BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033824
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 99/111 (89%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
M++ Q Q+ L +YTKSLF+EG+LD+QFLQLQQLQDESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 1 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
+ +LDQ +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E
Sbjct: 61 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
+ Q+QRR ++T SL+ +G LD+QF +L++LQDE +PDFVAEVV+LFF D E+L++++ R
Sbjct: 5 IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
ALDQ +DFK+V S VHQLKGSSSS+GA+R+K CV + C+ QN EG
Sbjct: 65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
V Q+QR+ +Y SL+ +G LDNQF +L++LQDE PDFVAEVVSLFF D +L+N ++
Sbjct: 6 VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSI 65
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
+L++P +DFK VDS VHQLKGSSSS+GA R+KN C++F+ C+ QN EG
Sbjct: 66 SLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
+ Q+QR+ +YT SL+ +G LD+QF +L++LQD+ +PDFV+EV+SLFF D +L++++ R
Sbjct: 5 IAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMAR 64
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
ALD T+DF V + VHQLKGSSSS+GA+R+K CV+F+ CE +N EG
Sbjct: 65 ALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 71/93 (76%)
Query: 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHV 78
M+G LD QF++L++LQD++NP+FV EV +L+F DS RL+N++ +AL++ + DF +DS++
Sbjct: 8 MQGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67
Query: 79 HQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
HQ KGSS+SIGA ++K C FR +C N EG
Sbjct: 68 HQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDES-NPDFVAEVVSLFFADSERLLND 59
M ++ +L S+F +G++D QF QLQ LQDE P FV+EVV+LF D++R++N+
Sbjct: 1 MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60
Query: 60 LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
+ L+QP ++F VD++VHQLKGSS+S+GA+++K C+ FR FC++++ +G
Sbjct: 61 IATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 16 SLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSER-LLNDLTRALDQPTIDFKMV 74
SLF +GVLD QFLQLQQLQDE++P+FV +V++++F +SE+ L N +D+ D+K +
Sbjct: 19 SLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKI 78
Query: 75 DSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
H++QL GSSSSIGA R++N CVAFR+ E N G
Sbjct: 79 GLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1
Length = 295
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 27 FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSS 86
F QL ++ D+ +F +V +F +E + DL +AL+ D K + S H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSLGHFLKGSSA 228
Query: 87 SIGAERIKNACVAFRNFCEEQNIEG 111
+G +++ C +N+ ++ +G
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDG 253
>sp|Q6MEQ3|COAE_PARUW Dephospho-CoA kinase OS=Protochlamydia amoebophila (strain UWE25)
GN=coaE PE=3 SV=1
Length = 203
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 9 RLLEYTKSLFMEGVLDNQFLQLQQLQDESN--PDFVAEVVSLFFADSERLLNDLTRALDQ 66
RLL + + V Q Q+ QD N P F+AEV L+ +D + + + +
Sbjct: 80 RLLTGLEKILHPAVYGEIEQQYQKQQDSKNQFPFFIAEVPLLYESDGAKFFDTIISVVAD 139
Query: 67 PTIDFKMVDSHVHQ 80
P I + +H H+
Sbjct: 140 PEISLQRFKTHTHK 153
>sp|Q54RR8|RDEA_DICDI Phosphorelay intermediate protein rdeA OS=Dictyostelium discoideum
GN=rdeA PE=1 SV=1
Length = 254
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 40 DFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99
+F E++ + + E L +L + + D K H H +KGSSS IG E ++
Sbjct: 28 EFTFELLDSYISSVEEHLPELLNSFE--AKDLKGAVLHSHDIKGSSSYIGCEAVRYVSGK 85
Query: 100 FRNFCEEQNIE 110
+C+ +E
Sbjct: 86 IEAYCKNDELE 96
>sp|B7J0S6|SYI_BORBZ Isoleucine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=ileS
PE=3 SV=1
Length = 1042
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ +SE L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENSETLKEMLNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|C5BS89|NRDR_TERTT Transcriptional repressor NrdR OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=nrdR PE=3 SV=1
Length = 155
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 52 DSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
D E+L N L RAL++ + + +++ +H ++ ++G IK+ + + E QN++
Sbjct: 62 DEEKLRNGLQRALEKRPVSVEAIETALHNVRHYLQALGEREIKSLVIGEKVMEELQNLD 120
>sp|P45011|LPXB_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lpxB PE=3 SV=2
Length = 390
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S++ +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDE 348
>sp|A5UD44|LPXB_HAEIE Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
PittEE) GN=lpxB PE=3 SV=1
Length = 390
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S++ +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDE 348
>sp|Q0SM18|SYI_BORAP Isoleucine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=ileS PE=3
SV=1
Length = 1042
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ ++E L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENNETLQEILNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|O51773|SYI_BORBU Isoleucine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=ileS PE=3 SV=1
Length = 1042
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ ++E L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENNETLKEMLNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|Q4QLM6|LPXB_HAEI8 Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
86-028NP) GN=lpxB PE=3 SV=1
Length = 390
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S + +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDE 348
>sp|A5UII8|LPXB_HAEIG Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
PittGG) GN=lpxB PE=3 SV=1
Length = 390
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S + +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDE 348
>sp|B1XNV4|SYGA_SYNP2 Glycine--tRNA ligase alpha subunit OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=glyQ PE=3 SV=1
Length = 293
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 35 DESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIG-AERI 93
+ SNP+ + ++ SL+ A++++L+ + L P++D+ + SH L + I AER
Sbjct: 204 EASNPEMLFQLFSLYEAEAQQLIE---KGLVMPSLDYVLKCSHTFNLLDARGVIAVAERT 260
Query: 94 K 94
+
Sbjct: 261 R 261
>sp|B2V1Q9|RLMH_CLOBA Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=rlmH PE=3
SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE--RLLN 58
+ VG+++ + L++ + + + L + +LQDE PD +E L D E ++LN
Sbjct: 6 ISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEGNKILN 65
Query: 59 DLTRALDQPTIDFK 72
+ + T+D K
Sbjct: 66 SIKDNMYVITLDLK 79
>sp|B2TRC7|RLMH_CLOBB Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=rlmH PE=3
SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE--RLLN 58
+ VG+++ + L++ + + + L + +LQDE PD +E L D E ++LN
Sbjct: 6 ISVGKLKEKYLKHAIDEYSKRLSRYCKLNILELQDEQTPDNASEKDELIIKDKEGNKILN 65
Query: 59 DLTRALDQPTIDFK 72
+ + T+D K
Sbjct: 66 SIKDNMYVITLDLK 79
>sp|Q9LY82|GLAK2_ARATH Probable glucuronokinase 2 OS=Arabidopsis thaliana GN=GLCAK2 PE=2
SV=1
Length = 366
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 69 IDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
+ F +D+ V++L+ G + C FRN+C+E I+
Sbjct: 70 VQFDSLDNLVYRLENDGYYGGVRLLMAICKVFRNYCKENGIQ 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,061,466
Number of Sequences: 539616
Number of extensions: 1277290
Number of successful extensions: 3654
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3632
Number of HSP's gapped (non-prelim): 39
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)