BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033824
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 90/111 (81%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
MEVGQM+R+ ++Y KS+FMEG LD DE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
+ A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+
Sbjct: 61 SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 90/111 (81%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
M++ Q Q+ L +YTKSLF+EG+LD+ DESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 6 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 65
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
+ +LDQ +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E
Sbjct: 66 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNX-XXXXXXXXDESNPDFVAEVVSLFFADSERLLND 59
M ++ +L S+F G++D D P FVAEVV+LF D++R++++
Sbjct: 1 MAAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISE 60
Query: 60 LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
L LDQP +DF VD++VHQLKGSS+S+GA+++K C+ FR C+++N +G
Sbjct: 61 LAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 9 RLLEYTKSLFMEGVLDNXXXXXXXXXDES-NPDFVAEVVSLFFADSERLLNDLTRALDQP 67
+L S+F +G++D DE P FV+EVV+LF D++R++N++ L+QP
Sbjct: 9 QLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQP 68
Query: 68 TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
++F VD++VHQLKGSS+S+GA+++K C+ FR FC++++ +G
Sbjct: 69 VVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>pdb|2R25|A Chain A, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 167
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 59 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 88
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 57 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 86
>pdb|1C02|A Chain A, Crystal Structure Of Yeast Ypd1p
pdb|1C02|B Chain B, Crystal Structure Of Yeast Ypd1p
Length = 166
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 58 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 87
>pdb|1OXB|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|C Chain C, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|E Chain E, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|G Chain G, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|I Chain I, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|K Chain K, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 166
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 58 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 87
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 59 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 88
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 56 LLNDLTRAL-DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
LL T+ + D+PT+ +++ H HQ G+ N F+ F EEQN+ G
Sbjct: 325 LLQIFTKPVQDRPTLFLEVIQRHNHQGFGAG---------NFNSLFKAFEEEQNLRG 372
>pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
Length = 464
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 71 FKMVDSHV-HQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
+++ +HV H +G S E +K CV R CE I+
Sbjct: 47 LQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
pdb|1XPG|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
Length = 765
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 DFKMVDSHVHQLKGSSSSIGAERIKNACV-AFRNF 103
DF + ++HQL+ SI A R K + AF NF
Sbjct: 655 DFNEIIEYIHQLEFDVISIEASRSKGEIISAFENF 689
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
pdb|1XDJ|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
Length = 766
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 DFKMVDSHVHQLKGSSSSIGAERIKNACV-AFRNF 103
DF + ++HQL+ SI A R K + AF NF
Sbjct: 655 DFNEIIEYIHQLEFDVISIEASRSKGEIISAFENF 689
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
pdb|1XR2|B Chain B, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
Length = 766
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 DFKMVDSHVHQLKGSSSSIGAERIKNACV-AFRNF 103
DF + ++HQL+ SI A R K + AF NF
Sbjct: 655 DFNEIIEYIHQLEFDVISIEASRSKGEIISAFENF 689
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 DFKMVDSHVHQLKGSSSSIGAERIKNACV-AFRNF 103
DF + ++HQL+ SI A R K + AF NF
Sbjct: 655 DFNEIIEYIHQLEFDVISIEASRSKGEIISAFENF 689
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,680,393
Number of Sequences: 62578
Number of extensions: 82926
Number of successful extensions: 153
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 16
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)