Query 033819
Match_columns 111
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 10:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2liy_A Epidermal patterning fa 100.0 9.5E-41 3.2E-45 211.5 3.5 45 67-111 1-45 (45)
2 3cbc_A Neutrophil gelatinase-a 54.0 9.8 0.00033 25.6 2.8 35 59-93 45-79 (198)
3 1kbe_A Kinase suppressor of RA 20.9 24 0.0008 21.0 0.3 12 77-88 28-39 (49)
4 2w2n_E LDL receptor, low-densi 19.8 54 0.0018 21.0 1.8 19 68-86 21-43 (107)
5 2fyg_A Replicase polyprotein 1 19.2 27 0.00093 25.6 0.3 20 81-100 85-105 (128)
6 3vgi_A Endoglucanase A; beta-j 18.5 29 0.00098 27.5 0.3 35 14-49 11-46 (319)
7 3g20_A Type II secretion prote 16.2 52 0.0018 22.3 1.2 16 90-108 75-90 (123)
8 3sov_A LRP-6, low-density lipo 15.9 65 0.0022 23.4 1.7 25 76-110 267-295 (318)
9 1ijq_A LDL receptor, low-densi 14.5 90 0.0031 22.0 2.1 29 76-110 267-302 (316)
10 3r24_B Non-structural protein 13.1 48 0.0016 24.9 0.3 30 71-100 74-112 (155)
No 1
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=100.00 E-value=9.5e-41 Score=211.52 Aligned_cols=45 Identities=96% Similarity=1.807 Sum_probs=44.5
Q ss_pred cccCCCccccccccCccccccceeecccCCCCCCCcceeeeccCC
Q 033819 67 IGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYKCVCHR 111 (111)
Q Consensus 67 iGStAPtCTYNECRgCk~kC~aeqVPv~~ndP~nSayhy~cvchr 111 (111)
|||+|||||||||||||++|+||||||||||||||||||+|||||
T Consensus 1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAYhY~CvChr 45 (45)
T 2liy_A 1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVCHR 45 (45)
T ss_dssp CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCEEEEEEEEC
T ss_pred CCccCCceeehhhcCcccccceeeccccCCCcccchheeEeEecC
Confidence 899999999999999999999999999999999999999999997
No 2
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=53.99 E-value=9.8 Score=25.60 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=19.6
Q ss_pred cccccceecccCCCccccccccCccccccceeecc
Q 033819 59 NRNSRRLMIGSTAPTCTYNECRGCKYKCRAEQVPV 93 (111)
Q Consensus 59 ~~~~rr~miGStAPtCTYNECRgCk~kC~aeqVPv 93 (111)
.|...+...=..||.|.+.+-+||...+.++--+.
T Consensus 45 ~r~~G~WY~ia~~~~~~~~~e~~~~~~~~a~~~~~ 79 (198)
T 3cbc_A 45 NQFQGKWYVVGLAGNAILREDKDPQKMYATIYELK 79 (198)
T ss_dssp TTTCEEEEEEEEEESSCCCCSSSCCBCCEEEEEEC
T ss_pred HHhCeEeEEEEEEeccccccccCCceeEeEEEEEC
Confidence 34555555445567666666677655555554443
No 3
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=20.89 E-value=24 Score=21.01 Aligned_cols=12 Identities=33% Similarity=1.137 Sum_probs=9.1
Q ss_pred ccccCccccccc
Q 033819 77 NECRGCKYKCRA 88 (111)
Q Consensus 77 NECRgCk~kC~a 88 (111)
-.|++|+++|-.
T Consensus 28 ~kC~~Ck~~cH~ 39 (49)
T 1kbe_A 28 VKCKHCRLKCHN 39 (49)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCccch
Confidence 369999988753
No 4
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=19.81 E-value=54 Score=20.96 Aligned_cols=19 Identities=37% Similarity=0.682 Sum_probs=11.5
Q ss_pred ccCCCcccccccc----Cccccc
Q 033819 68 GSTAPTCTYNECR----GCKYKC 86 (111)
Q Consensus 68 GStAPtCTYNECR----gCk~kC 86 (111)
|-+.-.|..|||. +|...|
T Consensus 21 ~~~~~~Cd~neC~~~~~~C~~~C 43 (107)
T 2w2n_E 21 LYFQGAMGTNECLDNNGGCSYVC 43 (107)
T ss_dssp CCCSCCBSCCGGGTGGGGCSSEE
T ss_pred CcCCCCCcCccCcCCCCCCCCEe
Confidence 3344568888886 455444
No 5
>2fyg_A Replicase polyprotein 1AB; SARS virus polyprotein non-structural protein NSP10, zinc FI viral protein; 1.80A {Sars coronavirus} SCOP: g.86.1.1 PDB: 2xyq_B* 2xyr_B* 2xyv_B*
Probab=19.21 E-value=27 Score=25.59 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.1
Q ss_pred Cccccccceeecc-cCCCCCC
Q 033819 81 GCKYKCRAEQVPV-EGNDPIN 100 (111)
Q Consensus 81 gCk~kC~aeqVPv-~~ndP~n 100 (111)
-|++|=+.-|||+ .-+|||.
T Consensus 85 ~C~~KGkfVQiP~~g~~DPi~ 105 (128)
T 2fyg_A 85 FCDLKGKYVQIPTTCANDPVG 105 (128)
T ss_dssp CCSSTTSEEEEEGGGTTCHHH
T ss_pred eeecCceEEEcccCCccCCee
Confidence 5999999999999 8899984
No 6
>3vgi_A Endoglucanase A; beta-jelly roll fold, hydrolase, carbohydrate/sugar binding; HET: NHE GOL; 1.07A {Pyrococcus furiosus}
Probab=18.51 E-value=29 Score=27.54 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHhhcccceeeecCcccc-ccccccccCCCCCccc
Q 033819 14 LLVQLLAPAYVVVQGSRTQV-GIPHHQSFSPSSPVHF 49 (111)
Q Consensus 14 ~~~il~~~Aa~viqgs~t~e-~~p~~~s~s~~~q~~~ 49 (111)
+++|||.-|.+.+.-+.+.+ ++-.+. .+.+||..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 46 (319)
T 3vgi_A 11 ILTILLVQAIYFVEKYHTSEDKSTSNT-SSTPPQTTL 46 (319)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHhhhhhhHhhcCCCcccccee-ccCCCcccc
Confidence 44555555555554443332 222222 344555544
No 7
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=16.25 E-value=52 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.5
Q ss_pred eecccCCCCCCCcceeeec
Q 033819 90 QVPVEGNDPINSAYHYKCV 108 (111)
Q Consensus 90 qVPv~~ndP~nSayhy~cv 108 (111)
.|| .||...+|+|++.
T Consensus 75 ~~P---~DPwg~~y~Y~~p 90 (123)
T 3g20_A 75 RLP---QDPWGGDYQLLNP 90 (123)
T ss_dssp CCC---BCTTSCBCEEESS
T ss_pred CCC---CCCCCCCeEEecC
Confidence 477 6999999999874
No 8
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=15.95 E-value=65 Score=23.38 Aligned_cols=25 Identities=36% Similarity=1.035 Sum_probs=16.9
Q ss_pred ccccc----CccccccceeecccCCCCCCCcceeeeccC
Q 033819 76 YNECR----GCKYKCRAEQVPVEGNDPINSAYHYKCVCH 110 (111)
Q Consensus 76 YNECR----gCk~kC~aeqVPv~~ndP~nSayhy~cvch 110 (111)
.|+|. ||.+-|-.. |-.. .|.|.|+
T Consensus 267 ~n~C~~~ng~Cs~~C~~~--------~~~~--~~~C~C~ 295 (318)
T 3sov_A 267 TNPCGIDNGGCSHLCLMS--------PVKP--FYQCACP 295 (318)
T ss_dssp CCTTTTTGGGCSSEEEEC--------SSTT--SEEEECS
T ss_pred ccccccCCCCcceEEecC--------CCCC--CeEEECC
Confidence 58885 899999752 2111 4789996
No 9
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=14.49 E-value=90 Score=22.05 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=16.4
Q ss_pred ccccc-------CccccccceeecccCCCCCCCcceeeeccC
Q 033819 76 YNECR-------GCKYKCRAEQVPVEGNDPINSAYHYKCVCH 110 (111)
Q Consensus 76 YNECR-------gCk~kC~aeqVPv~~ndP~nSayhy~cvch 110 (111)
-|+|. ||.+-|... | +.++ ..-.|+|.|+
T Consensus 267 ~n~C~~~~~~ng~Cs~~C~~~--p--~~~~--~~~~~~C~C~ 302 (316)
T 1ijq_A 267 VNWCERTTLSNGGCQYLCLPA--P--QINP--HSPKFTCACP 302 (316)
T ss_dssp CCTTSSSSSGGGGCSSEEEEC--C--CCST--TCCSEEEECC
T ss_pred cccccccccCCCCcCcccCCC--c--cccC--CCCCeEeeCC
Confidence 47775 688888632 1 1111 1125789996
No 10
>3r24_B Non-structural protein 10 and non-structural PROT; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} PDB: 2g9t_A 2ga6_A
Probab=13.07 E-value=48 Score=24.92 Aligned_cols=30 Identities=37% Similarity=0.789 Sum_probs=22.8
Q ss_pred CCcccccccc--------Cccccccceeeccc-CCCCCC
Q 033819 71 APTCTYNECR--------GCKYKCRAEQVPVE-GNDPIN 100 (111)
Q Consensus 71 APtCTYNECR--------gCk~kC~aeqVPv~-~ndP~n 100 (111)
|-.|-|=.++ -|++|=+.-|||+. -+|||.
T Consensus 74 ASvClYCRaHi~HP~~dG~C~~KGkfVQiP~~g~~DPi~ 112 (155)
T 3r24_B 74 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVG 112 (155)
T ss_dssp GGGCHHHHHTCCCSSSSSCCSSTTSEEEEEGGGTTCHHH
T ss_pred eeEEEEeeecCCCCCCCceeeccceEEEecccCccCCee
Confidence 4467774332 59999999999996 599984
Done!