BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033819
MASIKLCNFVLLLLLVQLLAPAYVVVQGSRTQVGIPHHQSFSPSSPVHFKESSKAKVMNR
NSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR

High Scoring Gene Products

Symbol, full name Information P value
STOMAGEN
AT4G12970 		protein from Arabidopsis thaliana 6.8e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033819
        (111 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2123261 - symbol:STOMAGEN "AT4G12970" species:...   274  6.8e-24   1


>TAIR|locus:2123261 [details] [associations]
            symbol:STOMAGEN "AT4G12970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0010375 "stomatal complex
            patterning" evidence=IMP;IDA] [GO:0007267 "cell-cell signaling"
            evidence=NAS] [GO:2000123 "positive regulation of stomatal complex
            development" evidence=IDA] [GO:2000038 "regulation of stomatal
            complex development" evidence=IMP] [GO:0016556 "mRNA modification"
            evidence=RCA] GO:GO:0005576 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0007267 GO:GO:2000123 EMBL:AL161535 EMBL:AL079349
            GO:GO:0010375 GO:GO:0010052 EMBL:AK175876 IPI:IPI00530072
            PIR:T10199 RefSeq:NP_193033.1 UniGene:At.43880 PDB:2LIY PDBsum:2LIY
            ProteinModelPortal:Q9SV72 STRING:Q9SV72 PRIDE:Q9SV72 DNASU:826909
            EnsemblPlants:AT4G12970.1 GeneID:826909 KEGG:ath:AT4G12970
            KEGG:dosa:Os01t0914400-01 TAIR:At4g12970 eggNOG:NOG327577
            HOGENOM:HOG000077498 InParanoid:Q9SV72 OMA:NDPINSA PhylomeDB:Q9SV72
            ProtClustDB:PLN03207 Genevestigator:Q9SV72 Uniprot:Q9SV72
        Length = 102

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 48/52 (92%), Positives = 50/52 (96%)

Query:    61 NSRRL-MIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
             NSRR  MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct:    51 NSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111        93   0.00091  102 3  11 22  0.47    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.05u 0.18s 11.23t   Elapsed:  00:00:01
  Total cpu time:  11.05u 0.18s 11.23t   Elapsed:  00:00:01
  Start:  Fri May 10 04:58:32 2013   End:  Fri May 10 04:58:33 2013

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