Query 033826
Match_columns 111
No_of_seqs 119 out of 1071
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.1E-36 3.7E-41 192.3 1.3 75 2-76 1-75 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.4E-36 8.3E-41 195.3 1.7 80 2-81 1-80 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 6.8E-35 2.3E-39 191.6 -0.6 73 1-73 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 6.5E-35 2.2E-39 189.3 -2.5 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 3.4E-34 1.1E-38 189.3 -2.0 70 1-70 9-78 (103)
6 2ky6_A Mediator of RNA polymer 54.0 12 0.0004 26.0 3.2 36 36-71 116-152 (166)
7 3nrf_A APAG protein; structura 51.7 2.8 9.6E-05 27.1 -0.2 44 11-59 21-64 (106)
8 1rja_A Tyrosine-protein kinase 38.1 35 0.0012 20.5 3.4 42 33-74 40-86 (100)
9 1a93_B MAX protein, coiled coi 37.3 34 0.0012 17.5 2.6 27 77-103 6-32 (34)
10 2dm0_A Tyrosine-protein kinase 36.1 35 0.0012 21.5 3.3 41 33-73 52-103 (125)
11 2ekx_A Cytoplasmic tyrosine-pr 34.1 40 0.0014 20.6 3.2 42 32-73 46-98 (110)
12 1r1p_A GRB2-related adaptor pr 32.9 42 0.0014 20.3 3.2 42 33-74 45-90 (100)
13 2yy0_A C-MYC-binding protein; 32.3 45 0.0015 18.5 2.9 45 63-107 4-48 (53)
14 1m2d_A [2Fe-2S] ferredoxin; th 32.0 30 0.001 21.5 2.4 26 44-70 64-90 (110)
15 2dly_A FYN-related kinase; BRK 29.8 56 0.0019 20.4 3.5 42 33-74 54-100 (121)
16 1blj_A P55 BLK protein tyrosin 28.9 49 0.0017 20.3 3.0 42 32-73 49-99 (114)
17 1jyr_A Growth factor receptor- 28.1 37 0.0013 20.4 2.2 42 33-74 40-85 (96)
18 3k2m_A Proto-oncogene tyrosine 27.6 60 0.0021 19.8 3.3 41 33-73 41-86 (112)
19 2zvv_Y Cyclin-dependent kinase 27.4 17 0.00058 17.3 0.4 12 15-26 15-26 (26)
20 1lkk_A Human P56 tyrosine kina 26.8 50 0.0017 19.9 2.7 43 32-74 41-93 (105)
21 2cs0_A Hematopoietic SH2 domai 26.7 69 0.0024 19.9 3.5 42 33-74 51-98 (119)
22 3bbp_D GRIP and coiled-coil do 26.6 58 0.002 19.3 2.8 49 54-102 8-60 (71)
23 2bdq_A Copper homeostasis prot 24.9 42 0.0014 24.1 2.3 41 26-68 40-81 (224)
24 3hvz_A Uncharacterized protein 24.7 58 0.002 19.3 2.6 25 44-68 7-32 (78)
25 2lx9_A Ferrous iron transport 23.9 61 0.0021 19.1 2.7 33 25-57 19-51 (83)
26 2k4y_A FEOA-like protein; GFT 22.6 88 0.003 18.4 3.2 32 26-57 25-56 (86)
27 1zps_A PRA-CH, phosphoribosyl- 22.4 20 0.00069 24.1 0.2 27 27-53 74-100 (138)
28 2k5l_A FEOA; structure, NESG, 22.1 86 0.003 18.1 3.1 32 26-57 22-53 (81)
29 2hdv_A SH2-B PH domain contain 22.0 68 0.0023 19.7 2.7 43 33-75 48-94 (111)
30 1aot_F FYN protein-tyrosine ki 21.2 52 0.0018 19.8 2.0 42 32-73 42-93 (106)
31 2ecd_A Tyrosine-protein kinase 20.9 58 0.002 20.3 2.2 42 32-73 51-97 (119)
32 4d8k_A Tyrosine-protein kinase 20.8 67 0.0023 21.2 2.6 41 33-73 112-162 (175)
33 3ov1_A Growth factor receptor- 20.7 60 0.0021 20.3 2.2 42 33-74 43-88 (117)
34 2h3j_A Hypothetical protein PA 20.5 97 0.0033 17.3 3.0 33 25-57 20-52 (75)
35 2phn_A F420-0:gamma-glutamyl l 20.1 12 0.00043 27.5 -1.3 26 34-59 138-163 (254)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.1e-36 Score=192.29 Aligned_cols=75 Identities=49% Similarity=0.885 Sum_probs=70.2
Q ss_pred CCcccceeEecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccCchHHHHHHHHHcchhhh
Q 033826 2 VRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEER 76 (111)
Q Consensus 2 gR~ki~i~~I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~~~~~ 76 (111)
||+||+|++|+|+.+|++||+||+.||+|||+|||+||||+||||||||+|++|+|+||++++||++|+..++++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~~ 75 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPH 75 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC----
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999877643
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.4e-36 Score=195.32 Aligned_cols=80 Identities=48% Similarity=0.843 Sum_probs=76.0
Q ss_pred CCcccceeEecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccCchHHHHHHHHHcchhhhhcchh
Q 033826 2 VRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 81 (111)
Q Consensus 2 gR~ki~i~~I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~~~~~~~~~~ 81 (111)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|+||++++||++|+..++.+...+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~~ 80 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 80 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEECH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998887665443
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.98 E-value=6.8e-35 Score=191.59 Aligned_cols=73 Identities=41% Similarity=0.651 Sum_probs=70.3
Q ss_pred CCCcccceeEecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccCchHHHHHHHHHcch
Q 033826 1 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYT 73 (111)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~~~ 73 (111)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|+||++..|+++|....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999887643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.98 E-value=6.5e-35 Score=189.32 Aligned_cols=71 Identities=38% Similarity=0.596 Sum_probs=68.7
Q ss_pred CCCcccceeEecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccCchHHHHHHHHHc
Q 033826 1 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYR 71 (111)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~~ 71 (111)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|+||+++++|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=3.4e-34 Score=189.26 Aligned_cols=70 Identities=39% Similarity=0.609 Sum_probs=67.8
Q ss_pred CCCcccceeEecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccCchHHHHHHHHH
Q 033826 1 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYY 70 (111)
Q Consensus 1 MgR~ki~i~~I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~ry~ 70 (111)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||||+|++|+|+||++.++|+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643
No 6
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=54.03 E-value=12 Score=26.01 Aligned_cols=36 Identities=11% Similarity=0.368 Sum_probs=23.9
Q ss_pred hccCCcceeEEEecCCCCccc-ccCchHHHHHHHHHc
Q 033826 36 SVLCDAEVAVIIFSQKGRLYE-FSSSEMQKTLERYYR 71 (111)
Q Consensus 36 s~Lc~~~v~liv~~~~g~~~~-~~s~~~~~vl~ry~~ 71 (111)
+.-|++.|.+++|||+-+.|. |-+-+-..+.++++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~ 152 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQ 152 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHH
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHH
Confidence 345999999999999877766 544344444444443
No 7
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=51.66 E-value=2.8 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=34.7
Q ss_pred ecCCCCcceeccccccchhhhhhhhhccCCcceeEEEecCCCCcccccC
Q 033826 11 IENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59 (111)
Q Consensus 11 I~~~~~R~~tf~kRk~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~~s 59 (111)
+.++.-...||.=.-..|.++.-+|+.+| ++.|+|+|+-|...+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 34445566778888889999999999875 999999998776654
No 8
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=38.14 E-value=35 Score=20.54 Aligned_cols=42 Identities=21% Similarity=0.076 Sum_probs=28.4
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC---chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS---SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 86 (100)
T 1rja_A 40 YVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86 (100)
T ss_dssp EEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHHHHCCT
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 45666665444 5555557787665543 699999999987654
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.25 E-value=34 Score=17.49 Aligned_cols=27 Identities=4% Similarity=-0.021 Sum_probs=20.3
Q ss_pred hcchhhhhhHhhhhhHHHHHHHHHHHh
Q 033826 77 QIDRNGMERYMQVRPLYLNLITFEISL 103 (111)
Q Consensus 77 ~~~~~~~~~~~q~LkE~~~~~~~eI~~ 103 (111)
+.++...+..++.|+..+..++.+|..
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 345556678889999888888888753
No 10
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.09 E-value=35 Score=21.54 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=28.1
Q ss_pred hhhhccC--------CcceeEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 33 YELSVLC--------DAEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 33 ~Els~Lc--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
.-||+.+ .+....|...++|..+.... +++.++|+.|...+
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~ 103 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCC
Confidence 5677776 34456666667776555432 69999999998764
No 11
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=34.07 E-value=40 Score=20.64 Aligned_cols=42 Identities=12% Similarity=0.197 Sum_probs=27.9
Q ss_pred hhhhhccC--------CcceeEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 32 AYELSVLC--------DAEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 32 a~Els~Lc--------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
..-||+.+ .+....|...++|..+.... +++.++|+.|...+
T Consensus 46 ~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~ 98 (110)
T 2ekx_A 46 MYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNS 98 (110)
T ss_dssp CEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSC
T ss_pred CEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCC
Confidence 34567765 34455666666776555433 69999999998765
No 12
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=32.95 E-value=42 Score=20.28 Aligned_cols=42 Identities=17% Similarity=0.372 Sum_probs=27.6
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC--chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS--SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s--~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 45 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 90 (100)
T 1r1p_A 45 FSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSI 90 (100)
T ss_dssp EEEEEECSSSEEEEECEECTTCCEESSSCEESSHHHHHHHHTTSCS
T ss_pred EEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHHHHHHHhCCC
Confidence 45666665444 4455556776554433 699999999987654
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.33 E-value=45 Score=18.49 Aligned_cols=45 Identities=9% Similarity=-0.127 Sum_probs=15.7
Q ss_pred HHHHHHHHcchhhhhcchhhhhhHhhhhhHHHHHHHHHHHhchhh
Q 033826 63 QKTLERYYRYTEERQIDRNGMERYMQVRPLYLNLITFEISLGKRQ 107 (111)
Q Consensus 63 ~~vl~ry~~~~~~~~~~~~~~~~~~q~LkE~~~~~~~eI~~~~~~ 107 (111)
-++|.+|.+........-..+....+.|+...+.+..++...+.+
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665222111112234555666665555555555544443
No 14
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=31.96 E-value=30 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=18.3
Q ss_pred eEEEecCCCCcccccCc-hHHHHHHHHH
Q 033826 44 AVIIFSQKGRLYEFSSS-EMQKTLERYY 70 (111)
Q Consensus 44 ~liv~~~~g~~~~~~s~-~~~~vl~ry~ 70 (111)
.++|+ |+|..|...+| ++.++|+.+.
T Consensus 64 ~v~V~-P~~~~y~~vt~e~v~~il~~~l 90 (110)
T 1m2d_A 64 VVVVY-PDGVWYGQVKPEDVDEIVEKHL 90 (110)
T ss_dssp CEEEE-TTTEEECSCCGGGHHHHHHHTT
T ss_pred EEEEE-eCCEEEecCCHHHHHHHHHHHH
Confidence 34455 88877766664 8899998864
No 15
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.79 E-value=56 Score=20.42 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=28.7
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC---chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS---SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 54 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 100 (121)
T 2dly_A 54 FSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSD 100 (121)
T ss_dssp EEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHHHHHHHTTCCS
T ss_pred eEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHHHHHHHhhCCC
Confidence 45667665444 4555557787776654 699999999987653
No 16
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=28.93 E-value=49 Score=20.29 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=28.5
Q ss_pred hhhhhccC----C--cceeEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 32 AYELSVLC----D--AEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 32 a~Els~Lc----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
..-||+.+ + +....|...++|..+.... +++.++|+.|...+
T Consensus 49 ~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~ 99 (114)
T 1blj_A 49 AFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99 (114)
T ss_dssp CEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSHHHHHHHHHHCC
T ss_pred CEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCHHHHHHHhhhCC
Confidence 34677776 2 4456666666777665443 69999999998764
No 17
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=28.08 E-value=37 Score=20.38 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=27.3
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC--chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS--SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s--~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+-
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 85 (96)
T 1jyr_A 40 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 85 (96)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSCS
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCCC
Confidence 45666665544 4444456676554433 699999999987653
No 18
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=27.55 E-value=60 Score=19.80 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=27.2
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+
T Consensus 41 y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~ 86 (112)
T 3k2m_A 41 RSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 86 (112)
T ss_dssp EEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHHHHHCC
T ss_pred EEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHHHhhCC
Confidence 35666666555 4555557777655433 69999999998753
No 19
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=27.37 E-value=17 Score=17.29 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.7
Q ss_pred CCcceecccccc
Q 033826 15 TSRQVTFSKRRN 26 (111)
Q Consensus 15 ~~R~~tf~kRk~ 26 (111)
++|++-|.+||+
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467777888874
No 20
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=26.76 E-value=50 Score=19.86 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred hhhhhccC-----C--cceeEEEecCCCCcccccC---chHHHHHHHHHcchh
Q 033826 32 AYELSVLC-----D--AEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYTE 74 (111)
Q Consensus 32 a~Els~Lc-----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~~ 74 (111)
..-||+.+ + +....|...++|..+.... +++.++|+.|...+.
T Consensus 41 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LI~~y~~~~~ 93 (105)
T 1lkk_A 41 SFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASD 93 (105)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSHHHHHHHHHHCCT
T ss_pred cEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCHHHHHHHHhhCCC
Confidence 34666765 2 3345555556777655433 699999999987643
No 21
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=26.70 E-value=69 Score=19.94 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=27.6
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC----chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS----SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s----~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+.
T Consensus 51 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~sl~eLV~~y~~~~l 98 (119)
T 2cs0_A 51 YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPI 98 (119)
T ss_dssp EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHHHHHTTSCC
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCCCHHHHHHHHhhCcC
Confidence 45666665444 5555566776555432 699999999987653
No 22
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.61 E-value=58 Score=19.33 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=15.3
Q ss_pred cccccC-chHHHHHHHHHcchhhhhcchh---hhhhHhhhhhHHHHHHHHHHH
Q 033826 54 LYEFSS-SEMQKTLERYYRYTEERQIDRN---GMERYMQVRPLYLNLITFEIS 102 (111)
Q Consensus 54 ~~~~~s-~~~~~vl~ry~~~~~~~~~~~~---~~~~~~q~LkE~~~~~~~eI~ 102 (111)
++.|-. ++.+.+.+.+........-.+. ..+.....|-+.+++++.||+
T Consensus 8 ~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIR 60 (71)
T 3bbp_D 8 PPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIR 60 (71)
T ss_dssp ---------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 344433 5667777777665432222222 122334456688888888885
No 23
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=24.86 E-value=42 Score=24.15 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=28.0
Q ss_pred cchhhhhh-hhhccCCcceeEEEecCCCCcccccCchHHHHHHH
Q 033826 26 NGMLKKAY-ELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLER 68 (111)
Q Consensus 26 ~Gl~KKa~-Els~Lc~~~v~liv~~~~g~~~~~~s~~~~~vl~r 68 (111)
.|+++.|. + +-.++++|.++|. |.|.-|.|+..+++.+.+.
T Consensus 40 ~g~i~~~~~~-~~~~~ipV~vMIR-PR~GdF~Ys~~E~~~M~~D 81 (224)
T 2bdq_A 40 YGVIKEANQY-LHEKGISVAVMIR-PRGGNFVYNDLELRIMEED 81 (224)
T ss_dssp HHHHHHHHHH-HHHTTCEEEEECC-SSSSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhcCCceEEEEC-CCCCCCcCCHHHHHHHHHH
Confidence 47788774 2 3345788888887 6677888887666665443
No 24
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.73 E-value=58 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=19.0
Q ss_pred eEEEecCCCCcccccC-chHHHHHHH
Q 033826 44 AVIIFSQKGRLYEFSS-SEMQKTLER 68 (111)
Q Consensus 44 ~liv~~~~g~~~~~~s-~~~~~vl~r 68 (111)
-+.||.|+|...+++. ..+.++...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3678999999999987 466666543
No 25
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=23.91 E-value=61 Score=19.14 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=28.0
Q ss_pred ccchhhhhhhhhccCCcceeEEEecCCCCcccc
Q 033826 25 RNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF 57 (111)
Q Consensus 25 k~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~ 57 (111)
-..+.++..++-+..|+.|.++-.+|-|.|..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v 51 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEE
Confidence 356788999999999999999999997776654
No 26
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=22.59 E-value=88 Score=18.36 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=27.1
Q ss_pred cchhhhhhhhhccCCcceeEEEecCCCCcccc
Q 033826 26 NGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF 57 (111)
Q Consensus 26 ~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~ 57 (111)
..+.++..++-+..|++|.++-.+|-|.+..+
T Consensus 25 ~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~v 56 (86)
T 2k4y_A 25 SKVRRKIMDMGIVRGTEIYIEGKAPMGDPIAL 56 (86)
T ss_dssp SSHHHHHHHHTCCTTCEEEEEEECTTSCSEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 56888999999999999999988887666554
No 27
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.41 E-value=20 Score=24.09 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=22.2
Q ss_pred chhhhhhhhhccCCcceeEEEecCCCC
Q 033826 27 GMLKKAYELSVLCDAEVAVIIFSQKGR 53 (111)
Q Consensus 27 Gl~KKa~Els~Lc~~~v~liv~~~~g~ 53 (111)
|-+.++.++.+-||.|+.|+.+.|.|.
T Consensus 74 G~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 74 GHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp SCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 445566799999999999999988774
No 28
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=22.09 E-value=86 Score=18.14 Aligned_cols=32 Identities=6% Similarity=0.211 Sum_probs=27.1
Q ss_pred cchhhhhhhhhccCCcceeEEEecCCCCcccc
Q 033826 26 NGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF 57 (111)
Q Consensus 26 ~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~ 57 (111)
..+.++..++-+..|+.|.++-.+|-|.+..+
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~v 53 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQI 53 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 56788999999999999999998887766554
No 29
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Probab=21.97 E-value=68 Score=19.67 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=27.3
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC--chHHHHHHHHHcchhh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS--SEMQKTLERYYRYTEE 75 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s--~~~~~vl~ry~~~~~~ 75 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+..
T Consensus 48 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l~ 94 (111)
T 2hdv_A 48 CVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDMLEHFRVHPIP 94 (111)
T ss_dssp EEEEEEETTEEEEEEEEECTTCCEEETTEEESSHHHHHHHHTTSCCC
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEeCCceeCCHHHHHHHHhhCCcc
Confidence 45666665444 4554556776544322 6999999999876543
No 30
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=21.24 E-value=52 Score=19.82 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=27.3
Q ss_pred hhhhhccC-------CcceeEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 32 AYELSVLC-------DAEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 32 a~Els~Lc-------~~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
..-||+.+ .+....|...++|..+.... +++.++|+.|...+
T Consensus 42 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~ 93 (106)
T 1aot_F 42 AYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERA 93 (106)
T ss_dssp BBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESSHHHHHHHHTTCC
T ss_pred CEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCCHHHHHHHhccCC
Confidence 34666664 23345555556777655443 69999999998754
No 31
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=58 Score=20.32 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=26.8
Q ss_pred hhhhhccCCcce--eEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 32 AYELSVLCDAEV--AVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 32 a~Els~Lc~~~v--~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
..-||+.++-.| ..|...++|..+.... +++.++|+.|...+
T Consensus 51 ~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~ 97 (119)
T 2ecd_A 51 QLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHHHSTVA 97 (119)
T ss_dssp EEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSHHHHHHHHHHCC
T ss_pred CEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCHHHHHHHHhhCC
Confidence 345666665544 3343456777665433 69999999998754
No 32
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=20.83 E-value=67 Score=21.22 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=27.5
Q ss_pred hhhhccC-----C--cceeEEEecCCCCcccccC---chHHHHHHHHHcch
Q 033826 33 YELSVLC-----D--AEVAVIIFSQKGRLYEFSS---SEMQKTLERYYRYT 73 (111)
Q Consensus 33 ~Els~Lc-----~--~~v~liv~~~~g~~~~~~s---~~~~~vl~ry~~~~ 73 (111)
.-||+.+ + +..+.|...++|..+.... +++.++|+.|...+
T Consensus 112 y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~ 162 (175)
T 4d8k_A 112 FSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162 (175)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCC
T ss_pred EEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCC
Confidence 3566665 3 4446665667777665543 69999999998754
No 33
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=20.68 E-value=60 Score=20.26 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=27.5
Q ss_pred hhhhccCCcce--eEEEecCCCCcccccC--chHHHHHHHHHcchh
Q 033826 33 YELSVLCDAEV--AVIIFSQKGRLYEFSS--SEMQKTLERYYRYTE 74 (111)
Q Consensus 33 ~Els~Lc~~~v--~liv~~~~g~~~~~~s--~~~~~vl~ry~~~~~ 74 (111)
.-||+.++-.| ..|...++|..+.... +++.++|+.|...+-
T Consensus 43 y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV~~y~~~~l 88 (117)
T 3ov1_A 43 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSV 88 (117)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTTSCS
T ss_pred EEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHHHHHhhCCC
Confidence 45666666444 4444556676555443 699999999988654
No 34
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=20.48 E-value=97 Score=17.28 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=27.2
Q ss_pred ccchhhhhhhhhccCCcceeEEEecCCCCcccc
Q 033826 25 RNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF 57 (111)
Q Consensus 25 k~Gl~KKa~Els~Lc~~~v~liv~~~~g~~~~~ 57 (111)
-..+.++..++-+..|+.|.++-.+|-|.+..+
T Consensus 20 ~~~~~~rL~~lGl~~G~~v~v~~~~p~~~p~~v 52 (75)
T 2h3j_A 20 SNGYRQRLFSMGLLPGAALRVVRIAPLGDPIQV 52 (75)
T ss_dssp CTTHHHHHHHHTCCTTCEEEEEECCTTSCCCEE
T ss_pred CHHHHHHHHHcCCCCCCEEEEEEECCCCCCEEE
Confidence 356888999999999999999988886665544
No 35
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=20.08 E-value=12 Score=27.49 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.7
Q ss_pred hhhccCCcceeEEEecCCCCcccccC
Q 033826 34 ELSVLCDAEVAVIIFSQKGRLYEFSS 59 (111)
Q Consensus 34 Els~Lc~~~v~liv~~~~g~~~~~~s 59 (111)
+|.-.+|++|++||+.++|.++..+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~ 163 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGV 163 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccC
Confidence 56677899999999999887766544
Done!