BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033819
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SV72|EPFL9_ARATH EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana
           GN=EPFL9 PE=1 SV=1
          Length = 102

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 48/49 (97%)

Query: 63  RRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111
           RR MIGSTAPTCTYNECRGC+YKCRAEQVPVEGNDPINSAYHY+CVCHR
Sbjct: 54  RRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 102


>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
          Length = 514

 Score = 32.7 bits (73), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 35  IPHHQSFSPSSPVHFKESSK--AKVMNRN--------SRRLMIGSTAPTCTYNECRGCKY 84
           IP  ++ SPS+     +S K    VM +N          R+++GS  P CT N+C GC  
Sbjct: 424 IPACKNLSPSAKRKESKSHKHPKTVMVKNMGAYDKGNRTRILLGSRPPNCT-NKCHGCS- 481

Query: 85  KCRAEQVPVEGNDPINSAYHYKCVCHR 111
            C+A+ V V    P    Y  + +C R
Sbjct: 482 PCKAKLVIVHRIMP-QEYYPQRWMCSR 507


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.133    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,179,227
Number of Sequences: 539616
Number of extensions: 1295334
Number of successful extensions: 3499
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3498
Number of HSP's gapped (non-prelim): 4
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)