Query 033830
Match_columns 110
No_of_seqs 101 out of 228
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01158 Ribosomal_L36e: Ribos 100.0 1.9E-55 4E-60 311.1 6.9 98 6-103 1-98 (98)
2 PTZ00196 60S ribosomal protein 100.0 9.2E-55 2E-59 307.8 10.4 98 6-103 1-98 (98)
3 KOG3452 60S ribosomal protein 100.0 2.2E-51 4.8E-56 291.5 9.7 99 7-105 4-102 (102)
4 COG5051 RPL36A Ribosomal prote 100.0 9.1E-36 2E-40 209.4 8.2 92 8-99 5-96 (97)
5 KOG2659 LisH motif-containing 46.9 31 0.00067 28.0 3.9 64 36-99 80-150 (228)
6 PRK14132 riboflavin kinase; Pr 38.3 16 0.00035 27.0 1.0 18 41-58 21-38 (126)
7 PF10607 CLTH: CTLH/CRA C-term 37.4 1E+02 0.0023 21.3 5.0 43 53-97 40-82 (145)
8 PF08068 DKCLD: DKCLD (NUC011) 35.5 21 0.00045 23.6 1.0 19 49-67 25-43 (59)
9 PF13058 DUF3920: Protein of u 29.7 53 0.0012 24.6 2.5 28 51-85 97-124 (126)
10 PF12169 DNA_pol3_gamma3: DNA 28.9 2E+02 0.0043 19.8 6.1 53 45-97 4-58 (143)
11 PF01982 CTP-dep_RFKase: Domai 27.3 42 0.00092 24.7 1.6 16 42-57 16-31 (121)
12 PRK14165 winged helix-turn-hel 27.2 31 0.00067 27.3 1.0 17 42-58 110-126 (217)
13 PF04328 DUF466: Protein of un 22.0 71 0.0015 20.9 1.8 22 40-61 9-30 (65)
14 COG1339 Transcriptional regula 21.1 53 0.0011 26.6 1.2 16 43-58 109-124 (214)
No 1
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=100.00 E-value=1.9e-55 Score=311.06 Aligned_cols=98 Identities=66% Similarity=0.979 Sum_probs=84.4
Q ss_pred CCccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033830 6 PNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 6 ~~~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~R 85 (110)
+++||||||||||+||+|+++++||+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|
T Consensus 1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R 80 (98)
T PF01158_consen 1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR 80 (98)
T ss_dssp --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 033830 86 AKKKREEMSNALRKSRAP 103 (110)
Q Consensus 86 AKrK~eel~~vl~~~Rk~ 103 (110)
||+|+|||+|||++||++
T Consensus 81 AKrKrEel~~vl~~~rk~ 98 (98)
T PF01158_consen 81 AKRKREELSNVLAAMRKA 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999974
No 2
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=100.00 E-value=9.2e-55 Score=307.75 Aligned_cols=98 Identities=65% Similarity=1.007 Sum_probs=95.7
Q ss_pred CCccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033830 6 PNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 6 ~~~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~R 85 (110)
+++||||||||||+||+++++++||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|
T Consensus 1 ~~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~R 80 (98)
T PTZ00196 1 PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKR 80 (98)
T ss_pred CCCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 033830 86 AKKKREEMSNALRKSRAP 103 (110)
Q Consensus 86 AKrK~eel~~vl~~~Rk~ 103 (110)
||+|+|||++||++||+.
T Consensus 81 aK~Kreel~~vl~~~rkk 98 (98)
T PTZ00196 81 AKAKRDEIQEALRAQRKK 98 (98)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999973
No 3
>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-51 Score=291.49 Aligned_cols=99 Identities=66% Similarity=0.938 Sum_probs=96.9
Q ss_pred CccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033830 7 NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 86 (110)
Q Consensus 7 ~~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~RA 86 (110)
.+|++|||||||++|+++++||+|+++|.+|+|++||+|||+|||||||||+++||||++|+||||+||+|+|||||+||
T Consensus 4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA 83 (102)
T KOG3452|consen 4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA 83 (102)
T ss_pred ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 033830 87 KKKREEMSNALRKSRAPGG 105 (110)
Q Consensus 87 KrK~eel~~vl~~~Rk~~~ 105 (110)
|+|+|||+|||+++|++++
T Consensus 84 k~KrEELsnvl~~~rk~~~ 102 (102)
T KOG3452|consen 84 KRKREELSNVLAAMRKAHA 102 (102)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999999764
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-36 Score=209.40 Aligned_cols=92 Identities=52% Similarity=0.904 Sum_probs=90.2
Q ss_pred ccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHH
Q 033830 8 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87 (110)
Q Consensus 8 ~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~RAK 87 (110)
.|+++|||+|-+||++...+|||+++|.+++|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+
T Consensus 5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk 84 (97)
T COG5051 5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK 84 (97)
T ss_pred cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 033830 88 KKREEMSNALRK 99 (110)
Q Consensus 88 rK~eel~~vl~~ 99 (110)
.|.|||.++|++
T Consensus 85 aKvEel~~~i~~ 96 (97)
T COG5051 85 AKVEELTSVIQS 96 (97)
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 5
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.88 E-value=31 Score=27.98 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHHhhccch------hHHHHHHHHhhcchhHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Q 033830 36 TSKRVHFVRTVIREVAGFAP------YEKRITELLKVGKDKRALKVAKRKLGTHK-RAKKKREEMSNALRK 99 (110)
Q Consensus 36 ~tkr~kfVr~vIrEV~GfAP------YErr~mELlk~skdKrAlKf~KKRlGth~-RAKrK~eel~~vl~~ 99 (110)
...=..++.++-.|+..-.+ -..+.+|||+.++-..|++|+.-+|--.- ..-.+.++|..++..
T Consensus 80 Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~l 150 (228)
T KOG2659|consen 80 IEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLAL 150 (228)
T ss_pred HHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 33334566666666666555 25699999999999999999999884332 223678888877653
No 6
>PRK14132 riboflavin kinase; Provisional
Probab=38.28 E-value=16 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhccchhHH
Q 033830 41 HFVRTVIREVAGFAPYEK 58 (110)
Q Consensus 41 kfVr~vIrEV~GfAPYEr 58 (110)
...++-++|.+||.||.=
T Consensus 21 ~~Y~~qf~~~LGf~PyPG 38 (126)
T PRK14132 21 PPYKEKFKEKLGFTPYEG 38 (126)
T ss_pred HHHHHHHHHHhCCcCCCC
Confidence 346788999999999963
No 7
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=37.38 E-value=1e+02 Score=21.26 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 033830 53 FAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97 (110)
Q Consensus 53 fAPYErr~mELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl 97 (110)
|.=+-...+|||+.++--.|+.|+++.+ ++- .....+++..++
T Consensus 40 f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~-~~~~~~~l~~~~ 82 (145)
T PF10607_consen 40 FELRCQQFIELLREGDIMEAIEYARKHL-SPF-NDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhh-HHHHHHHHHHHH
Confidence 4445568899999999999999999988 422 223444454443
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=35.47 E-value=21 Score=23.57 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=13.5
Q ss_pred HhhccchhHHHHHHHHhhc
Q 033830 49 EVAGFAPYEKRITELLKVG 67 (110)
Q Consensus 49 EV~GfAPYErr~mELlk~s 67 (110)
.-+|..|++|-+-|+|+.|
T Consensus 25 ~~~G~~P~~R~i~~~i~~G 43 (59)
T PF08068_consen 25 PPYGCSPLKRPIEEYIKYG 43 (59)
T ss_dssp TTSS--GGGS-HHHHHHTE
T ss_pred cccCcCcccCCHHHHHhCC
Confidence 4589999999999999854
No 9
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=29.72 E-value=53 Score=24.57 Aligned_cols=28 Identities=50% Similarity=0.634 Sum_probs=22.3
Q ss_pred hccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033830 51 AGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 51 ~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~R 85 (110)
.|-.|||.|.||- | |..|+-..|-..+|
T Consensus 97 vg~e~yEeR~ie~-----D--Ar~FAe~kl~ey~~ 124 (126)
T PF13058_consen 97 VGKEPYEERWIEK-----D--ARAFAERKLDEYKR 124 (126)
T ss_pred eccchHHHHHHHH-----H--HHHHHHHHHHHHhc
Confidence 7999999999984 5 88999887765443
No 10
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=28.86 E-value=2e+02 Score=19.81 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHhhccchhHH--HHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 033830 45 TVIREVAGFAPYEK--RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97 (110)
Q Consensus 45 ~vIrEV~GfAPYEr--r~mELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl 97 (110)
+-|+++.|..|.|. .+++.|-.++-..|+.++..=+-.-+-...=.++|.+.+
T Consensus 4 e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~ 58 (143)
T PF12169_consen 4 EDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYL 58 (143)
T ss_dssp HHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56899999999998 566667678888899888875544344444444554444
No 11
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=27.30 E-value=42 Score=24.65 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=10.8
Q ss_pred HHHHHHHHhhccchhH
Q 033830 42 FVRTVIREVAGFAPYE 57 (110)
Q Consensus 42 fVr~vIrEV~GfAPYE 57 (110)
..++-++|.+||.||.
T Consensus 16 ~Y~~qf~~~LGf~PyP 31 (121)
T PF01982_consen 16 GYRRQFREKLGFEPYP 31 (121)
T ss_dssp HHHHHHHHHCSS---S
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4678899999999995
No 12
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=27.25 E-value=31 Score=27.32 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.4
Q ss_pred HHHHHHHHhhccchhHH
Q 033830 42 FVRTVIREVAGFAPYEK 58 (110)
Q Consensus 42 fVr~vIrEV~GfAPYEr 58 (110)
..++-++|.+||.||.=
T Consensus 110 ~Y~~~f~~~lGf~PypG 126 (217)
T PRK14165 110 GYKIQFEEKLGFIPYPG 126 (217)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 46788999999999964
No 13
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=21.96 E-value=71 Score=20.86 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhhccchhHHHHH
Q 033830 40 VHFVRTVIREVAGFAPYEKRIT 61 (110)
Q Consensus 40 ~kfVr~vIrEV~GfAPYErr~m 61 (110)
.+.|+..+++++|..-||+=+-
T Consensus 9 ~~~~~~~~r~l~G~~~Ye~Yv~ 30 (65)
T PF04328_consen 9 WRRVRWYARLLVGEPDYERYVE 30 (65)
T ss_pred HHHHHHHHHHhcCcHHHHHHHH
Confidence 4568899999999999998543
No 14
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=21.11 E-value=53 Score=26.63 Aligned_cols=16 Identities=44% Similarity=0.738 Sum_probs=13.5
Q ss_pred HHHHHHHhhccchhHH
Q 033830 43 VRTVIREVAGFAPYEK 58 (110)
Q Consensus 43 Vr~vIrEV~GfAPYEr 58 (110)
-+..++|..||.||.-
T Consensus 109 Y~~qf~ekLGf~PyPG 124 (214)
T COG1339 109 YRRQFREKLGFDPYPG 124 (214)
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3778999999999964
Done!