Query 033824
Match_columns 111
No_of_seqs 193 out of 1017
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 7.4E-31 2.5E-35 181.6 12.0 110 1-110 1-110 (153)
2 1yvi_A Histidine-containing ph 99.9 4.9E-27 1.7E-31 161.4 11.9 108 3-110 3-111 (149)
3 2r25_A Phosphorelay intermedia 99.9 2.6E-22 9E-27 140.2 10.0 90 16-108 2-93 (167)
4 2a0b_A HPT domain; sensory tra 99.8 8.7E-20 3E-24 121.3 6.6 91 15-109 4-94 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 1.6E-18 5.4E-23 115.1 10.1 86 19-109 2-87 (119)
6 3iqt_A Signal transduction his 99.8 4.5E-18 1.5E-22 113.6 9.8 85 20-109 12-96 (123)
7 1y6d_A Phosphorelay protein LU 99.8 3.4E-19 1.2E-23 118.4 3.6 82 27-110 14-95 (120)
8 1sr2_A Putative sensor-like hi 99.6 4.7E-16 1.6E-20 102.8 4.1 71 37-109 28-98 (116)
9 2ooc_A Histidine phosphotransf 99.6 1.2E-15 4.1E-20 100.3 5.0 77 20-106 8-84 (113)
10 1tqg_A Chemotaxis protein CHEA 99.5 5.2E-14 1.8E-18 90.6 7.3 66 42-109 3-79 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 1.3E-12 4.4E-17 88.4 8.7 65 43-109 3-78 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 1E-12 3.5E-17 89.6 5.8 65 43-109 6-81 (146)
13 2lch_A Protein OR38; structura 99.3 2.8E-12 9.5E-17 83.7 7.0 62 43-104 5-72 (113)
14 3kyj_A CHEA3, putative histidi 99.1 2.2E-10 7.5E-15 78.0 6.2 63 42-104 9-77 (144)
15 2lp4_A Chemotaxis protein CHEA 98.9 5.8E-09 2E-13 75.3 7.5 63 43-105 6-74 (225)
16 3uo3_A J-type CO-chaperone JAC 89.0 3 0.0001 28.6 8.2 62 19-82 100-161 (181)
17 3bvo_A CO-chaperone protein HS 85.9 4.2 0.00014 28.5 7.6 48 33-82 144-191 (207)
18 1fpo_A HSC20, chaperone protei 85.2 4.6 0.00016 27.3 7.3 51 30-82 102-152 (171)
19 3hho_A CO-chaperone protein HS 84.4 6 0.00021 26.8 7.7 51 30-82 105-156 (174)
20 1gp8_A Protein (scaffolding pr 77.5 5.9 0.0002 20.7 4.5 24 58-83 15-38 (40)
21 3zsu_A TLL2057 protein, cyanoq 73.7 3.9 0.00013 26.9 3.7 33 51-85 31-63 (130)
22 3ls0_A SLL1638 protein, PSBQ; 72.0 5.9 0.0002 26.1 4.3 34 50-85 32-66 (133)
23 2di0_A Activating signal coint 67.6 6.9 0.00024 23.0 3.5 43 20-62 10-52 (71)
24 2f4m_B UV excision repair prot 62.9 16 0.00055 20.7 4.4 37 25-62 11-47 (61)
25 2cw9_A Translocase of inner mi 61.8 35 0.0012 23.2 9.2 50 46-107 54-104 (194)
26 1h3o_B Transcription initiatio 47.7 41 0.0014 19.8 5.5 50 7-67 8-57 (76)
27 3zta_A MTR, anti-sigma-factor 46.9 53 0.0018 20.8 5.8 67 6-89 58-124 (146)
28 2qsf_X RAD23, UV excision repa 46.6 33 0.0011 23.4 4.5 38 24-62 32-69 (171)
29 2gyq_A YCFI, putative structur 46.5 63 0.0022 21.7 6.1 59 3-65 10-70 (173)
30 1pve_A HHR23B, UV excision rep 43.1 10 0.00035 22.3 1.3 44 26-77 14-57 (72)
31 3qk9_A Mitochondrial import in 40.7 74 0.0025 22.3 5.8 50 46-107 77-127 (222)
32 2p1h_A APAF-1, apoptotic prote 40.3 49 0.0017 19.4 4.3 62 12-77 26-88 (94)
33 2p06_A Hypothetical protein AF 37.4 60 0.002 19.8 4.2 22 55-78 67-88 (114)
34 3qz3_A Ferritin; structural ge 27.4 1.4E+02 0.0048 19.9 5.8 49 14-63 97-146 (184)
35 1vyk_A Oxygen-evolving enhance 26.9 57 0.002 21.6 3.2 29 50-80 52-80 (149)
36 3twe_A Alpha4H; unknown functi 26.3 51 0.0017 15.2 2.0 15 2-16 9-23 (27)
37 3uno_A Probable bacterioferrit 25.8 1.5E+02 0.0053 19.9 6.4 50 14-64 93-143 (189)
38 3fx7_A Putative uncharacterize 23.6 1.3E+02 0.0046 18.4 4.4 22 43-64 58-79 (94)
39 3f0n_A Mevalonate pyrophosphat 23.2 1.3E+02 0.0044 23.2 4.9 31 45-77 238-269 (414)
40 2yad_A Surfactant protein C br 21.9 20 0.00069 24.2 0.1 51 3-53 108-166 (171)
41 3m50_P N.plumbaginifolia H+-tr 21.7 21 0.00071 17.6 0.1 10 76-85 2-11 (31)
42 3e6s_A Ferritin; iron storage, 20.7 1.9E+02 0.0063 18.9 6.4 49 14-63 89-138 (168)
43 2gs4_A Protein YCIF; stress pr 20.2 2E+02 0.0068 19.1 10.2 63 1-66 1-64 (166)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.97 E-value=7.4e-31 Score=181.60 Aligned_cols=110 Identities=75% Similarity=1.168 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHHHHhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033824 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 80 (111)
|++.+|++++.+|++|++++|+||++|.+|++|.++++++|+.+++..|++++++.+..|+.+++.+++|+..+.+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 80 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ 80 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 89999999999999999999999999999999999899999999999999999999999999999876799999999999
Q ss_pred hhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824 81 LKGSSSSIGAERIKNACVAFRNFCEEQNIE 110 (111)
Q Consensus 81 LKGsa~~lGa~~L~~~~~~lE~~~~~gd~~ 110 (111)
|||||+|+||.+|+.+|..||.+|+.++.+
T Consensus 81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 81 FKGSSASIGAQRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999865
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.95 E-value=4.9e-27 Score=161.39 Aligned_cols=108 Identities=44% Similarity=0.852 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHHHHHHHhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 033824 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESN-PDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL 81 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 81 (111)
+++|++|+..++++++++|+||.+|.+|.+|.++++ ++|+.+++..|+++++..+..|+.+++.+++|+..+.+++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 578999999999999999999987999999988778 9999999999999999999999999997645899999999999
Q ss_pred hhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824 82 KGSSSSIGAERIKNACVAFRNFCEEQNIE 110 (111)
Q Consensus 82 KGsa~~lGa~~L~~~~~~lE~~~~~gd~~ 110 (111)
||||+|+||.+|+.+|..+|.+++.++++
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~ 111 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRD 111 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999998864
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.88 E-value=2.6e-22 Score=140.24 Aligned_cols=90 Identities=22% Similarity=0.430 Sum_probs=85.9
Q ss_pred hhhhhcchhH-HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 033824 16 SLFMEGVLDN-QFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALD-QPTIDFKMVDSHVHQLKGSSSSIGAERI 93 (111)
Q Consensus 16 ~~~~~~~ld~-~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~L 93 (111)
+|.+.|+||. +|.+|++|.+++ |+|+.++|..|++++++.+..|++|++ .+ |+..+..++|+|||||+|+||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6778899996 799999998866 999999999999999999999999999 88 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 033824 94 KNACVAFRNFCEEQN 108 (111)
Q Consensus 94 ~~~~~~lE~~~~~gd 108 (111)
..+|..||.+|+.++
T Consensus 79 ~~~C~~le~~~r~~n 93 (167)
T 2r25_A 79 AWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999998
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.80 E-value=8.7e-20 Score=121.29 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=79.5
Q ss_pred HhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 033824 15 KSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIK 94 (111)
Q Consensus 15 ~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~ 94 (111)
.++-+.+++|. ..|.+|.+..|++++.+++..|++++++.+..|+.++..+ |+..+.+.+|+|||+|+++|+.+|+
T Consensus 4 ~~~~~~~~lD~--~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~ 79 (125)
T 2a0b_A 4 ENSKSEALLDI--PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ 79 (125)
T ss_dssp --CHHHHHSCH--HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccCCH--HHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34556678885 4566666657899999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 033824 95 NACVAFRNFCEEQNI 109 (111)
Q Consensus 95 ~~~~~lE~~~~~gd~ 109 (111)
.+|..+|..++.++.
T Consensus 80 ~~~~~lE~~~~~~~~ 94 (125)
T 2a0b_A 80 QLGQQIQSPDLPAWE 94 (125)
T ss_dssp HHHHHHTCTTSTTHH
T ss_pred HHHHHHHHHHHcCCH
Confidence 999999999887653
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.78 E-value=1.6e-18 Score=115.08 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=77.1
Q ss_pred hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033824 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACV 98 (111)
Q Consensus 19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~ 98 (111)
|..++| |.....+. +|+++++.+++.+|+++.|+.+..|+.++..+ |++.+.+.+|+|||+|+++|+++|..+|.
T Consensus 2 ~~~~~D--~~~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~ 76 (119)
T 3myf_A 2 DLHTLN--WDLCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ 76 (119)
T ss_dssp CTTTCC--HHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CccccC--HHHHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 455667 34555544 48999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 033824 99 AFRNFCEEQNI 109 (111)
Q Consensus 99 ~lE~~~~~gd~ 109 (111)
.||++++.|..
T Consensus 77 ~LE~~~r~~~~ 87 (119)
T 3myf_A 77 EIESALKRQTP 87 (119)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999863
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.76 E-value=4.5e-18 Score=113.57 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=76.9
Q ss_pred hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033824 20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99 (111)
Q Consensus 20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~ 99 (111)
.+++| |..+..+. +|+++++.+++.+|+++.++++..|+.++..+ |++.+.+.+|+|||+|+++|+++|..+|..
T Consensus 12 ~~~~D--~~~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLD--WQLALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCC--HHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccC--HHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 35566 44555554 48999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 033824 100 FRNFCEEQNI 109 (111)
Q Consensus 100 lE~~~~~gd~ 109 (111)
||++++.|+.
T Consensus 87 LE~~~r~g~~ 96 (123)
T 3iqt_A 87 IEQQLRSGTK 96 (123)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999864
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.75 E-value=3.4e-19 Score=118.39 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=75.6
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHh
Q 033824 27 FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEE 106 (111)
Q Consensus 27 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~ 106 (111)
|.++.+|++..+++++.+++..|++++++.+..|+.+...+ |+..+.+.+|+|||||+++|+.+|+.+|..+|..+|.
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 46777888778899999999999999999999999988777 8889999999999999999999999999999999999
Q ss_pred hccC
Q 033824 107 QNIE 110 (111)
Q Consensus 107 gd~~ 110 (111)
|+..
T Consensus 92 g~~~ 95 (120)
T 1y6d_A 92 NQLQ 95 (120)
T ss_dssp HHHC
T ss_pred CChh
Confidence 8754
No 8
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.60 E-value=4.7e-16 Score=102.81 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033824 37 SNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNI 109 (111)
Q Consensus 37 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~ 109 (111)
+.+..-.+++..|+++.++++..|..++..+ |+..+.+.+|+|||+++++|+++++.+|..+|.+++.++.
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~ 98 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV 98 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence 3456677899999999999999999999999 9999999999999999999999999999999999998874
No 9
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.58 E-value=1.2e-15 Score=100.31 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=65.4
Q ss_pred hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033824 20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99 (111)
Q Consensus 20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~ 99 (111)
.+.+|. ..|..+. .++++|+.+++..|++++++.+..|..+ .. || .+.+|+|||||+++||.++..+|..
T Consensus 8 ~~~iD~--~~L~~~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDF--AYLEGFA-AGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCH--HHHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCH--HHHHhHh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 455663 4555543 5889999999999999999999999888 44 66 7999999999999999999999999
Q ss_pred HHHHHHh
Q 033824 100 FRNFCEE 106 (111)
Q Consensus 100 lE~~~~~ 106 (111)
+|..++.
T Consensus 78 lE~~~~~ 84 (113)
T 2ooc_A 78 CEAGQES 84 (113)
T ss_dssp HHTTSSC
T ss_pred HHHHhhh
Confidence 9988764
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.50 E-value=5.2e-14 Score=90.62 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033824 42 VAEVVSLFFADSERLLNDLTRALD--------QPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNI 109 (111)
Q Consensus 42 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~---~~gd~ 109 (111)
+.+++..|++++++.+..|+.++. .. ++..+.+.+|+|||+|+++|+..+..+|+.+|..+ +.|+.
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~ 79 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCC
Confidence 478999999999999999999985 34 67899999999999999999999999999999876 56553
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.40 E-value=1.3e-12 Score=88.40 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033824 43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNI 109 (111)
Q Consensus 43 ~~ll~~F~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~---~~gd~ 109 (111)
.+++..|++++++.+..|..++ ... ++..+.+.+|+|||+|+++|+..+..+|+.+|..+ +.|..
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~ 78 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 78 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999998 345 78999999999999999999999999999999865 56653
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.35 E-value=1e-12 Score=89.61 Aligned_cols=65 Identities=18% Similarity=0.439 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HHhhcc
Q 033824 43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNF---CEEQNI 109 (111)
Q Consensus 43 ~~ll~~F~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~---~~~gd~ 109 (111)
.+++..|++++++.++.|+.++ ... ++..+.+.+|+|||+|+++|+..+..+|+.+|.. .+.|..
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~ 81 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM 81 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999998 223 4589999999999999999999999999999987 566653
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.34 E-value=2.8e-12 Score=83.66 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033824 43 AEVVSLFFADSERLLNDLTRALDQ---PTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC 104 (111)
Q Consensus 43 ~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~ 104 (111)
.+++..|++++++.+..|..++.. .+.| +..+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 578999999999999999998731 1113 5679999999999999999999999999999743
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.07 E-value=2.2e-10 Score=78.02 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033824 42 VAEVVSLFFADSERLLNDLTRALD---QPTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC 104 (111)
Q Consensus 42 ~~~ll~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~ 104 (111)
+.+++..|++++++.++.|...+. ..+.| ...+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll 77 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI 77 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence 578899999999999999999863 22224 4578999999999999999999999999999865
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.87 E-value=5.8e-09 Score=75.27 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824 43 AEVVSLFFADSERLLNDLTRAL---DQPTIDF---KMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE 105 (111)
Q Consensus 43 ~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~ 105 (111)
.+++..|++++.+.+..|.+.+ ...+.|. ..+.|.+|+|||+|+++|+..+..+|+.+|....
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~ 74 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD 74 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999885 3333353 5788999999999999999999999999997653
No 16
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=88.99 E-value=3 Score=28.65 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=44.5
Q ss_pred hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK 82 (111)
Q Consensus 19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 82 (111)
+..+|.+.+.--++|.+..+.+-+..+....-....+....|..++..+ ||..+...+.+||
T Consensus 100 d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 100 DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 3445554433334454445666677777778888888889999999999 9999988887765
No 17
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=85.90 E-value=4.2 Score=28.45 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=34.6
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824 33 LQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK 82 (111)
Q Consensus 33 L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 82 (111)
|.+..+.+-+.++...+-....+.+..|..++..+ ||..+...+.+||
T Consensus 144 le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 144 LAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 33334444566666666666666778888999999 9999988887765
No 18
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=85.17 E-value=4.6 Score=27.35 Aligned_cols=51 Identities=8% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824 30 LQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK 82 (111)
Q Consensus 30 L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 82 (111)
|.+.....+.+-+..+....-......+..|..++..+ ||..+...+.+||
T Consensus 102 lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 102 LDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 44444344555666666666666677788888999999 9999998888765
No 19
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=84.43 E-value=6 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824 30 LQQLQDESN-PDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK 82 (111)
Q Consensus 30 L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 82 (111)
|.+.....+ ...+..+....-......+..|..++..+ ||..+...+.+||
T Consensus 105 le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 156 (174)
T 3hho_A 105 LESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLK 156 (174)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 444443445 56677888888888888899999999999 9999999888876
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.45 E-value=5.9 Score=20.65 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 033824 58 NDLTRALDQPTIDFKMVDSHVHQLKG 83 (111)
Q Consensus 58 ~~L~~a~~~~~~D~~~l~~~aH~LKG 83 (111)
++|--|...+ |+++++.+=|+||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 3456678999 99999999999986
No 21
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=73.75 E-value=3.9 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q 033824 51 ADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSS 85 (111)
Q Consensus 51 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa 85 (111)
.++.+++.+|...++.+ ||..++...|.--|..
T Consensus 31 ~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~l 63 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKG--DWQEARNIMRGPLGEM 63 (130)
T ss_dssp HHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHH
Confidence 45667888999999999 9999999988766554
No 22
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=72.01 E-value=5.9 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhhh
Q 033824 50 FADSERLLND-LTRALDQPTIDFKMVDSHVHQLKGSS 85 (111)
Q Consensus 50 ~~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGsa 85 (111)
++++.+++.+ |...++.+ ||..++...|.--|..
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~l 66 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQL 66 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHH
Confidence 3456778888 99999999 9999999999765543
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=67.63 E-value=6.9 Score=23.04 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=35.2
Q ss_pred hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824 20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62 (111)
Q Consensus 20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 62 (111)
..-+++.++++++|....+..|+..++..|=.+.+..+..|-+
T Consensus 10 ~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3345566889999999999999999999998888887776643
No 24
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=62.89 E-value=16 Score=20.70 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=30.9
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824 25 NQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62 (111)
Q Consensus 25 ~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 62 (111)
++|.+++++-. .+|+++..++...-.+.|+.+..|.+
T Consensus 11 Pqf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 46888888876 68999999999999999988887765
No 25
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=61.80 E-value=35 Score=23.24 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=39.0
Q ss_pred HHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033824 46 VSLFFADSERL-LNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQ 107 (111)
Q Consensus 46 l~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~g 107 (111)
...|+..+... +..+..|...+ |.+.++.+ +.-.-+..++..+......|
T Consensus 54 ~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~----------~t~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 54 KDRFLKQCENDIIPNVLEAMISG--ELDILKDW----------CYEATYSQLAHPIQQAKALG 104 (194)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------BCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHh----------cCHHHHHHHHHHHHHHHHCC
Confidence 46788889888 69999999999 99999988 44556666777777665554
No 26
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=47.73 E-value=41 Score=19.81 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 033824 7 QRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQP 67 (111)
Q Consensus 7 ~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~ 67 (111)
+.++.++++.+-....+|+ .-.+++.++.+.|++++-...-.|...=...
T Consensus 8 k~~L~~Lv~~idp~~~ld~-----------~vee~ll~lADdFV~~V~~~ac~lAKhR~s~ 57 (76)
T 1h3o_B 8 KKKLQDLVREVDPNEQLDE-----------DVEEMLLQIADDFIESVVTAACQLARHRKSS 57 (76)
T ss_dssp HHHHHHHHHHHCSSCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566777777765555664 2356788999999999988777777654443
No 27
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=46.89 E-value=53 Score=20.83 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q 033824 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSS 85 (111)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa 85 (111)
|..+..+.++-|+.+|+--+ .|+ -.+..+++.|+.-..++...|..+.. =...++ -|-+||.|
T Consensus 58 lekeiadkvkimfaqgyhie---vlq--------lilekildsfisvireqyhdlqaaas----yittvr--dhifkgts 120 (146)
T 3zta_A 58 LEKEIADKVKIMFAQGYHIE---VLQ--------LILEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKGTS 120 (146)
T ss_dssp HHHHHHHHHHHHHHHTCCTH---HHH--------HHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHH---HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcchH
Confidence 34445555566666665543 221 13456777777776665554443321 012222 48899988
Q ss_pred hhhC
Q 033824 86 SSIG 89 (111)
Q Consensus 86 ~~lG 89 (111)
-.+-
T Consensus 121 fllk 124 (146)
T 3zta_A 121 FLLK 124 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 28
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=46.57 E-value=33 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=30.1
Q ss_pred hHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824 24 DNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62 (111)
Q Consensus 24 d~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 62 (111)
+++|.+++++.. .+|+++..++...-++.|..+..|.+
T Consensus 32 ~Pqf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 32 VEDLLSLRQVVS-GNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 356888888775 69999999999888888887777655
No 29
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=46.52 E-value=63 Score=21.74 Aligned_cols=59 Identities=12% Similarity=0.304 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHH-HHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033824 3 VGQMQRRLLEYTKSLFMEGVLDNQ-FLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRALD 65 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ld~~-~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~ 65 (111)
+..|+.-...+.+.++.- +.+ ..-|..+.. ..+ +-+...+..++++...++..|++.+.
T Consensus 10 ~~~l~dlf~~~L~Diy~a---E~q~~~aL~~~~~~a~~-p~Lk~~l~~H~~eT~~qi~rLe~i~~ 70 (173)
T 2gyq_A 10 IQTMEDLLLHGLRDIYYA---EQQITKALPKMIEQATN-RDLSQGLTSHLEETQKQIERLDQVFK 70 (173)
T ss_dssp BCSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565555666655542 222 234555555 344 55688999999999999999988863
No 30
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=43.08 E-value=10 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 033824 26 QFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSH 77 (111)
Q Consensus 26 ~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~ 77 (111)
+|.+|+++-. .+|+++..++...-.+.|+.+..|.+ |.+.+.++
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~~-------n~e~Fl~l 57 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQISQ-------HQEHFIQM 57 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHHT-------THHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHHH-------CHHHHHHH
Confidence 4667777765 68999999998888888887776654 55555544
No 31
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=40.74 E-value=74 Score=22.35 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=38.3
Q ss_pred HHHHHHHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033824 46 VSLFFADSERL-LNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQ 107 (111)
Q Consensus 46 l~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~g 107 (111)
...|++.+... +..+-.|...+ |.+.++.+ ++-......+..+.+..+.|
T Consensus 77 ~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~l----------lse~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 77 NESFTRHLREYIVPEILEAYVKG--DVKVLKKW----------FSEAPFNVYAAQQKIFKEQD 127 (222)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH----------BCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhh----------cCHHHHHHHHHHHHHHHHCC
Confidence 57788888777 56799999999 99999988 45566666677777666555
No 32
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=40.27 E-value=49 Score=19.40 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=33.3
Q ss_pred HHHHhhhhhcchhHH-HHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 033824 12 EYTKSLFMEGVLDNQ-FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSH 77 (111)
Q Consensus 12 ~~~~~~~~~~~ld~~-~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~ 77 (111)
..+..++..|++.+. ...|..- ....+-...++.......+.....+-.++... ++..+...
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~ 88 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHH
Confidence 344445555666642 3333321 34455666666666666666666666666555 55444444
No 33
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=37.39 E-value=60 Score=19.79 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH
Q 033824 55 RLLNDLTRALDQPTIDFKMVDSHV 78 (111)
Q Consensus 55 ~~l~~L~~a~~~~~~D~~~l~~~a 78 (111)
+...+|+.+++.. ||+.++.-.
T Consensus 67 eemdelreaveke--dwenlrdel 88 (114)
T 2p06_A 67 EEMDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 4457899999999 999988653
No 34
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=27.38 E-value=1.4e+02 Score=19.89 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=30.9
Q ss_pred HHhhhhhcchhHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824 14 TKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRA 63 (111)
Q Consensus 14 ~~~~~~~~~ld~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a 63 (111)
...+..+.-+...+..+..+.. .+|+.. ..++..|+++..+.+..+...
T Consensus 97 e~aL~~Ek~v~~~l~~l~~la~~~~D~~t-~~fLe~fl~EQve~~~~l~~~ 146 (184)
T 3qz3_A 97 RETYQHEQKITQQINKLAHVAFTSQDYST-FNFLQWYVAEQHEEEKLFKGI 146 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666665 455544 566778888887777666544
No 35
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=26.92 E-value=57 Score=21.64 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033824 50 FADSERLLNDLTRALDQPTIDFKMVDSHVHQ 80 (111)
Q Consensus 50 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 80 (111)
+.++.+.|..++..++.+ +|..++...|.
T Consensus 52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~ 80 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRK--AWPSLQNDLRL 80 (149)
T ss_dssp HHHHHHHHHTTHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHH
Confidence 344566677888999999 99999988774
No 36
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.30 E-value=51 Score=15.18 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHh
Q 033824 2 EVGQMQRRLLEYTKS 16 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (111)
|+..|++++.+..+.
T Consensus 9 eledlqerlrklrkk 23 (27)
T 3twe_A 9 ELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666665544
No 37
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=25.79 E-value=1.5e+02 Score=19.85 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHhhhhhcchhHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033824 14 TKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRAL 64 (111)
Q Consensus 14 ~~~~~~~~~ld~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~ 64 (111)
...+.-|.-+.+.+..+..+.. .+|+.. ..++..|+++-.+.+..+...+
T Consensus 93 e~aL~~Ek~v~~~l~~l~~la~~~~D~~t-~~fLe~fL~EQve~~~~l~~~l 143 (189)
T 3uno_A 93 ALALDQERTVTDQVGRLTAVARDEGDFLG-EQFMQWFLQEQIEEVALMATLV 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666667777666 456554 5666789888777777665543
No 38
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.59 E-value=1.3e+02 Score=18.36 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033824 43 AEVVSLFFADSERLLNDLTRAL 64 (111)
Q Consensus 43 ~~ll~~F~~~~~~~l~~L~~a~ 64 (111)
.+.+..|.+.+++.+.=|+..|
T Consensus 58 ~s~l~~f~e~a~e~vp~L~~~i 79 (94)
T 3fx7_A 58 KSTFNEFDEAAQEQIAWLKERI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHhHHHHHHH
Confidence 4456667777777776666554
No 39
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=23.23 E-value=1.3e+02 Score=23.25 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHH
Q 033824 45 VVSLFFAD-SERLLNDLTRALDQPTIDFKMVDSH 77 (111)
Q Consensus 45 ll~~F~~~-~~~~l~~L~~a~~~~~~D~~~l~~~ 77 (111)
....++.+ ++..+..|..++.++ |++.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l 269 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQL 269 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 35667777 789999999999999 99988654
No 40
>2yad_A Surfactant protein C brichos domain; pulmonary surfactant system, interstitial LUNG disease, AMYL chaperone; HET: MSE; 2.20A {Homo sapiens}
Probab=21.85 E-value=20 Score=24.16 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHH--------HhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Q 033824 3 VGQMQRRLLEYT--------KSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADS 53 (111)
Q Consensus 3 ~~~~~~~~~~~~--------~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~ 53 (111)
..+|+++.+++. ++++...+....++.+..+...+|..|+..-+...+.+.
T Consensus 108 Le~L~Rk~~n~Q~~~~~~a~p~~~s~k~~wvk~~~~~S~~~~~Dw~flGspI~~LCgeV 166 (171)
T 2yad_A 108 LEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEV 166 (171)
T ss_dssp HHHHHHHHHHTTCSCCC-------------------------------CHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhhhhhhhccccCcccccccccCcccccccccCHHHhCChHHHHhCcC
Confidence 467888888875 566666666655667777766678888877777766554
No 41
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=21.65 E-value=21 Score=17.59 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=6.5
Q ss_pred HHHHHhhhhh
Q 033824 76 SHVHQLKGSS 85 (111)
Q Consensus 76 ~~aH~LKGsa 85 (111)
+-.|+|||-.
T Consensus 2 rElhTLkghv 11 (31)
T 3m50_P 2 RELHTLKGHV 11 (31)
T ss_dssp HHHHCHHHHH
T ss_pred chhhHHHHHH
Confidence 4568888754
No 42
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=20.74 E-value=1.9e+02 Score=18.94 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=31.5
Q ss_pred HHhhhhhcchhHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824 14 TKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRA 63 (111)
Q Consensus 14 ~~~~~~~~~ld~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a 63 (111)
...+..|.-+...+..+..+.. .+|+.. ..++..|+++..+.+..+...
T Consensus 89 e~aL~~Ek~v~~~l~~l~~la~~~~D~~t-~~fLe~fl~eQve~~~~l~~~ 138 (168)
T 3e6s_A 89 QSILELEQANTRSLLNLAEAASTCHDFAV-MAFLNPFHLQQVNEEDKIGSI 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666667777766 456554 566777988877777666543
No 43
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=20.22 E-value=2e+02 Score=19.05 Aligned_cols=63 Identities=6% Similarity=0.243 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHHHhhhhhcchhHH-HHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033824 1 MEVGQMQRRLLEYTKSLFMEGVLDNQ-FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQ 66 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ld~~-~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~ 66 (111)
|-+..|+.-...+.+.++.- +.+ ..-|..+...-..+-+...+..++++...++..|++.+..
T Consensus 1 m~~~~l~dlf~~~L~D~y~a---E~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~ 64 (166)
T 2gs4_A 1 MNMKTIEDVFIHLLSDTYSA---EKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIERIDQVVES 64 (166)
T ss_dssp --CCSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665542 222 3355555553333556899999999999999999999876
Done!