Query 033815
Match_columns 111
No_of_seqs 140 out of 1191
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.3E-44 2.9E-49 238.8 10.5 107 3-109 41-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.7E-44 3.8E-49 242.2 11.0 107 3-109 46-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.2E-40 2.6E-45 224.8 12.3 107 3-109 42-148 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 6.9E-41 1.5E-45 216.6 10.3 108 4-111 45-152 (152)
5 PLN00172 ubiquitin conjugating 100.0 4.3E-40 9.2E-45 221.1 12.3 107 3-109 41-147 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 9.3E-40 2E-44 216.7 11.0 107 4-110 47-166 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 9.5E-39 2.1E-43 217.3 9.8 107 4-110 47-154 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 1.2E-37 2.6E-42 204.0 10.7 106 4-109 50-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.2E-36 4.9E-41 201.1 10.9 102 3-104 38-140 (140)
10 KOG0420 Ubiquitin-protein liga 100.0 3.6E-36 7.7E-41 202.2 8.3 104 3-106 69-172 (184)
11 smart00212 UBCc Ubiquitin-conj 100.0 3E-35 6.6E-40 196.8 12.3 106 3-108 39-145 (145)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 4.7E-35 1E-39 195.0 10.3 102 3-104 39-141 (141)
13 KOG0416 Ubiquitin-protein liga 100.0 6.6E-35 1.4E-39 195.9 7.9 107 3-109 40-148 (189)
14 KOG0422 Ubiquitin-protein liga 100.0 6.2E-34 1.4E-38 185.7 10.5 106 4-109 43-149 (153)
15 KOG0421 Ubiquitin-protein liga 100.0 6E-33 1.3E-37 182.2 7.4 104 3-107 69-172 (175)
16 KOG0426 Ubiquitin-protein liga 100.0 2.2E-32 4.8E-37 177.3 10.0 105 4-108 46-163 (165)
17 KOG0423 Ubiquitin-protein liga 100.0 3.1E-29 6.6E-34 169.3 6.0 106 4-109 51-156 (223)
18 KOG0429 Ubiquitin-conjugating 99.9 8.1E-23 1.8E-27 142.6 9.8 107 4-110 59-171 (258)
19 KOG0427 Ubiquitin conjugating 99.8 1.1E-20 2.3E-25 122.8 6.7 79 3-81 54-134 (161)
20 KOG0894 Ubiquitin-protein liga 99.8 7.8E-18 1.7E-22 117.4 11.0 70 4-77 46-120 (244)
21 KOG0895 Ubiquitin-conjugating 99.5 9.7E-15 2.1E-19 119.8 5.9 77 4-80 892-979 (1101)
22 KOG0428 Non-canonical ubiquiti 99.4 4.8E-13 1E-17 95.3 6.3 68 4-73 51-121 (314)
23 KOG0895 Ubiquitin-conjugating 99.1 1.1E-10 2.4E-15 96.4 6.1 73 3-75 322-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 3.6E-10 7.7E-15 73.9 5.4 70 4-73 50-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 8.9E-09 1.9E-13 68.0 7.7 67 8-74 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 1.8E-08 4E-13 64.3 6.3 89 14-103 15-109 (122)
27 PF05743 UEV: UEV domain; Int 98.7 2.6E-08 5.7E-13 64.9 4.7 68 6-74 42-117 (121)
28 KOG2391 Vacuolar sorting prote 98.1 9.2E-06 2E-10 60.8 6.0 71 5-76 61-139 (365)
29 PF14457 Prok-E2_A: Prokaryoti 95.7 0.024 5.1E-07 38.8 4.6 60 14-73 57-125 (162)
30 PF08694 UFC1: Ubiquitin-fold 95.5 0.016 3.5E-07 38.8 3.1 54 12-65 77-135 (161)
31 PF05773 RWD: RWD domain; Int 95.0 0.032 6.9E-07 34.7 3.3 29 6-34 45-73 (113)
32 PF14462 Prok-E2_E: Prokaryoti 94.9 0.16 3.6E-06 33.1 6.4 67 5-73 37-120 (122)
33 smart00591 RWD domain in RING 93.9 0.078 1.7E-06 32.7 3.1 24 11-34 42-65 (107)
34 PF14460 Prok-E2_D: Prokaryoti 91.3 0.34 7.3E-06 33.4 3.7 46 32-80 89-137 (175)
35 KOG3357 Uncharacterized conser 88.3 0.69 1.5E-05 30.6 3.2 53 12-64 80-137 (167)
36 TIGR03737 PRTRC_B PRTRC system 85.8 1.5 3.1E-05 31.7 4.0 44 33-80 131-178 (228)
37 PF06113 BRE: Brain and reprod 81.3 5.1 0.00011 30.5 5.4 59 6-70 61-122 (333)
38 PF09765 WD-3: WD-repeat regio 76.0 1.6 3.5E-05 32.5 1.4 48 11-72 138-186 (291)
39 KOG4018 Uncharacterized conser 68.8 4.8 0.0001 28.8 2.4 20 11-30 50-69 (215)
40 KOG0177 20S proteasome, regula 62.7 2.1 4.5E-05 30.1 -0.4 62 12-73 98-165 (200)
41 cd00421 intradiol_dioxygenase 62.2 11 0.00024 25.0 3.1 25 8-32 64-89 (146)
42 PF01175 Urocanase: Urocanase; 61.9 12 0.00027 30.2 3.7 30 82-111 271-300 (546)
43 PRK05414 urocanate hydratase; 59.2 15 0.00032 29.8 3.7 30 82-111 281-310 (556)
44 TIGR01228 hutU urocanate hydra 59.2 15 0.00032 29.7 3.7 30 82-111 272-301 (545)
45 COG2987 HutU Urocanate hydrata 59.0 30 0.00065 27.8 5.3 29 83-111 282-310 (561)
46 cd03457 intradiol_dioxygenase_ 57.9 14 0.0003 25.8 3.1 25 8-32 85-109 (188)
47 PF11333 DUF3135: Protein of u 57.0 29 0.00064 21.0 4.0 26 84-109 8-33 (83)
48 KOG1047 Bifunctional leukotrie 52.1 15 0.00032 30.1 2.7 30 4-34 247-279 (613)
49 PF12018 DUF3508: Domain of un 50.3 30 0.00065 25.5 4.0 29 81-109 239-267 (281)
50 cd03459 3,4-PCD Protocatechuat 49.6 23 0.00051 23.9 3.1 25 8-32 71-100 (158)
51 PF06113 BRE: Brain and reprod 49.2 21 0.00045 27.3 3.0 24 11-34 307-330 (333)
52 KOG0309 Conserved WD40 repeat- 46.9 20 0.00044 30.6 2.8 26 9-34 464-491 (1081)
53 PF02563 Poly_export: Polysacc 44.6 40 0.00087 19.8 3.3 36 39-74 34-69 (82)
54 smart00803 TAF TATA box bindin 43.9 62 0.0013 18.5 3.9 31 80-110 19-49 (65)
55 cd05845 Ig2_L1-CAM_like Second 41.7 56 0.0012 20.1 3.7 26 7-34 16-41 (95)
56 cd07981 TAF12 TATA Binding Pro 40.1 75 0.0016 18.4 5.1 43 68-110 7-49 (72)
57 KOG0662 Cyclin-dependent kinas 36.5 31 0.00067 24.7 2.1 54 24-77 167-224 (292)
58 TIGR01239 galT_2 galactose-1-p 35.3 38 0.00082 27.2 2.6 26 7-41 356-386 (489)
59 TIGR02423 protocat_alph protoc 32.5 58 0.0013 22.8 3.0 25 8-32 95-124 (193)
60 PF12652 CotJB: CotJB protein; 32.1 1.2E+02 0.0025 18.2 4.1 30 78-107 24-53 (78)
61 cd01145 TroA_c Periplasmic bin 31.7 1.1E+02 0.0025 21.0 4.4 47 55-107 111-157 (203)
62 cd03463 3,4-PCD_alpha Protocat 30.6 67 0.0014 22.4 3.0 25 8-32 91-120 (185)
63 KOG3203 Mitochondrial/chloropl 30.3 29 0.00064 23.7 1.1 15 33-48 49-63 (165)
64 PRK05270 galactose-1-phosphate 29.5 56 0.0012 26.4 2.7 26 7-41 359-389 (493)
65 PF13950 Epimerase_Csub: UDP-g 28.9 63 0.0014 18.2 2.2 18 54-71 37-54 (62)
66 PF09280 XPC-binding: XPC-bind 28.8 1.1E+02 0.0023 17.2 3.2 22 80-101 33-54 (59)
67 COG4468 GalT Galactose-1-phosp 28.4 57 0.0012 25.9 2.5 23 9-40 363-390 (503)
68 PF14455 Metal_CEHH: Predicted 26.7 70 0.0015 21.9 2.5 21 13-34 56-76 (177)
69 KOG4445 Uncharacterized conser 26.3 85 0.0018 24.0 3.1 24 11-34 46-69 (368)
70 COG1225 Bcp Peroxiredoxin [Pos 26.1 1E+02 0.0022 20.9 3.2 32 38-71 124-155 (157)
71 PF06675 DUF1177: Protein of u 26.0 50 0.0011 24.4 1.8 27 3-29 181-207 (276)
72 PF00779 BTK: BTK motif; Inte 26.0 26 0.00057 17.3 0.3 16 35-50 2-18 (32)
73 PF10346 Con-6: Conidiation pr 25.9 1E+02 0.0023 15.7 4.0 18 62-79 4-21 (36)
74 PF03847 TFIID_20kDa: Transcri 25.8 1.4E+02 0.0031 17.2 5.0 43 67-109 4-46 (68)
75 PF03037 KMP11: Kinetoplastid 25.7 73 0.0016 19.0 2.1 25 81-109 40-64 (90)
76 TIGR02439 catechol_proteo cate 25.3 90 0.0019 23.3 3.0 16 8-23 179-194 (285)
77 cd01019 ZnuA Zinc binding prot 23.7 1.8E+02 0.0039 21.2 4.4 48 55-108 124-171 (286)
78 KOG4278 Protein tyrosine kinas 23.2 44 0.00095 28.5 1.1 42 7-48 194-239 (1157)
79 PRK14052 effector protein; Pro 22.9 18 0.00039 27.7 -1.0 32 36-67 347-385 (387)
80 cd03461 1,2-HQD Hydroxyquinol 22.6 1.1E+02 0.0023 22.8 3.0 16 8-23 171-186 (277)
81 KOG3696 Aspartyl beta-hydroxyl 22.5 46 0.00099 25.4 1.0 21 23-43 306-326 (334)
82 cd01018 ZntC Metal binding pro 22.4 2.1E+02 0.0045 20.6 4.5 46 55-106 115-160 (266)
83 cd01020 TroA_b Metal binding p 21.7 2.2E+02 0.0048 20.4 4.5 47 55-107 98-144 (264)
84 cd01016 TroA Metal binding pro 21.6 2.1E+02 0.0045 20.8 4.4 46 55-106 104-149 (276)
85 PRK00945 acetyl-CoA decarbonyl 21.3 2.6E+02 0.0056 19.2 4.5 32 10-41 107-149 (171)
86 TIGR02438 catachol_actin catec 21.2 1.2E+02 0.0026 22.7 3.0 16 8-23 183-198 (281)
87 COG2819 Predicted hydrolase of 21.0 1.4E+02 0.003 22.2 3.3 30 5-34 16-47 (264)
88 PF11745 DUF3304: Protein of u 20.9 47 0.001 21.2 0.7 20 43-62 50-69 (118)
89 cd03460 1,2-CTD Catechol 1,2 d 20.9 1.2E+02 0.0027 22.6 3.0 16 8-23 175-190 (282)
90 KOG4064 Cysteine dioxygenase C 20.7 2.3E+02 0.0049 19.5 4.0 53 55-107 7-60 (196)
91 COG4079 Uncharacterized protei 20.6 2.9E+02 0.0063 20.5 4.8 22 52-73 139-160 (293)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=238.81 Aligned_cols=107 Identities=42% Similarity=0.817 Sum_probs=105.4
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
++||||||+|++.|.||++||++||+|+|.|+||||||+..|+||+|+|+.+|+|+++|..||.+|++||.+|++++|++
T Consensus 41 ~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~ 120 (148)
T KOG0417|consen 41 PGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLV 120 (148)
T ss_pred CCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.++|.+|+.|+++|.++||+|+++++.
T Consensus 121 ~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 121 PDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=242.24 Aligned_cols=107 Identities=51% Similarity=0.957 Sum_probs=105.0
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
+.||||||+|++.|.||++||++||+|+|.|+||||||+++|+||+++|+++|+|++++.+||.+|+++|.+||.++|+|
T Consensus 46 ~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln 125 (153)
T COG5078 46 PDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLN 125 (153)
T ss_pred CCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.|||++|++|+++|.++||++++++++
T Consensus 126 ~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 126 TEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred hHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999875
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-40 Score=224.82 Aligned_cols=107 Identities=37% Similarity=0.722 Sum_probs=104.5
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
.+|||+||+|+++|.||++||++||+|+|.|+||||||+++|.||+++|+++|+|++++.+||.+|+++|.+|++++|+|
T Consensus 42 ~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln 121 (152)
T PTZ00390 42 DGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLD 121 (152)
T ss_pred CCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.+||++|++|+++|.++|++|++++++
T Consensus 122 ~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 122 TSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999875
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-41 Score=216.59 Aligned_cols=108 Identities=81% Similarity=1.267 Sum_probs=105.6
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcCH
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 83 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~ 83 (111)
.|||+||+|++.|.|+++||.+||.|+|++.+|||||+.+|.||+|+|..+|+|.+++..||.+||+||.+|++++|+|.
T Consensus 45 ~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~ 124 (152)
T KOG0419|consen 45 DTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANS 124 (152)
T ss_pred CCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 033815 84 EAARMFSENKREYNRRVREIVEQSWTAD 111 (111)
Q Consensus 84 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (111)
+||++|++|+++|.++|++.+.+++.++
T Consensus 125 eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 125 EAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998753
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.3e-40 Score=221.11 Aligned_cols=107 Identities=48% Similarity=0.845 Sum_probs=104.1
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
..|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|++.|+|++++++||.+|+++|.+|++++|+|
T Consensus 41 ~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n 120 (147)
T PLN00172 41 SDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLV 120 (147)
T ss_pred CCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.+||++|.+|+++|.++|++|+++++.
T Consensus 121 ~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 121 PEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998863
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-40 Score=216.67 Aligned_cols=107 Identities=46% Similarity=0.848 Sum_probs=103.2
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcc-------------ccCCCcccHHHHHHHHHH
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQS 70 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ 70 (111)
+|+|+||.|+..+.||.+||.+||+++|.|+||||||+++|++|+++|. +.|.|..|+++||++|.+
T Consensus 47 dTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIs 126 (171)
T KOG0425|consen 47 DTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIIS 126 (171)
T ss_pred CccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHH
Confidence 6899999999999999999999999999999999999999999999993 469999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 033815 71 LLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 110 (111)
Q Consensus 71 ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (111)
||.+||..+|+|.|||+.|++|+++|.++|++|+.++++.
T Consensus 127 mL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 127 MLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQEE 166 (171)
T ss_pred HHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-39 Score=217.34 Aligned_cols=107 Identities=33% Similarity=0.721 Sum_probs=104.0
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeC-CCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
+||||||+|.++|++|++|||+||+|+|.|+||||||++ +|.||+|++++.|.+++|++.+|.+||++|..|++.+|.+
T Consensus 47 ~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqD 126 (200)
T KOG0418|consen 47 DTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQD 126 (200)
T ss_pred CCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHH
Confidence 699999999999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWTA 110 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (111)
..+|++|.+|++.|.+.||.|+..+++.
T Consensus 127 avva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 127 AVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998863
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=204.05 Aligned_cols=106 Identities=39% Similarity=0.786 Sum_probs=103.4
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcccc--CCCcccHHHHHHHHHHhhcCCCCCCCc
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPA 81 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~ 81 (111)
.|+||||.|++++.||++||.+||+++|.++.|||||+++|.|||++|.++ |+|+.||.+||.+||.||.+||+.+|+
T Consensus 50 ~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pA 129 (158)
T KOG0424|consen 50 GTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPA 129 (158)
T ss_pred CCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCch
Confidence 689999999999999999999999999999999999999999999999876 999999999999999999999999999
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 82 NSEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
|.||...|..|+.+|.++||.+++++++
T Consensus 130 q~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 130 QTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999875
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.2e-36 Score=201.13 Aligned_cols=102 Identities=46% Similarity=0.907 Sum_probs=93.4
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcccc-CCCcccHHHHHHHHHHhhcCCCCCCCc
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPA 81 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~ 81 (111)
.+|||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||+++|..+ |+|++++.+||.+|+++|.+|+.++|+
T Consensus 38 ~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~ 117 (140)
T PF00179_consen 38 PGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPL 117 (140)
T ss_dssp TTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTS
T ss_pred CccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcc
Confidence 5899999999999999999999999999999999999999999999999854 999999999999999999999999999
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHH
Q 033815 82 NSEAARMFSENKREYNRRVREIV 104 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~ 104 (111)
|.+|+++|++|+++|.++||+|.
T Consensus 118 n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 118 NEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp SHHHHHHHHHCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999999999999999999984
No 10
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-36 Score=202.22 Aligned_cols=104 Identities=32% Similarity=0.759 Sum_probs=101.0
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
+.|.|.||.|.|.+.+|+.||+.||+|.|+|+|||||||.+|.||+++|+++|+|..++.+|+.+|+.||.+|+++||+|
T Consensus 69 dEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN 148 (184)
T KOG0420|consen 69 DEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLN 148 (184)
T ss_pred CcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHH
Q 033815 83 SEAARMFSENKREYNRRVREIVEQ 106 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~ 106 (111)
.+||..+++|++.|..+||....-
T Consensus 149 ~eAA~~l~~n~e~F~~~Vr~~m~g 172 (184)
T KOG0420|consen 149 KEAAAVLKSNREGFENNVRRAMSG 172 (184)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3e-35 Score=196.78 Aligned_cols=106 Identities=43% Similarity=0.877 Sum_probs=102.9
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcc-ccCCCcccHHHHHHHHHHhhcCCCCCCCc
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPA 81 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~ 81 (111)
+.|+|+||+|+++|.||++||.+||+|+|.++++||||+++|.||++.+. +.|+|++++.++|.+|+++|.+|+.++|+
T Consensus 39 ~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~ 118 (145)
T smart00212 39 PGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPL 118 (145)
T ss_pred CCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence 57999999999999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 033815 82 NSEAARMFSENKREYNRRVREIVEQSW 108 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~~~~~ 108 (111)
|.+|+++|++|++.|.++|+++++++.
T Consensus 119 n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 119 NADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999863
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=4.7e-35 Score=195.04 Aligned_cols=102 Identities=47% Similarity=0.952 Sum_probs=98.8
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcccc-CCCcccHHHHHHHHHHhhcCCCCCCCc
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPA 81 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~ 81 (111)
..|+|+||+|+++|.||++||++||+|+|.++++||||+.+|.||++++..+ |+|++++.+||.+|+++|.+|+.++|+
T Consensus 39 ~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~ 118 (141)
T cd00195 39 PDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPL 118 (141)
T ss_pred CCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCch
Confidence 3799999999999999999999999999999999999999999999999877 999999999999999999999999999
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHH
Q 033815 82 NSEAARMFSENKREYNRRVREIV 104 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~ 104 (111)
|.+||.+|++|+++|.++|++|+
T Consensus 119 n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 119 NAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred hHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999999999999999874
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=195.86 Aligned_cols=107 Identities=36% Similarity=0.791 Sum_probs=102.5
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeC-CCcEeecCccccCCCcccHHHHHHH-HHHhhcCCCCCCC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSP 80 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~-~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p 80 (111)
..|||+||+++++|.+|++||++.|.|.|+++||||||++ +|.||++.++..|+|.+.+..|+.. |-.||..||+.+|
T Consensus 40 ~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DP 119 (189)
T KOG0416|consen 40 KDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDP 119 (189)
T ss_pred CCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence 4799999999999999999999999999999999999996 8999999999999999999999876 6789999999999
Q ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 81 ANSEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 81 ~n~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
+|-+||.+|.+++++|.++||++++++|+
T Consensus 120 LN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 120 LNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred cccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999985
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-34 Score=185.72 Aligned_cols=106 Identities=25% Similarity=0.662 Sum_probs=102.1
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcc-ccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
.-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.|.+|++++. +.|.|++.+.+||+.|.+++.+|++++|++
T Consensus 43 ~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr 122 (153)
T KOG0422|consen 43 KPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLR 122 (153)
T ss_pred CCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccch
Confidence 3589999999999999999999999999999999999999999999996 569999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.|+|.+|.+|+..|.++|.++++|+.+
T Consensus 123 ~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 123 IDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred hhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999875
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6e-33 Score=182.18 Aligned_cols=104 Identities=44% Similarity=0.843 Sum_probs=99.9
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 82 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n 82 (111)
++|+|+|-.|++.+.||.+||++||+|.|.|+.||||||-.|.||+|+|++.|+..++++.||.+||+||-+||.++|+|
T Consensus 69 ~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLN 148 (175)
T KOG0421|consen 69 KDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLN 148 (175)
T ss_pred CCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHH
Q 033815 83 SEAARMFSENKREYNRRVREIVEQS 107 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~ 107 (111)
..||.++. |+++|++.+.++-++.
T Consensus 149 aqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 149 AQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred hHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 99999999 9999999998876653
No 16
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=177.34 Aligned_cols=105 Identities=40% Similarity=0.819 Sum_probs=101.2
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcc-------------ccCCCcccHHHHHHHHHH
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQS 70 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ 70 (111)
.|+|+||+|..++.||.+||.+||+++|...+|||||+.+|++|+++|. ++|+|..+++.||.++.+
T Consensus 46 ~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~S 125 (165)
T KOG0426|consen 46 DTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVS 125 (165)
T ss_pred CCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999983 579999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 033815 71 LLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108 (111)
Q Consensus 71 ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~~ 108 (111)
+|.+||.++++|.+|+.++++|+++|.+.|+..+.|..
T Consensus 126 MLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 126 MLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred HHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998864
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=169.26 Aligned_cols=106 Identities=37% Similarity=0.738 Sum_probs=102.6
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCCcCH
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 83 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~ 83 (111)
.|||++|+|+..+.+..+||.+||+-.|+|+||||||-.+|.||...|+.+|+|..+|+.||..|+.+|..|++++.+|+
T Consensus 51 GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNE 130 (223)
T KOG0423|consen 51 GTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNE 130 (223)
T ss_pred CCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 84 EAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 84 ~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
+|.++..++.++|.+.||-++.-+++
T Consensus 131 eAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 131 EAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998876553
No 18
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.1e-23 Score=142.64 Aligned_cols=107 Identities=25% Similarity=0.494 Sum_probs=97.8
Q ss_pred cCCCCCCEEEEEEEeCCCCCC--CCCcceeecccccceeeC-CCcEeecCccccCCCc-ccHHHHHHHHHHhhcCCCCCC
Q 033815 4 ILLIPSGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNS 79 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~--~pP~i~f~t~i~HpnV~~-~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~p~~~~ 79 (111)
-|.|.||+|+|+|.+|++||. +.|+|.|.+.++||+|++ ++.+|+......|+.. .+|+++|..+|.+|++|+-..
T Consensus 59 ~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si 138 (258)
T KOG0429|consen 59 KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSI 138 (258)
T ss_pred cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccch
Confidence 378999999999999999995 689999999999999997 7999998888889985 679999999999999998865
Q ss_pred C--cCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 033815 80 P--ANSEAARMFSENKREYNRRVREIVEQSWTA 110 (111)
Q Consensus 80 p--~n~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (111)
+ .|++|+.+|++++++|.++|+++++.+-..
T Consensus 139 ~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 139 DKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred hhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5 699999999999999999999999987643
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=122.80 Aligned_cols=79 Identities=39% Similarity=0.769 Sum_probs=71.8
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeeccc-ccceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCC-CCCCC
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP-NPNSP 80 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i-~HpnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p-~~~~p 80 (111)
++|.|+|.+|.+.++||+.||+..|.|.|..++ .||+|++||.||+++|.++|+|++++.+|+.+|.++|++- .-..|
T Consensus 54 ~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP 133 (161)
T KOG0427|consen 54 PGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRP 133 (161)
T ss_pred CceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCC
Confidence 689999999999999999999999999999774 7999999999999999999999999999999999999863 33344
Q ss_pred c
Q 033815 81 A 81 (111)
Q Consensus 81 ~ 81 (111)
.
T Consensus 134 ~ 134 (161)
T KOG0427|consen 134 T 134 (161)
T ss_pred C
Confidence 3
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.8e-18 Score=117.39 Aligned_cols=70 Identities=30% Similarity=0.646 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecc--cccceeeCCCcEeecCcc---ccCCCcccHHHHHHHHHHhhcCCCC
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 77 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~--i~HpnV~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~ 77 (111)
+|||+||.|+.+|.||++||++||.|+++|+ .|.+| -++||++.+ +.|+|++++..||.+|.+.|.+..+
T Consensus 46 dTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 46 DTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred CCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 6999999999999999999999999999997 45555 799998874 6799999999999999999987554
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.7e-15 Score=119.76 Aligned_cols=77 Identities=36% Similarity=0.740 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecc--cccceeeCCCcEeecCcc-------ccCCCcccHHHHHHHHHHhhcC
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYADGSICLDILQ-------NQWSPIYDVAAILTSIQSLLCD 74 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~--i~HpnV~~~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~ 74 (111)
.|||..|.|.|+|.||++||.+||.+...+. .++||.+++|++|+++|+ +-|+|+.++.++|.+||+|+-+
T Consensus 892 ~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 892 GTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred CCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 6999999999999999999999999999875 689999999999999994 4499999999999999998764
Q ss_pred --CCCCCC
Q 033815 75 --PNPNSP 80 (111)
Q Consensus 75 --p~~~~p 80 (111)
|.++++
T Consensus 972 ~~py~ne~ 979 (1101)
T KOG0895|consen 972 EEPYFNEA 979 (1101)
T ss_pred cccccCcc
Confidence 555544
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.8e-13 Score=95.31 Aligned_cols=68 Identities=21% Similarity=0.460 Sum_probs=57.9
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCcc---ccCCCcccHHHHHHHHHHhhc
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLC 73 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~ 73 (111)
+|-||||+|+.+|.||.+||++||.+..+|+--. ..-+.+||+++.+ +.|.|+++++..|..|..+|-
T Consensus 51 dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR--FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 51 DTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR--FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred CCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc--eeeCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 5779999999999999999999999999987222 2234689999885 669999999999999988775
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-10 Score=96.42 Aligned_cols=73 Identities=33% Similarity=0.760 Sum_probs=66.4
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcceeecc---cccceeeCCCcEeecCcc-------ccCCCc-ccHHHHHHHHHHh
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPNIYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSL 71 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~---i~HpnV~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~l 71 (111)
+.|||++|+|.|+|.+|..||..||.+.++|. .+.||.+.+|+||+++|. +.|+|. .++.++|..||.+
T Consensus 322 ~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~L 401 (1101)
T KOG0895|consen 322 DGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGL 401 (1101)
T ss_pred CCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhh
Confidence 57999999999999999999999999999976 789999999999999883 569997 7899999999999
Q ss_pred hcCC
Q 033815 72 LCDP 75 (111)
Q Consensus 72 l~~p 75 (111)
+.+.
T Consensus 402 i~~e 405 (1101)
T KOG0895|consen 402 ILNE 405 (1101)
T ss_pred hccc
Confidence 8754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.6e-10 Score=73.93 Aligned_cols=70 Identities=19% Similarity=0.443 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeC-CCcEeecCc--cccCCCcccHHHHHHHHHHhhc
Q 033815 4 ILLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDIL--QNQWSPIYDVAAILTSIQSLLC 73 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~-~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~ 73 (111)
-|.||+.+|.++|.+.++||..||+++|.+++.-+.|+. +|.+.-..+ -..|...++++.+|..++.++.
T Consensus 50 rT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 50 RTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred CcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 488999999999999999999999999999999999985 677765333 2679999999999999987655
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.91 E-value=8.9e-09 Score=68.01 Aligned_cols=67 Identities=33% Similarity=0.652 Sum_probs=59.3
Q ss_pred CCCEEEEEEEeCCCCCCCCCcceeeccc---ccceeeCCCcEee---cCccccCCCcccHHHHHHHHHHhhcC
Q 033815 8 PSGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 74 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP~~pP~i~f~t~i---~HpnV~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 74 (111)
.|+.+.++|.+|+.||..||.|....+. +-|||+.+|.+|+ ...-..|.|...+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999888654 6899999999999 55556799999999999999998873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.8e-08 Score=64.28 Aligned_cols=89 Identities=24% Similarity=0.520 Sum_probs=64.8
Q ss_pred EEEEeCCCCCCCCCcceeeccc-ccceeeCCCcEeecCccc-cCCCcccHHHHHHHHHHhhcCCCC--CCCcCHHHHHHH
Q 033815 14 LTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQN-QWSPIYDVAAILTSIQSLLCDPNP--NSPANSEAARMF 89 (111)
Q Consensus 14 ~~i~~p~~YP~~pP~i~f~t~i-~HpnV~~~G~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~--~~p~n~~~~~~~ 89 (111)
+.+.|+++||+.||.+|...|. -..-|-++|.||+.++.. .|+.+++++.+++++.+.+..... ..+++.+.. +|
T Consensus 15 l~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~~ 93 (122)
T KOG0897|consen 15 LLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-LY 93 (122)
T ss_pred eeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-Hh
Confidence 5677899999999999877653 334455689999999975 599999999999999999987654 456655533 55
Q ss_pred HH--CHHHHHHHHHHH
Q 033815 90 SE--NKREYNRRVREI 103 (111)
Q Consensus 90 ~~--~~~~f~~~~~~~ 103 (111)
.. -.+.|+..++..
T Consensus 94 s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 94 SHSQAQQSFKSLVQIH 109 (122)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 43 334455555443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.70 E-value=2.6e-08 Score=64.90 Aligned_cols=68 Identities=19% Similarity=0.494 Sum_probs=48.7
Q ss_pred CCCCCEEE--EEEEeCCCCCCCCCcceeeccc-----ccceeeCCCcEeecCccccCCC-cccHHHHHHHHHHhhcC
Q 033815 6 LIPSGTFK--LTLQFTEDYPNKPPTVRFVSRM-----FHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD 74 (111)
Q Consensus 6 ~y~gg~f~--~~i~~p~~YP~~pP~i~f~t~i-----~HpnV~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 74 (111)
.|.|..|. +.|.+|.+||.+||.+...... -+.+||.+|+|.++.| .+|.+ ..++.+++..|...|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhH
Confidence 37788884 6777899999999999776432 1349999999999888 67887 77899999999988863
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=9.2e-06 Score=60.80 Aligned_cols=71 Identities=17% Similarity=0.438 Sum_probs=57.7
Q ss_pred CCCCCCEEE--EEEEeCCCCCCCCCcceeecc-----cccceeeCCCcEeecCccccCCC-cccHHHHHHHHHHhhcCCC
Q 033815 5 LLIPSGTFK--LTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCDPN 76 (111)
Q Consensus 5 t~y~gg~f~--~~i~~p~~YP~~pP~i~f~t~-----i~HpnV~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~ 76 (111)
++|.|..|. +.|.+.+.||..||.+..... -.|-+||.+|.|.|+.| ..|.+ +.++..++..|.+.|.++.
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHhcCCC
Confidence 578888886 566689999999999865522 23899999999999999 57876 6789999999999888644
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.70 E-value=0.024 Score=38.76 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCCCcceeeccc---ccceeeCC-----CcEeecCcc-ccCCCcccHHHHHHHHHHhhc
Q 033815 14 LTLQFTEDYPNKPPTVRFVSRM---FHPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLC 73 (111)
Q Consensus 14 ~~i~~p~~YP~~pP~i~f~t~i---~HpnV~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~ 73 (111)
+.|.++.+||..+|.+.+.-+. .+||++.. ..+|+.--. .+|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 5688999999999987666432 35788754 679985443 459999999999999988765
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.53 E-value=0.016 Score=38.76 Aligned_cols=54 Identities=26% Similarity=0.553 Sum_probs=23.6
Q ss_pred EEEEEEeCCCCCCCCCcceeeccc-ccceeeCCCcEeecCcc-ccC---CCcccHHHHH
Q 033815 12 FKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 65 (111)
Q Consensus 12 f~~~i~~p~~YP~~pP~i~f~t~i-~HpnV~~~G~icl~~l~-~~W---~p~~~i~~il 65 (111)
|.+++.+|..||..||.|....-- --.-.+..|+||++.-. .-| .|.++|...|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 445556699999999999764210 01123347899997653 346 4467776654
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.04 E-value=0.032 Score=34.71 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCcceeecc
Q 033815 6 LIPSGTFKLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 6 ~y~gg~f~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
.-....+.+.+.||++||..+|.|...+.
T Consensus 45 ~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 45 SSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp TTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 34556788999999999999999976655
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.93 E-value=0.16 Score=33.12 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=44.4
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCCcceeecccccceeeCCCcE--eecCc--------------cccCCCcc-cHHHHHHH
Q 033815 5 LLIPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CLDIL--------------QNQWSPIY-DVAAILTS 67 (111)
Q Consensus 5 t~y~gg~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~i--cl~~l--------------~~~W~p~~-~i~~il~~ 67 (111)
|.|.+..=.+-|.+|..||..+|.+.+..+-.... ..|.| |-+.. ...|+|.. ++.+.|..
T Consensus 37 G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~ 114 (122)
T PF14462_consen 37 GKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLAR 114 (122)
T ss_pred CccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHHH
Confidence 45888888999999999999999887765532211 01223 22111 23488864 58888888
Q ss_pred HHHhhc
Q 033815 68 IQSLLC 73 (111)
Q Consensus 68 i~~ll~ 73 (111)
|...|.
T Consensus 115 v~~~L~ 120 (122)
T PF14462_consen 115 VEHALA 120 (122)
T ss_pred HHHHHh
Confidence 887663
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.85 E-value=0.078 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.736 Sum_probs=20.0
Q ss_pred EEEEEEEeCCCCCCCCCcceeecc
Q 033815 11 TFKLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 11 ~f~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
.+.+.+.+|++||..+|.+.+.+.
T Consensus 42 ~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 42 SLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred EEEEEEECCCCCCCCCCCeEEECC
Confidence 478889999999999999877653
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=91.30 E-value=0.34 Score=33.35 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=28.6
Q ss_pred eccccc---ceeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcCCCCCCC
Q 033815 32 VSRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 80 (111)
Q Consensus 32 ~t~i~H---pnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p 80 (111)
.|+.|| +||..+|+||..... .|.......+..+...|.+-...++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 355666 589999999997642 3444444456666655554445444
No 35
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.35 E-value=0.69 Score=30.62 Aligned_cols=53 Identities=21% Similarity=0.540 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCCCCCCcceeeccc-ccceeeCCCcEeec-CccccCCC---cccHHHH
Q 033815 12 FKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLD-ILQNQWSP---IYDVAAI 64 (111)
Q Consensus 12 f~~~i~~p~~YP~~pP~i~f~t~i-~HpnV~~~G~icl~-~l~~~W~p---~~~i~~i 64 (111)
|.+++.+|-.||-..|.+...--- --.-.+..|.||+. ..+.-|.. ..++...
T Consensus 80 fdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 80 FDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred eeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 445556799999999998653110 01112346899994 44455754 4555544
No 36
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=85.83 E-value=1.5 Score=31.71 Aligned_cols=44 Identities=18% Similarity=0.438 Sum_probs=30.0
Q ss_pred ccccc---ceeeCCCcEeecCccccCCCc-ccHHHHHHHHHHhhcCCCCCCC
Q 033815 33 SRMFH---PNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP 80 (111)
Q Consensus 33 t~i~H---pnV~~~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~p~~~~p 80 (111)
|+.|| +||+++|+||..... .|. .++.+ +......|.+-.+.++
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 34555 488899999997663 554 45666 7778777776555444
No 37
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=81.29 E-value=5.1 Score=30.52 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=41.4
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCcceee-cccccceeeCCCcEeecCccccCCCc--ccHHHHHHHHHH
Q 033815 6 LIPSGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPI--YDVAAILTSIQS 70 (111)
Q Consensus 6 ~y~gg~f~~~i~~p~~YP~~pP~i~f~-t~i~HpnV~~~G~icl~~l~~~W~p~--~~i~~il~~i~~ 70 (111)
||.|-..+-+|.|...+|..||.+.|. ..-|+|... .+ +.+ .+|.+. ..+..++..|..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~l--~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---KL--PSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---hc--chh-hcCCCCCchHHHHHHHHHHH
Confidence 688888888999999999999999996 334788422 21 222 578875 345566655543
No 38
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=76.00 E-value=1.6 Score=32.54 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=30.6
Q ss_pred EEEEEEEeCCCCCCCCCcceeecccccceeeCCCcEeecCccccCCC-cccHHHHHHHHHHhh
Q 033815 11 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLL 72 (111)
Q Consensus 11 ~f~~~i~~p~~YP~~pP~i~f~t~i~HpnV~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll 72 (111)
.-.++|.++.+||.++|.+...-++ .+...|.+ ..++.+++...+..+
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHHHHHHH
Confidence 4468899999999999976443332 12245777 567777776665544
No 39
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.76 E-value=4.8 Score=28.76 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=18.2
Q ss_pred EEEEEEEeCCCCCCCCCcce
Q 033815 11 TFKLTLQFTEDYPNKPPTVR 30 (111)
Q Consensus 11 ~f~~~i~~p~~YP~~pP~i~ 30 (111)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 40
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.65 E-value=2.1 Score=30.10 Aligned_cols=62 Identities=15% Similarity=0.338 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCCCCCCcceeecccc----ccee--eCCCcEeecCccccCCCcccHHHHHHHHHHhhc
Q 033815 12 FKLTLQFTEDYPNKPPTVRFVSRMF----HPNI--YADGSICLDILQNQWSPIYDVAAILTSIQSLLC 73 (111)
Q Consensus 12 f~~~i~~p~~YP~~pP~i~f~t~i~----HpnV--~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 73 (111)
|++.+.+.--=|.+=|...++.-.- -|.- --.+..|++++...|+|.+|+++.+.-++.++.
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 4556665433355667777664211 1111 124679999999999999999988777766554
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=62.18 E-value=11 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.684 Sum_probs=22.3
Q ss_pred CCCEEEEEEEeCCCCC-CCCCcceee
Q 033815 8 PSGTFKLTLQFTEDYP-NKPPTVRFV 32 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP-~~pP~i~f~ 32 (111)
+.|.|.|.-..|-.|| ..||-|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4599999999999999 999998776
No 42
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=61.85 E-value=12 Score=30.17 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=24.7
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 033815 82 NSEAARMFSENKREYNRRVREIVEQSWTAD 111 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (111)
-+|+.++.++|++.|.+.|++...++.+.|
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv~Am 300 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHVEAM 300 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 456777778899999999999998877654
No 43
>PRK05414 urocanate hydratase; Provisional
Probab=59.21 E-value=15 Score=29.79 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.2
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 033815 82 NSEAARMFSENKREYNRRVREIVEQSWTAD 111 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (111)
-+|+..+.++|++.|.++|++...++.+.|
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 310 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHVEAM 310 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 467777888899999999999998887654
No 44
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=59.17 E-value=15 Score=29.67 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=24.9
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 033815 82 NSEAARMFSENKREYNRRVREIVEQSWTAD 111 (111)
Q Consensus 82 n~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (111)
-+++..+..+|++.|.+.|++...++...|
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 301 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHVRAM 301 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 467777778899999999999998877654
No 45
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=58.97 E-value=30 Score=27.84 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Q 033815 83 SEAARMFSENKREYNRRVREIVEQSWTAD 111 (111)
Q Consensus 83 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (111)
.++.++-.+|+++|.+.|++..+++.+.|
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~Am 310 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVEAM 310 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 56777778899999999999999887765
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=57.92 E-value=14 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCCEEEEEEEeCCCCCCCCCcceee
Q 033815 8 PSGTFKLTLQFTEDYPNKPPTVRFV 32 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP~~pP~i~f~ 32 (111)
+.|.|.|+-.+|--||.++|-|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4689999999999999999999886
No 47
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=56.99 E-value=29 Score=21.00 Aligned_cols=26 Identities=12% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 84 EAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 84 ~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
+...++++|+++|.+..++.+++.++
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988887654
No 48
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=52.09 E-value=15 Score=30.08 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=25.6
Q ss_pred cCCCCCCEEEEEEEeCCCCCC---CCCcceeecc
Q 033815 4 ILLIPSGTFKLTLQFTEDYPN---KPPTVRFVSR 34 (111)
Q Consensus 4 ~t~y~gg~f~~~i~~p~~YP~---~pP~i~f~t~ 34 (111)
.|||.=|.|-+ +.+|++||+ +-|-++|+|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 47899999987 557999999 5799999998
No 49
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=50.29 E-value=30 Score=25.54 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 81 ANSEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 81 ~n~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.+.+++..|.++++.|.+.+.+.++++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 78999999999999999999999988654
No 50
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=49.61 E-value=23 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCC-----CCCCcceee
Q 033815 8 PSGTFKLTLQFTEDYP-----NKPPTVRFV 32 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP-----~~pP~i~f~ 32 (111)
+.|.|.|+-.+|--|| ..||-|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4689999999999999 899988776
No 51
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=49.22 E-value=21 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEEEeCCCCCCCCCcceeecc
Q 033815 11 TFKLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 11 ~f~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
.|-+.|.+|..||...|.++|++-
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEee
Confidence 455677789999999999999864
No 52
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.90 E-value=20 Score=30.61 Aligned_cols=26 Identities=27% Similarity=0.715 Sum_probs=20.5
Q ss_pred CCEE-EEEEEeCCCCCCC-CCcceeecc
Q 033815 9 SGTF-KLTLQFTEDYPNK-PPTVRFVSR 34 (111)
Q Consensus 9 gg~f-~~~i~~p~~YP~~-pP~i~f~t~ 34 (111)
|-+| ++.|.||.+||.+ +|+++|..+
T Consensus 464 ~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 464 DYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cceeEEEEEeccccCCCCCCCceEEecC
Confidence 3344 7889999999995 789998854
No 53
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=44.59 E-value=40 Score=19.81 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=23.0
Q ss_pred eeeCCCcEeecCccccCCCcccHHHHHHHHHHhhcC
Q 033815 39 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 74 (111)
Q Consensus 39 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 74 (111)
-|+++|.|-++.++.---...|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 367899999999865455567888777777766654
No 54
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=43.88 E-value=62 Score=18.47 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.3
Q ss_pred CcCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 033815 80 PANSEAARMFSENKREYNRRVREIVEQSWTA 110 (111)
Q Consensus 80 p~n~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (111)
.++.+++....++-+.+.+.+-+.+.+++++
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~h 49 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMRH 49 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999888888888877777654
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.72 E-value=56 Score=20.08 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=21.3
Q ss_pred CCCCEEEEEEEeCCCCCCCCCcceeecc
Q 033815 7 IPSGTFKLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 7 y~gg~f~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
-||..+.|.-.-|..|| .|.|.+.++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46888888888899999 599988865
No 56
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=40.06 E-value=75 Score=18.36 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHhc
Q 033815 68 IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 110 (111)
Q Consensus 68 i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (111)
|+.++..-++..-+.+++...+.+--+.|...+-+.+.+.+++
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkH 49 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKH 49 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554455667899999999888888888887777666653
No 57
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=36.49 E-value=31 Score=24.71 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=40.3
Q ss_pred CCCCcceeecccccceee--CCCcEeecCccccC--CCcccHHHHHHHHHHhhcCCCC
Q 033815 24 NKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNP 77 (111)
Q Consensus 24 ~~pP~i~f~t~i~HpnV~--~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~ 77 (111)
..||.|-|-.+.|.-.|| +-|-|--.+....| -|+..+.+-|..|..++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 378999999999999988 34655445544454 5678888888888888877654
No 58
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=35.33 E-value=38 Score=27.23 Aligned_cols=26 Identities=35% Similarity=0.781 Sum_probs=19.4
Q ss_pred CCCCEEEEEEEeC-----CCCCCCCCcceeecccccceee
Q 033815 7 IPSGTFKLTLQFT-----EDYPNKPPTVRFVSRMFHPNIY 41 (111)
Q Consensus 7 y~gg~f~~~i~~p-----~~YP~~pP~i~f~t~i~HpnV~ 41 (111)
-.||.|.+++.+- ++||.. ||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~G---------IFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPDG---------IFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCCc---------cccCcHh
Confidence 3589999999985 445654 8999754
No 59
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.54 E-value=58 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=20.1
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCcceee
Q 033815 8 PSGTFKLTLQFTEDYPN-----KPPTVRFV 32 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP~-----~pP~i~f~ 32 (111)
+.|.|.|+-..|-.||. .||-|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 46889999999999997 66666554
No 60
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=32.13 E-value=1.2e+02 Score=18.16 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 033815 78 NSPANSEAARMFSENKREYNRRVREIVEQS 107 (111)
Q Consensus 78 ~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~ 107 (111)
.+|.|.+|-..|.+-.++..+..+++.+++
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~y 53 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRY 53 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999888876666666666666654
No 61
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.68 E-value=1.1e+02 Score=20.98 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 033815 55 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107 (111)
Q Consensus 55 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~ 107 (111)
|..-..+..+...|..-|.+-++ +-+..|++|-+.|.++.++.-++.
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666777777888877765443 235677888888888776654443
No 62
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.63 E-value=67 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=19.1
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCcceee
Q 033815 8 PSGTFKLTLQFTEDYPN-----KPPTVRFV 32 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP~-----~pP~i~f~ 32 (111)
+.|.|.|+-..|--||. .||-|.|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35889999999999995 66655443
No 63
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=30.29 E-value=29 Score=23.65 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=10.6
Q ss_pred cccccceeeCCCcEee
Q 033815 33 SRMFHPNIYADGSICL 48 (111)
Q Consensus 33 t~i~HpnV~~~G~icl 48 (111)
.++|||+.| +|.+|.
T Consensus 49 KPiYhP~~D-cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD-CGDHVV 63 (165)
T ss_pred CCccCCccC-CCCEEE
Confidence 369999988 455554
No 64
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=29.45 E-value=56 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=19.6
Q ss_pred CCCCEEEEEEEeCCC-----CCCCCCcceeecccccceee
Q 033815 7 IPSGTFKLTLQFTED-----YPNKPPTVRFVSRMFHPNIY 41 (111)
Q Consensus 7 y~gg~f~~~i~~p~~-----YP~~pP~i~f~t~i~HpnV~ 41 (111)
..||.|.+++.+-++ ||.. ||||+-+
T Consensus 359 ~~~~~yElDLVLRnN~Tsee~P~G---------IFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSEEHPDG---------IFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCccccCCc---------cccCchh
Confidence 469999999998644 5544 8999754
No 65
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=28.89 E-value=63 Score=18.19 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=11.5
Q ss_pred cCCCcccHHHHHHHHHHh
Q 033815 54 QWSPIYDVAAILTSIQSL 71 (111)
Q Consensus 54 ~W~p~~~i~~il~~i~~l 71 (111)
.|.|.++|.++|.....-
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 599999999999876653
No 66
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=28.84 E-value=1.1e+02 Score=17.22 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.1
Q ss_pred CcCHHHHHHHHHCHHHHHHHHH
Q 033815 80 PANSEAARMFSENKREYNRRVR 101 (111)
Q Consensus 80 p~n~~~~~~~~~~~~~f~~~~~ 101 (111)
..|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3799999999999999988754
No 67
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=28.38 E-value=57 Score=25.86 Aligned_cols=23 Identities=35% Similarity=0.910 Sum_probs=17.9
Q ss_pred CCEEEEEEEeCC-----CCCCCCCcceeeccccccee
Q 033815 9 SGTFKLTLQFTE-----DYPNKPPTVRFVSRMFHPNI 40 (111)
Q Consensus 9 gg~f~~~i~~p~-----~YP~~pP~i~f~t~i~HpnV 40 (111)
||.|.+++.+-+ .||.. ||||+=
T Consensus 363 ~~~yELDlVLRnNrT~e~yPdG---------IFHPH~ 390 (503)
T COG4468 363 GGLYELDLVLRNNRTSEEYPDG---------IFHPHQ 390 (503)
T ss_pred CCeeEEEEEEecCCccccCCCc---------ccCCcH
Confidence 999999999864 45544 899863
No 68
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=26.75 E-value=70 Score=21.92 Aligned_cols=21 Identities=33% Similarity=0.789 Sum_probs=16.3
Q ss_pred EEEEEeCCCCCCCCCcceeecc
Q 033815 13 KLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 13 ~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
.++|.| .+|-..||+|.|+.+
T Consensus 56 ~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 56 RLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred EEEEec-cccCcCCCceEEecc
Confidence 345555 689999999999876
No 69
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=26.32 E-value=85 Score=23.95 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.0
Q ss_pred EEEEEEEeCCCCCCCCCcceeecc
Q 033815 11 TFKLTLQFTEDYPNKPPTVRFVSR 34 (111)
Q Consensus 11 ~f~~~i~~p~~YP~~pP~i~f~t~ 34 (111)
.+.+.+..+..||...|+|+...+
T Consensus 46 cvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 46 CVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEecCCCCCCcCCceEecCC
Confidence 466888899999999999998876
No 70
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=1e+02 Score=20.94 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=23.8
Q ss_pred ceeeCCCcEeecCccccCCCcccHHHHHHHHHHh
Q 033815 38 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 71 (111)
Q Consensus 38 pnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~l 71 (111)
--|+++|+|..-. ..+++.-+..+++..|..+
T Consensus 124 fvId~dG~I~~~~--~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 124 FVIDPDGKIRYVW--RKVKVKGHADEVLAALKKL 155 (157)
T ss_pred EEECCCCeEEEEe--cCCCCcccHHHHHHHHHHh
Confidence 3467889987644 5677788888888888765
No 71
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=26.01 E-value=50 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=19.8
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCCcc
Q 033815 3 SILLIPSGTFKLTLQFTEDYPNKPPTV 29 (111)
Q Consensus 3 ~~t~y~gg~f~~~i~~p~~YP~~pP~i 29 (111)
-+|||..|+|++.=.+.+.-=-+.|.|
T Consensus 181 DITPygNgvyHiNSIlQP~~aT~aPVV 207 (276)
T PF06675_consen 181 DITPYGNGVYHINSILQPAVATDAPVV 207 (276)
T ss_pred ccccCCCCceeeeccccchhhcCCCee
Confidence 479999999999877755444455555
No 72
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=26.00 E-value=26 Score=17.30 Aligned_cols=16 Identities=25% Similarity=0.804 Sum_probs=9.1
Q ss_pred cccceeeCCCc-EeecC
Q 033815 35 MFHPNIYADGS-ICLDI 50 (111)
Q Consensus 35 i~HpnV~~~G~-icl~~ 50 (111)
.|||.+..+|+ .|...
T Consensus 2 ~yHPg~~~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-EETTCESSSS-
T ss_pred CcCCCcccCCcCcCCCC
Confidence 48999988776 55543
No 73
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=25.90 E-value=1e+02 Score=15.66 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 033815 62 AAILTSIQSLLCDPNPNS 79 (111)
Q Consensus 62 ~~il~~i~~ll~~p~~~~ 79 (111)
..|+.++.+-|.+|+..+
T Consensus 4 ~~V~~G~KAal~NPnvSe 21 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSE 21 (36)
T ss_pred HHHHHHHHHHhcCCCcCH
Confidence 457788899999988754
No 74
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=25.82 E-value=1.4e+02 Score=17.19 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 67 SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 67 ~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
.|+.++..-++...+++++..+..+=-+.|...+-..+-+-++
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666667777789999888888788888888776665554
No 75
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=25.69 E-value=73 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 033815 81 ANSEAARMFSENKREYNRRVREIVEQSWT 109 (111)
Q Consensus 81 ~n~~~~~~~~~~~~~f~~~~~~~~~~~~~ 109 (111)
+.++.. +..+.|.+.+++.+.++.+
T Consensus 40 lspemk----ehyekfe~miqehtdkfnk 64 (90)
T PF03037_consen 40 LSPEMK----EHYEKFERMIQEHTDKFNK 64 (90)
T ss_pred cCHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 555543 4444555555555555443
No 76
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=25.32 E-value=90 Score=23.35 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=14.3
Q ss_pred CCCEEEEEEEeCCCCC
Q 033815 8 PSGTFKLTLQFTEDYP 23 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP 23 (111)
+.|.|.|+-..|.-||
T Consensus 179 ~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 179 AEGRYRARSIVPSGYG 194 (285)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4789999999999997
No 77
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.66 E-value=1.8e+02 Score=21.24 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 033815 55 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 108 (111)
Q Consensus 55 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~~ 108 (111)
|..-..+..+...|..-|.+-+ ++-+..|++|-++|.++.++.-++..
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~d------P~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSALD------PDNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666677777888887776433 34466889999999988877655544
No 78
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=23.19 E-value=44 Score=28.51 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCCCEEEEEEEeCCCC-CCCCCcceeecc---cccceeeCCCcEee
Q 033815 7 IPSGTFKLTLQFTEDY-PNKPPTVRFVSR---MFHPNIYADGSICL 48 (111)
Q Consensus 7 y~gg~f~~~i~~p~~Y-P~~pP~i~f~t~---i~HpnV~~~G~icl 48 (111)
|||.+|+.+|.-..+= -+.--..+|.|- +.|-.+-.+|-||+
T Consensus 194 yeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLitt 239 (1157)
T KOG4278|consen 194 YEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITT 239 (1157)
T ss_pred ecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEe
Confidence 8999999999975542 112234455542 34444557899996
No 79
>PRK14052 effector protein; Provisional
Probab=22.91 E-value=18 Score=27.67 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=19.0
Q ss_pred ccceeeCCCcEee------cCccccCCC-cccHHHHHHH
Q 033815 36 FHPNIYADGSICL------DILQNQWSP-IYDVAAILTS 67 (111)
Q Consensus 36 ~HpnV~~~G~icl------~~l~~~W~p-~~~i~~il~~ 67 (111)
.||.+|.|||+-- ++-...|+| +.+-+..|.+
T Consensus 347 IHPFlDGNGRtGRLLInLi~lrn~~~~pl~~~~e~~l~g 385 (387)
T PRK14052 347 YHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENSLHG 385 (387)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcCCcCccccchhhhhcc
Confidence 7999999988631 111345777 3444444433
No 80
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=22.63 E-value=1.1e+02 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=14.4
Q ss_pred CCCEEEEEEEeCCCCC
Q 033815 8 PSGTFKLTLQFTEDYP 23 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP 23 (111)
+.|.|.|+-..|.-||
T Consensus 171 ~~G~y~F~Ti~Pg~Yp 186 (277)
T cd03461 171 EDGRYAFRTLRPTPYP 186 (277)
T ss_pred CCCCEEEEEECCCCcC
Confidence 4689999999999998
No 81
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=46 Score=25.35 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=17.5
Q ss_pred CCCCCcceeecccccceeeCC
Q 033815 23 PNKPPTVRFVSRMFHPNIYAD 43 (111)
Q Consensus 23 P~~pP~i~f~t~i~HpnV~~~ 43 (111)
+..-|.|.|.-.+|||||-+-
T Consensus 306 ~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 306 SEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred cccCceEEEEEeccCcccccc
Confidence 456799999999999998753
No 82
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.45 E-value=2.1e+02 Score=20.59 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHH
Q 033815 55 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106 (111)
Q Consensus 55 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~ 106 (111)
|..-..+..+...|..-|..-+++ -+..|++|-+.|.++.++.-++
T Consensus 115 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~ 160 (266)
T cd01018 115 WLSPANAKIMAENIYEALAELDPQ------NATYYQANLDALLAELDALDSE 160 (266)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 776667778888888888754433 3567777878887776655444
No 83
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.75 E-value=2.2e+02 Score=20.41 Aligned_cols=47 Identities=9% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 033815 55 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107 (111)
Q Consensus 55 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~ 107 (111)
|..-.....+...|...|..-++. -+..|.+|-++|.++.++..++.
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPD------NKKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666777778888877644432 24577888888887776654443
No 84
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.64 E-value=2.1e+02 Score=20.80 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHH
Q 033815 55 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 106 (111)
Q Consensus 55 W~p~~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~ 106 (111)
|..-..+..+...|...|..-++. -+..|++|-+.|.++.++.-++
T Consensus 104 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~ 149 (276)
T cd01016 104 WFDVKLWKYAVKAVAEVLSEKLPE------HKDEFQANSEAYVEELDSLDAY 149 (276)
T ss_pred ccCHHHHHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 766666777777788777654433 2556788888888776655443
No 85
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.31 E-value=2.6e+02 Score=19.23 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=20.5
Q ss_pred CEEEEEEEeCCCCCC-----------CCCcceeecccccceee
Q 033815 10 GTFKLTLQFTEDYPN-----------KPPTVRFVSRMFHPNIY 41 (111)
Q Consensus 10 g~f~~~i~~p~~YP~-----------~pP~i~f~t~i~HpnV~ 41 (111)
|-+-+.|.+..+||. +|=+..-+.+-||||-+
T Consensus 107 ~~~DlvlfvG~~~~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~ 149 (171)
T PRK00945 107 GNYDLVIFIGVTYYYASQGLSALKHFSPLKTITIDRYYHPNAD 149 (171)
T ss_pred CCcCEEEEecCCchhHHHHHHHHhhcCCceEEEecCCcCCCCc
Confidence 577888888999985 23112223567888844
No 86
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=21.17 E-value=1.2e+02 Score=22.66 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.8
Q ss_pred CCCEEEEEEEeCCCCC
Q 033815 8 PSGTFKLTLQFTEDYP 23 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP 23 (111)
+.|.|.|+-..|..||
T Consensus 183 adG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQ 198 (281)
T ss_pred CCCCEEEEEECCCCcC
Confidence 4689999999998887
No 87
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.97 E-value=1.4e+02 Score=22.16 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEEEeCCCCCCCC--Ccceeecc
Q 033815 5 LLIPSGTFKLTLQFTEDYPNKP--PTVRFVSR 34 (111)
Q Consensus 5 t~y~gg~f~~~i~~p~~YP~~p--P~i~f~t~ 34 (111)
+.+.|..|++.|..|.+||-.- |.|.|+..
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 5688999999999999998876 88888753
No 88
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=20.95 E-value=47 Score=21.17 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=14.3
Q ss_pred CCcEeecCccccCCCcccHH
Q 033815 43 DGSICLDILQNQWSPIYDVA 62 (111)
Q Consensus 43 ~G~icl~~l~~~W~p~~~i~ 62 (111)
.|.+|.-.+...|+|.+++.
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CceEEEEEcCCCCCCCCEEE
Confidence 35567777778899987643
No 89
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.94 E-value=1.2e+02 Score=22.60 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=14.2
Q ss_pred CCCEEEEEEEeCCCCC
Q 033815 8 PSGTFKLTLQFTEDYP 23 (111)
Q Consensus 8 ~gg~f~~~i~~p~~YP 23 (111)
+.|.|.|+-..|.-||
T Consensus 175 ~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 175 ADGRYRFRSIMPSGYG 190 (282)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4799999999999996
No 90
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=20.73 E-value=2.3e+02 Score=19.51 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=31.8
Q ss_pred CCCc-ccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 033815 55 WSPI-YDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 107 (111)
Q Consensus 55 W~p~-~~i~~il~~i~~ll~~p~~~~p~n~~~~~~~~~~~~~f~~~~~~~~~~~ 107 (111)
..|. .++.+++..|..+|.....+--.-...-..|+.|+.++.+.|+--.-++
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 3443 4688888888888865433211111223457788888888877544333
No 91
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.60 E-value=2.9e+02 Score=20.51 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=18.4
Q ss_pred cccCCCcccHHHHHHHHHHhhc
Q 033815 52 QNQWSPIYDVAAILTSIQSLLC 73 (111)
Q Consensus 52 ~~~W~p~~~i~~il~~i~~ll~ 73 (111)
+..|.+...+.++...|..+|.
T Consensus 139 k~~l~~k~~lqd~~dal~elfe 160 (293)
T COG4079 139 KDNLTKKSKLQDAVDALMELFE 160 (293)
T ss_pred HhhccCCCCHHHHHHHHHHHHH
Confidence 3579999999998888888776
Done!