BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033818
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
Query: 1 MFRSTGQELQNTAKEALEMLQNVEEHGLG--EKKFFNGDNIGLVDLAFGSIVYWLQVIED 58
+FR+ G+EL+ K LE+L+ +EEH +G + K+F GD IG+VD+AF I +WL VIE+
Sbjct: 111 IFRTKGEELEKAVKNCLEVLKTIEEHAMGVSDDKYFGGDKIGIVDIAFCGIAHWLGVIEE 170
Query: 59 VVGVKIFVSHKFPRLHAWLETFKQVPIIEENLPNQDEMLVVFKRRREQLVASA 111
V GVK+ S KFPRLHAW E FK+ PII+ENLP++D+M FKRRRE ++ASA
Sbjct: 171 VAGVKVLESQKFPRLHAWTENFKEAPIIKENLPDRDQMTAFFKRRREMILASA 223
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
Length = 219
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MFRSTGQELQNTAKEALEMLQNVEEHGLGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDVV 60
++ S G+E + KE +E L+ +EE LG+K +F GDN+G VD+A W + E
Sbjct: 113 IWTSKGEEKEAAKKEFIEALKLLEEQ-LGDKTYFGGDNLGFVDIALVPFYTWFKAYETFG 171
Query: 61 GVKIFVSHKFPRLHAWLETFKQVPIIEENLPNQDEMLVVFKRRREQL 107
+ I + P+ AW + Q + ++LP+Q ++ R++L
Sbjct: 172 TLNI--ESECPKFIAWAKRCLQKESVAKSLPDQQKVYEFIMDLRKKL 216
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 39 IGLVDLAFGSIVYWLQVIEDVVGVKIFVSHKFPRLHAWLETFKQVPIIEENLPNQDEML 97
+GLVD+A G ++ W++V E + G KIF + K P L AW+E F ++ + LP+ +L
Sbjct: 158 VGLVDVALGGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAALPDVGRLL 216
>pdb|2IL3|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IL3|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMI|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMI|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMK|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMK|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
Length = 221
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 33 FFNGDNIGLVDLAFGSIVYWLQVIEDVVGVKIFVSHKFPRLHAWLETFKQVPIIEE 88
F G + + D + + I ++GV K PR++AW++ KQ+P EE
Sbjct: 149 FVAGPTMTIADFS------CISTISSIMGVVPLEQSKHPRIYAWIDRLKQLPYYEE 198
>pdb|3VWX|A Chain A, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|B Chain B, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|C Chain C, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|D Chain D, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
Length = 222
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 23 VEEHG-----LGEKKFFNGDNIGLVDLAFGSIVYWLQVIEDVVGVKIFVSHKFPRLHAWL 77
VE +G L K+ GD++ + D + + V L ++ KFP+L AWL
Sbjct: 136 VESYGFLESFLKNNKYMAGDHLTIADFSIVTSVTSLVAFAEID------QSKFPKLSAWL 189
Query: 78 ETFKQVPIIEE 88
++ + +P EE
Sbjct: 190 KSLQSLPFYEE 200
>pdb|4HI7|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
pdb|4HI7|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
Length = 228
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 67 SHKFPRLHAWLETFKQVPIIEENLPNQDEMLVVFKRRREQLVAS 110
+ K+P+L AW++ +Q+P EN + + K + +V +
Sbjct: 179 AAKYPKLSAWIKRLEQLPYYAENSTGAQQFVAAVKSKPFTVVGA 222
>pdb|1OYJ|A Chain A, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|B Chain B, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|C Chain C, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|D Chain D, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione
Length = 231
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 1 MFRSTGQELQNTAKEALEMLQNVEEHGLGEKKFFNGDNIGL---VDLAFGSIVYWLQVIE 57
++R G+ +E E+L+ +E LG+++FF G G VD+A W E
Sbjct: 122 LWRLKGEPQAAAGREMAEILRTLEAE-LGDREFFGGGGGGRLGFVDVALVPFTAWFYSYE 180
Query: 58 DVVGVKIFVSHKFPRLHAWLETFKQVPIIEENLPNQDEM 96
G V PRL AW ++ + ++LP+ +++
Sbjct: 181 RCGGFS--VEEVAPRLAAWARRCGRIDSVVKHLPSPEKV 217
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 7 QELQNTAKEALEMLQNVEEHGLGEK-KFFNGDNIGLVDL 44
Q L N+A+E E++ N +G GEK KF +G + L+ L
Sbjct: 725 QLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKL 763
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 7 QELQNTAKEALEMLQNVEEHGLGEK-KFFNGDNIGLVDL 44
Q L N+A+E E++ N +G GEK KF +G + L+ L
Sbjct: 702 QLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKL 740
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,201,827
Number of Sequences: 62578
Number of extensions: 120010
Number of successful extensions: 255
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 10
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)