 120
Query: 53 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRV 100
+W PI+ V I+ S+ S+L DPN +SPAN +AA+ + E++ E+ R+V
Sbjct: 121 ERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G F + ++ +YP KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S
Sbjct: 48 GGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALIS 107
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNR 98
+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G F + ++ +YP KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S
Sbjct: 49 GGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALIS 108
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNR 98
+Q+LL P PN P ++E A+ + ++ +N+
Sbjct: 109 LQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAI 64
G FKL + E YP +PP +RF++ ++HPNI + G ICLD+L + W P ++A +
Sbjct: 50 KGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATV 109
Query: 65 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
LTSIQ L+ +PNP+ P ++ + F NK + + R+ E+
Sbjct: 110 LTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
SG F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +
Sbjct: 50 SGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGL 109
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 110
Q L +PNP P N EAA + N+R + + V+ +
Sbjct: 110 QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXRGGYIG 151
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
G F+L L +DYP + P VRF+++++HP I G I LD+L+ WSP + +L SIQ
Sbjct: 50 GIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQ 109
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
+LL PNPN P ++ A + +N++ + RE
Sbjct: 110 ALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS 67
G +K+ + + YP K P++ F++++FHPNI A G++CLD++ W+ +YD+ I S
Sbjct: 67 GGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFES 126
Query: 68 -IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 111
+ LL PNP P N +AA M+ EY ++++E +++ T +
Sbjct: 127 FLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 19/115 (16%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQW 55
G FK L+F DYP PP RF+++M+HPNIY G +C+ IL +W
Sbjct: 51 GGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERW 110
Query: 56 SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 104
+P +V IL S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 111 NPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 19/115 (16%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQW 55
G FK L+F DYP PP RF+++M+HPNIY G +C+ IL +W
Sbjct: 54 GGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERW 113
Query: 56 SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 104
+P +V IL S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 114 NPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 13/105 (12%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWS 56
G F L+F +DYP PP + F + HPNIY +G +C+ IL + +WS
Sbjct: 52 GVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWS 111
Query: 57 PIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
P+ V IL S+ S+L +PN S AN +A ++ +N+ E+ R+V+
Sbjct: 112 PVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 58/102 (56%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSI 68
SG F + + + YP+ PP V+ + ++HPNI +G++ L+IL+ W P+ + +I+ +
Sbjct: 70 SGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGL 129
Query: 69 QSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 110
Q L +PNP P N EAA + N+R + + V+ + +
Sbjct: 130 QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-T 66
G +K+ + +DYP P++ F++++ HPN+ A GS+CLD++ W+P+Y + +
Sbjct: 45 GGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEV 104
Query: 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 105
+ LL PNP+ P NS+AA + ++K Y +V+E V+
Sbjct: 105 FLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 10 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TS 67
GT+ L +Q DYP K P++ F +R+ HPN+ GS+CLD++ W+P+Y + I
Sbjct: 55 GTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVF 114
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109
+ LL PNP+ P N +AA + ++ ++ +RE V T
Sbjct: 115 LPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTS 67
G F++ + F +YP KPP + F ++++HPNI G +CL ++ + W P ++ S
Sbjct: 48 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQS 107
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
+ +L+ DP P P ++ A +S++++++ + E ++
Sbjct: 108 LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTS 67
G F++ + F +YP KPP + F ++++HPNI G +CL ++ + W P ++ S
Sbjct: 50 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQS 109
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
+ +L+ DP P P ++ A +S++++++ + E ++
Sbjct: 110 LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 148
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 11 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQN--QWSPIYDVAAILTS 67
F+LT+ FT +Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL +
Sbjct: 71 VFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLA 130
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q +L +P +P N EAAR+ +++ Y +R
Sbjct: 131 LQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 54 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 113
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q+LL P+ P ++ A + +N + + R
Sbjct: 114 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 55 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 114
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q+LL P+ P ++ A + +N + + R
Sbjct: 115 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 57 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 116
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q+LL P+ P ++ A + +N + + R
Sbjct: 117 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 70 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 129
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q+LL P+ P ++ A + +N + + R
Sbjct: 130 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS 67
G ++L ++ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S
Sbjct: 106 GGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 165
Query: 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 101
+Q+LL P+ P ++ A + +N + + R
Sbjct: 166 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 11 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQ 69
F L + F +YP KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++
Sbjct: 49 AFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN 108
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
L+ PN P + A + ++N + + E
Sbjct: 109 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 141
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 11 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQ 69
F L + F +YP KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++
Sbjct: 52 AFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN 111
Query: 70 SLLCDPNPNSPANSEAARMFSENKREYNRRVRE 102
L+ PN P + A + ++N + + E
Sbjct: 112 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 144
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICLDIL-------QNQWS 56
+G F+ + F +DYP+ PP V S F+PN+Y DG +CL IL + +W+
Sbjct: 126 NGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN 185
Query: 57 P-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARMFSENKREYNRRVRE 102
P +L S+QSL+ +P N P S +++ REY+ +R+
Sbjct: 186 PQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 236
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVA 62
G F+ + + Y PP V+ +++++HPNI G ICL +L+ W+P +
Sbjct: 60 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 63 AILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
++ + SL D N + P N EAA +K ++ +V + +++
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVA 62
G F+ + + Y PP V+ +++++HPNI G ICL +L+ W+P +
Sbjct: 60 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 63 AILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 106
++ + SL D N + P N EAA +K ++ +V + +++
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 57
S+ T++L++ F++DYP++PPTVRFV+ ++ P + +G IC ++ + W+P
Sbjct: 62 SVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI
Sbjct: 73 FQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
Query: 70 SLL 72
S+L
Sbjct: 133 SML 135
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 11 TFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
+KL + F +DYP KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI
Sbjct: 54 VYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSII 113
Query: 70 SLL 72
S+L
Sbjct: 114 SML 116
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 11 TFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQ 69
+K+ + F ++YP KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI
Sbjct: 68 VYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSII 127
Query: 70 SLL 72
S+L
Sbjct: 128 SML 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 68
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 69 QSLLCDPNPNSPANSEAARMF 89
LL +P +SP + + +
Sbjct: 127 WRLLREPVSDSPLDVDIGNII 147
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 68
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 69 QSLLCDPNPNSPANSEAARMF 89
LL +P +SP + + +
Sbjct: 127 WRLLREPVCDSPLDVDIGNII 147
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSI 68
F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+ + ++
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126
Query: 69 QSLLCDPNPNSPANSEAARMF 89
LL +P +SP + + +
Sbjct: 127 WRLLREPVCDSPLDVDIGAII 147
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 14 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 71
L F +++P PP VR VS + + G+IC+++L Q WS Y + +++ I +
Sbjct: 72 LNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISAT 131
Query: 72 LCDPNPNSPANSEAARMFSENKREYN 97
L +A F NK +Y+
Sbjct: 132 LV--------KGKARVQFGANKSQYS 149
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 14 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 71
L F +++P PP VR V + + G++C+++L Q WS Y + +++ I +
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152
Query: 72 LCDPNPNSPANSEAARMFSENKREYN 97
L +A F NK +YN
Sbjct: 153 LV--------KGKARVQFGANKNQYN 170
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI 68
+ LT+ ++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+
Sbjct: 78 YSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISL 136
Query: 69 -QSLLCDPNPNSPANSEA 85
Q +L N P +E
Sbjct: 137 RQEMLSSANKRLPQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI 68
+ LT+ ++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+
Sbjct: 74 YSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISL 132
Query: 69 -QSLLCDPNPNSPANSEAARMFSEN 92
Q +L N P +E ++S N
Sbjct: 133 RQEMLSSANKRLPQPNE-GEVYSNN 156
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 9 SGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAA 63
G + L F ++P KPP++ ++ PN + +CL I + W+P + V+
Sbjct: 60 GGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVST 115
Query: 64 ILTSIQSLLCDPNPN 78
ILT + S + + P
Sbjct: 116 ILTGLLSFMVEKGPT 130
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 67
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 78 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 136
Query: 68 IQSLL 72
++ L+
Sbjct: 137 LRRLM 141
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 67
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 88 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 146
Query: 68 IQSLL 72
++ L+
Sbjct: 147 LRRLM 151
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI----CLDILQNQWSPIYDVAAILTS 67
+ L ++ YP PP VRFV+++ + + + + +L +W Y + +L
Sbjct: 60 YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQE 118
Query: 68 IQSLL 72
++ L+
Sbjct: 119 LRRLM 123
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDI----LQNQWSPIYDVAAILTS 67
+ L ++ YP PP+VRFV+++ + N + S +D + +W Y + +L
Sbjct: 63 YSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQE 121
Query: 68 IQSLL 72
++ L+
Sbjct: 122 LRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDI----LQNQWSPIYDVAAILTS 67
+ L ++ YP PP+VRFV+++ + N + S +D + +W Y + +L
Sbjct: 57 YSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQE 115
Query: 68 IQSLL 72
++ L+
Sbjct: 116 LRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDI----LQNQWSPIYDVAAILTS 67
+ L ++ YP PP+VRFV+++ + N + S +D + +W Y + +L
Sbjct: 68 YSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQE 126
Query: 68 IQSLL 72
++ L+
Sbjct: 127 LRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDI----LQNQWSPIYDVAAILTS 67
+ L ++ YP PP+VRFV+++ + N + S +D + +W Y + +L
Sbjct: 58 YSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQE 116
Query: 68 IQSLL 72
++ L+
Sbjct: 117 LRRLM 121
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQ 69
+ L++ +YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 58 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 117
Query: 70 SLLCDP 75
+ P
Sbjct: 118 KEMATP 123
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 12 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQ 69
+ L++ +YP+ PP V F+S++ P + G + D W Y + +L ++
Sbjct: 59 YSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLR 118
Query: 70 SLLCDP 75
+ P
Sbjct: 119 KEMATP 124
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 38 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 86
P + ++C+ L + + + + L S++ L+ D NP AN+ AA
Sbjct: 135 PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAA 183
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 65 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 104
L + + L NP+ PA E R F E+ + N V +I+
Sbjct: 182 LDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKII 221
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 65 LTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 104
L + + L NP+ PA E R F E+ + N V +I+
Sbjct: 181 LDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKII 220
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 38 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 86
P + ++C+ L + + + + L S++ L+ D NP AN+ AA
Sbjct: 135 PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAA 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,447,832
Number of Sequences: 62578
Number of extensions: 123155
Number of successful extensions: 422
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 125
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)