BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033829
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 47 YECPLCKVTAPDIKSMQIHHDARHPKLPFDEASL---VNLHAARVDAESS---KPKPG 98
YEC C PD+ H D+ HP + + + + N R DA S K PG
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
>pdb|2KVG|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 45 AKYECPLCKVTAPDIKSMQIH 65
A Y CPLC+ P + SMQ H
Sbjct: 2 APYRCPLCRAGCPSLASMQAH 22
>pdb|2JVY|A Chain A, Solution Structure Of The Eda-Id-Related C417f Mutant Of
Human Nemo Zinc Finger
Length = 28
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 49 CPLCKVTAPDIKSMQIH 65
CP C+ APD+ ++QIH
Sbjct: 6 CPKCQYQAPDMDTLQIH 22
>pdb|2JVX|A Chain A, Solution Structure Of Human Nemo Zinc Finger
Length = 28
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 49 CPLCKVTAPDIKSMQIH 65
CP C+ APD+ ++QIH
Sbjct: 6 CPKCQYQAPDMDTLQIH 22
>pdb|1VD4|A Chain A, Solution Structure Of The Zinc Finger Domain Of Tfiie
Alpha
Length = 62
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 REKGGHAKYECPLCKVTAPDIKSMQIH 65
R+ A ++CP+C T D+++ Q+
Sbjct: 7 RDSTNRASFKCPVCSSTFTDLEANQLF 33
>pdb|3QR9|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QR9|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (apo Structure)
pdb|3QQS|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QQS|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs172)
pdb|3QS8|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QS8|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs174)
pdb|3QSA|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3QSA|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Complex With Inhibitor
Tamu-A7)
pdb|3R6C|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R6C|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs179)
pdb|3R88|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3R88|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs145)
pdb|3TWP|A Chain A, Crystal Structure Of M. Tuberculosis Trpd In Complex
With An Inhibitor
pdb|3TWP|B Chain B, Crystal Structure Of M. Tuberculosis Trpd In Complex
With An Inhibitor
pdb|3TWP|C Chain C, Crystal Structure Of M. Tuberculosis Trpd In Complex
With An Inhibitor
pdb|3TWP|D Chain D, Crystal Structure Of M. Tuberculosis Trpd In Complex
With An Inhibitor
pdb|3UU1|A Chain A, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|B Chain B, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|C Chain C, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
pdb|3UU1|D Chain D, Anthranilate Phosphoribosyltransferase (trpd) From
Mycobacterium Tuberculosis (complex With Inhibitor
Acs142)
Length = 377
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 1 MTGKAKPKKHTAKEIAMKVDAATTNRGGGKAGMADRTGREKGGHAKYECPLCKVTAPD 58
MTG A+P + A +AM + A T AD G G + PL T PD
Sbjct: 52 MTGNARPAQIAAFAVAMTMKAPT----------ADEVGELAGVMLSHAHPLPADTVPD 99
>pdb|2BPQ|A Chain A, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
pdb|2BPQ|B Chain B, Anthranilate Phosphoribosyltransferase (Trpd) From
Mycobacterium Tuberculosis (Apo Structure)
Length = 373
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 1 MTGKAKPKKHTAKEIAMKVDAATTNRGGGKAGMADRTGREKGGHAKYECPLCKVTAPD 58
MTG A+P + A +AM + A T AD G G + PL T PD
Sbjct: 53 MTGNARPAQIAAFAVAMTMKAPT----------ADEVGELAGVMLSHAHPLPADTVPD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,461,901
Number of Sequences: 62578
Number of extensions: 126351
Number of successful extensions: 226
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)