Query 033819
Match_columns 111
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 10:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033819.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033819hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyga1 g.86.1.1 (A:6-128) Non 30.7 5.2 0.00038 27.5 0.1 30 71-100 66-104 (123)
2 d2ckaa1 d.76.2.1 (A:2028-2085) 21.9 16 0.0012 21.6 1.2 19 55-73 9-27 (58)
3 d1omca_ g.3.6.1 (A:) Conotoxin 21.7 15 0.0011 19.4 0.9 9 75-83 12-20 (27)
4 d1ijqa2 g.3.11.1 (A:643-692) L 19.6 27 0.002 19.3 1.8 25 80-110 12-36 (50)
5 d1nzia2 g.3.11.1 (A:118-159) C 18.0 19 0.0014 19.4 0.8 11 100-110 17-27 (42)
6 d1wgea1 g.41.17.1 (A:8-77) Del 18.0 18 0.0013 22.0 0.8 14 97-110 16-29 (70)
7 d1plca_ b.6.1.1 (A:) Plastocya 17.9 18 0.0013 21.2 0.8 11 101-111 78-88 (99)
8 d1uw0a_ g.39.1.12 (A:) DNA lig 17.8 11 0.00082 23.8 -0.2 31 78-108 17-56 (117)
9 d3bpse1 g.3.11.1 (E:293-332) L 17.6 22 0.0016 18.9 1.1 22 77-110 3-28 (40)
10 d2jxma1 b.6.1.1 (A:1-97) Plast 14.6 26 0.0019 19.9 0.9 11 101-111 76-86 (97)
No 1
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS coronavirus [TaxId: 227859]}
Probab=30.69 E-value=5.2 Score=27.49 Aligned_cols=30 Identities=37% Similarity=0.761 Sum_probs=22.8
Q ss_pred CCcccccccc--------CccccccceeecccC-CCCCC
Q 033819 71 APTCTYNECR--------GCKYKCRAEQVPVEG-NDPIN 100 (111)
Q Consensus 71 APtCTYNECR--------gCk~kC~aeqVPv~~-ndP~n 100 (111)
|-.|-|=.+. -|++|=+.-|||++. +||+.
T Consensus 66 ASvClYCRaHi~HP~~dG~C~~KGkfVQip~~~~~DPv~ 104 (123)
T d2fyga1 66 ASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVG 104 (123)
T ss_dssp GGGCHHHHHTCCCSSTTCCCSSTTSEEEEEGGGTTCHHH
T ss_pred eeEEEEeeecCCCCCCCceeeecceEEEccCCCcCCCce
Confidence 4457663332 599999999999995 89984
No 2
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.88 E-value=16 Score=21.60 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=15.2
Q ss_pred hhhccccccceecccCCCc
Q 033819 55 AKVMNRNSRRLMIGSTAPT 73 (111)
Q Consensus 55 gg~~~~~~rr~miGStAPt 73 (111)
.....+.+.+.+.|..||+
T Consensus 9 V~Vi~r~tGk~L~G~~AP~ 27 (58)
T d2ckaa1 9 IPVINKVDGTLLVGEDAPR 27 (58)
T ss_dssp CCEEETTTCCEECTTSSCB
T ss_pred EEEEECCCCCCccccCCcC
Confidence 3445688899999999996
No 3
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=21.72 E-value=15 Score=19.36 Aligned_cols=9 Identities=56% Similarity=1.442 Sum_probs=7.8
Q ss_pred ccccccCcc
Q 033819 75 TYNECRGCK 83 (111)
Q Consensus 75 TYNECRgCk 83 (111)
.||-||.|.
T Consensus 12 synccrscn 20 (27)
T d1omca_ 12 SYNCCRSCN 20 (27)
T ss_dssp TTCBSSCEE
T ss_pred ccchhcccC
Confidence 699999984
No 4
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.57 E-value=27 Score=19.30 Aligned_cols=25 Identities=28% Similarity=0.788 Sum_probs=15.1
Q ss_pred cCccccccceeecccCCCCCCCcceeeeccC
Q 033819 80 RGCKYKCRAEQVPVEGNDPINSAYHYKCVCH 110 (111)
Q Consensus 80 RgCk~kC~aeqVPv~~ndP~nSayhy~cvch 110 (111)
-||.+.|- +.-. .-|..-.|.|.|+
T Consensus 12 GGC~h~Cl----~~p~--~~n~~~~y~C~C~ 36 (50)
T d1ijqa2 12 GGCQYLCL----PAPQ--INPHSPKFTCACP 36 (50)
T ss_dssp GGCSSEEE----ECCC--CSTTCCSEEEECC
T ss_pred CCCcCccC----CCcC--cccCCCCEEEeCC
Confidence 36888884 2222 1244557899987
No 5
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.97 E-value=19 Score=19.42 Aligned_cols=11 Identities=36% Similarity=0.612 Sum_probs=8.0
Q ss_pred CCcceeeeccC
Q 033819 100 NSAYHYKCVCH 110 (111)
Q Consensus 100 nSayhy~cvch 110 (111)
|..-.|+|.|+
T Consensus 17 n~~Gsy~C~C~ 27 (42)
T d1nzia2 17 NFIGGYFCSCP 27 (42)
T ss_dssp EETTEEEEECC
T ss_pred cCCCCEEEeCC
Confidence 45567889886
No 6
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.96 E-value=18 Score=22.01 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.8
Q ss_pred CCCCCcceeeeccC
Q 033819 97 DPINSAYHYKCVCH 110 (111)
Q Consensus 97 dP~nSayhy~cvch 110 (111)
||-+..|+|-|.|.
T Consensus 16 dee~~~~~ypCpCG 29 (70)
T d1wgea1 16 DEDSETYFYPCPCG 29 (70)
T ss_dssp BTTTTEEEECCSSS
T ss_pred eCCCCEEEeCCCCC
Confidence 56778899999996
No 7
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}
Probab=17.95 E-value=18 Score=21.24 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=8.9
Q ss_pred CcceeeeccCC
Q 033819 101 SAYHYKCVCHR 111 (111)
Q Consensus 101 Sayhy~cvchr 111 (111)
--|+|.|..|+
T Consensus 78 G~y~Y~C~pH~ 88 (99)
T d1plca_ 78 GEYSFYCSPHQ 88 (99)
T ss_dssp EEEEEECGGGT
T ss_pred ceEEEEeCCCc
Confidence 46999998874
No 8
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.78 E-value=11 Score=23.79 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=19.0
Q ss_pred cccCcccccccee------ecccC---CCCCCCcceeeec
Q 033819 78 ECRGCKYKCRAEQ------VPVEG---NDPINSAYHYKCV 108 (111)
Q Consensus 78 ECRgCk~kC~aeq------VPv~~---ndP~nSayhy~cv 108 (111)
-|++|+.+-.-.+ |+-.. .-++..-||..|+
T Consensus 17 ~Ck~C~~~I~Kg~lRig~~~~~~~~~~~g~~~~W~H~~Cf 56 (117)
T d1uw0a_ 17 GCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCM 56 (117)
T ss_dssp ECTTSSCEECTTCEEEEEEEECTTCSSCCEECCBCCHHHH
T ss_pred ccCCCCccccCCCeEEEEEEeCcccccCCCcCccCCcccc
Confidence 4789987654333 23222 2356788999985
No 9
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.61 E-value=22 Score=18.88 Aligned_cols=22 Identities=41% Similarity=1.106 Sum_probs=14.1
Q ss_pred cccc----CccccccceeecccCCCCCCCcceeeeccC
Q 033819 77 NECR----GCKYKCRAEQVPVEGNDPINSAYHYKCVCH 110 (111)
Q Consensus 77 NECR----gCk~kC~aeqVPv~~ndP~nSayhy~cvch 110 (111)
|||. ||-..|. |.+-.|+|.|+
T Consensus 3 neC~~~nggC~h~C~------------n~~g~~~C~C~ 28 (40)
T d3bpse1 3 NECLDNNGGCSHVCN------------DLKIGYECLCP 28 (40)
T ss_dssp CGGGTGGGGCSSEEE------------ECSSSEEEECC
T ss_pred ccCCCCCCCCcCEEE------------cCCCCEEEECC
Confidence 5663 5777775 23345888886
No 10
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}
Probab=14.58 E-value=26 Score=19.91 Aligned_cols=11 Identities=36% Similarity=0.929 Sum_probs=8.8
Q ss_pred CcceeeeccCC
Q 033819 101 SAYHYKCVCHR 111 (111)
Q Consensus 101 Sayhy~cvchr 111 (111)
--|.|.|.-|.
T Consensus 76 G~y~Y~C~~H~ 86 (97)
T d2jxma1 76 GTYSFYCTPHR 86 (97)
T ss_dssp SEEEEECSSTT
T ss_pred eEEEEEEccCC
Confidence 56999998773
Done!