Query 033830
Match_columns 110
No_of_seqs 101 out of 228
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 11:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033830.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033830hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 38.1 3.3 0.00024 22.6 0.1 8 51-58 15-22 (35)
2 d2hzaa1 a.43.1.3 (A:1-48) Nick 26.7 18 0.0013 20.3 2.1 17 35-51 24-40 (48)
3 d1sfxa_ a.4.5.50 (A:) Hypothet 26.4 35 0.0025 20.5 3.6 16 51-66 16-31 (109)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 26.1 16 0.0012 20.8 1.7 16 36-51 27-42 (50)
5 d3ctaa2 b.43.5.2 (A:90-220) CT 19.6 18 0.0013 24.2 1.1 16 43-58 26-41 (131)
6 d1tuaa1 d.51.1.1 (A:1-84) Hypo 19.2 23 0.0016 21.5 1.5 24 39-64 58-82 (84)
7 d2vbua1 b.43.5.2 (A:2-132) CTP 18.4 20 0.0015 23.9 1.2 15 43-57 26-40 (131)
8 d2hkja2 d.14.1.3 (A:307-470) T 17.2 64 0.0046 22.2 3.8 25 70-94 135-159 (164)
9 d1oywa2 c.37.1.19 (A:1-206) Re 16.6 51 0.0037 20.9 3.0 27 42-68 12-41 (206)
10 d3bqoa1 a.146.1.1 (A:62-265) T 15.5 61 0.0045 23.1 3.4 51 41-99 109-159 (204)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.10 E-value=3.3 Score=22.62 Aligned_cols=8 Identities=75% Similarity=1.194 Sum_probs=6.8
Q ss_pred hccchhHH
Q 033830 51 AGFAPYEK 58 (110)
Q Consensus 51 ~GfAPYEr 58 (110)
.||+|+|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 48999997
No 2
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.72 E-value=18 Score=20.30 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHHHHhh
Q 033830 35 KTSKRVHFVRTVIREVA 51 (110)
Q Consensus 35 ~~tkr~kfVr~vIrEV~ 51 (110)
.-+.|..+|||+||+..
T Consensus 24 gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 24 GYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 35679999999999853
No 3
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.43 E-value=35 Score=20.51 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.0
Q ss_pred hccchhHHHHHHHHhh
Q 033830 51 AGFAPYEKRITELLKV 66 (110)
Q Consensus 51 ~GfAPYErr~mELlk~ 66 (110)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999887754
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.07 E-value=16 Score=20.75 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHhh
Q 033830 36 TSKRVHFVRTVIREVA 51 (110)
Q Consensus 36 ~tkr~kfVr~vIrEV~ 51 (110)
-+.|..+|||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4679999999999853
No 5
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=19.56 E-value=18 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHhhccchhHH
Q 033830 43 VRTVIREVAGFAPYEK 58 (110)
Q Consensus 43 Vr~vIrEV~GfAPYEr 58 (110)
.++-++|.+||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3678899999999964
No 6
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=19.22 E-value=23 Score=21.48 Aligned_cols=24 Identities=25% Similarity=0.485 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHh-hccchhHHHHHHHH
Q 033830 39 RVHFVRTVIREV-AGFAPYEKRITELL 64 (110)
Q Consensus 39 r~kfVr~vIrEV-~GfAPYErr~mELl 64 (110)
...-++++|+++ -||+|= .++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe--~a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPE--KAFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHH--HHGGGG
T ss_pred HHHHHHHHHHHHhCCCChH--HHHHhc
Confidence 456789999999 499994 244544
No 7
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=18.42 E-value=20 Score=23.87 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=13.2
Q ss_pred HHHHHHHhhccchhH
Q 033830 43 VRTVIREVAGFAPYE 57 (110)
Q Consensus 43 Vr~vIrEV~GfAPYE 57 (110)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999994
No 8
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=17.23 E-value=64 Score=22.23 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH
Q 033830 70 KRALKVAKRKLGTHKRAKKKREEMS 94 (110)
Q Consensus 70 KrAlKf~KKRlGth~RAKrK~eel~ 94 (110)
++||..+=++|.+|++-++|.++..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998888777654
No 9
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=16.58 E-value=51 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcc---chhHHHHHHHHhhcc
Q 033830 42 FVRTVIREVAGF---APYEKRITELLKVGK 68 (110)
Q Consensus 42 fVr~vIrEV~Gf---APYErr~mELlk~sk 68 (110)
-++++++|..|| -||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 478999999875 589888888876554
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.53 E-value=61 Score=23.10 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 033830 41 HFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 99 (110)
Q Consensus 41 kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl~~ 99 (110)
.-++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..||..
T Consensus 109 e~i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~~ 159 (204)
T d3bqoa1 109 EEIQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 159 (204)
T ss_dssp HHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 44667777654 5666788999999999999666655556688888888854
Done!