BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033831
(110 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449464004|ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449516703|ref|XP_004165386.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/106 (98%), Positives = 105/106 (99%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 106
>gi|255553542|ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
gi|223543084|gb|EEF44619.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
Length = 156
Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/106 (96%), Positives = 105/106 (99%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELD LKSAFE
Sbjct: 61 YRLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKSAFE 106
>gi|225430537|ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera]
gi|296082163|emb|CBI21168.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/106 (95%), Positives = 105/106 (99%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKII+RIHTTSQSSPMQAYNQAINDLDKELD LK+AFE
Sbjct: 61 YKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFE 106
>gi|356531671|ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
max]
Length = 116
Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/106 (96%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSPMQAYNQ+INDLD+ELD LKSAFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSINDLDRELDHLKSAFE 106
>gi|358248360|ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
gi|255626235|gb|ACU13462.1| unknown [Glycine max]
Length = 116
Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/106 (95%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSPMQAYNQ++NDLD+ELD LKSAFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAFE 106
>gi|224103945|ref|XP_002313254.1| predicted protein [Populus trichocarpa]
gi|118484276|gb|ABK94017.1| unknown [Populus trichocarpa]
gi|222849662|gb|EEE87209.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/106 (94%), Positives = 105/106 (99%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRD+NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+AFE
Sbjct: 61 YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 106
>gi|217070988|gb|ACJ83854.1| unknown [Medicago truncatula]
gi|388519401|gb|AFK47762.1| unknown [Medicago truncatula]
Length = 116
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/106 (93%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKV+YERDTKIINAASFTIERE+HTIGNILRMQLH+D NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVAYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKII+RIHTTSQSSPMQAYNQ+INDLDKELDTLKS FE
Sbjct: 61 YKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFE 106
>gi|388516987|gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/106 (94%), Positives = 103/106 (97%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIERE+HTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSPMQAYNQ+INDLDKELD LK+AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPMQAYNQSINDLDKELDHLKNAFE 106
>gi|297819918|ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/106 (92%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSY+RDTKIINAASFTIERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FE
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106
>gi|147832705|emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
Length = 129
Score = 207 bits (526), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 101/119 (84%), Positives = 105/119 (88%), Gaps = 13/119 (10%)
Query: 1 MNAPDRYERFVVPEGTKK-------------VSYERDTKIINAASFTIEREEHTIGNILR 47
MNAPDRYERFVVPEGTKK VSYERDTKIINAASFT+ERE+HTIGNILR
Sbjct: 1 MNAPDRYERFVVPEGTKKYIVFSLLSQKLSLVSYERDTKIINAASFTVEREDHTIGNILR 60
Query: 48 MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
MQLHRDENVLFAGYKLPHPLQYKII+RIHTTSQSSPMQAYNQAINDLDKELD LK+AFE
Sbjct: 61 MQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFE 119
>gi|15231127|ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|3219858|sp|Q38859.1|RPB11_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|881501|gb|AAB02849.1| RNA polymerase II 13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis thaliana]
gi|332645368|gb|AEE78889.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 116
Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FE
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106
>gi|226504996|ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
gi|194696560|gb|ACF82364.1| unknown [Zea mays]
gi|194699868|gb|ACF84018.1| unknown [Zea mays]
gi|194706942|gb|ACF87555.1| unknown [Zea mays]
gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195628620|gb|ACG36140.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|413937791|gb|AFW72342.1| DNA-directed RNA polymerase II subunit J isoform 1 [Zea mays]
gi|413937792|gb|AFW72343.1| DNA-directed RNA polymerase II subunit J isoform 2 [Zea mays]
gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase II subunit J isoform 3 [Zea mays]
gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase II subunit J isoform 4 [Zea mays]
gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase II subunit J isoform 5 [Zea mays]
Length = 120
Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 101/106 (95%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSP QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFE 106
>gi|413937790|gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 112
Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 101/106 (95%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSP QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFE 106
>gi|242075042|ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
gi|241938640|gb|EES11785.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Length = 117
Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 102/106 (96%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFTIERE+HTIGNI+RMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHTTSQSSP QAY+QA+NDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTTSQSSPTQAYSQAVNDLDKELEYLKQAFE 106
>gi|242047078|ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
gi|241924662|gb|EER97806.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Length = 120
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 101/106 (95%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSP QAY+QA+NDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTMSQSSPTQAYSQAVNDLDKELEYLKQAFE 106
>gi|357159114|ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Brachypodium distachyon]
gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Brachypodium distachyon]
Length = 119
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/106 (89%), Positives = 100/106 (94%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVS+E+DTKI+NAASFTIERE+HTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSP QAYNQAINDLD EL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPTQAYNQAINDLDSELENLKQAFE 106
>gi|115470799|ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA polymerase II 13.6K chain [Oryza sativa
Japonica Group]
gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|215704597|dbj|BAG94225.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 120
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NA SFTIERE+HTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKI+VR+HT +QS+P QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAFE 106
>gi|326495250|dbj|BAJ85721.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518464|dbj|BAJ88261.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525789|dbj|BAJ88941.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 119
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVS+E+DTKI+NAASFTIERE+HTIGNILRMQLHRD NV FAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSP QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 106
>gi|326500404|dbj|BAK06291.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 120
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVS+E+DTKI+NAASFTIERE+HTIGNILRMQLHRD NV FAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSP QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 106
>gi|357111228|ref|XP_003557416.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Brachypodium distachyon]
Length = 120
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/106 (87%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVS+E+DTKI+NAASFTIERE+HTIGNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSSP QAY Q I+DLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTASQSSPTQAYTQGIDDLDKELEILKQAFE 106
>gi|116781365|gb|ABK22069.1| unknown [Picea sitchensis]
gi|116785114|gb|ABK23600.1| unknown [Picea sitchensis]
gi|116790373|gb|ABK25590.1| unknown [Picea sitchensis]
gi|224284720|gb|ACN40091.1| unknown [Picea sitchensis]
Length = 120
Score = 193 bits (491), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE+FVVPEGTKKVSYERD KI+NAA+F IERE+HTIGNI+RMQLHRD NVLFAG
Sbjct: 1 MNAPDRYEKFVVPEGTKKVSYERDMKIMNAATFVIEREDHTIGNIVRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKI++RI TTSQSSPMQAYN AI+DLDKELD LK +FE
Sbjct: 61 YKLPHPLQYKILLRIQTTSQSSPMQAYNLAIDDLDKELDHLKRSFE 106
>gi|449436317|ref|XP_004135939.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449488830|ref|XP_004158185.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/106 (83%), Positives = 97/106 (91%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN PDRYERFVVPEG KKVSYERDTKI+NAA+F +ERE+HTIGNILRMQLHRD+NVLFAG
Sbjct: 1 MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPL+Y+I+VRI T SQSSPMQAYNQAINDLDKELD LK E
Sbjct: 61 YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE 106
>gi|413937800|gb|AFW72351.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 120
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/106 (86%), Positives = 96/106 (90%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD YE FVVPEGTKKVSYERDTKI+NAASFT ERE+HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDHYEHFVVPEGTKKVSYERDTKIVNAASFTDEREDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIVRIHT SQSS QAY QAINDLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVRIHTMSQSSLTQAYTQAINDLDKELEYLKQAFE 106
>gi|334185913|ref|NP_001190064.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|332645369|gb|AEE78890.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 146
Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 104/136 (76%), Gaps = 30/136 (22%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 90
Y+LPHPL+YKIIVR IHTTSQSSPMQAYNQA
Sbjct: 61 YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120
Query: 91 INDLDKELDTLKSAFE 106
INDLDKELD LK+ FE
Sbjct: 121 INDLDKELDYLKNQFE 136
>gi|302783907|ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
gi|302788013|ref|XP_002975776.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300156777|gb|EFJ23405.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300158764|gb|EFJ25386.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
Length = 117
Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 99/106 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKV+YERD K++NA +FTI+RE+HT+GN++RMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVAYERDMKVMNAGAFTIQREDHTVGNVVRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQYKIIV++ TTSQSSP+QAYN A++DLDKEL+ LK AFE
Sbjct: 61 YKLPHPLQYKIIVKVQTTSQSSPIQAYNLALSDLDKELEHLKRAFE 106
>gi|168012942|ref|XP_001759160.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689473|gb|EDQ75844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 96/106 (90%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEG KKV+YERD K++NAA+FT++RE+HTIGNILRMQLHRD +VLFAG
Sbjct: 1 MNAPDRYERFVVPEGMKKVAYERDMKVMNAATFTLQREDHTIGNILRMQLHRDPSVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPLQY+++V+I T SQSSPMQAYN AI DL KELD LK+ FE
Sbjct: 61 YKLPHPLQYRVVVKIQTNSQSSPMQAYNLAITDLTKELDHLKATFE 106
>gi|168000755|ref|XP_001753081.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695780|gb|EDQ82122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 117
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 81/106 (76%), Positives = 97/106 (91%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEG KKV+YERD K++NAA+FT+ERE+HT+GN++RMQLHRD +VLFAG
Sbjct: 1 MNAPDRYERFVVPEGMKKVAYERDMKVMNAATFTVEREDHTVGNVIRMQLHRDPSVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPLQY+++V+I TTSQSSPMQAYN AI DL KELD LK+ FE
Sbjct: 61 YRLPHPLQYRLVVKIQTTSQSSPMQAYNLAITDLIKELDHLKAVFE 106
>gi|125557390|gb|EAZ02926.1| hypothetical protein OsI_25066 [Oryza sativa Indica Group]
gi|125599273|gb|EAZ38849.1| hypothetical protein OsJ_23266 [Oryza sativa Japonica Group]
Length = 135
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 82/91 (90%)
Query: 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
+ VSYERDTKI+NA SFTIERE+HTIGNILRMQLHRD NVLFAGYKLPHPLQYKI+VR+
Sbjct: 31 CRWVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRV 90
Query: 76 HTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
HT +QS+P QAY QAINDLDKEL+ LK AFE
Sbjct: 91 HTANQSTPTQAYTQAINDLDKELENLKQAFE 121
>gi|413937799|gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]
Length = 75
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ER +HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVERVDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRI 75
YKLPHPLQYKIIVR+
Sbjct: 61 YKLPHPLQYKIIVRV 75
>gi|356516832|ref|XP_003527097.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Glycine max]
Length = 90
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 70/74 (94%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTI NILRMQLHRD NVLF G
Sbjct: 1 MNALDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIDNILRMQLHRDPNVLFVG 60
Query: 61 YKLPHPLQYKIIVR 74
YKLPHPLQYKIIVR
Sbjct: 61 YKLPHPLQYKIIVR 74
>gi|413937801|gb|AFW72352.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 75
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 71/75 (94%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD YE FVVPEGTKKVSYERDTKI+NAASFT ERE+HT+GNILRMQLHRD NVLFAG
Sbjct: 1 MNAPDHYEHFVVPEGTKKVSYERDTKIVNAASFTDEREDHTVGNILRMQLHRDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRI 75
YKLPHPLQYKIIVR+
Sbjct: 61 YKLPHPLQYKIIVRV 75
>gi|413937810|gb|AFW72361.1| hypothetical protein ZEAMMB73_595234 [Zea mays]
Length = 208
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 75/90 (83%), Gaps = 11/90 (12%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
++VSYERDTKI+NAASFT+ERE+HT+GNILRMQLHRD NVLFAGYKLPHPLQYKIIVR
Sbjct: 121 RRVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVR-- 178
Query: 77 TTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
AY QAINDLDKEL+ LK AFE
Sbjct: 179 ---------AYTQAINDLDKELEYLKQAFE 199
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 45/48 (93%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRM 48
MN PDRYE FVV EGTKKVSYERDTKI+NAASFT+ERE+HT+GNILR+
Sbjct: 1 MNVPDRYEHFVVSEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRI 48
>gi|384244757|gb|EIE18255.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 122
Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 82/106 (77%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+ERFVVP+G K+S E+DTK+ NAA+FT++RE+HT+GN++RMQL RD+ V FAG
Sbjct: 1 MNAPDRFERFVVPDGVPKISLEKDTKVTNAATFTLQREDHTVGNLVRMQLLRDKEVTFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPL Y I++++ T + SP + + A+ DL E + +++ F+
Sbjct: 61 YKFPHPLDYHILIKVQTKGKKSPREVMDDALTDLCDEFEDIRAKFQ 106
>gi|356577658|ref|XP_003556941.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Glycine max]
Length = 75
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 66/75 (88%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYERFVVPEGTKK SYE DTKIINA+SFTIE EEHTI NILRMQLHRD NVL
Sbjct: 1 MNAPDRYERFVVPEGTKKFSYEMDTKIINASSFTIEXEEHTINNILRMQLHRDPNVLIVR 60
Query: 61 YKLPHPLQYKIIVRI 75
YKLPH LQYKIIVR+
Sbjct: 61 YKLPHALQYKIIVRL 75
>gi|255080692|ref|XP_002503919.1| predicted protein [Micromonas sp. RCC299]
gi|226519186|gb|ACO65177.1| predicted protein [Micromonas sp. RCC299]
Length = 101
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 80/101 (79%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P R E+FV+P+G +K+++ RDTK+ NA ++ +++E+HT+GNI+RMQLHRD NV+FAG
Sbjct: 1 MNQPSRAEKFVLPDGVRKLTFTRDTKVANAGTYVVQKEDHTLGNIVRMQLHRDPNVVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101
Y++PHP +I++++HT SSPMQA +++N L +E+ L
Sbjct: 61 YQVPHPSDNRIVIKVHTNKNSSPMQAMTESVNCLSEEVSRL 101
>gi|145348497|ref|XP_001418684.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578914|gb|ABO96977.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 81/105 (77%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P R +RFV+PEG +K+SYERDTK+ NA +F ++RE+HTIGN+LRM+LH++ +V+FAG
Sbjct: 1 MNQPSRADRFVLPEGERKLSYERDTKVENAGTFVLQREDHTIGNLLRMELHKNPDVVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHP ++I++++HT + ++P+QA A+ +L E+ L F
Sbjct: 61 YKNPHPTDHRIVLKVHTNANTTPVQALRDAVTNLRAEVGDLSQQF 105
>gi|384486353|gb|EIE78533.1| hypothetical protein RO3G_03237 [Rhizopus delemar RA 99-880]
Length = 145
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+PEG KKV E DTKI NAA+F +ERE+HT+GN+LR QL +D VLFAG
Sbjct: 1 MNAPDRFELFVIPEGKKKVEMEVDTKIPNAATFIVEREDHTLGNMLRGQLLKDPRVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107
YK+PHPL++ I+++ + +SP +A A ++L E++ LK+ F+
Sbjct: 61 YKVPHPLEHNFIIKVQSVPGTSPGKALKDATSELISEINALKNKFDM 107
>gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae]
Length = 119
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 79/108 (73%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R + +++PEG +KV+YE+DTKI NA FTI RE+HT+GN++RMQL RD NV+F+G
Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYEKDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVMFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFL 108
Y+ PHPL + I VR+ T SSP++A +++DL E D + F L
Sbjct: 61 YRHPHPLIHDITVRVQTNDASSPVEALANSLDDLSTEFDEIAQKFRRL 108
>gi|301093050|ref|XP_002997374.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
Length = 119
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R + +++PEG +KV+YE+DTKI NA FTI RE+HT+GN++RMQL RD NV F+G
Sbjct: 1 MNAPNRSDSYLLPEGAQKVTYEKDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFL 108
Y+ PHPL + I VR+ T SSP++A +++DL E D + F L
Sbjct: 61 YRHPHPLIHDITVRVQTNDASSPVEALANSLDDLSTEFDEIAQKFRRL 108
>gi|111226740|ref|XP_642530.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74861274|sp|Q86JJ5.1|RPB11_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|90970744|gb|EAL68596.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 120
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 83/105 (79%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+P+G KKV+ RDTKI NA+ FTI +E+HTIGN++RMQL D++++FAG
Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL++ + +RI T + ++P++ +++ L +E +L+++F
Sbjct: 61 YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105
>gi|325193331|emb|CCA27671.1| DNAdirected RNA polymerase II subunit J putative [Albugo laibachii
Nc14]
Length = 120
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R + + +P+G +KVSYE+DTKI NA FTI RE+HTIGN++RMQ RD NV F+G
Sbjct: 1 MNAPNRSDSYTLPDGAQKVSYEKDTKIPNAGKFTILREDHTIGNLIRMQSLRDPNVTFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFL 108
Y+ PHPL + I+VRI T SSP++A ++DL D L F L
Sbjct: 61 YRHPHPLNHDIVVRIQTNDASSPVEALANCLDDLSTVFDELVKKFRRL 108
>gi|241566022|ref|XP_002402072.1| RNA polymerases L, putative [Ixodes scapularis]
gi|215499963|gb|EEC09457.1| RNA polymerases L, putative [Ixodes scapularis]
gi|442757575|gb|JAA70946.1| Putative rna polymerase subunit l [Ixodes ricinus]
Length = 117
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 79/106 (74%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ E+DTK+ NAA FT+ +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMIRAQLLKDPCVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K I+R+ TT S+P +A+ AI DL EL L+ F+
Sbjct: 61 YKVPHPLEHKFILRVQTTPDSTPQEAFTNAITDLISELSLLEERFK 106
>gi|432858786|ref|XP_004068938.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oryzias latipes]
Length = 141
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+S +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 25 MNAPPAFESFLLFEGEKKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAG 84
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 85 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 129
>gi|47211212|emb|CAF90169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 117
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+S +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKISINKDTKVPNACLFTLNKEDHTLGNIIRAQLMKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|348540573|ref|XP_003457762.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oreochromis niloticus]
Length = 117
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+S +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|410926916|ref|XP_003976914.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Takifugu rubripes]
Length = 117
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+S +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKISINKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|113931298|ref|NP_001039095.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
gi|89268974|emb|CAJ83522.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
Length = 117
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HTIGNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|332867975|ref|XP_003339459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
1 [Pan troglodytes]
gi|332867977|ref|XP_003339460.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
2 [Pan troglodytes]
Length = 116
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFELFLLFEGEKKITINKDTKVSNACLFTINKEDHTLGNIIKTQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|157136940|ref|XP_001663871.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Aedes aegypti]
gi|108869812|gb|EAT34037.1| AAEL013700-PA [Aedes aegypti]
Length = 117
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL++K ++RI TTS SP +A+ AI DL EL + F+
Sbjct: 61 YKLPHPLEHKFVIRIQTTSDYSPQEAFMNAITDLLSELSLFEERFK 106
>gi|147902930|ref|NP_001088910.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
laevis]
gi|56788744|gb|AAH88797.1| LOC496260 protein [Xenopus laevis]
Length = 117
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HTIGNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|125985605|ref|XP_001356566.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|195147658|ref|XP_002014796.1| GL18757 [Drosophila persimilis]
gi|54644890|gb|EAL33630.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|194106749|gb|EDW28792.1| GL18757 [Drosophila persimilis]
Length = 117
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 78/106 (73%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TT++ SP +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTAEYSPQEAFMNAITDLLAELSLFEERFK 106
>gi|390459035|ref|XP_002744022.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like,
partial [Callithrix jacchus]
Length = 114
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|170037676|ref|XP_001846682.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
gi|167880966|gb|EDS44349.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
Length = 117
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKLPHPL++K ++RI TTS SP +A+ AI DL EL + F
Sbjct: 61 YKLPHPLEHKFVIRIQTTSDYSPQEAFMNAITDLLSELSLFEERF 105
>gi|5453932|ref|NP_006225.1| DNA-directed RNA polymerase II subunit RPB11-a [Homo sapiens]
gi|82697397|ref|NP_001032560.1| DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|157786902|ref|NP_001099391.1| polymerase (RNA) II (DNA directed) polypeptide J [Rattus
norvegicus]
gi|188219604|ref|NP_035423.2| DNA-directed RNA polymerase II subunit RPB11 [Mus musculus]
gi|350537195|ref|NP_001232039.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|126314418|ref|XP_001366429.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Monodelphis domestica]
gi|149755994|ref|XP_001504521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Equus
caballus]
gi|291415582|ref|XP_002724029.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Oryctolagus cuniculus]
gi|297680126|ref|XP_002817856.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pongo
abelii]
gi|301780882|ref|XP_002925859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ailuropoda melanoleuca]
gi|326931232|ref|XP_003211737.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Meleagris gallopavo]
gi|335284198|ref|XP_003124442.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Sus scrofa]
gi|335284200|ref|XP_003354537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Sus scrofa]
gi|344289757|ref|XP_003416607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Loxodonta africana]
gi|345801173|ref|XP_003434782.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Canis
lupus familiaris]
gi|348568806|ref|XP_003470189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cavia
porcellus]
gi|403285780|ref|XP_003934189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Saimiri
boliviensis boliviensis]
gi|410059453|ref|XP_003949275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pan
troglodytes]
gi|426254733|ref|XP_004021031.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Ovis
aries]
gi|1710661|sp|P52435.1|RPB11_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a;
Short=RNA polymerase II subunit B11-a; Short=RPB11a;
AltName: Full=DNA-directed RNA polymerase II subunit
J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit
gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|1220358|gb|AAD05361.1| RNA polymerase II [Homo sapiens]
gi|1730469|emb|CAA67075.1| RNA polymerase II subunit [Homo sapiens]
gi|4165267|emb|CAA57785.1| RNA polymerase II subunit [Homo sapiens]
gi|18848196|gb|AAH24165.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|27781313|gb|AAH42939.1| Polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|41351295|gb|AAH65711.1| POLR2J protein [Homo sapiens]
gi|74177404|dbj|BAE34594.1| unnamed protein product [Mus musculus]
gi|79160201|gb|AAI08227.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Bos
taurus]
gi|123992951|gb|ABM84077.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|123999873|gb|ABM87445.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|146218587|gb|AAI39903.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|146327795|gb|AAI41831.1| POLR2J protein [Homo sapiens]
gi|148687376|gb|EDL19323.1| polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|149063001|gb|EDM13324.1| polymerase (RNA) II (DNA directed) polypeptide J (predicted)
[Rattus norvegicus]
gi|158254462|dbj|BAF83204.1| unnamed protein product [Homo sapiens]
gi|197129074|gb|ACH45572.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|197129075|gb|ACH45573.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|296472981|tpg|DAA15096.1| TPA: DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|351698747|gb|EHB01666.1| DNA-directed RNA polymerase II subunit RPB11-a [Heterocephalus
glaber]
gi|380783319|gb|AFE63535.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|384944160|gb|AFI35685.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|410212832|gb|JAA03635.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410252394|gb|JAA14164.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410295166|gb|JAA26183.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|431898190|gb|ELK06885.1| DNA-directed RNA polymerase II subunit RPB11-a [Pteropus alecto]
gi|440908432|gb|ELR58446.1| DNA-directed RNA polymerase II subunit RPB11-a [Bos grunniens
mutus]
gi|1589095|prf||2210288A RNA polymerase II
Length = 117
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|2500634|sp|O08740.1|RPB11_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J; AltName:
Full=RNA polymerase II 13.3 kDa subunit; AltName:
Full=RPB14
gi|2081616|dbj|BAA19918.1| RNA polymerase II subuunit RPB14 [Mus musculus]
Length = 117
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|225708058|gb|ACO09875.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
Length = 117
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTLSKEDHTLGNIIRSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|410059467|ref|XP_003949277.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
3 [Pan troglodytes]
Length = 144
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFELFLLFEGEKKITINKDTKVSNACLFTINKEDHTLGNIIKTQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|198423020|ref|XP_002125909.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide J [Ciona intestinalis]
Length = 117
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+S +DTK+ NAA FT+ +E+HT+GNILR QL +D VLFAG
Sbjct: 1 MNAPPAFETFLLFDGEKKISITKDTKVPNAAHFTVNKEDHTLGNILRTQLLKDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K I+R+ TT SP +A+ AI DL E+ L+ F+
Sbjct: 61 YKVPHPLEHKFILRVQTTGDYSPQEAFTNAITDLISEISLLEERFK 106
>gi|11595485|emb|CAC18368.1| RPB11a protein [Homo sapiens]
Length = 127
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|417408018|gb|JAA50583.1| Putative rna polymerase subunit l, partial [Desmodus rotundus]
Length = 138
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 22 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 81
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 82 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 126
>gi|317587873|ref|NP_001187715.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
gi|225706696|gb|ACO09194.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
gi|308323781|gb|ADO29026.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
Length = 117
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|19921456|ref|NP_609836.1| Rpb11 [Drosophila melanogaster]
gi|194758938|ref|XP_001961713.1| GF15107 [Drosophila ananassae]
gi|194880502|ref|XP_001974452.1| GG21750 [Drosophila erecta]
gi|195035867|ref|XP_001989393.1| GH10081 [Drosophila grimshawi]
gi|195114074|ref|XP_002001592.1| GI16585 [Drosophila mojavensis]
gi|195401096|ref|XP_002059150.1| GJ16235 [Drosophila virilis]
gi|195438427|ref|XP_002067138.1| GK24832 [Drosophila willistoni]
gi|195483889|ref|XP_002090472.1| GE13140 [Drosophila yakuba]
gi|195579746|ref|XP_002079722.1| GD21874 [Drosophila simulans]
gi|11387116|sp|Q9VJE4.1|RPB11_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.3 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|7298381|gb|AAF53606.1| Rpb11 [Drosophila melanogaster]
gi|190615410|gb|EDV30934.1| GF15107 [Drosophila ananassae]
gi|190657639|gb|EDV54852.1| GG21750 [Drosophila erecta]
gi|193905393|gb|EDW04260.1| GH10081 [Drosophila grimshawi]
gi|193912167|gb|EDW11034.1| GI16585 [Drosophila mojavensis]
gi|194156024|gb|EDW71208.1| GJ16235 [Drosophila virilis]
gi|194163223|gb|EDW78124.1| GK24832 [Drosophila willistoni]
gi|194176573|gb|EDW90184.1| GE13140 [Drosophila yakuba]
gi|194191731|gb|EDX05307.1| GD21874 [Drosophila simulans]
gi|343962697|gb|AEM72514.1| MIP32452p1 [Drosophila melanogaster]
Length = 117
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TT+ SP +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106
>gi|66773140|ref|NP_001019571.1| polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|66267264|gb|AAH95123.1| Polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|182890238|gb|AAI65488.1| Polr2j protein [Danio rerio]
Length = 117
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++K+++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|209737046|gb|ACI69392.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|221219392|gb|ACM08357.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|225704470|gb|ACO08081.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225714848|gb|ACO13270.1| DNA-directed RNA polymerase II subunit RPB11-a [Esox lucius]
Length = 117
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITIIKDTKVPNACLFTLNKEDHTLGNIIRQQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|410984536|ref|XP_003998584.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Felis catus]
Length = 117
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKXPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|308322417|gb|ADO28346.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus furcatus]
Length = 117
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI+R QL +D VLFAG
Sbjct: 1 MNAPLAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KI++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|402588406|gb|EJW82339.1| RNA polymerase II subunit [Wuchereria bancrofti]
Length = 166
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F+V +G KK++ E+DTK+ NAA FT+ +E+HTIGN+L+ QL +D VLFAG
Sbjct: 1 MNAPAPFESFLVFDGEKKIAIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++K I+R+ TTS ++P A AI DL EL + F
Sbjct: 61 YKCPHPLEHKFILRVQTTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|312090992|ref|XP_003146821.1| RNA polymerase II [Loa loa]
Length = 124
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F+V +G KK++ E+DTK+ NAA FT+ +E+HTIGN+L+ QL +D VLFAG
Sbjct: 1 MNAPAPFESFLVFDGEKKITIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++K I+R+ TTS ++P A AI DL EL + F
Sbjct: 61 YKCPHPLEHKFILRVQTTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|412986323|emb|CCO14749.1| predicted protein [Bathycoccus prasinos]
Length = 118
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 81/106 (76%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P R E+F++P G++K+SY DTK+ NA F + RE+HT+GN+LRM+LH D NV+FAG
Sbjct: 1 MNQPSRAEKFLMPPGSRKLSYTPDTKLANAGEFVLMREDHTLGNMLRMELHNDPNVVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHP ++I++++HT +++P++A +A L +++++LK+ +E
Sbjct: 61 YQHPHPTDHRILIKVHTNGETNPVRAMREANQRLTEQVESLKTQWE 106
>gi|440794029|gb|ELR15200.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 122
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+ +E FV+ EG KK+SY DTKI NAA+F IE+E+HTIGN+LRMQL D +V+FAG
Sbjct: 1 MNKPESHELFVLKEGEKKISYLPDTKIQNAATFNIEKEDHTIGNLLRMQLLSDPDVVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++ ++++ T SSP+ A A+ DL E + L F
Sbjct: 61 YKVPHPLKHTTVIKVQTNHNSSPVAAMTNALTDLLSEFNLLSERF 105
>gi|393911983|gb|EFO17249.2| DNA-directed RNA polymerase II subunit RPB11-a [Loa loa]
Length = 117
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F+V +G KK++ E+DTK+ NAA FT+ +E+HTIGN+L+ QL +D VLFAG
Sbjct: 1 MNAPAPFESFLVFDGEKKITIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++K I+R+ TTS ++P A AI DL EL + F
Sbjct: 61 YKCPHPLEHKFILRVQTTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|74177357|dbj|BAE34581.1| unnamed protein product [Mus musculus]
Length = 117
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLF G
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFVG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|343962687|gb|AEM72509.1| MIP32352p1 [Drosophila melanogaster]
Length = 117
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TT+ SP +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELFLFEERFK 106
>gi|387914122|gb|AFK10670.1| polymerase (RNA) II (DNA directed) polypeptide J [Callorhinchus
milii]
Length = 117
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GN +R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTLGNTIRSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++K+++R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|58393315|ref|XP_319985.2| AGAP009209-PA [Anopheles gambiae str. PEST]
gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|55235548|gb|EAA14713.2| AGAP009209-PA [Anopheles gambiae str. PEST]
Length = 117
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKLPHPL++K ++RI TTS+ SP +A+ AI DL EL + F
Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105
>gi|156542813|ref|XP_001607873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Nasonia vitripennis]
Length = 117
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FTI +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL++K ++RI TTS +P +A+ A+ DL EL + F+
Sbjct: 61 YKLPHPLEHKFVIRIQTTSDHTPHEAFMNAVTDLIAELSLFEERFK 106
>gi|324533414|gb|ADY49303.1| DNA-directed RNA polymerase II subunit RPB11 [Ascaris suum]
Length = 117
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KKV++++DTK+ NAA FTI +E+HT+GN+++ QL +D VLFAG
Sbjct: 1 MNAPAAFESFLIFDGEKKVTFQKDTKVPNAAIFTINKEDHTLGNLIKHQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++K I+RI TTS +SP A AI DL EL + F
Sbjct: 61 YKNPHPLEHKFILRIQTTSDTSPSDALTSAITDLMAELSLFEERF 105
>gi|427786191|gb|JAA58547.1| Putative rna polymerases l [Rhipicephalus pulchellus]
Length = 117
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 78/106 (73%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KKV+ E+DTK+ NAA FT+ +E+HT+ N++R QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFDGEKKVTIEKDTKVPNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K I+R+ TT ++P +A+ AI DL EL L+ F+
Sbjct: 61 YKVPHPLEHKFILRVQTTPDNTPQEAFTNAITDLISELSLLEERFK 106
>gi|281203019|gb|EFA77220.1| hypothetical protein PPL_12430 [Polysphondylium pallidum PN500]
Length = 1177
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+PEG KKVS +DT+I NA FTI +E+HT+GN++RMQL D ++ FAG
Sbjct: 18 MNAPDRFELFVLPEGAKKVSMTKDTRIPNACLFTILKEDHTVGNLIRMQLVGDPDIKFAG 77
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFLD 109
Y++PHPL++ I ++I T S+P+QA +I+ L E ++ +F+D
Sbjct: 78 YRMPHPLEHNIAIKIQTYPHSTPIQALEGSIHCLIDEFQKIE--LQFMD 124
>gi|256078288|ref|XP_002575428.1| DNA-directed rna polymerase II 13.3 kD polypeptide [Schistosoma
mansoni]
gi|226489581|emb|CAX74941.1| hypotherical protein [Schistosoma japonicum]
gi|226489583|emb|CAX74942.1| hypotherical protein [Schistosoma japonicum]
gi|226489585|emb|CAX74943.1| hypotherical protein [Schistosoma japonicum]
gi|360043356|emb|CCD78769.1| putative dna-directed rna polymerase II 13.3 kD polypeptide
[Schistosoma mansoni]
Length = 110
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 77/105 (73%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+S+E+DT++ NAA FT+ RE+HT+GN++ QL +D VLFAG
Sbjct: 1 MNAPASFEPFLLADGEKKISFEKDTQVPNAAIFTLNREDHTVGNMITCQLLKDPRVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++KI++R+HT ++P+ + A+ DL E+ ++ F
Sbjct: 61 YKAPHPLEHKIVIRVHTAHPATPVDVFVSALKDLISEISNIEEQF 105
>gi|389609993|dbj|BAM18608.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11 [Papilio
xuthus]
Length = 117
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KKV E DTK+ NAA FT+ +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P +A+ A+ DL EL + F+
Sbjct: 61 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNALTDLTSELSLFEERFK 106
>gi|346470095|gb|AEO34892.1| hypothetical protein [Amblyomma maculatum]
gi|346470103|gb|AEO34896.1| hypothetical protein [Amblyomma maculatum]
Length = 117
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK++ E+DTK+ NAA FT+ +E+HT+ N++R QL +D VLFAG
Sbjct: 1 MNAPPAFEAFLLFDGEKKITIEKDTKVPNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K I+R+ TT +P +A+ AI DL EL L+ F+
Sbjct: 61 YKVPHPLEHKFILRVQTTPDCTPQEAFTNAITDLISELSLLEERFK 106
>gi|195344678|ref|XP_002038908.1| GM17133 [Drosophila sechellia]
gi|194134038|gb|EDW55554.1| GM17133 [Drosophila sechellia]
Length = 105
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 73/98 (74%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDHNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKEL 98
YK+PHPL++K ++RI TT+ SP +A+ AI DL E
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAEF 98
>gi|33359678|gb|AAP97076.1| RNA polymerase II subunit [Branchiostoma belcheri]
Length = 135
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NAA FT+ +E+HT+GN+LR QL +D V+FAG
Sbjct: 1 MNAPPTFESFLLFEGEKKITITKDTKVPNAAIFTVNKEDHTLGNLLRAQLLKDPQVIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++K ++R+ TT SP +A+ AI DL E+ L+ F
Sbjct: 61 YKVPHPLEHKFVLRVQTTPDYSPQEAFTNAITDLISEVSLLEERF 105
>gi|307188715|gb|EFN73365.1| DNA-directed RNA polymerase II subunit RPB11 [Camponotus
floridanus]
Length = 117
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FTI +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERFK 106
>gi|332030496|gb|EGI70184.1| DNA-directed RNA polymerase II subunit RPB11 [Acromyrmex
echinatior]
Length = 137
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FTI +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERFK 106
>gi|66530114|ref|XP_624001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis
mellifera]
gi|380030239|ref|XP_003698760.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Apis
florea]
gi|383860640|ref|XP_003705797.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Megachile rotundata]
gi|307206928|gb|EFN84774.1| DNA-directed RNA polymerase II subunit RPB11 [Harpegnathos
saltator]
Length = 117
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FT+ +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERFK 106
>gi|330843149|ref|XP_003293524.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
gi|325076130|gb|EGC29943.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
Length = 120
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+PEG KKV+ RDTKI NA+ F I +E+HT+GN++RMQL D +++FAG
Sbjct: 1 MNAPDRFELFVLPEGAKKVTMTRDTKIPNASMFVILKEDHTVGNLVRMQLVADPDIIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y++PHPL++ + +RI T ++P+ + ++I L E ++ F+
Sbjct: 61 YRMPHPLEHNVNIRIQTNQNTTPLDSIKKSIECLTNEFLNIEDQFK 106
>gi|328869614|gb|EGG17991.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1128
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+P+ KK+S +DTKI NA FTI +E+HT+GN++RMQL D +V FAG
Sbjct: 1 MNAPDRFELFVLPDDAKKISMTKDTKIPNACMFTILKEDHTLGNLIRMQLVGDPDVKFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL++ I ++I T QS+P+QA +I+ L E L+ F
Sbjct: 61 YRMPHPLEHNITIKIQTFPQSTPIQALEGSIHCLIDEFQKLEIGF 105
>gi|91090444|ref|XP_966925.1| PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide [Tribolium castaneum]
gi|270013848|gb|EFA10296.1| hypothetical protein TcasGA2_TC012511 [Tribolium castaneum]
Length = 117
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+ E+DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS SP +A +I DL EL + F+
Sbjct: 61 YKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERFK 106
>gi|391324947|ref|XP_003737003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Metaseiulus occidentalis]
Length = 117
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 78/106 (73%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK++ E+DTK+ NA+ FTI +E+HT+GN++R QL +D V FAG
Sbjct: 1 MNAPPTFECFLLFDGEKKITIEKDTKVPNASIFTINKEDHTLGNMIRAQLLKDPLVTFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPL++KI++R+ TT S+P++A AINDL EL + F+
Sbjct: 61 YKNPHPLEHKILLRVQTTPDSTPVEALKSAINDLMSELSLFEERFQ 106
>gi|290561711|gb|ADD38255.1| DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus
salmonis]
Length = 117
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK++ E+DTK+ NA+ FTI +E+HT+GN++R QL +D NVLF G
Sbjct: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPL+ KII+RI TTS +P+ A AI DL EL + +F+
Sbjct: 61 YKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFK 106
>gi|357608007|gb|EHJ65777.1| putative DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Danaus plexippus]
Length = 117
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 75/106 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KKV E DTK+ NAA FT+ +E+H++GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFK 106
>gi|340711267|ref|XP_003394200.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus terrestris]
gi|350411736|ref|XP_003489439.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus impatiens]
Length = 117
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FT+ +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTSDYTPHDAFMHAITDLIAELSLFEERFK 106
>gi|168277626|dbj|BAG10791.1| RPB11b2 protein [synthetic construct]
Length = 158
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL +EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERF 104
>gi|321474423|gb|EFX85388.1| hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex]
Length = 117
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E+DTK+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPSFESFLLFEGEKKIIVEQDTKVPNAAIFTVNKEDHTLGNMIRCQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK PHPL++K I+RI +T SP A AI DL EL L+ F
Sbjct: 61 YKQPHPLEHKFILRIQSTPAYSPHDALMNAITDLISELSLLEERF 105
>gi|62088376|dbj|BAD92635.1| MGC13098 protein variant [Homo sapiens]
Length = 180
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 23 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 81
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL +EL L+ F
Sbjct: 82 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERF 126
>gi|196012022|ref|XP_002115874.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
gi|190581650|gb|EDV21726.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
Length = 116
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 76/106 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ KK++ +DTK+ NA FTI +E+HT+GNI+R QL +D V+FAG
Sbjct: 1 MNAPAPFEHFLLLPDEKKITITKDTKVPNACHFTIAKEDHTLGNIIRAQLLKDPQVIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+Y +++R+ TTS SP +A++ A+ DL EL+ L F+
Sbjct: 61 YKVPHPLEYDVVIRVQTTSNYSPEEAFSNALTDLISELNVLDDRFK 106
>gi|332634984|ref|NP_001091084.2| DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
gi|74725005|sp|Q9GZM3.1|RPB1B_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1;
Short=RNA polymerase II subunit B11-b1; Short=RPB11b1;
AltName: Full=DNA-directed RNA polymerase II subunit J2
gi|11595474|emb|CAC18329.1| RPB11b1alpha protein [Homo sapiens]
gi|11595483|emb|CAC18332.1| RPB11b1alpha protein [Homo sapiens]
Length = 115
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|167525603|ref|XP_001747136.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774431|gb|EDQ88060.1| predicted protein [Monosiga brevicollis MX1]
Length = 119
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 79/105 (75%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD +E F + +G K++YE D+K+ NA +F + RE+HT+GN+L QL +D VLFAG
Sbjct: 1 MNAPDPFESFRLEDGEAKITYEPDSKVPNAGTFRMNREDHTVGNLLASQLAKDPRVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++ I++R+HTT+Q SP +A QA++D+ ++ L+S+
Sbjct: 61 YKVPHPLEHYILLRVHTTAQYSPKEALKQALHDVIYDVAHLQSSL 105
>gi|355560539|gb|EHH17225.1| hypothetical protein EGK_13571 [Macaca mulatta]
gi|355747568|gb|EHH52065.1| hypothetical protein EGM_12433 [Macaca fascicularis]
Length = 158
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|238231721|ref|NP_001154047.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225703638|gb|ACO07665.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
Length = 117
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 74/105 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITIIKDTKVPNACLFTLNKEDHTLGNIIKQQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++K ++R+ TT SP +A+ I DL EL L+ F
Sbjct: 61 YKVPHPLEHKTVIRVQTTPDYSPQEAFTNVITDLISELSLLEERF 105
>gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2;
Short=RNA polymerase II subunit B11-b2; Short=RPB11b2;
AltName: Full=DNA-directed RNA polymerase II subunit J3
gi|11595478|emb|CAC18331.1| RPB11b2alpha protein [Homo sapiens]
gi|30172701|gb|AAP22342.1| unknown [Homo sapiens]
gi|162318032|gb|AAI56864.1| Polymerase (RNA) II (DNA directed) polypeptide J3 [synthetic
construct]
Length = 115
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|443693124|gb|ELT94560.1| hypothetical protein CAPTEDRAFT_4697 [Capitella teleta]
Length = 130
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA +E F++ +G KKV+ E+DTK+ NAA FT+ +E+HT+GN LR QL +D VLFAG
Sbjct: 1 MNAQPTFETFLLFDGEKKVTIEKDTKVPNAAIFTVNKEDHTLGNALRTQLLKDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ K ++RI T ++ SP +A+ AI DL E+ L+ F+
Sbjct: 61 YKVPHPLENKFVLRIQTVAEYSPQEAFTNAITDLMAEVSLLEENFK 106
>gi|302831972|ref|XP_002947551.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
gi|300267415|gb|EFJ51599.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
Length = 120
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 76/106 (71%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN PDRY +FV+PEG +KV+Y+ DTK+ +A +F+ E+HT+GN+LRMQLH D+ ++FAG
Sbjct: 1 MNQPDRYVQFVLPEGERKVNYKADTKLKDAGTFSFRSEDHTMGNLLRMQLHSDKAMVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y++PHPL+ ++V++ T SP +A A+ DL E + + F+
Sbjct: 61 YRIPHPLEPVMVVKVQTNGTKSPEEAMVHALQDLASEFGYMLNEFD 106
>gi|19401711|gb|AAL87672.1|AF468111_1 DNA-directed RNA polymerase II subunit 11 [Homo sapiens]
Length = 158
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|328771902|gb|EGF81941.1| hypothetical protein BATDEDRAFT_23695 [Batrachochytrium
dendrobatidis JAM81]
Length = 125
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 72/96 (75%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP +E +VPEG KK+S E DTKI NAA+FT+ +E+HT+GNILRMQL ++ V+FAGY
Sbjct: 3 NAPPTWELLLVPEGMKKISMEMDTKIPNAATFTVLKEDHTLGNILRMQLLKNPKVIFAGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
K+PHPL+++ I++I TT ++P Q + +L +E
Sbjct: 63 KVPHPLEHQFILKIQTTPDTTPADVLQQEVANLIQE 98
>gi|339522065|gb|AEJ84197.1| DNA-directed RNA polymerase II subunit J-1 [Capra hircus]
Length = 117
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 72/102 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
M AP +E F++ EG K ++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MTAPPAFESFLLFEGEKNITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK+PHP ++KII+R+ TT SP +A+ AI DL EL L+
Sbjct: 61 YKVPHPWEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102
>gi|62739171|ref|NP_116581.3| DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
Length = 115
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ A FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|332374220|gb|AEE62251.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 74/106 (69%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ KK+ E+DTK+ NAA FTI +E+HT+GN++R QL +D +VLFAG
Sbjct: 1 MNAPPTFESFLLFGSEKKIDREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPSVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL++K ++RI TTS SP A AI DL EL + F+
Sbjct: 61 YKLPHPLEHKFVLRIQTTSDYSPQDALMHAITDLISELSLFEERFK 106
>gi|156372989|ref|XP_001629317.1| predicted protein [Nematostella vectensis]
gi|156216314|gb|EDO37254.1| predicted protein [Nematostella vectensis]
Length = 117
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+ +E F++ +G KK++ +DTK+ NAA F + +E+HT+GN+LR QL +D V+FAG
Sbjct: 1 MNAPEPFEPFLLLDGDKKITITKDTKVPNAAHFVVNKEDHTLGNLLREQLLKDPQVIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL++K ++R+ TTS SP +A+ AI DL E+ L+ F+
Sbjct: 61 YKVSHPLEHKFVLRVQTTSDYSPQEAFTHAITDLISEVSLLEERFK 106
>gi|449675933|ref|XP_004208520.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Hydra
magnipapillata]
Length = 117
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+ +E F++ +G KK++ +DTK+ NAA FT+ +E+HT+GN++R QL +D V+FAG
Sbjct: 1 MNAPESFEPFLLLDGEKKINIVKDTKVPNAAHFTVMKEDHTLGNLIRSQLLKDPQVIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y++PHPL++K VRI TT SP +A+ AI DL E+ L+ F+
Sbjct: 61 YRVPHPLEHKFNVRIQTTPDYSPQEAFTSAITDLLSEISLLEERFK 106
>gi|149641980|ref|XP_001514119.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ornithorhynchus anatinus]
Length = 117
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 73/105 (69%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VL
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLLQE 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|242003519|ref|XP_002422761.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
Length = 117
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+ E D K+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLFDGEKKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TTS +P A AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERFK 106
>gi|327287597|ref|XP_003228515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Anolis carolinensis]
Length = 117
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 74/105 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ ++TK+ NA FTI +E+HT+GN++++QL D VLFAG
Sbjct: 1 MNAPLAFESFLLFEGEKKIAINKNTKVPNACLFTINKEDHTLGNVIKLQLLEDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL++KII+ + TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVLHPLEHKIIIWVQTTPDYSPQEAFTDAITDLISELSILEERF 105
>gi|449295408|gb|EMC91430.1| hypothetical protein BAUCODRAFT_127330 [Baudoinia compniacensis
UAMH 10762]
Length = 122
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 74/105 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KKV++E +T++ NAA FT +E+HT+GN+LR +L + +VLFA
Sbjct: 1 MNAPDRFELFLLGEGEKKVTFEIETRVPNAALFTFNKEDHTLGNLLRAKLTKSPHVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL +R+ T + SP +A QA NDL KEL TL F
Sbjct: 61 YQVPHPLFAVFKLRVQTDGEISPKEAVVQACNDLVKELQTLDQEF 105
>gi|159471075|ref|XP_001693682.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158283185|gb|EDP08936.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 115
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN PDRY +FV+PEG +KV Y+ DTK+ +A +FT E+HTIGN+LRMQLH D++ +FAG
Sbjct: 1 MNQPDRYVQFVLPEGERKVKYKADTKLKDAGTFTFRSEDHTIGNLLRMQLHADKSTVFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y++PHPL+ ++V++ T S A A+ DL E + F+
Sbjct: 61 YRIPHPLEPVMVVKVQTNGTKSCEDAMMHALEDLANEYHIMLEEFD 106
>gi|308480489|ref|XP_003102451.1| CRE-RPB-11 protein [Caenorhabditis remanei]
gi|308261183|gb|EFP05136.1| CRE-RPB-11 protein [Caenorhabditis remanei]
Length = 122
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK PHPL++KI++RI TTSQ++P A AI DL EL L+
Sbjct: 60 YKNPHPLEHKILLRIQTTSQTTPADALTTAITDLVGELSLLE 101
>gi|448089577|ref|XP_004196845.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|448093877|ref|XP_004197876.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359378267|emb|CCE84526.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359379298|emb|CCE83495.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 70/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++PEG KV DTK+ NAA IERE+HT+ N+LR QL +DE VLFA
Sbjct: 1 MNAPDRFELFILPEGVDKVKIAPDTKVPNAAIIKIEREDHTLANLLRAQLLKDEKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP +A A + L ELD +K+ F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPREALRNACSALIGELDIIKTRFK 106
>gi|242247465|ref|NP_001156261.1| DNA-directed RNA polymerase II subunit RPB11-a [Acyrthosiphon
pisum]
gi|239799164|dbj|BAH70515.1| ACYPI008208 [Acyrthosiphon pisum]
Length = 117
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+ E DTK+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYDGEKKIVKEVDTKVTNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPL++K +RI TTS +P A +I DL EL + F+
Sbjct: 61 YKQPHPLEHKFELRIQTTSDYTPQDALTNSITDLLAELSLFEERFK 106
>gi|50424419|ref|XP_460797.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
gi|49656466|emb|CAG89138.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
Length = 122
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IERE+HT+GN++R QL +DE VLFA
Sbjct: 1 MNAPDRFELFILPDGVDKIKITPDTKVPNAALIKIEREDHTLGNLIRAQLLKDERVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP +A A + L ELD +K+ F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPREALRNACSGLIGELDVIKTRFK 106
>gi|413937805|gb|AFW72356.1| hypothetical protein ZEAMMB73_054239 [Zea mays]
Length = 68
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 54/59 (91%)
Query: 48 MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
MQLHRD NVLFAGYKLPHPLQYKIIVRIHTTSQSSP QAY QAINDLDKEL+ LK AFE
Sbjct: 1 MQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFE 59
>gi|449018281|dbj|BAM81683.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 133
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDR+E V+PEG KK+ Y DT++ N ASF IERE+HT+ N LR QL RD NVLFA Y
Sbjct: 5 NLPDRFESIVLPEGVKKLRYVPDTRLPNCASFVIEREDHTLANALRAQLLRDRNVLFAAY 64
Query: 62 KLPHPLQYKIIVRIHT-TSQSSPMQAYNQAINDLDKELDTLKSAF 105
++PHPL++ +I+++ T S+ +P++A A+ L E+ L+ F
Sbjct: 65 RVPHPLEHHVILKVQTRRSEYTPLEALCAALVALKNEIHVLEDEF 109
>gi|340377747|ref|XP_003387390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Amphimedon queenslandica]
Length = 117
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK++ +DTK+ NAA FT+ +E+HT+GN+L QL D VLF+G
Sbjct: 1 MNAPATFESFLLLDGEKKITVTKDTKVPNAAIFTVFKEDHTLGNLLMHQLLNDPQVLFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TT+ SP +A + A+ DL E+ +++ F+
Sbjct: 61 YKVPHPLEHKFVLRIQTTADYSPQEALSNALTDLISEVTKIETRFK 106
>gi|241948087|ref|XP_002416766.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
gi|223640104|emb|CAX44350.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
Length = 124
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IERE+HT+ N+LR QL +DE VLFA
Sbjct: 1 MNAPDRFELFILPDGVDKIKIIPDTKVPNAAIVKIEREDHTLANLLRAQLLKDERVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL ++R+ T SP +A A + L ELD +KS F
Sbjct: 61 YKVEHPLFANFVLRVQTEDDYSPREALQNACSSLISELDVIKSKF 105
>gi|303271317|ref|XP_003055020.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462994|gb|EEH60272.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 152
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 35/140 (25%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P R E+FV+P+G +K+++ RDTK+ NA +F +++E+HT+GN +RMQLHRD V+F+G
Sbjct: 1 MNQPSRAEKFVLPDGVRKLTFTRDTKVANAGTFVVQKEDHTLGNAVRMQLHRDPEVVFSG 60
Query: 61 YKLPHPLQYKIIVR-----------------------------------IHTTSQSSPMQ 85
Y++PHP +I+++ +HTT SSPMQ
Sbjct: 61 YQVPHPSDNRIVIKVRAASAQSLGFLFLSAVRTRDPLALTARPPPSRPQVHTTKNSSPMQ 120
Query: 86 AYNQAINDLDKELDTLKSAF 105
A +A++ L E+ + F
Sbjct: 121 AMTEAVDCLRTEITDISQKF 140
>gi|25012186|gb|AAN71209.1| GM15177p [Drosophila melanogaster]
Length = 136
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 19/125 (15%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRM------------ 48
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRKYVGQQARLITHE 60
Query: 49 -------QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101
QL +D NVLFAGYK+PHPL++K ++RI TT+ SP +A+ AI DL EL
Sbjct: 61 ICILACSQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLF 120
Query: 102 KSAFE 106
+ F+
Sbjct: 121 EERFK 125
>gi|344304502|gb|EGW34734.1| RNA polymerase II core subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 122
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IERE+HT+ N+LR QL +DE V+FA
Sbjct: 1 MNAPDRFELFILPDGVDKIKITPDTKVPNAAIIKIEREDHTLANLLRNQLLKDEKVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL ++RI T SP +A A + L ELD +KS F
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPREALKNACSGLISELDAIKSRF 105
>gi|170586962|ref|XP_001898248.1| RNA polymerase II. [Brugia malayi]
gi|158594643|gb|EDP33227.1| RNA polymerase II., putative [Brugia malayi]
Length = 133
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 16/121 (13%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRM------------ 48
MNAP +E F+V +G KK++ E+DTK+ NAA FT+ +E+HTIGN+L+
Sbjct: 1 MNAPAPFESFLVFDGEKKIAIEKDTKVPNAAIFTVNKEDHTIGNLLKQFAAKIFHKSYFG 60
Query: 49 ----QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSA 104
QL +D VLFAGYK PHPL++K I+R+ TTS ++P A AI DL EL +
Sbjct: 61 TFCSQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPEDALTSAITDLMAELSLFEER 120
Query: 105 F 105
F
Sbjct: 121 F 121
>gi|341892406|gb|EGT48341.1| CBN-RPB-11 protein [Caenorhabditis brenneri]
Length = 122
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPL++KI++RI TT+ ++P A AI DL EL L+ F+
Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLERRFD 105
>gi|238879406|gb|EEQ43044.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Candida
albicans WO-1]
Length = 124
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IERE+HT+ N+LR QL +D+ VLFA
Sbjct: 1 MNAPDRFELFILPDGVDKIKIIPDTKVPNAAIVKIEREDHTLANLLRAQLLKDDRVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL ++RI T SP +A A + L ELD +KS F
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPREALQNACSGLISELDVIKSKF 105
>gi|193671627|ref|XP_001943405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Acyrthosiphon pisum]
Length = 119
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ +G KK+ E DTK++NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYDGEKKIVQELDTKVVNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTS-QSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL++K +RI T+ + +P A ++ DL EL + F+
Sbjct: 61 YKLPHPLEHKFELRIQTSCPEYTPQDALTNSLTDLLAELSLFEERFK 107
>gi|268533032|ref|XP_002631644.1| C. briggsae CBR-RPB-11 protein [Caenorhabditis briggsae]
gi|74845978|sp|Q60SM4.1|RPB11_CAEBR RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
Length = 122
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK+ E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK PHPL++KI++R+ TT+ ++P A AI DL EL L+
Sbjct: 60 YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLE 101
>gi|328859791|gb|EGG08899.1| hypothetical protein MELLADRAFT_34668 [Melampsora larici-populina
98AG31]
Length = 159
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 75/106 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE + + EG K++ + DTKI NA + TI +E+HT+GN+LR QL + E V+FAG
Sbjct: 1 MNAPNRYELYTLGEGESKLTIDEDTKIPNACTVTINKEDHTLGNMLRAQLLQMEYVIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ + I+++ T +P+QA +A+ L LD ++++ +
Sbjct: 61 YKVPHPLEPRFIIKVQTDGTHTPIQAIQEAVKSLILSLDKMRNSLQ 106
>gi|358332944|dbj|GAA51526.1| DNA-directed RNA polymerase II subunit RPB11 [Clonorchis sinensis]
Length = 177
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 13/123 (10%)
Query: 1 MNAPDRYERFVVPEGTKK-------------VSYERDTKIINAASFTIEREEHTIGNILR 47
MNAP +E F++ +G KK +S+E+DT++ NAA FT+ RE+HT+GN+L
Sbjct: 1 MNAPASFEPFLLADGEKKYAPLTQWIKLLDRISFEKDTQVPNAAIFTLNREDHTVGNMLT 60
Query: 48 MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107
QL +D VLFAGYK PHPL++KI++R+ T ++P+ + A+ DL E+ ++ F
Sbjct: 61 CQLLKDPRVLFAGYKAPHPLEHKIVIRVQTLPPTTPLDVFISALKDLVSEVSNIEEQFRK 120
Query: 108 LDA 110
+ A
Sbjct: 121 VSA 123
>gi|45185683|ref|NP_983399.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|44981438|gb|AAS51223.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|374106605|gb|AEY95514.1| FACL005Cp [Ashbya gossypii FDAG1]
Length = 122
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 68/106 (64%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++PEG K+ E DTK NA T E+E+HT+GNI+R +L DE VLFA
Sbjct: 1 MNAPDRFELFLLPEGESKLKIEPDTKAANAVIITFEKEDHTLGNIIRAELLEDERVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P +A A N + +L TLKS FE
Sbjct: 61 YKVEHPLFARFRMRIQTAEGYDPKEALKNACNSIINKLATLKSNFE 106
>gi|344233314|gb|EGV65187.1| RBP11-like subunits of RNA polymerase [Candida tenuis ATCC 10573]
gi|344233315|gb|EGV65188.1| hypothetical protein CANTEDRAFT_113704 [Candida tenuis ATCC 10573]
Length = 121
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IE+E+HT+ N+LR QL +DE VLFA
Sbjct: 1 MNAPDRFELFILPDGVDKIKITPDTKVPNAAIIKIEKEDHTLANLLRAQLLKDERVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T +P +A A +L ELD +K+ F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDNYTPKEALRNACTNLIGELDLIKNKFK 106
>gi|452980663|gb|EME80424.1| hypothetical protein MYCFIDRAFT_78162 [Pseudocercospora fijiensis
CIRAD86]
Length = 124
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE F++ EG KKV + +T++ NAA FT +E+HT+GN+LR +L + E+VLFAG
Sbjct: 1 MNAPDRYESFILDEGQKKVEVDPETRVPNAAMFTFNKEDHTLGNLLRAKLAKSEHVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL +R+ T + SP +A A ++ KEL L F
Sbjct: 61 YQVPHPLFATFKLRVQTDGEVSPKEAVVNACREVVKELGQLDQEF 105
>gi|453082047|gb|EMF10095.1| RBP11-like subunits of RNA polymerase [Mycosphaerella populorum
SO2202]
Length = 121
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KKV +E +T++ NA+ FT +E+HT+GN+LR +L + ++VLFAG
Sbjct: 1 MNAPDRFESFLLAEGEKKVEHEPETRVPNASMFTFNKEDHTLGNLLRAKLAKADHVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL +R+ T + +P +A A DL KEL L F
Sbjct: 61 YQVPHPLFATFKLRVQTDGEITPKEAVVNACQDLVKELGQLDQEF 105
>gi|17536663|ref|NP_496942.1| Protein RPB-11 [Caenorhabditis elegans]
gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|3924901|emb|CAB03455.1| Protein RPB-11 [Caenorhabditis elegans]
Length = 122
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK PHPL++KI++RI TT+ ++P A AI DL EL L+
Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLE 101
>gi|745556|prf||2016335A RNA polymerase II:SUBUNIT=14kD
Length = 113
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP ++ F++ +G KK + +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFQSFLLFQGQKK-TINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIND 93
YK+PHPL++KII+R+ TT SP +A+ AI D
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITD 92
>gi|149689200|gb|ABR27969.1| DNA-directed RNA polymerase II 13.3 kda polypeptide [Triatoma
infestans]
Length = 117
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 70/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP ++ F++ +G KV E DTK+ NAA FTI +E+HT+GN++R QL +D VLFAG
Sbjct: 1 MNAPPTFDSFLLYDGEHKVIREMDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL K ++RI TT+ +P AI DL EL + F+
Sbjct: 61 YKVPHPLDPKFVIRIQTTNDETPQSVLKNAITDLISELSLFEERFK 106
>gi|119176958|ref|XP_001240328.1| DNA-directed RNA polymerase II [Coccidioides immitis RS]
gi|392867711|gb|EAS29036.2| DNA-directed RNA polymerase II [Coccidioides immitis RS]
Length = 128
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+ G KKV E DT++ + A FT +E+HT+GN++R QL + ++V FAG
Sbjct: 1 MNAPDRFESFVLGPGEKKVEMETDTRVPSTAIFTFNKEDHTLGNLIRAQLLKSQHVQFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +K I+R+ T +P A A ++L K+L TL F
Sbjct: 61 YKVPHPLVHKFILRVQTDGAITPKDAVLTACHELVKDLGTLSREF 105
>gi|303316247|ref|XP_003068128.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240107804|gb|EER25983.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320032518|gb|EFW14471.1| DNA-directed RNA polymerase II [Coccidioides posadasii str.
Silveira]
Length = 128
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 71/105 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+ G KKV E DT++ + A FT +E+HT+GN++R QL + ++V FAG
Sbjct: 1 MNAPDRFESFVLGPGEKKVEMETDTRVPSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +K I+R+ T +P A A ++L K+L TL F
Sbjct: 61 YKVPHPLVHKFILRVQTDGAITPKDAVLTACHELVKDLGTLSREF 105
>gi|323452227|gb|EGB08102.1| hypothetical protein AURANDRAFT_26699 [Aureococcus anophagefferens]
Length = 118
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R++++ + + K+++Y+ D KI NA +FTI +E+HT+GN+LRMQ+ R + FAG
Sbjct: 1 MNAPERHKKYQLDDDEKRMTYKNDEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQS-SPMQAYNQAINDLDKELDTLKSAF 105
Y+LPHPL + V+I TTS + +P+ A+ +AI DL E+D L F
Sbjct: 61 YQLPHPLMNECRVKIQTTSANLTPIGAFQRAIEDLQSEMDILDRNF 106
>gi|326435884|gb|EGD81454.1| DNA-directed RNA polymerase II subunit J [Salpingoeca sp. ATCC
50818]
Length = 202
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+ ++R ++ G +KV+Y DTK+ NA +F I RE+HT+GN+L QL RD VLF+G
Sbjct: 1 MNAPETFDRILLAPGEQKVTYTPDTKVPNAGTFRINREDHTLGNMLASQLRRDPRVLFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHPL++ +++RI TT SP +A A+ D ++ + FE
Sbjct: 61 YRCPHPLEHHLLLRIQTTPDYSPKEALKTALADCRADITRMTHEFE 106
>gi|126137858|ref|XP_001385452.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
gi|126092730|gb|ABN67423.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
Length = 122
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 69/106 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ D+K+ NAA IERE+HT+ N+LR QL +D VLFA
Sbjct: 1 MNAPDRFELFILPDGVDKIKITPDSKVPNAAIIKIEREDHTLANLLRAQLLKDPRVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP +A A + L ELD +K+ F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPREALKNACSGLISELDVIKNRFK 106
>gi|406606706|emb|CCH41930.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 121
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ E D K+ NAA T E+E+HT+GN+LR QL +DE V+FA
Sbjct: 1 MNAPDRFELFILPDGASKIKVEPDLKVENAAIVTFEKEDHTLGNLLRAQLLKDERVVFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T +P +A A ++ +++ LKS F+
Sbjct: 61 YKVEHPLFANFVMRIQTEDNYTPREALKNACYNVIAQIEALKSKFK 106
>gi|149243898|ref|XP_001526543.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448937|gb|EDK43193.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 121
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 67/105 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DTK+ NAA IERE+HT+ N+LR QL +D V+FA
Sbjct: 1 MNAPDRFELFILPDGVDKIKITPDTKVPNAAIIKIEREDHTLANLLRAQLLKDPRVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL ++RI T +P +A A N L EL +KS F
Sbjct: 61 YKVEHPLFANFVLRIQTEEDYTPKEALKNACNMLINELGAIKSKF 105
>gi|398394339|ref|XP_003850628.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
gi|339470507|gb|EGP85604.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
Length = 121
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ + KKV + +T++ NAA FT +E+HT+GN+LR +L + E+VLFAG
Sbjct: 1 MNAPDRFESFLLADNEKKVEVDPETRVPNAAMFTFNKEDHTLGNLLRAKLAKAEHVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL + +R+ T + SP +A QA +L EL +L F
Sbjct: 61 YQVPHPLFAQFKLRVQTDGEVSPKEAVVQACKELVAELQSLDQEF 105
>gi|67528118|ref|XP_661873.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|40739747|gb|EAA58937.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|259481116|tpe|CBF74353.1| TPA: DNA-directed RNA polymerase II subunit RPB11a, putative
(AFU_orthologue; AFUA_7G03860) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE FV+ G KV E DT+I ++A FT +E+HT+GN++R +L + +VLFA
Sbjct: 1 MNAPDRYESFVLASGENKVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL K I+R+ T SP QA A N+L ++L L F
Sbjct: 61 YKVPHPLVPKFILRVQTDGDISPKQAVITACNELVRDLGILSREF 105
>gi|323452880|gb|EGB08753.1| hypothetical protein AURANDRAFT_25751 [Aureococcus anophagefferens]
Length = 136
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR + +V+ +G KK+ Y D KI NA +FTI +E HT+G++L+MQ+ R+ V + G
Sbjct: 1 MNAPDRIDSYVLADGEKKMVYANDEKIPNAGTFTIAKETHTVGHLLQMQVLRNNQVRYCG 60
Query: 61 YKLPHPLQYKIIVRIH-TTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPLQ ++V++ TTS+++P+ A+ +L E + L +F
Sbjct: 61 YKMPHPLQNSMLVKVQTTTSKATPVAVVGAALAELQSECEVLDRSF 106
>gi|390350815|ref|XP_786311.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Strongylocentrotus purpuratus]
Length = 108
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 65/88 (73%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
K++ E+DTK+ NAA FT+ +E+HT+GNILR QL +D VLFAGYK+PHPL++K ++R+ T
Sbjct: 9 KITIEKDTKVPNAAIFTVNKEDHTLGNILRAQLLKDPQVLFAGYKVPHPLEHKFVLRVQT 68
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
T SP +A+ AI DL E+ L+ F
Sbjct: 69 TPDYSPQEAFTNAITDLISEISLLEERF 96
>gi|313229045|emb|CBY18197.1| unnamed protein product [Oikopleura dioica]
Length = 119
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 66/93 (70%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP R+E F++ +G KK+ +++ + +A FT+ +E+HT+GNIL+ QL RD VLFAG
Sbjct: 1 MNAPPRFESFMLYDGEKKIEVKKEVNVPDACLFTLNKEDHTLGNILKTQLLRDPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIND 93
YK PHPL+ K+I+R+ TT +P A+ AI D
Sbjct: 61 YKNPHPLENKVIIRVQTTKDYTPQDAFTNAITD 93
>gi|406861045|gb|EKD14101.1| DNA-directed RNA polymerase II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 122
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KKVS DT+ +++ FT +E+HT+ NILR L +D +VLFAG
Sbjct: 1 MNAPDRFELFILGEGEKKVSEAADTRTSDSSVFTFNKEDHTLANILRAHLVKDPHVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL K +R+ T SP +A + +L E++TL F
Sbjct: 61 YKIPHPLFAKFELRVQTDGTVSPKEALVKCCKELVAEMETLSREF 105
>gi|426357372|ref|XP_004046017.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 171
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 64/88 (72%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++S +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ T
Sbjct: 30 EISINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 89
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
T SP +A+ AI DL EL L+ F
Sbjct: 90 TPDYSPQEAFTNAITDLISELSLLEERF 117
>gi|240271228|gb|ACS53479.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271236|gb|ACS53483.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
Length = 84
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 64/84 (76%)
Query: 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV 73
EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++
Sbjct: 1 EGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVL 60
Query: 74 RIHTTSQSSPMQAYNQAINDLDKE 97
RI TTS+ SP +A+ AI DL E
Sbjct: 61 RIQTTSEYSPHEAFMNAITDLLSE 84
>gi|448520186|ref|XP_003868244.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis Co 90-125]
gi|380352583|emb|CCG22810.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis]
Length = 122
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G +K+ D+K+ NAA IERE+HT+ N+LR QL +D+ V+FA
Sbjct: 1 MNAPDRFELFILPDGVEKIKITPDSKVPNAAIVKIEREDHTLANLLRAQLLKDDRVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP +A A N L EL + + F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDNYSPKEALKNACNALIAELRDISNKFQ 106
>gi|240271196|gb|ACS53463.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271198|gb|ACS53464.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271200|gb|ACS53465.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271202|gb|ACS53466.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271206|gb|ACS53468.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271208|gb|ACS53469.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271210|gb|ACS53470.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271212|gb|ACS53471.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271214|gb|ACS53472.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271216|gb|ACS53473.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271218|gb|ACS53474.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271220|gb|ACS53475.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271222|gb|ACS53476.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271224|gb|ACS53477.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271226|gb|ACS53478.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271230|gb|ACS53480.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271232|gb|ACS53481.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271234|gb|ACS53482.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271238|gb|ACS53484.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271240|gb|ACS53485.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271242|gb|ACS53486.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271246|gb|ACS53488.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271248|gb|ACS53489.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271250|gb|ACS53490.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271252|gb|ACS53491.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271254|gb|ACS53492.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271256|gb|ACS53493.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271262|gb|ACS53496.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271264|gb|ACS53497.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271268|gb|ACS53499.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271274|gb|ACS53502.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271276|gb|ACS53503.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271278|gb|ACS53504.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271290|gb|ACS53510.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271292|gb|ACS53511.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271294|gb|ACS53512.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271298|gb|ACS53514.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271300|gb|ACS53515.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271302|gb|ACS53516.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271304|gb|ACS53517.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271306|gb|ACS53518.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271310|gb|ACS53520.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271312|gb|ACS53521.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271314|gb|ACS53522.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271316|gb|ACS53523.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
merus]
gi|240271318|gb|ACS53524.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
quadriannulatus]
gi|240271320|gb|ACS53525.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
vagus]
gi|240271322|gb|ACS53526.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271324|gb|ACS53527.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271326|gb|ACS53528.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271328|gb|ACS53529.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271330|gb|ACS53530.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271332|gb|ACS53531.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271334|gb|ACS53532.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271336|gb|ACS53533.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
Length = 85
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 64/84 (76%)
Query: 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV 73
EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++
Sbjct: 2 EGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVL 61
Query: 74 RIHTTSQSSPMQAYNQAINDLDKE 97
RI TTS+ SP +A+ AI DL E
Sbjct: 62 RIQTTSEYSPHEAFMNAITDLLSE 85
>gi|444715581|gb|ELW56446.1| DNA-directed RNA polymerase II subunit RPB11-a [Tupaia chinensis]
Length = 131
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ T
Sbjct: 32 RITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 91
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
T SP +A+ AI DL EL L+ F
Sbjct: 92 TPDYSPQEAFTNAITDLISELSLLEERF 119
>gi|50305029|ref|XP_452472.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641605|emb|CAH01323.1| KLLA0C06160p [Kluyveromyces lactis]
Length = 121
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++PEG K+ E+DTK +A T E+E+HT+GN++R +L DE VLFA
Sbjct: 1 MNAPDRFELFLLPEGESKLKVEQDTKASSAIIVTFEKEDHTLGNLIRAELLEDEGVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL K +RI T P A A N + +L L+S FE
Sbjct: 61 YKVEHPLFAKFKMRIQTVEGYDPKDALKNACNSIINKLAQLQSNFE 106
>gi|281337679|gb|EFB13263.1| hypothetical protein PANDA_015431 [Ailuropoda melanoleuca]
Length = 97
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ T
Sbjct: 8 RITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 67
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
T SP +A+ AI DL EL L+ F
Sbjct: 68 TPDYSPQEAFTNAITDLISELSLLEERF 95
>gi|261200199|ref|XP_002626500.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593572|gb|EEQ76153.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607549|gb|EEQ84536.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327352540|gb|EGE81397.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 128
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 71/105 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E FV+ G KKV E DT+I + A FT +E+HT+GN++R +L +VLF+G
Sbjct: 1 MNAPERFESFVLLPGEKKVEVEVDTRIPSTAIFTFHKEDHTLGNMIRSRLINSSHVLFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL K I+R+ T Q +P +A A ++L K+L +L F
Sbjct: 61 YKVPHPLVPKFILRVQTDGQITPKEAVITACHELVKDLGSLSREF 105
>gi|449265930|gb|EMC77057.1| DNA-directed RNA polymerase II subunit RPB11-a, partial [Columba
livia]
Length = 90
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ T
Sbjct: 1 RITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 60
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
T SP +A+ AI DL EL L+ F
Sbjct: 61 TPDYSPQEAFTNAITDLISELSLLEERF 88
>gi|224007319|ref|XP_002292619.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 124
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R F++ + +K+ Y+ DTK+ NA +FT +E+HT+ N+LRMQL RD V FAG
Sbjct: 1 MNAPERSSAFLLDDDEEKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAG 60
Query: 61 YKLPHPLQYKIIVRIH-TTSQSSPMQAYNQAINDLDKELDTL 101
Y PHPL +KI ++I TTSQ +P + + AI DL E D L
Sbjct: 61 YMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHL 102
>gi|342320371|gb|EGU12312.1| DNA-directed RNA polymerase II [Rhodotorula glutinis ATCC 204091]
Length = 130
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE FV+ +G KV DTKI NAA+ TI +E+HT+ N+LR QL V FAG
Sbjct: 1 MNAPSRYEMFVLNDGEAKVEVVEDTKIPNAATLTINKEDHTLANMLRSQLLLFPYVQFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ ++++++ T +P+ A +AIN L L ++S F+
Sbjct: 61 YKVPHPLEPRVVLKVQTDGSRTPLVAVQEAINTLLILLGKVRSQFQ 106
>gi|50551669|ref|XP_503309.1| YALI0D26301p [Yarrowia lipolytica]
gi|49649177|emb|CAG81515.1| YALI0D26301p [Yarrowia lipolytica CLIB122]
Length = 117
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K+ DT+I N A+ E+E+HT+GN+LR QL D V+FA
Sbjct: 1 MNAPDRFELFLLPDGVPKLEVTPDTRIPNCANIKFEKEDHTLGNLLRSQLLHDSRVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP +A A N L ++L L+ F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPQEALTNACNALIRQLSDLQEKFQ 106
>gi|297288087|ref|XP_001114645.2| PREDICTED: ras GTPase-activating protein 4 [Macaca mulatta]
Length = 642
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/99 (47%), Positives = 66/99 (66%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
Y + E ++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHP
Sbjct: 532 YRHLLGVEAMLWITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHP 591
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
L++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 592 LEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 630
>gi|350581483|ref|XP_003481048.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like,
partial [Sus scrofa]
Length = 99
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT
Sbjct: 1 ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTT 60
Query: 79 SQSSPMQAYNQAINDLDKELDTLKSAF 105
SP +A+ AI DL EL L+ F
Sbjct: 61 PDYSPQEAFTNAITDLISELSLLEERF 87
>gi|320168334|gb|EFW45233.1| RNA polymerase II subunit [Capsaspora owczarzaki ATCC 30864]
Length = 121
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD +E V+ +K+ RD++ +AA T+ +E+HT+GN+LR+QL RD VLF+G
Sbjct: 1 MNAPDPFETMVLGPDERKIVCVRDSRNPSAAVITVNKEDHTLGNLLRVQLLRDPKVLFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y +PHPLQ K ++R+ T SP++A + A NDL E+ L+ F
Sbjct: 61 YHVPHPLQSKFVLRVLTVEGYSPIEAVSGAFNDLISEMSLLEERF 105
>gi|225682162|gb|EEH20446.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289350|gb|EEH44862.1| DNA-directed RNA polymerase II [Paracoccidioides brasiliensis Pb18]
Length = 128
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L +VLF+G
Sbjct: 1 MNAPERFESFVLLPGEKKVEVEVDTRVPSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL K I+R+ T Q +P +A A ++L K+L L F
Sbjct: 61 YKVPHPLIPKFILRVQTDGQITPKEAVITACHELVKDLGALSREF 105
>gi|354544239|emb|CCE40962.1| hypothetical protein CPAR2_110000 [Candida parapsilosis]
Length = 122
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 66/106 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G +K+ D+K+ NAA IERE+HT+ N+LR QL +D+ V+FA
Sbjct: 1 MNAPDRFELFILPDGLEKIKITPDSKVPNAAIIKIEREDHTLANLLRAQLLKDDRVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++RI T SP A A L EL + F+
Sbjct: 61 YKVEHPLFANFVLRIQTEDDYSPKDALKNACQALIAELQAINDKFQ 106
>gi|367005132|ref|XP_003687298.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
gi|357525602|emb|CCE64864.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
Length = 120
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ E+DTK NA T E+E+HT+GN++R +L DE VLFA
Sbjct: 1 MNAPDRFELFLLDEGQSKLQIEQDTKAANAVVITFEKEDHTLGNLIRNELLNDEKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A A N++ +L LK+ F+
Sbjct: 61 YKVEHPLFARFKLRIQTEENYDPKDALKMACNNIINKLGILKTNFD 106
>gi|213410391|ref|XP_002175965.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
gi|212004012|gb|EEB09672.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE + G KV+YE DTK N A+ TIE+E+HT+ N+LR QL DE V+FAG
Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDTKSPNTANITIEKEDHTLANMLRTQLLYDERVVFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL + I+R+ TT + SP QA A L L+ LK F
Sbjct: 60 YRVPHPLNHNFILRVQTTEECSPKQAIIDASKSLITVLEQLKVNF 104
>gi|403416590|emb|CCM03290.1| predicted protein [Fibroporia radiculosa]
Length = 142
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE FV+ EG + V DTKI NAA+ + +++HT+GN++R QL VLFAG
Sbjct: 1 MNAPARYELFVLDEGERPVEVIEDTKIPNAATIKVMKQDHTLGNLIRAQLLSMPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPLQ +++I T ++P + QA N L + + +L++ F+
Sbjct: 61 YKVPHPLQPHFLIKIQTDGTATPTEILEQACNKLIQMMVSLEAKFK 106
>gi|413937798|gb|AFW72349.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 91
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 49/49 (100%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQ 49
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+GNILRM+
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMR 49
>gi|291232049|ref|XP_002735997.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Saccoglossus kowalevskii]
Length = 110
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 23 RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
+DTK+ NAA FT+ +E+HT+GN+LR QL +D VLFAGYK+PHPL++K ++R+ TT S
Sbjct: 16 KDTKVPNAAMFTVNKEDHTLGNLLRSQLLKDPQVLFAGYKVPHPLEFKFVLRVQTTPDYS 75
Query: 83 PMQAYNQAINDLDKELDTLKSAFE 106
P +A+ AI DL E+ L+ F+
Sbjct: 76 PQEAFTNAITDLISEVSLLEERFK 99
>gi|392589040|gb|EIW78371.1| RBP11-like subunits of RNA polymerase, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 133
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E FV+ +G K V DTKI NAA+F I +++HT+GN++R Q+ VLFAG
Sbjct: 1 MNAPNRFELFVLEDGEKPVEVTEDTKIPNAATFKIVKQDHTLGNMIRAQVLSMPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPLQ +++I T +P A QA L + T++ F+
Sbjct: 61 YKVPHPLQPYFLLKIQTDGSLTPQAALEQACTKLISTISTIEKKFK 106
>gi|449544553|gb|EMD35526.1| hypothetical protein CERSUDRAFT_116269 [Ceriporiopsis subvermispora
B]
Length = 141
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 66/106 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE FV+ EG K V DTKI NAA+ + +++HT+GN+LR QL + VLFAG
Sbjct: 1 MNAPPRYELFVLEEGEKPVEVIEDTKIPNAATIKVVKQDHTLGNMLRAQLLQMPEVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPLQ +++I T +P QA L L +L+ F+
Sbjct: 61 YKVPHPLQPYFLIKIQTDGSVTPAAVLEQACTKLIGTLSSLEQKFK 106
>gi|430814459|emb|CCJ28306.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1377
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+R+E ++PEG KKV+++ D K+ NAA+ T+ E+HT+GN+LR QL +DE VLFAGY
Sbjct: 1258 NIPERWELLLLPEGKKKVTFDIDPKVPNAANITVLNEDHTLGNMLRAQLLQDERVLFAGY 1317
Query: 62 KLPHP-LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
++ HP L++K ++R+ T P A + A DL +L L++ FE
Sbjct: 1318 RVSHPILEHKFVLRVQTEEGYEPRDAVSNASRDLLYQLTQLRNNFE 1363
>gi|397616203|gb|EJK63876.1| hypothetical protein THAOC_15445 [Thalassiosira oceanica]
Length = 123
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+R + F++ + +K+ Y+ DTK+ NA +FT+ +E+HT+GN+LRMQL RD V FAGY
Sbjct: 3 NRPERSDAFLLGDDEEKIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGY 62
Query: 62 KLPHPLQYKIIVRIHT-TSQSSPMQAYNQAINDLDKELDTL 101
PHPL +I +++ T TSQ +P ++ + AI DL E D L
Sbjct: 63 MHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103
>gi|349804759|gb|AEQ17852.1| putative polymerase ii (dna directed) polypeptide [Hymenochirus
curtipes]
Length = 99
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
++ +DTK+ NA FTI +E+HTIGNI++ QL +D VLFAGYK+PHPL++KII+R+ TT
Sbjct: 1 ITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTT 60
Query: 79 SQSSPMQAYNQAINDLDKEL 98
SP +A+ AI DL EL
Sbjct: 61 PDYSPQEAFTNAITDLLSEL 80
>gi|413937796|gb|AFW72347.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 48
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 48/48 (100%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRM 48
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+GNILRM
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRM 48
>gi|322785814|gb|EFZ12433.1| hypothetical protein SINV_02880 [Solenopsis invicta]
Length = 91
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ E+DTK+ NAA FTI +E+HT+GN++R QL +D VLFAGYK+PHPL++K ++RI T
Sbjct: 3 RIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQT 62
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
TS +P +A+ AI DL EL + F+
Sbjct: 63 TSDYTPHEAFMHAITDLIAELSLFEERFK 91
>gi|365758451|gb|EHN00292.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842527|gb|EJT44698.1| RPB11-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 122
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ E DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>gi|389748032|gb|EIM89210.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 166
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE FV+ EG K V DTKI NAA+ + +++HT+GN++R QL + VLFAG
Sbjct: 1 MNAPSRYELFVLDEGEKPVEIVEDTKIPNAATIKVLKQDHTLGNMIRAQLLQSPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL ++++ T +P A QA L L +L++ F+
Sbjct: 61 YKVPHPLHPYFLIKLQTDGTITPAYALEQACTKLIGTLASLETQFK 106
>gi|169775525|ref|XP_001822230.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus oryzae
RIB40]
gi|238495811|ref|XP_002379141.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|83770093|dbj|BAE60228.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694021|gb|EED50365.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|391874196|gb|EIT83118.1| RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 129
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE FV+ G KV E DT+I ++A FT +E+HT+GN++R +L + +VLFA
Sbjct: 1 MNAPDRYESFVLANGENKVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL K +R+ T + +P +A A ++L ++L L F
Sbjct: 61 YKVPHPLVPKFELRVQTDGEITPKEAVIAACHELVRDLGILSREF 105
>gi|156844441|ref|XP_001645283.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156115943|gb|EDO17425.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 120
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 66/106 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD++E F++ EG K++ E DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDKFELFLLGEGESKLNIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A A N++ +L LK+ FE
Sbjct: 61 YKVEHPLFARFKLRIQTVENYDPKDALKNACNNIINKLGILKTNFE 106
>gi|345567881|gb|EGX50783.1| hypothetical protein AOL_s00054g869 [Arthrobotrys oligospora ATCC
24927]
Length = 192
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 71/104 (68%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
+AP+R+E F++ +G +KV+ +T++ N +FT +E+HT+GN+LR QL +D VLFAGY
Sbjct: 72 DAPERFELFIMGDGEEKVTAVDETRVPNCVTFTFNKEDHTLGNLLRSQLLKDPKVLFAGY 131
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL +R+ TT +++P A +A DL K+L ++ F
Sbjct: 132 KVPHPLFPSFELRVQTTDETNPRAAVIKAAQDLIKDLTIFRNNF 175
>gi|393213875|gb|EJC99370.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 171
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA R+E +V+ EG + V DTKI NAA+ I +++HT+GN+LR QL +++VLFAG
Sbjct: 1 MNAIQRHELYVLEEGEEWVMVTEDTKIPNAATIKIRKQDHTLGNMLRHQLLANQSVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPLQ +++I T +P QA +A DL L TL++ F
Sbjct: 61 YRVPHPLQPYFLLKIQTDGTITPSQALEKASTDLIGTLTTLETKF 105
>gi|6324569|ref|NP_014638.1| Rpb11p [Saccharomyces cerevisiae S288c]
gi|730605|sp|P38902.1|RPB11_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=B13.6; AltName: Full=DNA-directed RNA polymerase II
13.6 kDa polypeptide
gi|14278332|pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278343|pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278373|pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
gi|20150721|pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749626|pdb|1NIK|K Chain K, Wild Type Rna Polymerase Ii
gi|30749747|pdb|1NT9|K Chain K, Complete 12-Subunit Rna Polymerase Ii
gi|34810563|pdb|1PQV|K Chain K, Rna Polymerase Ii-Tfiis Complex
gi|46015423|pdb|1R5U|K Chain K, Rna Polymerase Ii Tfiib Complex
gi|46015788|pdb|1SFO|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965919|pdb|1R9S|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965931|pdb|1R9T|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966115|pdb|1TWA|K Chain K, Rna Polymerase Ii Complexed With Atp
gi|56966129|pdb|1TWC|K Chain K, Rna Polymerase Ii Complexed With Gtp
gi|56966139|pdb|1TWF|K Chain K, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966149|pdb|1TWG|K Chain K, Rna Polymerase Ii Complexed With Ctp
gi|56966159|pdb|1TWH|K Chain K, Rna Polymerase Ii Complexed With 2'datp
gi|58177174|pdb|1WCM|K Chain K, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679454|pdb|1Y1W|K Chain K, Complete Rna Polymerase Ii Elongation Complex
gi|61679471|pdb|1Y77|K Chain K, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679512|pdb|1Y1V|K Chain K, Refined Rna Polymerase Ii-tfiis Complex
gi|61679525|pdb|1Y1Y|K Chain K, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754253|pdb|2B63|K Chain K, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590864|pdb|2B8K|K Chain K, 12-Subunit Rna Polymerase Ii
gi|122920069|pdb|2E2H|K Chain K, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920084|pdb|2E2I|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920099|pdb|2E2J|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921038|pdb|2NVQ|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921074|pdb|2NVT|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921090|pdb|2NVX|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921105|pdb|2NVY|K Chain K, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921117|pdb|2NVZ|K Chain K, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104684|pdb|2JA5|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104699|pdb|2JA6|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104720|pdb|2JA7|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104732|pdb|2JA7|W Chain W, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104744|pdb|2JA8|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387192|pdb|2YU9|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877783|pdb|2R7Z|K Chain K, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172237|pdb|2R92|K Chain K, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172250|pdb|2R93|K Chain K, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613472|pdb|2VUM|K Chain K, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368742|pdb|3CQZ|K Chain K, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983600|pdb|3FKI|K Chain K, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781924|pdb|3GTG|K Chain K, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781937|pdb|3GTJ|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781950|pdb|3GTK|K Chain K, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781963|pdb|3GTL|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781976|pdb|3GTM|K Chain K, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781990|pdb|3GTO|K Chain K, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782003|pdb|3GTP|K Chain K, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782016|pdb|3GTQ|K Chain K, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104521|pdb|3H3V|L Chain L, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839451|pdb|3HOU|K Chain K, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839466|pdb|3HOU|W Chain W, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839481|pdb|3HOV|K Chain K, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839496|pdb|3HOW|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839511|pdb|3HOX|K Chain K, Complete Rna Polymerase Ii Elongation Complex V
gi|254839526|pdb|3HOY|K Chain K, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839541|pdb|3HOZ|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471956|pdb|3I4M|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471971|pdb|3I4N|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618775|pdb|3K1F|K Chain K, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914560|pdb|3K7A|K Chain K, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982483|pdb|3M3Y|K Chain K, Rna Polymerase Ii Elongation Complex C
gi|295982496|pdb|3M4O|K Chain K, Rna Polymerase Ii Elongation Complex B
gi|325053973|pdb|3PO2|K Chain K, Arrested Rna Polymerase Ii Elongation Complex
gi|325053988|pdb|3PO3|K Chain K, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634548|pdb|3QT1|K Chain K, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197464|pdb|3RZD|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197476|pdb|3RZO|K Chain K, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197488|pdb|3S14|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197500|pdb|3S15|K Chain K, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197512|pdb|3S16|K Chain K, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197524|pdb|3S17|K Chain K, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197536|pdb|3S1M|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197548|pdb|3S1N|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197560|pdb|3S1Q|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197572|pdb|3S1R|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197584|pdb|3S2D|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781205|pdb|3S2H|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251643|pdb|3J0K|K Chain K, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380846|pdb|4A3C|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546300|pdb|4A3B|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546318|pdb|4A3D|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546335|pdb|4A3E|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546352|pdb|4A3F|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546369|pdb|4A3J|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546386|pdb|4A3K|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546402|pdb|4A3L|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546419|pdb|4A3M|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977889|pdb|4A3G|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977904|pdb|4A3I|K Chain K, Rna Polymerase Ii Binary Complex With Dna
gi|380764989|pdb|4A93|K Chain K, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145456|pdb|4BBR|K Chain K, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145469|pdb|4BBS|K Chain K, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|386198|gb|AAB27135.1| RNA polymerase II subunit RPB11 [Saccharomyces cerevisiae]
gi|1419769|emb|CAA99004.1| RPB11 [Saccharomyces cerevisiae]
gi|45269886|gb|AAS56324.1| YOL005C [Saccharomyces cerevisiae]
gi|151945625|gb|EDN63866.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190407337|gb|EDV10604.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273996|gb|EEU08912.1| Rpb11p [Saccharomyces cerevisiae JAY291]
gi|285814885|tpg|DAA10778.1| TPA: Rpb11p [Saccharomyces cerevisiae S288c]
gi|323303058|gb|EGA56861.1| Rpb11p [Saccharomyces cerevisiae FostersB]
gi|323307116|gb|EGA60399.1| Rpb11p [Saccharomyces cerevisiae FostersO]
gi|323331712|gb|EGA73126.1| Rpb11p [Saccharomyces cerevisiae AWRI796]
gi|323335698|gb|EGA76981.1| Rpb11p [Saccharomyces cerevisiae Vin13]
gi|323352374|gb|EGA84909.1| Rpb11p [Saccharomyces cerevisiae VL3]
gi|349581161|dbj|GAA26319.1| K7_Rpb11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763240|gb|EHN04770.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296328|gb|EIW07430.1| Rpb11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 120
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>gi|367017037|ref|XP_003683017.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
gi|359750680|emb|CCE93806.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
Length = 122
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ E DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIEPDTKAPNAVVITFEKEDHTLGNLIRSELLNDTKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A A N + +L LK+ FE
Sbjct: 61 YKVEHPLFARFKMRIQTVEGYDPKDALKNACNGIINKLAVLKTNFE 106
>gi|405967595|gb|EKC32736.1| DNA-directed RNA polymerase II subunit RPB11-a [Crassostrea gigas]
Length = 156
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 38/144 (26%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILR------------- 47
MNAP +E F++ +G KK++ E+DTK+ NAA FT+ +E+HT+GN++
Sbjct: 1 MNAPPTFESFLLFDGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMITARTDTVRTASRAN 60
Query: 48 -------------------------MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
+QL +D VLFAGYK PHPL++K ++R+ TTS S
Sbjct: 61 GPRANENQSEQRQGQTRFRANEQPIIQLRKDPQVLFAGYKNPHPLEHKFVLRVQTTSDYS 120
Query: 83 PMQAYNQAINDLDKELDTLKSAFE 106
P +A AI DL E L+ F+
Sbjct: 121 PQEAITHAITDLISEFSLLEERFK 144
>gi|240271204|gb|ACS53467.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271244|gb|ACS53487.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271260|gb|ACS53495.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271266|gb|ACS53498.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271270|gb|ACS53500.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271272|gb|ACS53501.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271280|gb|ACS53505.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271282|gb|ACS53506.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271284|gb|ACS53507.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271286|gb|ACS53508.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271288|gb|ACS53509.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271296|gb|ACS53513.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271308|gb|ACS53519.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 22 ERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS 81
E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++RI TTS+
Sbjct: 4 ELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEY 63
Query: 82 SPMQAYNQAINDLDKE 97
SP +A+ AI DL E
Sbjct: 64 SPHEAFMNAITDLLSE 79
>gi|259149481|emb|CAY86285.1| Rpb11p [Saccharomyces cerevisiae EC1118]
Length = 120
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +R+ TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRVQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>gi|240271258|gb|ACS53494.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 22 ERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS 81
E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++RI TTS+
Sbjct: 4 ELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEY 63
Query: 82 SPMQAYNQAINDLDKE 97
SP +A+ AI DL E
Sbjct: 64 SPHEAFMXAITDLLSE 79
>gi|296413724|ref|XP_002836559.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630386|emb|CAZ80750.1| unnamed protein product [Tuber melanosporum]
Length = 119
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 68/101 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KVS E+DT+ NAA FT +E+HT+GN+LR L +E+V+F+
Sbjct: 1 MNAPDRFELFLLGDGETKVSMEQDTRQPNAAIFTFNKEDHTLGNLLRATLLHNEHVVFSA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101
YK+PHPL K +R+ T +++P +A A L +L L
Sbjct: 61 YKVPHPLFPKFELRVQTDEETTPKEALLAACQSLIGDLQML 101
>gi|452837613|gb|EME39555.1| hypothetical protein DOTSEDRAFT_75275 [Dothistroma septosporum
NZE10]
Length = 121
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G K+ E +T++ NAA FT +E+HT+GN+LR +L + ++VLFAG
Sbjct: 1 MNAPDRHESFILADGENKIEVESETRVPNAAMFTFNKEDHTLGNLLRAKLVKSDHVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL +R+ T P +A A +L EL F
Sbjct: 61 YQVPHPLFATFKLRVQTDGVIQPKEAVVTACKELVSELQQFDQEF 105
>gi|444320463|ref|XP_004180888.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
gi|387513931|emb|CCH61369.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
Length = 118
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ E DTK N T E+E+HT+GN+++ +L D VLFA
Sbjct: 1 MNAPDRFESFLLGEGESKLQIEPDTKAPNTVVITFEKEDHTLGNLIKSELLHDPKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A +A N + K+L LK+ FE
Sbjct: 61 YKVEHPLFARFKMRIQTVEGYDPKDALRKACNSIIKKLGILKTNFE 106
>gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis
gaditana CCMP526]
Length = 126
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 4/110 (3%)
Query: 1 MNAPDRYERFVVPEGTKKVSYE--RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLF 58
MN P R + + + EG KK ++ + K+ N+ + I +E+HT+GN++RMQL RD+ V F
Sbjct: 1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKF 60
Query: 59 AGYKLPHPLQYKIIVRIHTTSQ--SSPMQAYNQAINDLDKELDTLKSAFE 106
AGY PHPL +KI +R+ T + S+PMQA A++DL++E LK+ F+
Sbjct: 61 AGYIHPHPLIHKIELRVQTLDRALSTPMQALENALSDLNQEFTGLKARFQ 110
>gi|296805491|ref|XP_002843570.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
gi|238844872|gb|EEQ34534.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
Length = 161
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 68/100 (68%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L + ++VLFAGYK+PH
Sbjct: 39 RFESFVLGPGEKKVEIEVDTRVPSTAIFTFNKEDHTLGNMIRARLLQSQHVLFAGYKIPH 98
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +K+++R+ T Q +P A A ++L K+L T F
Sbjct: 99 PLVHKVLLRVQTDGQITPKDAVLTACHELVKDLGTFSREF 138
>gi|255712823|ref|XP_002552694.1| KLTH0C10934p [Lachancea thermotolerans]
gi|238934073|emb|CAR22256.1| KLTH0C10934p [Lachancea thermotolerans CBS 6340]
Length = 122
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 65/106 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++PEG K+ + DTK NA T E+E+HT+ N++R +L D+ VLFA
Sbjct: 1 MNAPDRFELFLLPEGEAKLKIDPDTKAPNAVIVTFEKEDHTLANLIRGELLEDKGVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A A N + +L L+S FE
Sbjct: 61 YKVEHPLFAQFKLRIQTVEGYDPKDALKNACNGIISKLGQLQSNFE 106
>gi|212532477|ref|XP_002146395.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
gi|210071759|gb|EEA25848.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
Length = 128
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 70/105 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR E F++ EG KK+ + DT+ + + FTI +E+H++GN+LR +L ++ +V FA
Sbjct: 1 MNAPDRTESFILGEGEKKIEEKADTRTPSTSIFTINKEDHSVGNLLRGRLLQNRHVTFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +K+ +R+ T + +P A A +D ++L TL F
Sbjct: 61 YKIPHPLVHKLELRVQTDGEITPKDALLAACHDTVRDLGTLSREF 105
>gi|336364500|gb|EGN92857.1| hypothetical protein SERLA73DRAFT_190428 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388546|gb|EGO29690.1| hypothetical protein SERLADRAFT_457791 [Serpula lacrymans var.
lacrymans S7.9]
Length = 142
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E FV+ +G K V DTKI NAA+F I +++HT+GN++R + VLFAG
Sbjct: 1 MNAPNRFELFVLDDGEKPVEVSEDTKIPNAATFKIMKQDHTLGNMVRAYVLAMPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL +++I T +P QA L L TL++ F+
Sbjct: 61 YKVPHPLHPYFLLKIQTDGTVTPQVVLEQACTKLIGSLSTLEAKFK 106
>gi|409048064|gb|EKM57542.1| hypothetical protein PHACADRAFT_251231 [Phanerochaete carnosa
HHB-10118-sp]
Length = 141
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE FV+ EG K V DTKI NA +F I +E+HT+GN+LR +L +D LFAG
Sbjct: 1 MNAPNRYELFVLDEGEKLVEITEDTKIPNATTFKIVKEDHTLGNLLRAELLKDSRCLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL ++++ + + + A L ++L ++++ F+
Sbjct: 61 YKVPHPLHPYFLLKVQSDGSVTASKLVTDACQSLLEKLASVEAKFK 106
>gi|401885887|gb|EJT49968.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406697526|gb|EKD00785.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 160
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 69/106 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+R E +++ +G K+++ D KI NAA+F + ++HT+GN+LR QL D VLFAG
Sbjct: 5 INQPNRVETWLLQDGEKRLTISEDAKIPNAATFVLRAQDHTLGNMLRAQLLLDPTVLFAG 64
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YKLPHPL+ I ++I T +S+P A +A L + ++K F+
Sbjct: 65 YKLPHPLENVISIKIQTDERSNPADALKRACQQLINQTLSIKKQFQ 110
>gi|443895093|dbj|GAC72439.1| RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 154
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R++ F++ K+V DTKI NAA+F +E+HT+GN+LR + + VLF GY
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL+ K+ V+I T +P A Q L ++ +LK A+
Sbjct: 63 KVPHPLEPKVFVKIQTDGSITPTDALKQGCTKLIAQISSLKGAW 106
>gi|323346625|gb|EGA80911.1| Rpb11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 120
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +R TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRXQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>gi|19114245|ref|NP_593333.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe
972h-]
gi|3219850|sp|P87123.1|RPB11_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 14.1 kDa polypeptide
gi|256599725|pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599737|pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2104423|emb|CAB08752.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529239|dbj|BAA22801.1| RNA polymeraseII subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529251|dbj|BAA22806.1| RNA polymerase II subunit Rpb11 [Schizosaccharomyces pombe]
gi|2708530|gb|AAB92517.1| Rpb11 [Schizosaccharomyces pombe]
Length = 123
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE + G KV+YE D+K NAA T+E+E+HT+ N+L QL DE VLFAG
Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL + I+R+ T SP Q A L L+ +K F
Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104
>gi|327304679|ref|XP_003237031.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|326460029|gb|EGD85482.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 160
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L ++++VLF+GY++PH
Sbjct: 38 RFESFVLGPGEKKVEVEVDTRVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPH 97
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +K+++R+ T Q +P +A A +DL K+L F
Sbjct: 98 PLVHKVLLRVQTDGQITPKEAVLAACHDLVKDLGIFSREF 137
>gi|254579979|ref|XP_002495975.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
gi|238938866|emb|CAR27042.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
Length = 122
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLRVDPDTKAPNAIVVTFEKEDHTLGNLIRAELLNDPKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL + +RI T P A A N + +L LK+ FE
Sbjct: 61 YKVEHPLFARFKMRIQTMEGYDPKDALKNACNGIINKLGVLKTNFE 106
>gi|388854627|emb|CCF51784.1| related to DNA-directed RNA polymerase 13.3K chain [Ustilago
hordei]
Length = 149
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R++ F++ K+V DTKI NAA+F +E+HT+GN+LR + + VLF GY
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL+ K+ V+I T +P A Q L ++ +LK A+
Sbjct: 63 KVPHPLEPKVFVKIQTDGSITPTDALKQGCQKLIAQISSLKGAW 106
>gi|366992780|ref|XP_003676155.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
gi|342302021|emb|CCC69793.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
Length = 122
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLQIDPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSRVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI T P A A N + +L LK FE
Sbjct: 61 YKVEHPFFARFKLRIQTVEGYDPKDALKNACNSIISKLGVLKGNFE 106
>gi|326472986|gb|EGD96995.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
gi|326477317|gb|EGE01327.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 160
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 69/100 (69%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L ++++VLF+GY++PH
Sbjct: 38 RFESFVLGPGEKKVEVEIDTRVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPH 97
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +K+++R+ T Q +P +A A +DL K+L F
Sbjct: 98 PLVHKVLLRVQTDGQITPKEAVLAACHDLVKDLGIFSREF 137
>gi|170099820|ref|XP_001881128.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643807|gb|EDR08058.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 150
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE +V+ +G K V DTKI NAA+ I +++HT+GN+LR QL +LFAG
Sbjct: 1 MNAPNRYELYVLEDGEKPVEITEDTKIPNAATIKIVKQDHTLGNMLRAQLLSMPQILFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +++I T +P +QA L + +L++ F
Sbjct: 61 YKVPHPLHPYFLIKIQTDGTITPQAILHQACTKLIGTMSSLETKF 105
>gi|50286733|ref|XP_445796.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525102|emb|CAG58715.1| unnamed protein product [Candida glabrata]
Length = 120
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI T P A A + + +L LKS FE
Sbjct: 61 YKVEHPFFARFKLRIQTVEGYDPKDALRNACSSIINKLGALKSNFE 106
>gi|410074997|ref|XP_003955081.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
gi|372461663|emb|CCF55946.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
Length = 122
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKSPNAVVITFEKEDHTLGNLIRAELLNDTKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +R+ T P +A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRVQTIEGYDPKEALKNACNSIINKLGILKTNFE 106
>gi|315045778|ref|XP_003172264.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
gi|311342650|gb|EFR01853.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
Length = 161
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L ++++VLF+ YK+PH
Sbjct: 39 RFESFVLGPGEKKVEVETDTRVPSTAIFTFNKEDHTLGNLIRSRLFQNQHVLFSAYKIPH 98
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +K+++R+ T Q +P +A A +DL K+L F
Sbjct: 99 PLVHKVLLRVQTDGQITPKEAVLAACHDLVKDLGIFSREF 138
>gi|413937788|gb|AFW72339.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
gi|413937789|gb|AFW72340.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 88
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 46/50 (92%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQL 50
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+G+ Q+
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGSCTETQM 50
>gi|145247839|ref|XP_001396168.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus niger CBS
513.88]
gi|134080912|emb|CAK46429.1| unnamed protein product [Aspergillus niger]
Length = 129
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE FV+ G KV E DT+I ++A FT +E+HT+GN++R +L + +VLFA
Sbjct: 1 MNAPDRYESFVLANGENKVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +R+ T +P A A ++L ++L L F
Sbjct: 61 YKVPHPLVPNFQLRVQTDGDITPKDAVIAACHELVRDLGILSREF 105
>gi|395324938|gb|EJF57369.1| DNA-directed RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 142
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 66/106 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA +RYE +V+ EG K V DTKI NAA+ I +++HT+ N+LR QL +VLFAG
Sbjct: 1 MNAINRYELYVLDEGEKSVEVTEDTKIPNAATIKIVKQDHTLANLLRSQLLGYPSVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK PHPLQ +++I T +P +A DL + TL+S F+
Sbjct: 61 YKAPHPLQPHFLLKIQTDGSITPAAILEKACTDLIGMVATLESKFK 106
>gi|224035429|gb|ACN36790.1| unknown [Zea mays]
Length = 88
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLF 58
MNAPDRYERFVVPEGTKKVSYERDTKI+NAASFT+ERE+HT+G+ Q+ + F
Sbjct: 1 MNAPDRYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGSCTETQMFSLPGISF 58
>gi|71011575|ref|XP_758471.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
gi|46097891|gb|EAK83124.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
Length = 145
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R++ F++ K+V DTKI NAA+F +E+HT+GN+LR + + VLF GY
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL+ K+ V+I T +P A Q L ++ +LK A+
Sbjct: 63 KVPHPLEPKVFVKIQTDGSLTPTDALKQGSQKLIAQISSLKGAW 106
>gi|343427525|emb|CBQ71052.1| related to DNA-directed RNA polymerase 13.3K chain [Sporisorium
reilianum SRZ2]
Length = 147
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R++ F++ K+V DTKI NAA+F +E+HT+GN+LR + + VLF GY
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL+ K+ V+I T +P A Q L ++ +LK A+
Sbjct: 63 KVPHPLEPKVFVKIQTDGSITPTDALKQGSQKLIAQISSLKGAW 106
>gi|347830775|emb|CCD46472.1| similar to DNA-directed RNA polymerase II subunit RPB11
[Botryotinia fuckeliana]
Length = 125
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R+E F++ +G KK + E DT+ N++ FT +E+HT+ N+LR L +D +V+F+GY
Sbjct: 3 NAPERFELFILGDGEKKCTEEADTRTPNSSVFTFNKEDHTLANMLRAHLLKDPHVIFSGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL K +RI T + +P +A +L EL+ F
Sbjct: 63 KIPHPLFSKFELRIQTDGEITPKEALVACCRNLVSELEVFSREF 106
>gi|426195387|gb|EKV45317.1| hypothetical protein AGABI2DRAFT_194279 [Agaricus bisporus var.
bisporus H97]
Length = 148
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE +V+ +G K V D+KI NAA+ I +++HT+GN+LR QL +LFAG
Sbjct: 1 MNAPNRYEIYVLEDGEKPVEVVEDSKIPNAATIKILKQDHTLGNMLRAQLLSMPQILFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL +++I T +P + QA L + +L++ F+
Sbjct: 61 YKVPHPLHPYFLIKIQTDGTITPQELLEQACTKLIGTMSSLETKFK 106
>gi|409077044|gb|EKM77412.1| hypothetical protein AGABI1DRAFT_115317 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 148
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE +V+ +G K V D+KI NAA+ I +++HT+GN+LR QL +LFAG
Sbjct: 1 MNAPNRYEIYVLEDGEKPVEVVEDSKIPNAATIKILKQDHTLGNMLRAQLLSMPQILFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL +++I T +P + QA L + +L++ F+
Sbjct: 61 YKVPHPLHPYFLIKIQTDGTITPQELLEQACTKLIGTMSSLETKFK 106
>gi|358054586|dbj|GAA99512.1| hypothetical protein E5Q_06213 [Mixia osmundae IAM 14324]
Length = 148
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAPDR+ RFV+ EG KV+ E D ++ NAA+ I++E+HTIGN+LR QL V+FAGY
Sbjct: 5 NAPDRHARFVLGEGEMKVAIEEDPRVPNAATVIIKKEDHTIGNMLRGQLLHIPYVVFAGY 64
Query: 62 KLPHPLQYKIIVRIHTTSQSS---PMQAYNQAINDLDKELDTLKSAFE 106
++PHPLQ +++RI + S P A A +L L + FE
Sbjct: 65 RVPHPLQADVVLRIQVDGKDSSQTPTTALQTATRELILILAAARLQFE 112
>gi|258564550|ref|XP_002583020.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237908527|gb|EEP82928.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 125
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 66/100 (66%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R QL + ++V FAGYK+PH
Sbjct: 3 RFESFVLGPGEKKVEMEPDTRLPSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPH 62
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +K ++R+ T +P A A ++L K+L TL F
Sbjct: 63 PLVHKFMLRVQTDGTITPKDAVLTACHELVKDLGTLSREF 102
>gi|156054532|ref|XP_001593192.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980]
gi|154703894|gb|EDO03633.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 124
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAP+R+E F++ +G KK + E DT+ N++ FT +E+HT+ N+LR L +D +V+F+GY
Sbjct: 3 NAPERFELFILGDGEKKCTEEADTRTPNSSIFTFNKEDHTLANMLRAHLLKDPHVIFSGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL K +RI T + +P +A +L EL+ F
Sbjct: 63 KIPHPLFSKFELRIQTDGEITPKEALVACCRNLVSELEVFSREF 106
>gi|365984675|ref|XP_003669170.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
gi|343767938|emb|CCD23927.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
Length = 122
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K++ + DTK NA T ++E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLTIDPDTKAPNAVVITFQKEDHTLGNLIRSELLNDGKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP +RI T P A A N++ +L LK+ FE
Sbjct: 61 YKVEHPFFANFKLRIQTVEGYDPKLALKNACNNIINKLGILKTNFE 106
>gi|169851088|ref|XP_001832235.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
gi|116506713|gb|EAU89608.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
Length = 144
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE FV+ +G K V D+KI NAA+ + +++HT+GN+LR QL VLFAG
Sbjct: 1 MNAPARYELFVLEDGEKPVEVIEDSKIPNAATIKVVKQDHTLGNMLRSQLLAMPEVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL IV++ T +P A A L ++T+ F+
Sbjct: 61 YKVPHPLHPYFIVKVQTDGSITPQAAVEAACTKLIATINTVAQKFK 106
>gi|164661103|ref|XP_001731674.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
gi|159105575|gb|EDP44460.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
Length = 159
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 64/104 (61%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
NAPDR+ F++ G +++ + D +I NAA+F +E+HT+GN+LR + VLF GY
Sbjct: 3 NAPDRFTLFLLQPGEQRIEVQEDMRIPNAATFIFNKEDHTLGNMLRHAVLAQPGVLFCGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL+ +++V+I T +P + QA L ++ LK +
Sbjct: 63 KVPHPLEPRVLVKIQTDGSLTPAEVLQQACTKLIVQMGALKQGW 106
>gi|390599050|gb|EIN08447.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 140
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP RYE +V+ +G K V DTKI NAA+ I +++HT+ N++R +L VLFAG
Sbjct: 1 MNAPPRYEAYVLEDGEKPVEVIEDTKIPNAATIKIVKQDHTLANMIRAELLASPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPLQ ++++ T +P A L +L TL++ F+
Sbjct: 61 YKVPHPLQPYFLIKLQTDGSVTPTAIMESACTKLIGQLVTLEAKFK 106
>gi|393245982|gb|EJD53491.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 148
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E F++ +G K + DTKI NAA+ I +++HT+ N++R QL VLFAG
Sbjct: 1 MNAPNRFELFILQDGEKPLEVIEDTKIPNAATIKIIKQDHTMANMIRAQLLSMPGVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL+ I+++ T Q +P Q A +L + + L F
Sbjct: 61 YKVPHPLEPYFILKVQTDGQRTPAQVVQAACQELIQTISILTERF 105
>gi|154275934|ref|XP_001538812.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150413885|gb|EDN09250.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 168
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT+I + A FT +E+HT+GN++R +L +VLF+GYK+PH
Sbjct: 46 RFESFVLLPGEKKVEVEVDTRIPSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPH 105
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL K I+R+ T Q +P +A A ++L K+L +L F
Sbjct: 106 PLVPKFILRVQTDGQITPKEAVITACHELVKDLGSLSREF 145
>gi|225556050|gb|EEH04340.1| polymerase II polypeptide J [Ajellomyces capsulatus G186AR]
gi|240278457|gb|EER41963.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
gi|325090627|gb|EGC43937.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 168
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT+I + A FT +E+HT+GN++R +L +VLF+GYK+PH
Sbjct: 46 RFESFVLLPGEKKVEVEVDTRIPSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPH 105
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL K I+R+ T Q +P +A A ++L K+L +L F
Sbjct: 106 PLVPKFILRVQTDGQITPKEAVITACHELVKDLGSLSREF 145
>gi|321251977|ref|XP_003192244.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317458712|gb|ADV20457.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 162
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 72/106 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+R + +++ + K ++ D K+ NA++ I R++HT+GN+LR QL D VLFAG
Sbjct: 1 MNQPNRVDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ I+++I T +S+P +A +A ++L ++ +K+ F+
Sbjct: 61 YKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQFQ 106
>gi|392562097|gb|EIW55278.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 139
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYE +V+ EG + V DTKI NAA+ I +++HT+ N+LR QL V FAG
Sbjct: 1 MNAPNRYELYVLEEGERPVEVTEDTKIPNAATVKIVKQDHTLANLLRSQLLSMPQVTFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL +++I T +P Q A L + TL++ F+
Sbjct: 61 YKVPHPLHPYFLLKIQTDGSVTPTQVLETACTKLIGTIATLEAKFK 106
>gi|58263494|ref|XP_569157.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134108320|ref|XP_777111.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259796|gb|EAL22464.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223807|gb|AAW41850.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 162
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 72/106 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+R + +++ + K ++ D K+ NA++ I R++HT+GN+LR QL D VLFAG
Sbjct: 1 MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ I+++I T +S+P +A +A ++L ++ +K+ F+
Sbjct: 61 YKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQFQ 106
>gi|407921830|gb|EKG14968.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 121
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KKV + DT++ N A FT +E+HT+ N+L +LH+ + V FAG
Sbjct: 1 MNAPDRFELFLLGDGEKKVEMKHDTRVPNTAIFTFNKEDHTLANLLTARLHKYKYVSFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL +R+ T +P +A A D+ ++L+ F
Sbjct: 61 YRVPHPLFASFELRVGTDGTVAPKEAIVNACRDVVQDLEVFSREF 105
>gi|405118462|gb|AFR93236.1| DNA-directed RNA polymerase II kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 162
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 72/106 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+R + +++ + K ++ D K+ NA++ I R++HT+GN+LR QL D VLFAG
Sbjct: 1 MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ I+++I T +S+P +A +A ++L ++ +K+ F+
Sbjct: 61 YKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQFQ 106
>gi|425766844|gb|EKV05438.1| hypothetical protein PDIP_82960 [Penicillium digitatum Pd1]
gi|425780180|gb|EKV18198.1| hypothetical protein PDIG_11460 [Penicillium digitatum PHI26]
Length = 127
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE ++ G K+ E DT++ +AA FT +E+HT+GN+LR +L + +V+FA
Sbjct: 1 MNAPDRYEAILLAPGESKIDVEIDTRLPSAAIFTFRKEDHTLGNMLRHRLLKTAHVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL + +RI T + +P QA A L K+L L F
Sbjct: 61 YRVPHPLTPEFQLRIQTDGEVTPRQAVINASEALIKDLGILSREF 105
>gi|255953613|ref|XP_002567559.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589270|emb|CAP95410.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 128
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDRYE ++ G K+ E DT++ +AA FT +E+HT+GN+LR +L + +V+FA
Sbjct: 1 MNAPDRYEAILLAPGENKIDVEVDTRLPSAAIFTFHKEDHTLGNMLRQRLLKTAHVIFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL + +R+ T + +P QA A L K+L L F
Sbjct: 61 YRVPHPLTPEFQLRVQTDGEITPRQAVINASQALIKDLGILSREF 105
>gi|219122878|ref|XP_002181764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407040|gb|EEC46978.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 125
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 1 MNAPDRYERFVVPE--GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLF 58
MNAP+R F++ E G +K+ Y DTK+ NA +F + +E+HT+ N+LRMQL RD V F
Sbjct: 1 MNAPERASSFLLDEDSGERKIVYTTDTKVTNAGTFRLNKEDHTVLNLLRMQLLRDPGVRF 60
Query: 59 AGYKLPHPLQYKIIVRIHT-TSQSSPMQAYNQAINDLDKELDTL 101
AGY PHPL + +++ T +S +SP + + AI DL E D L
Sbjct: 61 AGYIHPHPLINYMELKVQTNSSHTSPTEVLSNAIEDLGSETDHL 104
>gi|392576553|gb|EIW69684.1| hypothetical protein TREMEDRAFT_44159 [Tremella mesenterica DSM
1558]
Length = 161
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 70/105 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N PDR + +++ E K ++ D KI NAA+ +++++HT+GN++R QL D +VLFAG
Sbjct: 4 INQPDRNDVWILDENDKPLTITEDPKIPNAATIMMKKQDHTMGNMIRAQLLLDPSVLFAG 63
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL+ I+++I T +S+P A +A L ++L +K F
Sbjct: 64 YKVPHPLENDILIKIQTDERSNPADALKRACTLLIQQLTEVKRQF 108
>gi|291000204|ref|XP_002682669.1| predicted protein [Naegleria gruberi]
gi|284096297|gb|EFC49925.1| predicted protein [Naegleria gruberi]
Length = 140
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+ +E F + EG K+ E+ K+ NAA+F + +E+HT+GNI+RM+LH D+ VLFAG
Sbjct: 1 MNKPEAHELFDL-EGEIKLREEKIEKMPNAANFIVNKEDHTLGNIIRMRLHEDKRVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHPL++ I ++I TT P A I+ L ++ + +K F+
Sbjct: 60 YRNPHPLEHHIEIKIQTTDDIEPRDALVGTIDSLIRDFNYMKREFK 105
>gi|295661939|ref|XP_002791524.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280081|gb|EEH35647.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 169
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E FV+ G KKV E DT++ + A FT +E+HT+GN++R +L +VLF+GYK+PH
Sbjct: 46 RFESFVLLPGEKKVEVEVDTRVPSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPH 105
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL K I+R+ T Q +P +A A ++L K+L L F
Sbjct: 106 PLIPKFILRVQTDGQITPKEAVITACHELVKDLGALSREF 145
>gi|403216456|emb|CCK70953.1| hypothetical protein KNAG_0F02910 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G K+ + DTK NA T +E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGDGESKLVIDPDTKSPNAIVITFNKEDHTLGNLIRAELLNDSKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI T P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRIQTVEGYDPKDALKNACNGIINKLGILKTNFE 106
>gi|298713624|emb|CBJ33676.1| RNA polymerase II core subunit [Ectocarpus siliculosus]
Length = 170
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%)
Query: 11 VVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
P ++++Y DTKI +A +F I +E+HT+GN+LRMQL D V FAGY PHPL+ K
Sbjct: 58 AAPPRPRRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENK 117
Query: 71 IIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
I +++ T ++P+ A + A DL +E++ L+ F+
Sbjct: 118 IHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQ 153
>gi|121711221|ref|XP_001273226.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
gi|119401377|gb|EAW11800.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
Length = 165
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
+ P +E FV+ G +KV + DT+I + A FT +E+HT+GN+LR +L + +VLFAGY
Sbjct: 38 DQPHSFESFVLSPGEEKVEVQTDTRIPSTAIFTFNKEDHTLGNLLRSRLLQSPHVLFAGY 97
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL K +RI T + +P A A +DL K+L L F
Sbjct: 98 KIPHPLVPKFELRIQTDGEVTPKDALLAACHDLVKDLGILSREF 141
>gi|119482558|ref|XP_001261307.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
gi|119409462|gb|EAW19410.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
Length = 167
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 66/102 (64%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
P +E FV+ G +KV E DT+I +++ FT +E+HT+GN+LR +L ++ +V+FAGYK+
Sbjct: 42 PRSFESFVLSPGEEKVEVEADTRIPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKV 101
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PHPL K +R+ T + +P A A +DL K+L L F
Sbjct: 102 PHPLVPKFELRVQTDGEITPKDALLAACHDLVKDLGILSREF 143
>gi|451848796|gb|EMD62101.1| hypothetical protein COCSADRAFT_38897 [Cochliobolus sativus ND90Pr]
Length = 130
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG +KV + +T++ N A FT +E+HT+GN+L +L ++ V+FA
Sbjct: 1 MNAPDRFELFLLDEGQEKVEEKAETRVPNTAVFTFNKEDHTLGNLLSQRLLKNPAVMFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL +R+ T +P +A + ++ +L L +F+
Sbjct: 61 YKVPHPLFATFELRVQTDGSITPKEAVMKTCREVIADLSKLNDSFQ 106
>gi|146324809|ref|XP_749122.2| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus
fumigatus Af293]
gi|129556648|gb|EAL87084.2| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus Af293]
Length = 167
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 66/102 (64%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
P +E FV+ G +KV E DT+I +++ FT +E+HT+GN+LR +L ++ +V+FAGYK+
Sbjct: 42 PRSFESFVLSPGEEKVEIETDTRIPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKV 101
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PHPL K +R+ T + +P A A +DL K+L L F
Sbjct: 102 PHPLVPKFELRVQTDGEITPKDALLAACHDLVKDLGILSREF 143
>gi|339243709|ref|XP_003377780.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella
spiralis]
gi|316973374|gb|EFV56975.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella
spiralis]
Length = 114
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 66/99 (66%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K+ +++TK+ NA FT+ +E+HTIG++++ L + VLF G
Sbjct: 1 MNAPQAFESFLLFEGEEKLVVQKETKVPNAYLFTLNKEDHTIGHLIKDHLMSNPKVLFVG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELD 99
++ PHPL++KI +R+ TT P++ A++DL D
Sbjct: 61 FRAPHPLEHKIYLRLQTTPDVHPIRVMKLALSDLVTMCD 99
>gi|335345786|gb|AEH41473.1| DNA-directed RNA polymerase II subunit RPB11a [Endocarpon pusillum]
Length = 124
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 62/104 (59%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ +E+F++ EG KKV DT++ N F +E+HT+GN+LR +L +D V FA Y
Sbjct: 3 NKPEPFEQFLLAEGEKKVEMTLDTRMPNTCIFKFNKEDHTLGNLLRARLLQDRRVTFAAY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+PHPL +R+ T SP +A QA D +L+TL F
Sbjct: 63 KVPHPLFPTFELRVQTDGSLSPKEALLQACRDSVSDLNTLSREF 106
>gi|302677665|ref|XP_003028515.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
gi|300102204|gb|EFI93612.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
Length = 149
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE +V+ + K + DTK+ NA + I +++HT+ N+LR QL + VLFAG
Sbjct: 1 MNQPNRYELYVLEDEEKFLEVNEDTKVPNAVTVKIVKQDHTLANMLRSQLLNNPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL+ ++RI T +P A QA L + LK+ FE
Sbjct: 61 YKVPHPLEPYFLLRIQTDGTITPEIALEQACTQLLAVVSVLKAKFE 106
>gi|242775658|ref|XP_002478685.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722304|gb|EED21722.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
Length = 156
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P + E F++ EG KK+ + DT+ + + FT+ +E+H++GN+LR +L ++ +V FA
Sbjct: 29 VNVPRKTESFILGEGEKKIEEKADTRTPSTSIFTLNKEDHSVGNLLRGRLLQNRHVTFAA 88
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL +K+ +R+ T + +P +A A +D ++L TL F
Sbjct: 89 YKIPHPLVHKVELRVQTDGEITPKEALLAACHDTVRDLGTLSREF 133
>gi|311259036|ref|XP_003127906.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Sus
scrofa]
Length = 140
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
M+A +E F++ + +K++ +DTK NA FTI++E+HT+GN+++ QL +D VLFAG
Sbjct: 1 MHALPAFESFLLFK-DEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
++PHP ++KIIV + TT +P +A I DL +L L+
Sbjct: 60 CQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLE 101
>gi|353241710|emb|CCA73506.1| related to DNA-directed RNA polymerase 13.3K chain [Piriformospora
indica DSM 11827]
Length = 138
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDR +V+ +G + + DTKI NAA+F I +++HT+ N++R QL D+NV+FAGY
Sbjct: 5 NLPDRQTLYVLQDGERPLEIIEDTKIPNAATFRIYKQDHTLANMIRTQLLEDKNVIFAGY 64
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
K+PHPL+ ++++ T +P N A + + L+ FE
Sbjct: 65 KVPHPLEPYFLLKVQTNGSLTPTDVVNTACASIIATVSQLEKRFE 109
>gi|67470818|ref|XP_651372.1| RNA polymerases II subunit [Entamoeba histolytica HM-1:IMSS]
gi|56468094|gb|EAL45982.1| RNA polymerases II subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042561|gb|EKE41399.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
gi|449707159|gb|EMD46864.1| RNA polymerases II subunit, putative [Entamoeba histolytica KU27]
Length = 112
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD E +V+ +K+ E + + FT+ +E+HT GNILR+ L R+ +VLFAG
Sbjct: 1 MNAPDLNEIYVMKPNEQKILCEENGHV---CKFTLVKEDHTAGNILRVMLLRNPHVLFAG 57
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHPL Y I + I T +P QA QA++D+ E++ +++ FE
Sbjct: 58 YRQPHPLNYVIEMTIRTDMTITPKQALEQAMDDVIHEIEIMQNEFE 103
>gi|167377825|ref|XP_001734557.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|167384275|ref|XP_001736882.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|165900590|gb|EDR26886.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
gi|165903881|gb|EDR29278.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
Length = 112
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD E +V+ +K+ E + + FT +E+HT GNILR+ L R+ +VLFAG
Sbjct: 1 MNAPDLNEIYVMKPNEQKILCEENGHV---CKFTFVKEDHTAGNILRVMLLRNPHVLFAG 57
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHPL Y I + I T + +P QA QA++D+ E++ +++ FE
Sbjct: 58 YRQPHPLNYIIEMTIRTDTTITPKQALEQAMDDVIHEIEIMQNEFE 103
>gi|238579202|ref|XP_002388973.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
gi|215450762|gb|EEB89903.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
Length = 151
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE FV+ +G + V DTKI NA + I +++HT+ +LR QL VLFAG
Sbjct: 1 MNQPNRYELFVLDDGERPVEVTEDTKIPNAGTIKIVKQDHTLAGMLRAQLLSMPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL I++I T +P QA + L +L++ F+
Sbjct: 61 YKVPHPLHPYFIIKIQTDGSITPEAILEQAALKVIGTLASLEAKFK 106
>gi|358373008|dbj|GAA89608.1| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus kawachii
IFO 4308]
Length = 161
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 61/100 (61%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
RYE FV+ G KV E DT+I ++A FT +E+HT+GN++R +L + +VLFA YK+PH
Sbjct: 38 RYESFVLANGENKVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPH 97
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL +R+ T SP A A ++L ++L L F
Sbjct: 98 PLVPNFQLRVQTDGDVSPKDAVIAACHELVRDLGILSREF 137
>gi|294883186|ref|XP_002769975.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239873898|gb|EER02672.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 2 NAPDRYERFVVPEG-------TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE 54
N PD E +PEG +++ YE + + N +FTI E+HT + LR +L R+
Sbjct: 12 NKPDPDEILQLPEGDEHLHGGERRIYYEPELRQDNTGTFTIWLEDHTAAHALRSELLRNR 71
Query: 55 NVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
V FAGYK+PHPL+ K+++R+ TSQ++P++A +A+ L + D L+ F+
Sbjct: 72 QVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMKEALKSLRSKGDQLEKEFD 123
>gi|294948044|ref|XP_002785588.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239899567|gb|EER17384.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 2 NAPDRYERFVVPEG-------TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE 54
N PD E +PEG +++ YE + + N +FTI E+HT + LR +L R+
Sbjct: 12 NKPDPDEILQLPEGDEHLHGGERRIYYEPELRQDNTGTFTIWLEDHTAAHALRSELLRNR 71
Query: 55 NVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
V FAGYK+PHPL+ K+++R+ TSQ++P++A +A+ L + D L+ F+
Sbjct: 72 QVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMKEALKSLRSKGDQLEKEFD 123
>gi|402222352|gb|EJU02419.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 149
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA R+E F + +G K + DTKI NAA+ + +++HT+ N++R L ++ VLFAG
Sbjct: 1 MNALQRFELFTLNDGEKAIEVVEDTKIPNAATIVVAKQDHTLANMIRGYLLKNPKVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
YK PHPL I++I T S+P++ + N L
Sbjct: 61 YKAPHPLDPHFILKIQTDGTSTPLEVLQETCNAL 94
>gi|388579813|gb|EIM20133.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wallemia sebi CBS 633.66]
Length = 136
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 57/77 (74%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+R+E F+VP+ KV+ D++I + ++ T+ R++HTI N+L ++ +D+NV+F+G
Sbjct: 1 MNAPNRFELFIVPDNEPKVTVVDDSRISSTSTITLNRQDHTIANLLSNEISKDKNVVFSG 60
Query: 61 YKLPHPLQYKIIVRIHT 77
Y++PHPL K +R+ T
Sbjct: 61 YRVPHPLNPKSEIRVQT 77
>gi|429860805|gb|ELA35525.1| amino acid permease [Colletotrichum gloeosporioides Nara gc5]
Length = 855
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 63/105 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + + + N + F +++E+HT+GN+L L + +NVL AG
Sbjct: 731 MNAPDRFELFLLADGEKKIEEKVFSGMSNTSDFILKKEDHTLGNLLSEHLKQHKNVLMAG 790
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T P +A Q I L ++ L F
Sbjct: 791 YKISHPNVPELFIRVQTDGSIPPKEALVQVIKRLMQDFSHLSREF 835
>gi|395862822|ref|XP_003803624.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-b1-like [Otolemur garnettii]
Length = 154
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 8 ERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILR----MQLHRDENVLFAGYKL 63
E F++ + KK+ +DTK NA FTI +E+HT+GNI++ D +LFAGYK+
Sbjct: 30 ESFLLFKDEKKIPVNKDTKEPNACLFTINKEDHTLGNIIKSASLXDPKSDTXLLFAGYKI 89
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
PHPL++KI + + TT S +A+ AI DL EL L+ F+
Sbjct: 90 PHPLEHKINIXVQTTPDYSLQEAFTSAITDLINELSQLEERFQ 132
>gi|403367466|gb|EJY83556.1| DNA-directed RNA polymerase II subunit RPB11 [Oxytricha trifallax]
Length = 138
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 62/90 (68%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ YE D+KI N A+ TIE E+HT+GN +R+QL +D V F+GY++PHPL++K+ +++ T
Sbjct: 7 RIKYEIDSKIRNFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQT 66
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFEF 107
+ +P +A A + ++ +K++F+
Sbjct: 67 NGEINPAEAVQNACLNTHAHVEQIKTSFQM 96
>gi|160331498|ref|XP_001712456.1| rpb11 [Hemiselmis andersenii]
gi|159765904|gb|ABW98131.1| rpb11 [Hemiselmis andersenii]
Length = 106
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 65/103 (63%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ E V+PE +K+++ +D K N F IE+E+HT+G+++ +L ++++V+F+GY
Sbjct: 3 NTPNALESLVLPETLQKITFYKDEKNKNCGYFKIEKEDHTLGHLIHSKLLKEKSVIFSGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSA 104
K PHPL++ I ++I T SP A++ + DL E L+
Sbjct: 63 KRPHPLEHFIYLKIITDGVFSPKDAFDSVLKDLYIEFSYLEDG 105
>gi|403359539|gb|EJY79434.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 138
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 62/90 (68%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ YE D+KI N A+ TIE E+HT+GN +R+QL +D V F+GY++PHPL++K+ +++ T
Sbjct: 7 RIKYEIDSKIRNFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQT 66
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFEF 107
+ +P +A A + ++ +K++F+
Sbjct: 67 NGEINPAEAVQNACLNTHAHVEQIKTSFQM 96
>gi|260808385|ref|XP_002598988.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
gi|229284263|gb|EEN55000.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
Length = 117
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 1 MNAPDRYERFVVPEGTKKVSY----ERDTKIINAASFTIEREEHTIGNILRMQLHRDENV 56
MNAP +E F++ EG KK S+ + D +++ S + + I +R QL +D V
Sbjct: 1 MNAPPTFESFLLFEGEKKSSFLATIDADARLV---SVLVASQILEIAKSIRQQLLKDPQV 57
Query: 57 LFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+FAGYK+PHPL++K ++R+ TT SP +A+ AI DL E+ L+ F+
Sbjct: 58 IFAGYKVPHPLEHKFVLRLQTTPDYSPQEAFTNAITDLISEVSLLEERFK 107
>gi|440632021|gb|ELR01940.1| hypothetical protein GMDG_05113 [Geomyces destructans 20631-21]
Length = 189
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N DR+E F++ +G KK++ DT+ N++ FTI +E+HT+ N+LR L +D +V FAG
Sbjct: 63 VNITDRFELFLLGDGEKKITEAVDTRTPNSSIFTILKEDHTLANLLRAHLLKDPHVTFAG 122
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL I +R+ T +P +A L EL L F
Sbjct: 123 YRVPHPLFATIELRVQTDGTLTPKEAVIGIAKSLVAELAQLSREF 167
>gi|399949660|gb|AFP65318.1| ring-box protein 11 [Chroomonas mesostigmatica CCMP1168]
Length = 112
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 62/102 (60%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + VP KK++Y +D K +N IERE+HT+GNI+ + +++ V+F+GY
Sbjct: 3 NTPNPLDAITVPASLKKINYYKDEKKLNCGYIKIEREDHTLGNIIHKNILKNKFVVFSGY 62
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKS 103
K HPL+Y I+ +I T SP+ A+ + D+ +L L++
Sbjct: 63 KKTHPLEYFILFKIITDGNISPLTAFENVLQDIYIQLSQLET 104
>gi|378725610|gb|EHY52069.1| DNA-directed RNA polymerase II subunit J [Exophiala dermatitidis
NIH/UT8656]
Length = 269
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDR E F++ G KKV DT+ N F +E+HT+GN L QLH++ +V +A Y
Sbjct: 147 NIPDRTEAFLLDPGQKKVEPGHDTRTPNTMIFVYNKEDHTLGNALVDQLHKNSHVTYAAY 206
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
++PHPL + +RI T + +P +A A D+ +EL+ +K F
Sbjct: 207 RVPHPLFARFELRIQTDGEITPKEALLAASRDVIRELEVIKVKF 250
>gi|380474439|emb|CCF45777.1| hypothetical protein CH063_03693 [Colletotrichum higginsianum]
Length = 125
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + + + N + F I++E+HT+GN+L L +NVL AG
Sbjct: 1 MNAPDRFELFLLGDGEKKIEEKVFSGMSNTSDFVIKKEDHTLGNLLSEHLKAHKNVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T + +A Q I L ++L L F
Sbjct: 61 YKIAHPNVPEMFIRVQTDGSITAKEALVQVIKKLMQDLSHLSREF 105
>gi|310792346|gb|EFQ27873.1| hypothetical protein GLRG_03017 [Glomerella graminicola M1.001]
Length = 125
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + + + N + F I++E+HT+GN+L L +NVL AG
Sbjct: 1 MNAPDRFELFLLADGEKKIEEKVFSGMSNTSDFIIKKEDHTLGNLLSEHLKMHKNVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T + +A Q I L ++L L F
Sbjct: 61 YKISHPNVPEMFIRVQTDGSITAKEALVQVIKKLMQDLSHLSREF 105
>gi|330929492|ref|XP_003302661.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
gi|311321850|gb|EFQ89261.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
Length = 151
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 63/102 (61%)
Query: 5 DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+R+E F++ EG +KV + +T++ N A FT +E+HT+GN+L +L ++ +LFA YK+P
Sbjct: 26 NRFELFLLDEGQQKVEEKAETRVPNTAVFTFNKEDHTLGNLLSARLQKNPAILFAAYKVP 85
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
HPL +R+ T +P +A + ++ EL L +F+
Sbjct: 86 HPLFATFELRVQTDGSITPKEAVIRTCTEVITELSKLNDSFQ 127
>gi|254570701|ref|XP_002492460.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|238032258|emb|CAY70274.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|328353526|emb|CCA39924.1| DNA-directed RNA polymerase II subunit J [Komagataella pastoris CBS
7435]
Length = 118
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+ K+ D+++ N ERE+HT+ N+LR +L +V F
Sbjct: 1 MNAPDRFELFILPDDVPKLKITPDSRVPNCIIIKFEREDHTLANLLREELALYPDVTFVA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HPL ++R+ T + P QA +A + +L TL F
Sbjct: 61 YKVEHPLFANFVMRLQTEEGTRPKQALERACASIINKLKTLDHKF 105
>gi|402081162|gb|EJT76307.1| hypothetical protein GGTG_06227 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G +K++ +T + N + FT +E+HT+GN+L L + NVL AG
Sbjct: 1 MNAPDRFELFLLADGEEKITETINTTMSNCSDFTFMKEDHTLGNLLCEHLKQQPNVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP + +RI T + +P +A + + L + S F
Sbjct: 61 YKVGHPNVPEFFLRIQTDGKVTPKVCLVEACRTIVQLLSQISSQF 105
>gi|209731212|gb|ACI66475.1| DNA-directed RNA polymerase II subunit RPB11 [Salmo salar]
Length = 128
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KK+ + + + N + F + +E+HT+GN+L L NV AG
Sbjct: 1 MNAPDRFELFLLSEGEKKIEEKVYSGMSNTSDFVLNKEDHTLGNLLAEHLKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKL HP ++ +R+ T +P + L +L++L F
Sbjct: 61 YKLGHPNVPQLFIRLQTDGTKTPRDVFTSVCEKLINQLESLHQEF 105
>gi|115394874|ref|XP_001213448.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193017|gb|EAU34717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1608
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 63/100 (63%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
RYE FV+ G KV E DT+I ++A FT +E+HT+GN+L +L + +VLFA YK+PH
Sbjct: 43 RYESFVLASGENKVEMEIDTRIPSSAIFTFNKEDHTLGNLLSSRLLQSSHVLFAAYKVPH 102
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PL K ++R+ T + +P A A ++L ++L L F
Sbjct: 103 PLDPKFLLRVQTDGEITPKDAVIAACHELVRDLGILSREF 142
>gi|399217331|emb|CCF74218.1| unnamed protein product [Babesia microti strain RI]
Length = 116
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+ + +PEG K+ + DTK +F I E+HT+G +++ QL+ DENV F G
Sbjct: 8 INCPETGDLLDLPEGLNKIEWIPDTKFSMCGTFIIHLEDHTMGALIKSQLNLDENVTFVG 67
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL+ + +R+ T S+ SP+ + A+ L ++ LK+ +
Sbjct: 68 YRIPHPLESLLELRVKTRSK-SPISSLLYALGMLKSDVSNLKNDY 111
>gi|354477592|ref|XP_003501003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Cricetulus griseus]
Length = 99
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 18/105 (17%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL ++ VLF
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKETQVLF-- 58
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
TT SP +A+ AI DL EL L+ F
Sbjct: 59 ----------------TTPDYSPQEAFTNAITDLISELSLLEERF 87
>gi|322704990|gb|EFY96579.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K++ + + + N + F + +E+HT+GN+L + NV AG
Sbjct: 1 MNAPDRFELFLLSEGEKRIEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKL HP ++ +R+ T +P + + L +L++L F
Sbjct: 61 YKLGHPNVPQLFIRVQTDGTKTPREVFTAVCEKLINQLESLHQEF 105
>gi|322696273|gb|EFY88068.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium acridum
CQMa 102]
Length = 128
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K++ + + + N + F + +E+HT+GN+L + NV AG
Sbjct: 1 MNAPDRFELFLLSEGEKRIEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKL HP ++ +R+ T +P + + L +L++L F
Sbjct: 61 YKLGHPNVPQLFIRVQTDGTKTPREVFTAVCEKLINQLESLHQEF 105
>gi|400596490|gb|EJP64261.1| DNA-directed RNA polymerase 13.3K chain [Beauveria bassiana ARSEF
2860]
Length = 128
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KK+ + + + N + F +++E+HT+GN+L L NVL AG
Sbjct: 1 MNAPDRFELFLLAEGEKKIEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKLHPNVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKL HP ++ +R+ T + + L +L+ L F
Sbjct: 61 YKLGHPNVPELFIRVQTDGTVTSRDVFTSVCEKLINQLEMLHQKF 105
>gi|209879369|ref|XP_002141125.1| RNA polymerase II subunit RPB11 [Cryptosporidium muris RN66]
gi|209556731|gb|EEA06776.1| RNA polymerase II subunit RPB11, putative [Cryptosporidium muris
RN66]
Length = 121
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+V +E ++++ SF I E+HT+GN+LR QL RD +V+FA YK+PHPL+ + +RI T
Sbjct: 23 RVKWEVESRVPCCGSFMIMLEDHTLGNLLRTQLLRDPSVIFAAYKVPHPLEPMVQIRIQT 82
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
++P A AI + E T+ + F+
Sbjct: 83 RETTTPFVAMQNAIQMILAETQTVANTFK 111
>gi|389623207|ref|XP_003709257.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
gi|351648786|gb|EHA56645.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
Length = 130
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ G +K++ +T + N + FT ++E+HT+GN+L L + NVL AG
Sbjct: 1 MNAPDRFELFLLEPGEEKLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP + +RI T + +P A + L +++ F
Sbjct: 61 YKVSHPNVPEFFLRIQTDGKVTPKACLLDACRTILHSLGQIRTEF 105
>gi|451998617|gb|EMD91081.1| hypothetical protein COCHEDRAFT_1103438, partial [Cochliobolus
heterostrophus C5]
Length = 125
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 62/101 (61%)
Query: 6 RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R+E F++ EG +KV + +T++ N A FT +E+HT+GN+L +L ++ ++FA YK+PH
Sbjct: 1 RFELFLLDEGQEKVEEKAETRVPNTAVFTFNKEDHTLGNLLSQRLLKNPAIMFAAYKVPH 60
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
PL +R+ T +P +A + ++ +L L +F+
Sbjct: 61 PLFATFELRVQTDGSITPKEAVMKTCREVIADLSKLNDSFQ 101
>gi|126654283|ref|XP_001388406.1| RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117499|gb|EAZ51599.1| RNA polymerase II, putative [Cryptosporidium parvum Iowa II]
Length = 115
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+V ++ ++++ SF I E+HT+GN++ QL RD NV+FAGYK+PHPL+ + +RI T
Sbjct: 17 RVQWKVESRVPCCGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQT 76
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
++P A AI + E + ++F+
Sbjct: 77 RENTTPFVAIQNAIKSIQMESQVILNSFK 105
>gi|358392256|gb|EHK41660.1| hypothetical protein TRIATDRAFT_302116 [Trichoderma atroviride IMI
206040]
Length = 128
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + + + N + F +++E+HT+GN+L L NV AG
Sbjct: 1 MNAPDRFELFLLADGEKKIEEKVYSGMSNTSDFVLKKEDHTLGNLLAEHLKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T SP + L +L+ L F
Sbjct: 61 YKIAHPNVPELYIRVQTDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|340522866|gb|EGR53099.1| predicted protein [Trichoderma reesei QM6a]
Length = 128
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + + + N + F +++E+HT+GN+L L NV AG
Sbjct: 1 MNAPDRFELFLLADGEKKIEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T SP + L +L+ L F
Sbjct: 61 YKIAHPNVPELYIRVQTDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|358389646|gb|EHK27238.1| hypothetical protein TRIVIDRAFT_63005 [Trichoderma virens Gv29-8]
Length = 126
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KK+ + + + N + F +++E+HT+GN+L + NV AG
Sbjct: 1 MNAPDRFELFLLGEGEKKIEEKVYSGMSNTSDFILKKEDHTLGNLLAEHIKAHPNVYMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+ HP ++ +R+ T SP + L +L+ L F
Sbjct: 61 YKIAHPNVPELYIRVQTDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|12718487|emb|CAC28816.1| related to DNA-directed RNA polymerase 13.3K chain [Neurospora
crassa]
Length = 133
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + T + N + F I +E+HT+GN+L L + +VL AG
Sbjct: 1 MNAPDRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP ++ +RI T +P +A A L L F+
Sbjct: 61 YKIAHPNVPELFIRIQTDGSITPREALVGACKQLVAMYGQLGREFQ 106
>gi|71650711|ref|XP_814048.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878987|gb|EAN92197.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 8 ERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
+ V +GT+K++ E +K+ N++ F +++E+HT+ N+LRM+LH D V AGY++PHP
Sbjct: 18 DSLVDTKGTRKITEEISSKMPNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPT 77
Query: 68 QYKIIVRIHTTSQS------SPMQAYNQAINDLDKELDTLKSAFEF 107
Q+++ +R+ T+S SP A +AI+ ++L + + +
Sbjct: 78 QHRVELRVQTSSDGSGRPIPSPKDALLKAIDACMQDLQSFEEQLRW 123
>gi|71668504|ref|XP_821132.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886501|gb|EAN99281.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 8 ERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
+ V +GT+K++ E +K+ N++ F +++E+HT+ N+LRM+LH D V AGY++PHP
Sbjct: 18 DSLVDTKGTRKITEEISSKMPNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPT 77
Query: 68 QYKIIVRIHTTSQS------SPMQAYNQAINDLDKELDTLKSAFEF 107
Q+++ +R+ T+S SP A +AI+ ++L + + +
Sbjct: 78 QHRVELRVQTSSDGSGRPIPSPKDALLKAIDACMQDLQSFEEQLRW 123
>gi|429329665|gb|AFZ81424.1| RNA polymerase small subunit, putative [Babesia equi]
Length = 92
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F+IE E+HT+GN+LR L ++V+FAGY +PHP+Q ++ +RI TT Q + ++ ++Q++
Sbjct: 9 TFSIENEDHTLGNVLRTLLVERDDVVFAGYSVPHPMQPEMNIRIQTTGQPA-VEVFSQSL 67
Query: 92 NDLDKELDTLKSAFE 106
DL + DTL AF+
Sbjct: 68 GDLVEICDTLTDAFK 82
>gi|340058381|emb|CCC52737.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 132
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV 73
+G++K+ E +K+ N++ F I++E+HT+ N+LRM+LH + V AGY++PHP Q+++ +
Sbjct: 23 KGSRKIVEEVSSKMPNSSLFKIDKEDHTLANLLRMRLHENSLVRIAGYRVPHPTQHRVEL 82
Query: 74 RIHTTSQSS------PMQAYNQAINDLDKELDTLKSAFEF 107
R+ T S S P +A +A++ K+L T +
Sbjct: 83 RVQTASDGSGRAIPTPKEALLEAVDGCMKDLQTFEELLRL 122
>gi|302501322|ref|XP_003012653.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
gi|291176213|gb|EFE32013.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
Length = 149
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 54/77 (70%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ A FT +E+HT+GN++R +L ++++VLF+GY++PHPL +K+++R+ T Q +P +A
Sbjct: 50 STAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQTDGQITPKEAVL 109
Query: 89 QAINDLDKELDTLKSAF 105
A +DL K+L F
Sbjct: 110 AACHDLVKDLGIFSREF 126
>gi|380092277|emb|CCC10053.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 131
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ +G KK+ + T + N + F I +E+HT+ N+L L + +VL AG
Sbjct: 1 MNAPDRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP ++++RI T +P +A A L L F+
Sbjct: 61 YKIAHPNVPEVMIRIQTDGSITPREALVGACKQLVAMYGQLGREFQ 106
>gi|367038609|ref|XP_003649685.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL
8126]
gi|346996946|gb|AEO63349.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL
8126]
Length = 138
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG KK++ + + + N + F + +E+HT+GN+L L +V+ AG
Sbjct: 1 MNAPDRFELFLLQEGEKKITEKVVSGMSNTSDFILLKEDHTLGNLLSEHLKMAPHVMMAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
YK+ HP ++++R+ T +P +A + L
Sbjct: 61 YKIDHPNVPEVLIRVQTDGSITPREALVRVCKQL 94
>gi|428671107|gb|EKX72026.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 122
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+ + + EG KKV + DT+ +F + E+HT G ++R +L RDE V F G
Sbjct: 8 INRPETADMVELAEGIKKVEWIPDTRFPLCGTFIVHLEDHTFGALIRSRLSRDERVTFVG 67
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL+ K+ +R+ T SP AI+ L LK +
Sbjct: 68 YRIPHPLENKLEIRLR-TKVDSPFTVILNAISGLKGNFSHLKKVY 111
>gi|71754779|ref|XP_828304.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833690|gb|EAN79192.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334129|emb|CBH17123.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 132
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 61/96 (63%), Gaps = 6/96 (6%)
Query: 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
+K+ E +K+ N++ F ++RE+HT+ N+LRM+LH + V AGY++PHP Q+++ +R+
Sbjct: 25 CRKIVEEVSSKMPNSSLFKLDREDHTLANLLRMRLHENPLVHIAGYRVPHPTQHRVELRV 84
Query: 76 HTTSQS------SPMQAYNQAINDLDKELDTLKSAF 105
T+S +P +A +A+ K+L+ + AF
Sbjct: 85 QTSSDGTGKPIPTPKEALLEAVGSCMKDLEEFEGAF 120
>gi|396457950|ref|XP_003833588.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
gi|312210136|emb|CBX90223.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
Length = 163
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
+ P +E F++ +G KV + +T++ + A FT +E+HT+GN+L +L + + V+FA Y
Sbjct: 35 HVPASFELFLLDDGQAKVETKEETRVPHTAIFTFNKEDHTLGNLLSQRLLKYDQVMFAAY 94
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
K+PHPL +R+ T +P A + D+ ++L L +F+
Sbjct: 95 KVPHPLFAMFELRVQTDGSITPKDAVVRCCRDVVQDLQKLNDSFQ 139
>gi|395842980|ref|XP_003794284.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Otolemur
garnettii]
gi|402863133|ref|XP_003895886.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Papio
anubis]
Length = 87
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 30/105 (28%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKK------------------------------QLLKDPQVLFAG 30
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 31 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 75
>gi|71026805|ref|XP_763046.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68349999|gb|EAN30763.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 133
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+ + + +G KKV + DT+ +F + E+HT G+++R +L +D+ V F G
Sbjct: 8 INKPETADMVELAQGLKKVEWIPDTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVG 67
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFL 108
Y++PHPL+ K+ +RI T + +P AI +L L LK+ + L
Sbjct: 68 YRMPHPLENKLEIRIRTKTD-NPFTVILSAITNLRTNLSHLKNLYLVL 114
>gi|440302854|gb|ELP95160.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
invadens IP1]
Length = 110
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD E + + +K+ E + N FT +E+HT GN++R++L D++V+FAG
Sbjct: 1 MNAPDLNEIYRMQPNEQKILCEENG---NVCKFTFVKEDHTAGNMIRVELLNDKHVIFAG 57
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+ PHPL+Y I + I T +P A A++ + +++ K F+
Sbjct: 58 YRQPHPLKYVIEMTIRTDGVITPKVALENALDRIIRKVKLAKEDFD 103
>gi|300175723|emb|CBK21266.2| unnamed protein product [Blastocystis hominis]
Length = 99
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPD + G KK++ +TK+ N+ + IE E+HT+GNI+RM + D NV F G
Sbjct: 1 MNAPDPSLAVHLDVGMKKITQIVETKMNNSCKYIIEVEDHTLGNIMRMDMIEDPNVKFVG 60
Query: 61 YKLPHPLQYKIIVRI 75
Y++PHPL I +R+
Sbjct: 61 YRVPHPLSTCIEMRV 75
>gi|85000057|ref|XP_954747.1| DNA-directed RNA polymerase II [Theileria annulata strain Ankara]
gi|65302893|emb|CAI75271.1| DNA-directed RNA polymerase II, putative [Theileria annulata]
Length = 124
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+ + + G KKV + DT+ +F + E+HT G+++R +L +D+ V F G
Sbjct: 8 INKPETADMVELAHGLKKVEWIPDTRFPLCGTFIVHLEDHTFGSLIRTKLSKDDRVTFVG 67
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFLD 109
Y++PHPL+ K+ +RI T + +P AI ++ L L++ + ++
Sbjct: 68 YRMPHPLENKLEIRIRTKTD-NPFTVILSAITNIRNNLSHLRNIYMVIN 115
>gi|449480053|ref|XP_002193087.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Taeniopygia guttata]
Length = 94
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 48 MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 25 VQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 82
>gi|402222155|gb|EJU02222.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 148
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
PD VP+G K T + A+F IE E+HT+GN LR + ++ V F GY +
Sbjct: 6 PDDGSLRYVPDGPKISVLPGHTTDYSHATFCIEEEDHTLGNALRWMIMKNPKVEFCGYSM 65
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
PHP +YKI +RI +S + A A+ K+LD L A E
Sbjct: 66 PHPSEYKINLRIQMYDNASSLDALALAL----KQLDDLAGAIE 104
>gi|403223457|dbj|BAM41588.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 116
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
+N P+ + + G KKV + DT+ +F + E+HT G+++R +L +D+ V F G
Sbjct: 8 INKPETADMVELAYGVKKVEWIPDTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVG 67
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL+ K+ +R+ T +P AI++L + L+ +
Sbjct: 68 YRIPHPLENKLEIRLR-TKMDNPFTVVMSAISNLRSNISHLRKVY 111
>gi|119570636|gb|EAW50251.1| hCG1818005, isoform CRA_a [Homo sapiens]
Length = 111
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 49 QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|426357388|ref|XP_004046024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 113
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 49 QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI +L EL L+ F+
Sbjct: 3 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECFQ 60
>gi|302843852|ref|XP_002953467.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
gi|300261226|gb|EFJ45440.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
Length = 104
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AA+F+IE E+HT+ N LR L+++ +V F GY +PHP + + +R+ TT Q + MQA
Sbjct: 10 AATFSIEEEDHTLANSLRFFLNKNPHVSFCGYSMPHPSEELVNLRVQTTGQITAMQAVKA 69
Query: 90 AINDLDKELDTLKS 103
A D+ + D ++S
Sbjct: 70 ACEDMQQVCDHMRS 83
>gi|346325285|gb|EGX94882.1| DNA-directed RNA polymerase II subunit RPB11a, putative [Cordyceps
militaris CM01]
Length = 134
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 1 MNAPDR------YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDE 54
MNAPDR +E F++ EG KK+ + + + N + F +++E+HT+G++L L
Sbjct: 1 MNAPDRANGLYSFELFLLAEGEKKIEEKIYSGMSNTSDFLLKKEDHTLGHLLSEHLKMHP 60
Query: 55 NVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
NVL AGYKL HP ++ +R+ T + + L +L+ L F
Sbjct: 61 NVLMAGYKLGHPNVPELFIRVQTDGTVTSRDVFTAVCEKLINQLEMLHQKF 111
>gi|346974639|gb|EGY18091.1| DNA-directed RNA polymerase II [Verticillium dahliae VdLs.17]
Length = 151
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
+E F++ + KK+ + + N + F I++E+HT+GN++ L ++VL AGYK+PHP
Sbjct: 32 FELFLLSDDEKKIEEKPYAGMSNTSDFVIKKEDHTVGNLISEHLKMHQHVLMAGYKIPHP 91
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
++ +R+ T +P A + I DL K+ L F
Sbjct: 92 NVSEMFIRVQTDGTITPKDAVTEVIKDLMKDFSHLAQEF 130
>gi|395536502|ref|XP_003770254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Sarcophilus harrisii]
Length = 122
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 48 MQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 53 IQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 110
>gi|119570637|gb|EAW50252.1| hCG1818005, isoform CRA_b [Homo sapiens]
Length = 79
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 49 QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|119570638|gb|EAW50253.1| hCG1818005, isoform CRA_c [Homo sapiens]
Length = 69
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 49 QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|399217051|emb|CCF73738.1| unnamed protein product [Babesia microti strain RI]
Length = 88
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F IE E+HT+GN++R L + ++V FAGY +PHP+QY++ +R+ TT + + +QA +++
Sbjct: 9 TFCIENEDHTLGNVVRTILSKKKDVSFAGYTMPHPMQYQVNIRVQTTGKPA-IQAMVESL 67
Query: 92 NDLDKELDTLKSAF 105
+++ + D + F
Sbjct: 68 DEMQQVCDQILGEF 81
>gi|336472984|gb|EGO61144.1| hypothetical protein NEUTE1DRAFT_58240 [Neurospora tetrasperma FGSC
2508]
gi|350293767|gb|EGZ74852.1| RBP11-like subunits of RNA polymerase [Neurospora tetrasperma FGSC
2509]
Length = 141
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
P+R+E F++ +G KK+ + T + N + F I +E+HT+GN+L L + +VL AGYK+
Sbjct: 12 PNRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKI 71
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
HP ++ +RI T +P +A A L L F+
Sbjct: 72 AHPNVPELFIRIQTDGSITPREALVGACKQLVAMYGQLGREFQ 114
>gi|164426902|ref|XP_961128.2| hypothetical protein NCU03782 [Neurospora crassa OR74A]
gi|157071522|gb|EAA31892.2| predicted protein [Neurospora crassa OR74A]
Length = 141
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
P+R+E F++ +G KK+ + T + N + F I +E+HT+GN+L L + +VL AGYK+
Sbjct: 12 PNRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKI 71
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
HP ++ +RI T +P +A A L L F+
Sbjct: 72 AHPNVPELFIRIQTDGSITPREALVGACKQLVAMYGQLGREFQ 114
>gi|402468386|gb|EJW03550.1| hypothetical protein EDEG_02134 [Edhazardia aedis USNM 41457]
Length = 161
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
+K++ RD N I E HT+GNIL +L +D +FA YK+PHPL+ K++VR+
Sbjct: 60 RKLNVIRDQTASNTVELEIHGETHTLGNILADRLLQDTRCVFAAYKVPHPLEEKVMVRVT 119
Query: 77 TTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ M+ N A+ L E++ K FE
Sbjct: 120 SAKNCDVMELINDALMSLSSEIEDAKVQFE 149
>gi|84996827|ref|XP_953135.1| RNA polymerases I and III subunit (RPC19 homologue) [Theileria
annulata strain Ankara]
gi|65304131|emb|CAI76510.1| RNA polymerases I and III subunit (RPC19 homologue), putative
[Theileria annulata]
Length = 90
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F IE E+HT+GN LR L ++V+FAGY +PHP++ ++ +RI TT Q + ++ + +
Sbjct: 12 TFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNIRIQTTGQPA-VEVFLDCL 70
Query: 92 NDLDKELDTLKSAFE 106
+D+ K D L+ FE
Sbjct: 71 DDMVKICDILREKFE 85
>gi|320582021|gb|EFW96240.1| RNA polymerase II core subunit [Ogataea parapolymorpha DL-1]
Length = 107
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++P+G K E +HT+GN+L+ +L D VLF
Sbjct: 1 MNAPDRFELFILPDGVPKYVLE----------------DHTLGNLLKQELANDPQVLFVA 44
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HPL ++R+ T P A A L +L L F+
Sbjct: 45 YKVEHPLFANFVMRLQTEEGYKPRIALKNACTRLISKLGILNDKFK 90
>gi|330040637|ref|XP_003239979.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
gi|327206905|gb|AEA39081.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
Length = 101
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%)
Query: 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV 73
+ T+K+ + +D +N SF I+ E+HTIG++++ QL + +V+F+GYK HPL+ I +
Sbjct: 7 DKTRKIEFYKDKDNVNYGSFRIKNEDHTIGSLIQKQLLKHPDVIFSGYKKFHPLEKYIFL 66
Query: 74 RIHTTSQSSPMQAYNQAINDL 94
+I T +P+Q + + DL
Sbjct: 67 KIITNGHKTPIQVLDSVLKDL 87
>gi|71028926|ref|XP_764106.1| RNA polymerase small subunit [Theileria parva strain Muguga]
gi|68351060|gb|EAN31823.1| RNA polymerase small subunit, putative [Theileria parva]
Length = 92
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F IE E+HT+GN LR L ++V+FAGY +PHP++ ++ VRI TT Q + ++ + +
Sbjct: 12 TFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTGQPA-VEVFLDCL 70
Query: 92 NDLDKELDTLKSAFE 106
+D+ K D L FE
Sbjct: 71 DDMVKICDILTEKFE 85
>gi|146090865|ref|XP_001466380.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
gi|134070742|emb|CAM69097.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
Length = 134
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G +K+ + + N++ F +E+E+HT+ N+LRM+LH V AGY++PHP ++ + +R
Sbjct: 24 GDRKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELR 83
Query: 75 IHTTSQSS------PMQAYNQAINDLDKELDTLK 102
+ T S + P +A AIN K+L+ +
Sbjct: 84 VQTASNGTDAPVPAPKKALQDAINGCLKDLEVFE 117
>gi|253744474|gb|EET00682.1| RNA polymerase II subunit Rpb11 [Giardia intestinalis ATCC 50581]
Length = 131
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDRY+ V + ++ NA F I +++TIG+ILR +L V FAG
Sbjct: 3 NVPDRYKTLVPDRRSAELLEVYKIGAANALEFQIPYQDYTIGHILRKELLAMPQVTFAGM 62
Query: 62 KLPHPLQYKIIVRIHT--------TSQSSPMQAYNQAINDLDKELDTLKSAF 105
K PHPL+ KI++R+ T T Q++P + A+ + + ++ LK F
Sbjct: 63 KTPHPLESKIVIRLQTNASAFLSDTIQATPENCFQSALTKVTESMELLKKTF 114
>gi|342878460|gb|EGU79797.1| hypothetical protein FOXB_09656 [Fusarium oxysporum Fo5176]
Length = 136
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 5 DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
D +E F++ EG KK+ + + + N + F + +E+HT+GN+L L NV AGYK+
Sbjct: 14 DPFELFLLGEGEKKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVYMAGYKIA 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
HP ++ +R+ T +P + L K+L+ L F
Sbjct: 74 HPNVPELFIRVQTDGTITPRDVFTSVCEKLIKQLEMLHQEF 114
>gi|308163296|gb|EFO65646.1| RNA polymerase II subunit Rpb11 [Giardia lamblia P15]
Length = 131
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDRY+ + + ++ NA F I +++TIG+ILR +L V FAG
Sbjct: 3 NVPDRYKTLIPDRRSAELLEVYKIGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGM 62
Query: 62 KLPHPLQYKIIVRIHTTS--------QSSPMQAYNQAINDLDKELDTLKSAF 105
K PHPL+ KI++R+ T S Q++P + A+ + + ++ +K F
Sbjct: 63 KTPHPLESKIVIRLQTNSSGFLSDTIQATPENCFQSALTKITESMELIKKTF 114
>gi|159116857|ref|XP_001708649.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
gi|21842229|gb|AAM77741.1|AF510649_1 RNA polymerase II subunit Rpb11 [Giardia intestinalis]
gi|157436762|gb|EDO80975.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
Length = 131
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N PDRY+ + + ++ NA F I +++TIG+ILR +L V FAG
Sbjct: 3 NVPDRYKTLIPDRRSAELLEVYKVGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGM 62
Query: 62 KLPHPLQYKIIVRIHT--------TSQSSPMQAYNQAINDLDKELDTLKSAF 105
K PHPL+ KI++R+ T T Q++P + A+ + + ++ +K F
Sbjct: 63 KTPHPLESKIVIRLQTNPSGFLSDTIQATPENCFQSALTKITESMELIKKTF 114
>gi|340914788|gb|EGS18129.1| hypothetical protein CTHT_0061440 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 146
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N +E F++ EG KK++ + T + N + F I +E+HTIGN+L L + +V+ AGY
Sbjct: 11 NLQTGFELFLLAEGEKKITEKVVTGMANTSDFIILKEDHTIGNLLSEHLKQAPHVMMAGY 70
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
K+ HP +++VR+ T +P +A L L F+
Sbjct: 71 KIGHPNVPEVLVRVQTDGTITPREALVNVCKQLVAAYGQLGREFQ 115
>gi|68071445|ref|XP_677636.1| RNA polymerase small subunit [Plasmodium berghei strain ANKA]
gi|56497829|emb|CAH98380.1| RNA polymerase small subunit, putative [Plasmodium berghei]
Length = 96
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
SY ++ K I A+F E E+HT+GN LR L + E + FAGY +PHP Q +I +RI TT
Sbjct: 5 SYFQNLKTITHATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTG 64
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFEFL 108
+ AIN L LD L + L
Sbjct: 65 KP--------AINILKDSLDDLSNICTIL 85
>gi|336274887|ref|XP_003352197.1| hypothetical protein SMAC_02632 [Sordaria macrospora k-hell]
Length = 140
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
P+R+E F++ +G KK+ + T + N + F I +E+HT+ N+L L + +VL AGYK+
Sbjct: 13 PNRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKI 72
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
HP ++++RI T +P +A A L L F+
Sbjct: 73 AHPNVPEVMIRIQTDGSITPREALVGACKQLVAMYGQLGREFQ 115
>gi|221060743|ref|XP_002261941.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|193811091|emb|CAQ41819.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 126
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G KKVS E K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENIDLLVLPPGEKKVSCEISEKG-DCNIFTIKLEDHTIGNLIKQALCQDPQVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ PHPLQ I + I + ++ + +N L ++ L+ F+
Sbjct: 67 RQPHPLQNTIEITIKPKGYAG-VKLLSDNVNSLLSDVSQLRETFK 110
>gi|156084318|ref|XP_001609642.1| RNA polymerase small subunit protein [Babesia bovis T2Bo]
gi|154796894|gb|EDO06074.1| RNA polymerase small subunit protein, putative [Babesia bovis]
Length = 96
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F+IE E+HT+GN +R L E+V FAGY +PHP+Q ++ +RI TT + + ++ + + +
Sbjct: 12 TFSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTGKPA-VKIFVECL 70
Query: 92 NDLDKELDTLKSAF 105
+DL + + L AF
Sbjct: 71 DDLVEVCNVLTKAF 84
>gi|366995461|ref|XP_003677494.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
gi|342303363|emb|CCC71142.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
Length = 150
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
PDR + ++PEG + ASF I E+HT+GN LR + ++ NV F GY +
Sbjct: 50 PDREKVKILPEGASEDG--------TCASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSI 101
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PHP + + VRI T + ++A+ + + DL D ++ F
Sbjct: 102 PHPSENFLNVRIQTYGDITAVEAFQKGLQDLMDLCDVVEDKF 143
>gi|398017622|ref|XP_003861998.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
gi|401424491|ref|XP_003876731.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492974|emb|CBZ28256.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500226|emb|CBZ35303.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
Length = 134
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G +K+ + + N++ F +E+E+HT+ N+LRM+LH V AGY++PHP ++ + +R
Sbjct: 24 GDRKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELR 83
Query: 75 IHTTSQS------SPMQAYNQAINDLDKELDTLK 102
+ T S +P +A AI+ K+L+ +
Sbjct: 84 VQTASNGTDAPVPAPKKALQDAIDGCLKDLEVFE 117
>gi|389593419|ref|XP_003721963.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
gi|321438465|emb|CBZ12222.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
Length = 134
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G +K+ + + N++ F +E+E+HT+ N+LRM+LH V AGY++PHP ++ + +R
Sbjct: 24 GDRKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELR 83
Query: 75 IHTTSQS--SPMQAYNQAIND 93
+ T S +P+ A +A+ D
Sbjct: 84 VQTASNGTDAPVPAPKKALQD 104
>gi|70949116|ref|XP_743999.1| RNA polymerase small subunit [Plasmodium chabaudi chabaudi]
gi|56523760|emb|CAH77311.1| RNA polymerase small subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 96
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+Y ++ K I A+F E E+HT+GN LR L + E + FAGY +PHP Q +I +RI TT
Sbjct: 5 AYFQNLKTITHATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTG 64
Query: 80 QSSPMQAYNQAINDLDKELDTLKS 103
+ AIN L LD L +
Sbjct: 65 EP--------AINILKDSLDDLSN 80
>gi|124808476|ref|XP_001348323.1| RNA polymerase small subunit, putative [Plasmodium falciparum 3D7]
gi|23497215|gb|AAN36762.1|AE014818_27 RNA polymerase small subunit, putative [Plasmodium falciparum 3D7]
Length = 96
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 21 YERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
Y + K + A+F E E+HT+GN LR L + E V FAGY +PHP Q +I VRI TT +
Sbjct: 6 YYENLKNLTHATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTTGK 65
Query: 81 SSPMQAYNQAINDLDKELDTLKSAF 105
+ + ++++DL D + + F
Sbjct: 66 PA-IDILKESLDDLGNMCDIMLNKF 89
>gi|154339938|ref|XP_001565926.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063244|emb|CAM45446.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 134
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G +K+ + + N++ F +E+E+HT+ N+LRM+LH V AGY++PHP ++ + +R
Sbjct: 24 GDRKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELR 83
Query: 75 IHTTSQS--SPMQAYNQAIND 93
+ T S +P+ A +A+ D
Sbjct: 84 VQTGSNGTDTPIPAPKKALQD 104
>gi|124512838|ref|XP_001349775.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|74843039|sp|Q8IER7.1|RPB11_PLAF7 RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|23615192|emb|CAD52182.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+ G KKV+ K + F I+ E+HTIGN++++QL +D VLFA Y
Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDKG-DCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + +N++ ++ TLK F
Sbjct: 67 RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENF 109
>gi|408388350|gb|EKJ68036.1| hypothetical protein FPSE_11847 [Fusarium pseudograminearum CS3096]
Length = 136
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%)
Query: 5 DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
D +E F++ EG KK+ + + + N + F + +E+HT+GN+L L NV AGYK+
Sbjct: 14 DPFELFLLGEGEKKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIA 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
HP ++ +R+ T +P + L +L+ L F
Sbjct: 74 HPNVPELFIRVQTDGTITPRDVFTSVCEKLINQLEMLHQEF 114
>gi|221060390|ref|XP_002260840.1| RNA polymerase small subunit [Plasmodium knowlesi strain H]
gi|193810914|emb|CAQ42812.1| RNA polymerase small subunit, putative [Plasmodium knowlesi strain
H]
Length = 94
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+Y + + A+F E E+HT+GN LR L + E V FAGY +PHP Q +I +RI TT
Sbjct: 5 NYYEHMRTLTHATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTG 64
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ + + A++DL D + + F+
Sbjct: 65 EPA-VNILKDALDDLSNICDIMLNKFD 90
>gi|213402453|ref|XP_002171999.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
gi|212000046|gb|EEB05706.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 7 YERFVVPEGTKKVS-YERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
Y + +G +KV+ + + +F I++E+HT+GN LR + ++ +V F GY +PH
Sbjct: 10 YGSITLDQGLEKVTILAGHSADYTSVTFQIQKEDHTLGNALRYMIMKNPDVEFCGYSIPH 69
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
P + K+ +RI T S ++ + A + ++DL D + +F
Sbjct: 70 PSEAKMNLRIQTKSTTTAIDALKKGLDDLMDLCDVVTESF 109
>gi|320591999|gb|EFX04438.1| DNA-directed RNA polymerase 2 subunit [Grosmannia clavigera kw1407]
Length = 168
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 5 DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
D +E F++ +G KK++ T + N + F + +E+HT+GN+L L +L AGYK+
Sbjct: 45 DGFELFILGDGEKKITETPFTGMANTSDFLMLKEDHTLGNLLAEHLKMHPKILMAGYKVA 104
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
HP ++++R+ T +P + + L L L F
Sbjct: 105 HPNVAEVLLRVQTDGTVTPKEVLVEVCKQLVATLGHLSREF 145
>gi|302911227|ref|XP_003050446.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
gi|256731383|gb|EEU44733.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
Length = 136
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
+E F++ +G KK+ + + + N + F +++E+HT+GN+L L NV AGYK+ HP
Sbjct: 16 FELFILDDGEKKIEEKVFSGMSNTSDFVLKKEDHTLGNLLSEHLKMHPNVYMAGYKIAHP 75
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
++ +R+ T +P + L +L+ L F
Sbjct: 76 NVPELFIRVQTDGTITPRDVFTSVCEKLINQLEMLHQEF 114
>gi|398393690|ref|XP_003850304.1| hypothetical protein MYCGRDRAFT_45952, partial [Zymoseptoria
tritici IPO323]
gi|339470182|gb|EGP85280.1| hypothetical protein MYCGRDRAFT_45952 [Zymoseptoria tritici IPO323]
Length = 101
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E+E+HT+GN LR + ++ +V F GY +PHP + + +RI T + M+ +
Sbjct: 8 AASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVNVMEVLRK 67
Query: 90 AINDLDKELDTLKSAF 105
++DL D ++ F
Sbjct: 68 GLDDLSDMCDAVEEKF 83
>gi|226470082|emb|CAX70322.1| hypotherical protein [Schistosoma japonicum]
Length = 66
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 45 ILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSA 104
++ QL +D VLFAGYK PHPL++KI++R+HT ++P+ + A+ DL E+ ++
Sbjct: 1 MITCQLLKDPRVLFAGYKAPHPLEHKIVIRVHTAHPATPVDVFVSALKDLISEISNIEEQ 60
Query: 105 F 105
F
Sbjct: 61 F 61
>gi|440465860|gb|ELQ35160.1| hypothetical protein OOU_Y34scaffold00725g18 [Magnaporthe oryzae
Y34]
gi|440486473|gb|ELQ66334.1| hypothetical protein OOW_P131scaffold00400g21 [Magnaporthe oryzae
P131]
Length = 170
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
+E F++ G +K++ +T + N + FT ++E+HT+GN+L L + NVL AGYK+ HP
Sbjct: 47 FELFLLEPGEEKLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHP 106
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ +RI T + +P A + L +++ F
Sbjct: 107 NVPEFFLRIQTDGKVTPKACLLDACRTILHSLGQIRTEF 145
>gi|46124881|ref|XP_386994.1| hypothetical protein FG06818.1 [Gibberella zeae PH-1]
Length = 239
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N + +E F++ EG KK+ + + + N + F + +E+HT+GN+L L NV AGY
Sbjct: 114 NILNSFELFLLGEGEKKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGY 173
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+ HP ++ +R+ T +P + L +L+ L F
Sbjct: 174 KIAHPNVPELFIRVQTDGTITPRDVFTSVCEKLINQLEMLHQEF 217
>gi|425773962|gb|EKV12287.1| hypothetical protein PDIG_46120 [Penicillium digitatum PHI26]
gi|425782350|gb|EKV20265.1| hypothetical protein PDIP_18050 [Penicillium digitatum Pd1]
Length = 138
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 5 DRYERFVVPEGTKKVSYERDTKII-----NAASFTIEREEHTIGNILRMQLHRDENVLFA 59
D + +P+ + ER ++ AASF E E HT+GN LR + ++ V F
Sbjct: 16 DAEQAIELPQSNDPILEERQIVVLPGATETAASFQFEGEGHTMGNALRYAIMKNPAVEFC 75
Query: 60 GYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
GY +PHP K+ VRI T ++ ++A + NDL D + F
Sbjct: 76 GYTIPHPSDPKMNVRIQTNDTTTALEALEKGFNDLMDLCDVVTEKF 121
>gi|294654812|ref|XP_456893.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
gi|199429167|emb|CAG84870.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
Length = 129
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 40 AASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 99
Query: 90 AINDLDKELDTLKSAF 105
+++L + T++ F
Sbjct: 100 GLDNLSELCSTIEEKF 115
>gi|320580545|gb|EFW94767.1| DNA-directed RNA polymerase subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 125
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A ++
Sbjct: 36 AASFQISDEDHTLGNALRYMIMKNPEVEFCGYSIPHPAESKMNIRIQTYGGMSAVEALHK 95
Query: 90 AINDL 94
++DL
Sbjct: 96 GLDDL 100
>gi|255945795|ref|XP_002563665.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588400|emb|CAP86508.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 137
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 8 ERFVVPEGTKKVSYERDTKII-----NAASFTIEREEHTIGNILRMQLHRDENVLFAGYK 62
E+ V P+ + ER ++ AASF E E HT+GN LR + ++ V F GY
Sbjct: 18 EQAVEPQSNDPILEERQIVVLPGATETAASFQFEGEGHTMGNALRYAIMKNPAVEFCGYT 77
Query: 63 LPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+PHP K+ VRI T ++ ++A + +DL D + F
Sbjct: 78 IPHPSDPKMNVRIQTNDTTTALEALEKGFDDLMDLCDVVTEKF 120
>gi|453083599|gb|EMF11644.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Mycosphaerella populorum SO2202]
Length = 134
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E+E+HT+GN+LR + ++ +V F GY +PHP + + +RI T S + +
Sbjct: 40 AASFAFEKEDHTLGNVLRYLISKNPDVEFVGYSIPHPSEAFMNLRIQTWDNVSVFEVLRK 99
Query: 90 AINDLDKELDTLKSAF 105
+ DL+ D ++ F
Sbjct: 100 GLQDLEDMCDVIEEKF 115
>gi|392562075|gb|EIW55256.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 111
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HTIGN LR L ++E V F GY +PHP + I +RI S + A
Sbjct: 18 LSAATYQIHDESHTIGNALRWMLMKNEKVEFCGYSVPHPSENHINMRIQMYDGLSSLTAL 77
Query: 88 NQAINDLDKELDTLKSAF 105
QA+ DLD+ T+ +
Sbjct: 78 IQALKDLDELCVTIDGEY 95
>gi|156102216|ref|XP_001616801.1| RNA polymerase small subunit [Plasmodium vivax Sal-1]
gi|148805675|gb|EDL47074.1| RNA polymerase small subunit, putative [Plasmodium vivax]
Length = 97
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+Y + + A+F E E+HT+GN LR L + E V FAGY +PHP Q +I +RI TT
Sbjct: 5 NYYEHMRTLTHATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTG 64
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ + + +++DL D + + F+
Sbjct: 65 EPA-INILKDSLDDLSNICDIMLNKFD 90
>gi|145487466|ref|XP_001429738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396832|emb|CAK62340.1| unnamed protein product [Paramecium tetraurelia]
Length = 129
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+V E + K+ NA + E+HTIGN+ RM L + + V F+GY+ HPLQ+ I +++ T
Sbjct: 26 RVILEDEKKMNNACCVKLYLEDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKVQT 85
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
P A + DL E L+ +
Sbjct: 86 NGSIKPYDAIQKTFQDLSDEFKNLEEEW 113
>gi|395324917|gb|EJF57348.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 111
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HTIGN LR L ++ V F GY +PHP + I +RI S + A
Sbjct: 18 LSAATYQIHDESHTIGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQMYDGLSSLAAL 77
Query: 88 NQAINDLDKELDTLKSAFEF 107
QA+ DLD T+ A+ +
Sbjct: 78 LQALKDLDDLCVTIDDAYTY 97
>gi|389585987|dbj|GAB68716.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 126
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+ G KKVS E K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENIDLLVLAPGEKKVSCEISEKG-DCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ PHPLQ I + I + ++ + +N L ++ L+ F+
Sbjct: 67 RQPHPLQNTIEITIKPKGYAG-VKLLSDNVNSLLSDVSQLRETFK 110
>gi|156102573|ref|XP_001616979.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805853|gb|EDL47252.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Plasmodium vivax]
Length = 126
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+ G KKVS E K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENIDLLVLAPGEKKVSCEISEKG-DCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ PHPLQ I + I + ++ + +N L ++ L+ F+
Sbjct: 67 RQPHPLQNTIEITIKPKGYAG-VKLLSDNVNSLLSDVSQLRETFK 110
>gi|443895240|dbj|GAC72586.1| DNA-directed RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 164
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
YE D +A +F ++ E+HT+GN LR + +D V F GY PHP + KI +R+
Sbjct: 26 GYEPD---FSAVTFCLKEEDHTLGNSLRYMIMKDPRVEFCGYSNPHPSENKIHLRVQMYD 82
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
++S + A AI +LD+ + A+E
Sbjct: 83 RASALDALRDAIENLDQLFAAIGEAYE 109
>gi|384248587|gb|EIE22071.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 105
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F +E E+HT+ N LR L+R+ +V F GY +PHP + + +RI TT + S ++A Q
Sbjct: 10 GVTFALEDEDHTLANSLRHLLNRNPHVSFVGYSIPHPSEKVVNLRIQTTGEISAVEALRQ 69
Query: 90 AINDLDKELDTLKSAFE 106
A L + + +K+ F+
Sbjct: 70 ACQSLKQVCEHIKATFQ 86
>gi|389585811|dbj|GAB68541.1| RNA polymerase small subunit [Plasmodium cynomolgi strain B]
Length = 97
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+Y + + A+F E E+HT+GN LR L + E V FAGY +PHP Q +I +RI TT
Sbjct: 5 NYYEHMRTLTHATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTG 64
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ + + ++ DL D + + F+
Sbjct: 65 EPA-INILKDSLEDLSNICDIMLNKFD 90
>gi|82540957|ref|XP_724755.1| RNA polymerase L [Plasmodium yoelii yoelii 17XNL]
gi|23479513|gb|EAA16320.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii
yoelii]
Length = 92
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 21 YERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
Y ++ K I A+F E E+HT+GN LR L + E + FAGY +PHP Q +I +RI TT
Sbjct: 6 YSQNLKTITHATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTG 64
>gi|403217497|emb|CCK71991.1| hypothetical protein KNAG_0I02060 [Kazachstania naganishii CBS
8797]
Length = 134
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 5 DRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
DR + ++PE T T+ ASF I E+HT+GN LR + ++ V F GY +P
Sbjct: 35 DREKVKILPEAT--------TEDGTCASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIP 86
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
HP + + VRI T + + + A+ + + DL D ++ F
Sbjct: 87 HPSENWLNVRIQTYGKITAVDAFKKGLGDLMDMCDVVEDVF 127
>gi|50554135|ref|XP_504476.1| YALI0E27676p [Yarrowia lipolytica]
gi|49650345|emb|CAG80079.1| YALI0E27676p [Yarrowia lipolytica CLIB122]
Length = 140
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
A SF E+HTIGN L+ + ++ V F GY +PHP + K+ +RI T + ++A +
Sbjct: 54 ACSFQFTEEDHTIGNALQYIIMKNPEVEFCGYSIPHPSEAKLNIRIQTYGDITAIEALQK 113
Query: 90 AINDLDKELDTLKSAF 105
++DL + D +K+ F
Sbjct: 114 GLDDLIQACDVVKNKF 129
>gi|426356122|ref|XP_004045440.1| PREDICTED: uncharacterized protein LOC101147128 [Gorilla gorilla
gorilla]
Length = 403
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 15/112 (13%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG K + ++ A+ + H + ++ ++ R + L AG
Sbjct: 248 MNAPPAFESFLLFEGEKNFLF-----CLSPATSIL----HPLQSVSGLRKSRSGSSLPAG 298
Query: 61 Y------KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ K+PHPL++KII+R+ TT SP +A+ AI +L EL L+ F+
Sbjct: 299 WSAXXXXKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECFQ 350
>gi|126134273|ref|XP_001383661.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
gi|126095810|gb|ABN65632.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
Length = 119
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T + ++A +Q
Sbjct: 30 AASFQILEEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITAVEALHQ 89
Query: 90 AINDLDKELDTLKSAFE 106
+++L + + FE
Sbjct: 90 GLDNLAELCTVIGDKFE 106
>gi|448509278|ref|XP_003866104.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
gi|380350442|emb|CCG20664.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
Length = 125
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
++ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +
Sbjct: 35 SSASFQILEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALH 94
Query: 89 QAINDLDKELDTLKSAFE 106
Q +++L + ++ FE
Sbjct: 95 QGLDNLSELCGVVEEKFE 112
>gi|212546343|ref|XP_002153325.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064845|gb|EEA18940.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 135
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A +
Sbjct: 43 AASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQTYDDTTAIEALEK 102
Query: 90 AINDLDKELDTLKSAF 105
+NDL D + F
Sbjct: 103 GLNDLMDLCDVVSDKF 118
>gi|328768812|gb|EGF78857.1| hypothetical protein BATDEDRAFT_12522 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+ +A+F I E+HT+GN LR + ++ V F GY +PHP +Y+I +RI T + + A
Sbjct: 2 LGSATFCISNEDHTLGNALRYIIMKNPAVSFCGYSVPHPSEYQINLRIQTDGSITAVDAL 61
Query: 88 NQAINDLDKELDTLKSAFE 106
++ ++DL +K +F+
Sbjct: 62 HKGLDDLVDMTTHVKESFK 80
>gi|340504627|gb|EGR31054.1| DNA-directed polymerase II polypeptide J, putative
[Ichthyophthirius multifiliis]
Length = 125
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ + K+ N+ + + E+HTIGN++RM L + + V FAGY++PHPL+ K+ +++ T
Sbjct: 27 RIQITENEKMKNSKTIIMNLEDHTIGNLIRMYLLKSKEVKFAGYRMPHPLETKVEIKVQT 86
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
++ N ++ L K++D ++ FE
Sbjct: 87 VKDNTCEILIN-TLDGLIKDIDIIQYDFE 114
>gi|388851779|emb|CCF54585.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Ustilago hordei]
Length = 164
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
YE D +A +F ++ E+HT+GN LR + +D V F GY PHP + KI +RI
Sbjct: 26 GYEPD---FSAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYD 82
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
++S ++A AI +LD+ + A++
Sbjct: 83 KASALEALRDAIENLDQLFAAIGEAYD 109
>gi|330932673|ref|XP_003303866.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
gi|311319853|gb|EFQ88038.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
Length = 126
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E+HT+GN LR +H++ +V F GY +PHP + K+ +RI T +S +
Sbjct: 38 AASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEK 97
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 98 GLEDLMAMCDVVEQKF 113
>gi|354544993|emb|CCE41718.1| hypothetical protein CPAR2_802680 [Candida parapsilosis]
Length = 125
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
++ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +
Sbjct: 35 SSASFQILDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALH 94
Query: 89 QAINDLDKELDTLKSAFE 106
Q +++L + ++ FE
Sbjct: 95 QGLDNLSELCGVVEEKFE 112
>gi|323303408|gb|EGA57204.1| Rpc19p [Saccharomyces cerevisiae FostersB]
Length = 111
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 29 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 88
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 89 GLKDLMDLCDVVESKF 104
>gi|323331945|gb|EGA73357.1| Rpc19p [Saccharomyces cerevisiae AWRI796]
Length = 111
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 29 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 88
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 89 GLKDLMDLCDVVESKF 104
>gi|412986016|emb|CCO17216.1| predicted protein [Bathycoccus prasinos]
Length = 133
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
A+++++ E+HT+GN LR QL+++ V AGY +PHP++ K+ VR+ T + A +A
Sbjct: 36 ATYSLQNEDHTLGNCLRYQLNKNPGVALAGYSVPHPMERKVNVRVQTIQPLTADGAMREA 95
Query: 91 INDLDKELDTLKSAFE 106
+ D+ + + FE
Sbjct: 96 LLDVVSICEHVTETFE 111
>gi|323307474|gb|EGA60747.1| Rpc19p [Saccharomyces cerevisiae FostersO]
Length = 111
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 29 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 88
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 89 GLKDLMDLCDVVESKF 104
>gi|149246468|ref|XP_001527691.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146447645|gb|EDK42033.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 135
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ VRI T S ++A +Q
Sbjct: 46 SASFQILDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNVRIQTYGNISAVEALHQ 105
Query: 90 AINDLDKELDTL 101
+++L + D +
Sbjct: 106 GLDNLSELCDVV 117
>gi|302815190|ref|XP_002989277.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
gi|300143020|gb|EFJ09715.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
Length = 101
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+++F I E+HT GN +R L+ D V F GY +PHP ++ VR+ TT +S+ +
Sbjct: 13 SSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTGESA-KSVFKD 71
Query: 90 AINDLDKELDTLKSAFE 106
A+ DL D + SAF+
Sbjct: 72 ALRDLVLICDHVCSAFD 88
>gi|378730189|gb|EHY56648.1| DNA-directed RNA polymerase III subunit C19 [Exophiala dermatitidis
NIH/UT8656]
Length = 129
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQA 86
+AASF IE+E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T ++++ + A
Sbjct: 39 HAASFQIEKEDHTLGNALRYFVTKNPDVEFCGYTIPHPSETKMHLRIQTWEDTKTTAVDA 98
Query: 87 YNQAINDLDKELDTLKSAF 105
+ + D+ + D + F
Sbjct: 99 LRKGLEDMMEACDVVSEKF 117
>gi|237831979|ref|XP_002365287.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|211962951|gb|EEA98146.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|221486858|gb|EEE25104.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221506554|gb|EEE32171.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 129
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 21 YERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
+E++ + +FT+ E+HT+GN +R L R V FAGY +PHP Q ++ +R+ TT +
Sbjct: 27 HEQEACKASQLTFTLTGEDHTLGNTIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGE 86
Query: 81 SSPMQAYNQAINDLDKELDTLKSAFE 106
S+ MQ ++ +DL D L + ++
Sbjct: 87 SA-MQLLRESFDDLASICDHLDTLYD 111
>gi|344304121|gb|EGW34370.1| hypothetical protein SPAPADRAFT_59793 [Spathaspora passalidarum
NRRL Y-27907]
Length = 127
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 38 AASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 97
Query: 90 AINDLDKELDTLKSAF 105
+++L + ++ F
Sbjct: 98 GLDNLSELCTVIEEKF 113
>gi|315045149|ref|XP_003171950.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
gi|311344293|gb|EFR03496.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
Length = 157
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T + A +
Sbjct: 68 AASFQFEAEDHTLGNALRYMIMKNPDVEFCGYTMPHPSEAKLNLRIQTYDSTDVFTALEK 127
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 128 GLDDLMDLCDVVTEKF 143
>gi|303286291|ref|XP_003062435.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455952|gb|EEH53254.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 109
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+FT++ E+HT+GN +R L+++ V AGY +PHP++ + VR+ TT + + A A+
Sbjct: 7 TFTLKDEDHTMGNAIRYMLNKNPQVALAGYSVPHPMERSVNVRVQTTGEVTATAAMRDAL 66
Query: 92 NDLDKELDTLKSAFEF 107
D+ D + F+
Sbjct: 67 LDIISVCDHVHDTFDL 82
>gi|451854249|gb|EMD67542.1| hypothetical protein COCSADRAFT_188250 [Cochliobolus sativus
ND90Pr]
gi|452000164|gb|EMD92626.1| hypothetical protein COCHEDRAFT_1174793 [Cochliobolus
heterostrophus C5]
Length = 131
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E+HT+GN LR +H++ +V F GY +PHP + K+ +RI T S +
Sbjct: 43 AASFQFDGEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGVSVYTVLEK 102
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 103 GLEDLMAMCDVVEKKF 118
>gi|302660638|ref|XP_003021996.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
gi|291185920|gb|EFE41378.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
Length = 147
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T ++ +
Sbjct: 58 AASFQFEDEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEK 117
Query: 90 AINDLDKELDTLKSAF 105
+NDL D + F
Sbjct: 118 GLNDLMDLCDVVTEKF 133
>gi|303322216|ref|XP_003071101.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110800|gb|EER28956.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 145
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T + ++ + ++
Sbjct: 57 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVLDK 116
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 117 GLSDLIDLCDVVTETF 132
>gi|327295865|ref|XP_003232627.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464938|gb|EGD90391.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 147
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T ++ +
Sbjct: 58 AASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEK 117
Query: 90 AINDLDKELDTLKSAFEF 107
++DL D + F F
Sbjct: 118 GLSDLMDLCDVVTEKFTF 135
>gi|343427064|emb|CBQ70592.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Sporisorium reilianum SRZ2]
Length = 164
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 1 MNAPDRYERFVVPEGTKKVS--------YERDTKIINAASFTIEREEHTIGNILRMQLHR 52
M+ P+ E V+ EG +S YE D +A +F ++ E+HT+GN LR + +
Sbjct: 1 MSNPNLAE--VMGEGPASISDKLTLLPGYEPD---FSAVTFCLKEEDHTLGNSLRYIIMK 55
Query: 53 DENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
D V F GY PHP + KI +RI +S + A AI +LD+ + A++
Sbjct: 56 DPRVEFCGYSNPHPSENKIHLRIQMYDHASALDALRDAIENLDQLFAAIGEAYD 109
>gi|320034951|gb|EFW16893.1| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
posadasii str. Silveira]
gi|392861857|gb|EAS37553.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 145
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T + ++ + ++
Sbjct: 57 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVLDK 116
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 117 GLSDLIDLCDVVTETF 132
>gi|6324215|ref|NP_014286.1| Rpc19p [Saccharomyces cerevisiae S288c]
gi|133371|sp|P28000.1|RPAC2_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 16 kDa polypeptide; AltName: Full=RPA19
gi|172472|gb|AAA34998.1| AC19 RNA polymerase subunit [Saccharomyces cerevisiae]
gi|1183960|emb|CAA93394.1| Subunit of RNA polymerase I and III [Saccharomyces cerevisiae]
gi|1302037|emb|CAA95994.1| RPC19 [Saccharomyces cerevisiae]
gi|45269892|gb|AAS56327.1| YNL113W [Saccharomyces cerevisiae]
gi|151944423|gb|EDN62701.1| AC19 [Saccharomyces cerevisiae YJM789]
gi|190409101|gb|EDV12366.1| RNA polymerases I subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273818|gb|EEU08740.1| Rpc19p [Saccharomyces cerevisiae JAY291]
gi|259149248|emb|CAY82490.1| Rpc19p [Saccharomyces cerevisiae EC1118]
gi|285814540|tpg|DAA10434.1| TPA: Rpc19p [Saccharomyces cerevisiae S288c]
gi|323335952|gb|EGA77230.1| Rpc19p [Saccharomyces cerevisiae Vin13]
gi|323346881|gb|EGA81160.1| Rpc19p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352551|gb|EGA85050.1| Rpc19p [Saccharomyces cerevisiae VL3]
gi|349580826|dbj|GAA25985.1| K7_Rpc19p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763575|gb|EHN05103.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296878|gb|EIW07979.1| Rpc19p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 142
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 120 GLKDLMDLCDVVESKF 135
>gi|406607619|emb|CCH41090.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 130
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T + ++A ++
Sbjct: 41 AASFQILDEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETKLNIRIQTYGDMTAVEALHK 100
Query: 90 AINDL 94
++DL
Sbjct: 101 GLDDL 105
>gi|70948405|ref|XP_743717.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|74976313|sp|Q4XS21.1|RPB11_PLACH RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56523351|emb|CAH80291.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + ++ + ++ TL+ F
Sbjct: 67 RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETF 109
>gi|401406776|ref|XP_003882837.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
gi|325117253|emb|CBZ52805.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
Length = 129
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+FT+ E+HT+GN +R L R V FAGY +PHP Q ++ +R+ TT +S+ MQ ++
Sbjct: 38 TFTLTGEDHTLGNAIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGESA-MQLLRESF 96
Query: 92 NDLDKELDTLKSAFE 106
+DL D L + ++
Sbjct: 97 DDLANICDHLDTLYD 111
>gi|190347624|gb|EDK39934.2| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AA+F I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 90 AINDLDKELDTLKSAF 105
+++L + +++ F
Sbjct: 94 GLDNLSELCTVIETKF 109
>gi|146414666|ref|XP_001483303.1| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AA+F I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 90 AINDLDKELDTLKSAF 105
+++L + +++ F
Sbjct: 94 GLDNLSELCTVIETKF 109
>gi|403360631|gb|EJY79996.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 114
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
+K Y D ++ + + TI+ E+H++GN++R QL + V F+GY+ PHPL+ + ++
Sbjct: 6 ANQKFIYTDDNRVRHQGTLTIKDEDHSLGNLVRQQLLHNPKVKFSGYRKPHPLEEYVEIK 65
Query: 75 IHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ TT + SP + A L ++ +L +
Sbjct: 66 VQTTGEVSPPDSIIMASEQLLSQMKSLSDSL 96
>gi|71005330|ref|XP_757331.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
gi|46096735|gb|EAK81968.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
Length = 164
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
YE D +A +F ++ E+HT+GN LR + +D V F GY PHP + KI +RI
Sbjct: 26 GYEPD---FSAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYD 82
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+S + A AI +LD+ + A++
Sbjct: 83 NASALDALRDAIENLDQLFAAIGEAYD 109
>gi|189205499|ref|XP_001939084.1| RNA polymerase II subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975177|gb|EDU41803.1| RNA polymerase II subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 183
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
M +R+E F++ EG +KV + +T++ N A FT +E+HT+GN+L +L ++ +LFA
Sbjct: 76 MGPANRFELFLLDEGQQKVEEKAETRVPNTAVFTFNKEDHTLGNLLSARLQKNPAILFAA 135
Query: 61 YK 62
YK
Sbjct: 136 YK 137
>gi|401623947|gb|EJS42026.1| rpc19p [Saccharomyces arboricola H-6]
Length = 142
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 60 SASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 120 GLQDLMDLCDVVESKF 135
>gi|238879719|gb|EEQ43357.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
albicans WO-1]
Length = 133
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 44 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 103
Query: 90 AINDLDKELDTLKSAFE 106
+++L + ++ F+
Sbjct: 104 GLDNLSELCGAIEDKFD 120
>gi|168025386|ref|XP_001765215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683534|gb|EDQ69943.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
A+F+I E+HT+GN LR L++D V F GY +PHP + +I VR+ TT + A
Sbjct: 12 ATFSISDEDHTLGNSLRFVLNKDPRVAFCGYSVPHPSETRINVRVQTTGVPA-RDVLKDA 70
Query: 91 INDL 94
+NDL
Sbjct: 71 LNDL 74
>gi|68490974|ref|XP_710709.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|68491001|ref|XP_710695.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431930|gb|EAK91447.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431945|gb|EAK91461.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
Length = 131
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 42 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 101
Query: 90 AINDLDKELDTLKSAFE 106
+++L + ++ F+
Sbjct: 102 GLDNLSELCGAIEDKFD 118
>gi|240276866|gb|EER40377.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
Length = 137
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 90 AINDLDKELDTLKSAF 105
++DL DT+ F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|154272529|ref|XP_001537117.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409104|gb|EDN04560.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 137
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 90 AINDLDKELDTLKSAF 105
++DL DT+ F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|225554760|gb|EEH03055.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Ajellomyces capsulatus G186AR]
Length = 137
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 90 AINDLDKELDTLKSAF 105
++DL DT+ F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|325095094|gb|EGC48404.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 137
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 90 AINDLDKELDTLKSAF 105
++DL DT+ F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|258569481|ref|XP_002543544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903814|gb|EEP78215.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 145
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E+E+HT+GN LR + ++ V F GY +PHP + ++ +RI T S ++ + ++
Sbjct: 57 AASFQFEKEDHTLGNALRYVIMKNPGVEFCGYTMPHPSEERMNLRIQTYSPANVFEVLDK 116
Query: 90 AINDLDKELDTLKSAF 105
+DL D + F
Sbjct: 117 GFSDLMDLCDVVLETF 132
>gi|255075357|ref|XP_002501353.1| predicted protein [Micromonas sp. RCC299]
gi|226516617|gb|ACO62611.1| predicted protein [Micromonas sp. RCC299]
Length = 100
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+FT++ E+HT+GN +R L+++ V AGY +PHP++ + VR+ TT + + A A+
Sbjct: 7 TFTLKDEDHTMGNAVRYMLNKNPQVSLAGYSVPHPMEKSVNVRVQTTGEVTATAAMRDAL 66
Query: 92 NDLDKELDTLKSAFE 106
D+ D + F+
Sbjct: 67 LDIISVCDHVHDTFD 81
>gi|241958198|ref|XP_002421818.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
gi|223645163|emb|CAX39762.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
Length = 130
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T S ++A +Q
Sbjct: 41 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 100
Query: 90 AINDLDKELDTLKSAFE 106
+++L + ++ F+
Sbjct: 101 GLDNLSELCSAIEDKFD 117
>gi|452982354|gb|EME82113.1| hypothetical protein MYCFIDRAFT_77593 [Pseudocercospora fijiensis
CIRAD86]
Length = 133
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E+E+HT+GN LR + ++ +V F GY +PHP + + +RI T S +
Sbjct: 40 AASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVSVFDVLRK 99
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 100 GLEDLADLCDAVEEKF 115
>gi|440795586|gb|ELR16706.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 129
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N + T+ E+HT+GN LR L ++ V F GY +PHP + K+ VRI T ++A
Sbjct: 28 NLITVTLSNEDHTLGNSLRWILMKNPEVDFCGYSVPHPSEPKMNVRIQTKDGKPSVEALR 87
Query: 89 QAINDL----DKELDTLKSAFE-FLDA 110
+ +NDL + L T +S F+ F+D+
Sbjct: 88 KGLNDLVSIAEYTLGTFQSEFQMFVDS 114
>gi|169601826|ref|XP_001794335.1| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
gi|160706019|gb|EAT88994.2| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
Length = 203
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTK--------------------IINAASFTIEREEHT 41
+A R+E F++ +G +K+ Y+ +T+ + N FT +E+HT
Sbjct: 55 DAECRFELFLLDDGQQKIEYKEETRKSTYHPALPSDTQANPTTLGVPNTGIFTFNKEDHT 114
Query: 42 IGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101
+GN++ +L + + F+ YK+PHPL +R+ T +P A + ++L+ L
Sbjct: 115 LGNLISQRLLKYPYITFSAYKVPHPLFATFELRVSTDGSITPKDAIIACCRQVVQDLEDL 174
Query: 102 KSAFE 106
K +F+
Sbjct: 175 KRSFQ 179
>gi|68072823|ref|XP_678325.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|74991219|sp|Q4YZZ7.1|RPB11_PLABA RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56498758|emb|CAH96395.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 126
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + ++ + ++ TL+ F
Sbjct: 67 RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETF 109
>gi|260948950|ref|XP_002618772.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
gi|238848644|gb|EEQ38108.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
Length = 154
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E+HT+GN LR + ++ V F GY +PHP + K+ +RI T + ++A +Q
Sbjct: 65 AASFQVLDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITALEALHQ 124
Query: 90 AINDLDKELDTLKSAF-EFLDA 110
+++L + ++ F E +DA
Sbjct: 125 GLDNLSELCTHVEETFTEKVDA 146
>gi|426195181|gb|EKV45111.1| hypothetical protein AGABI2DRAFT_186894 [Agaricus bisporus var.
bisporus H97]
Length = 112
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA+F I E HT+GN LR L ++ V F GY +PHP + I VRI S A
Sbjct: 19 LSAATFQIHDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENVINVRIQMYDNISSFDAL 78
Query: 88 NQAINDLDKELDTLKSAF 105
A+++LD ++++ A+
Sbjct: 79 ISALDNLDHLCESIEDAY 96
>gi|67540776|ref|XP_664162.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|40738708|gb|EAA57898.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|259480131|tpe|CBF70983.1| TPA: DNA-directed RNA polymerase I and III 14 KDA polypeptide
(AFU_orthologue; AFUA_6G04610) [Aspergillus nidulans
FGSC A4]
Length = 137
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 45 AASFQFEGEGHTLGNALRFAIMKNPEVEFCGYTIPHPSESKMNIRIQTYDSTTAVEA--- 101
Query: 90 AINDLDKELDTL 101
L+K LDTL
Sbjct: 102 ----LEKGLDTL 109
>gi|261190999|ref|XP_002621908.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239590952|gb|EEQ73533.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239613144|gb|EEQ90131.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327354788|gb|EGE83645.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 142
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ + +
Sbjct: 54 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTNVFEVLEK 113
Query: 90 AINDLDKELDTLKSAF 105
+DL DT+ F
Sbjct: 114 GFDDLMDLCDTVTETF 129
>gi|189190328|ref|XP_001931503.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973109|gb|EDU40608.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 126
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E+HT+GN LR +H++ +V F GY +PHP + K+ +RI T +S +
Sbjct: 38 AASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEK 97
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ +
Sbjct: 98 GLEDLMAMCDIVEQKY 113
>gi|254578786|ref|XP_002495379.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
gi|238938269|emb|CAR26446.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
Length = 130
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
+ PDR + ++P+ T + ASF I E+HT+GN LR + ++ +V F GY
Sbjct: 28 DEPDREKIKILPQATSEDG--------TCASFQIAEEDHTLGNALRYMIMKNPDVEFCGY 79
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+PHP + + +R+ T + + ++ + DL D ++ F
Sbjct: 80 SIPHPSENLLNIRVQTYGNVTAVDVLHKGLQDLMDLCDAVEDKF 123
>gi|385301731|gb|EIF45900.1| putative rna polymerase i and iii shared subunit rpc19 [Dekkera
bruxellensis AWRI1499]
Length = 144
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
A+F I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T + + + A ++
Sbjct: 56 AAFQIIDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKMNIRIQTYGEQTAVDALHKG 115
Query: 91 INDLDKELDTLKSAF 105
++DL K ++ F
Sbjct: 116 LDDLSKLCSFIEDTF 130
>gi|221487866|gb|EEE26098.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii GT1]
Length = 178
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G KV + DT+ +F E++TIG I+R L D V F G + PHPL+ KI +R
Sbjct: 22 GVHKVEWVPDTRFPLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELR 81
Query: 75 IHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
I T S SSP +++ L LK+ F+
Sbjct: 82 IQTVS-SSPFTLVLESLRKRKAGLSLLKARFK 112
>gi|392595387|gb|EIW84710.1| RBP11-like subunits of RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 114
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HT+GN LR L ++ V F GY +PHP + I VRI + S + A
Sbjct: 21 LSAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENHINVRIQMYDELSSLDAL 80
Query: 88 NQAINDLDKELDTLKSAFE 106
+A+++LD +T++ ++
Sbjct: 81 LEALSNLDDLCETVEQKYQ 99
>gi|225678511|gb|EEH16795.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 201
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
A SF +RE+HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +
Sbjct: 112 TAVSFQFDREDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTTAIAVLE 171
Query: 89 QAINDLDKELDTLKSAF 105
+ +DL + D + F
Sbjct: 172 KGFDDLMELCDVVTETF 188
>gi|388580060|gb|EIM20378.1| RBP11-like subunits of RNA polymerase [Wallemia sebi CBS 633.66]
Length = 135
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++ A+F + E+HTIGN LR L ++ NV F GY +PHP + K+ +RI S + A
Sbjct: 30 LSTATFCLFNEDHTIGNALRYILMKNGNVEFCGYSIPHPSEPKVHLRIQMYDNLSAIDAL 89
Query: 88 NQAINDLDKELDTLKSAFE 106
+ ++DL+ + ++++++
Sbjct: 90 YKGLDDLESMFNEIEASYK 108
>gi|123508377|ref|XP_001329625.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121912671|gb|EAY17490.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 124
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
K V+ ++ K N +FT+++E+HT+GN+L QL + +LFAGY++ HP + I +R+
Sbjct: 22 KLVTVVKEEKSDNCYTFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVK 81
Query: 77 TTSQ-SSPMQAYNQAINDLDKELDTLKSAF 105
+ + P + + AI L ++ L+S+F
Sbjct: 82 ASQNVNHPKELIDPAIEALKTKIAGLQSSF 111
>gi|159123105|gb|EDP48225.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus A1163]
Length = 229
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 54/153 (35%)
Query: 7 YERFVVPEGTKKVSYERDTK--------------------IINAASFTIEREEHTIGNIL 46
+E FV+ G +KV E DT+ I +++ FT +E+HT+GN+L
Sbjct: 53 FESFVLSPGEEKVEVETDTRKFFNQTSRCKSTTTDLMHLGIPSSSIFTFNKEDHTLGNLL 112
Query: 47 RMQLHRDENVLFAGYK----------------------------------LPHPLQYKII 72
R +L ++ +V+FAGYK +PHPL K
Sbjct: 113 RSRLLQNSHVIFAGYKVCPPMEAVFSSILFEVLGAFLESFGMHGSDELSQVPHPLVPKFE 172
Query: 73 VRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+R+ T + +P A A +DL K+L L F
Sbjct: 173 LRVQTDGEITPKDALLAACHDLVKDLGILSREF 205
>gi|443685824|gb|ELT89297.1| hypothetical protein CAPTEDRAFT_127647, partial [Capitella
teleta]
Length = 93
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
A+F + E+HT+GN LR + ++ +V F GY +PHP + KI +RI T S+ M +
Sbjct: 14 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGPSA-MSVLEK 72
Query: 90 AINDLDK 96
+NDL K
Sbjct: 73 GLNDLKK 79
>gi|242823716|ref|XP_002488115.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218713036|gb|EED12461.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 136
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A +
Sbjct: 44 AASFQFKEEGHTLGNALRYVIMKNPAVEFCGYTIPHPSEAKMNLRIQTYENTTAIEALEK 103
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 104 GLDDLMDLCDVVTDKF 119
>gi|407922733|gb|EKG15828.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 126
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T S +
Sbjct: 41 AASFEFENEDHTLGNALRYIIMKNPSVEFCGYSIPHPSEAKMNLRIQTYDDVSVYDVLEK 100
Query: 90 AINDLDKELDTLKSAF 105
++DL + D + F
Sbjct: 101 GLDDLAELCDVVIDKF 116
>gi|345560677|gb|EGX43802.1| hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC
24927]
Length = 141
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 19 VSYERDTKII---------NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY 69
+++E + KII + ASF E E+HT+GN LR + ++ V F GY +PHP +
Sbjct: 33 LTHENNAKIIMLGTATDDDSCASFQFENEDHTLGNALRWIIMKNPQVEFCGYSIPHPSET 92
Query: 70 KIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
K+ +RI T + + A + + DL D + F
Sbjct: 93 KMNMRIQTYGEITAKDALIKGLADLRDLCDVVTDKF 128
>gi|406864812|gb|EKD17855.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 142
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ NV F GY +PHP + + +RI T ++ + A ++
Sbjct: 55 AASFEFKKEDHTLGNSLRYIIMKNPNVEFCGYSIPHPSEELMNIRIQTYEGTTAVAALDK 114
Query: 90 AINDLDKELDTLKSAFEFLDA 110
DL D + A +F+ A
Sbjct: 115 GFQDLMDLCDEV--ALKFMQA 133
>gi|296810458|ref|XP_002845567.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
gi|238842955|gb|EEQ32617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
Length = 144
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T ++ +
Sbjct: 55 AASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEK 114
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 115 GLSDLMDLCDVVTEKF 130
>gi|390599234|gb|EIN08631.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 111
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA+F I E HTIGN LR + ++ V F GY +PHP + I VRI S + A
Sbjct: 18 LSAATFQIADETHTIGNALRWMIMKNPKVEFCGYSVPHPSEPNINVRIQMYDNLSALDAL 77
Query: 88 NQAINDLD 95
A+N LD
Sbjct: 78 IDALNRLD 85
>gi|366999324|ref|XP_003684398.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
gi|357522694|emb|CCE61964.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
Length = 130
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T ++ ++A +
Sbjct: 48 SASFQISEEDHTLGNALRHIIMKNPEVEFCGYSIPHPSETLLNLRIQTYGNTTAVEALQK 107
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 108 GLKDLMDMCDVVEEKF 123
>gi|392576372|gb|EIW69503.1| hypothetical protein TREMEDRAFT_71650 [Tremella mesenterica DSM
1558]
Length = 154
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + E+HT+GN LR L +D +V F GY PHP KI +R+ S ++
Sbjct: 43 SACTFCLWNEDHTLGNALRWMLMKDPDVEFCGYSAPHPSDPKIHLRVQMYDNLSAVECLR 102
Query: 89 QAINDLDKELDTLKSAF 105
+A+ +L + ++ SA+
Sbjct: 103 KALKNLRELFQSIDSAY 119
>gi|308798741|ref|XP_003074150.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
gi|116000322|emb|CAL50002.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
Length = 230
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 49 QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+LH++ +V+FAGYK PHP +++I+++HT + ++P+QA A+ +L E+ + F
Sbjct: 20 ELHKNPDVVFAGYKNPHPTDHRVILKVHTNANTTPVQALRDAVTNLRAEVSDIAQQF 76
>gi|449544336|gb|EMD35309.1| hypothetical protein CERSUDRAFT_156998 [Ceriporiopsis subvermispora
B]
Length = 111
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HT+GN LR L ++ V F GY +PHP + I +RI S + A
Sbjct: 18 LSAATYQIHDESHTLGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQMYDNLSSLTAL 77
Query: 88 NQAINDLDKELDTLKSAFE 106
A+++LD T++ A++
Sbjct: 78 ITALSNLDDLCGTVEDAYK 96
>gi|328863713|gb|EGG12812.1| hypothetical protein MELLADRAFT_70512 [Melampsora larici-populina
98AG31]
Length = 143
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AA+F ++ E+HT+GN LR + ++ +V F GY LPHP + K+ +RI S +QA +
Sbjct: 28 AATFCLKDEDHTLGNSLRYIIMKNPDVEFCGYSLPHPSEPKLNLRIQMYDNKSAVQALMK 87
Query: 90 AINDLD 95
+ DL+
Sbjct: 88 GLADLE 93
>gi|162605706|ref|XP_001713368.1| dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
gi|13794300|gb|AAK39677.1|AF083031_34 dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
Length = 108
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 12 VPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKI 71
VP ++K+ + N F E E+ T+G IL +L +NVLF GYK HPL I
Sbjct: 11 VPSTSEKIKILNFSNNKNTKEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNI 70
Query: 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107
++I T S + P+ AI ++ +L +++ EF
Sbjct: 71 FLKIKTNSFTDPVLELEWAIKEIYVDLSYIQTNLEF 106
>gi|444315668|ref|XP_004178491.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
gi|387511531|emb|CCH58972.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
Length = 102
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+AASF I E+HT+GN LR L R+ V F GY +PHP + + +R+ T + A
Sbjct: 19 SAASFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQTYGDITASDALA 78
Query: 89 QAINDLDKELDTLKSAF 105
Q + DL D ++ F
Sbjct: 79 QGLQDLMDLCDVVEDTF 95
>gi|50293019|ref|XP_448942.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528255|emb|CAG61912.1| unnamed protein product [Candida glabrata]
Length = 137
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
ASF I +E+HT+GN LR + ++ V F GY +PHP + + +RI T + + A +
Sbjct: 56 CASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNLRIQTYGNITAVDALQK 115
Query: 90 AINDLDKELDTLKSAF 105
++DL D +K F
Sbjct: 116 GLDDLIDLCDAVKDKF 131
>gi|326484083|gb|EGE08093.1| DNA-directed RNA polymerase I and III polypeptide [Trichophyton
equinum CBS 127.97]
Length = 147
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T ++ +
Sbjct: 58 AASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEK 117
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 118 GLSDLMDLCDIVTEKF 133
>gi|238494098|ref|XP_002378285.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|317148865|ref|XP_001822973.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
oryzae RIB40]
gi|220694935|gb|EED51278.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|391872363|gb|EIT81490.1| DNA-directed RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 142
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A +
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEALEK 109
Query: 90 AINDLDKELDTLKSAF 105
++ L D + F
Sbjct: 110 GLDSLMDLCDVVTDKF 125
>gi|146304610|ref|YP_001191926.1| DNA-directed RNA polymerase L [Metallosphaera sedula DSM 5348]
gi|172046935|sp|A4YHV0.1|RPOL_METS5 RecName: Full=DNA-directed RNA polymerase subunit L
gi|145702860|gb|ABP96002.1| DNA-directed RNA polymerase, subunit L [Metallosphaera sedula DSM
5348]
Length = 90
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ ER+ + N I+ E+HT+GN++ +L + V+ A Y LPHPL+ +++++I T
Sbjct: 2 EIAVEREEE--NYLELRIQGEDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIKIKT 59
Query: 78 TSQSSPMQAYNQAINDL 94
SP +A N+AI D+
Sbjct: 60 DGTISPREALNRAIEDV 76
>gi|115386266|ref|XP_001209674.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
gi|114190672|gb|EAU32372.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
Length = 142
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A +
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEALEK 109
Query: 90 AINDLDKELDTLKSAF 105
++ L D + F
Sbjct: 110 GLDSLMDLCDVVTEKF 125
>gi|350636095|gb|EHA24455.1| hypothetical protein ASPNIDRAFT_40356 [Aspergillus niger ATCC 1015]
Length = 138
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 45 TAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEA-- 102
Query: 89 QAINDLDKELDTL 101
L+K LDTL
Sbjct: 103 -----LEKGLDTL 110
>gi|317035305|ref|XP_001396609.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
niger CBS 513.88]
Length = 138
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 45 TAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEA-- 102
Query: 89 QAINDLDKELDTL 101
L+K LDTL
Sbjct: 103 -----LEKGLDTL 110
>gi|358369667|dbj|GAA86281.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus kawachii IFO 4308]
Length = 137
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 44 TAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEA-- 101
Query: 89 QAINDLDKELDTL 101
L+K LDTL
Sbjct: 102 -----LEKGLDTL 109
>gi|384500104|gb|EIE90595.1| hypothetical protein RO3G_15306 [Rhizopus delemar RA 99-880]
Length = 156
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
A +F + E+HT+GN LR ++++ +V F GY +PHP + K+ +RI TT +++ + A
Sbjct: 65 ALTFCFKNEDHTLGNSLRHVINKNRDVDFCGYSIPHPSEAKMNIRIQTTDKTTSIDALKT 124
Query: 90 AINDL 94
+ +L
Sbjct: 125 GLQNL 129
>gi|169612495|ref|XP_001799665.1| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
gi|160702522|gb|EAT83562.2| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
Length = 139
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDE--------NVLFAGYKLPHPLQYKIIVRIHTTSQS 81
AASF I+ E+HT+GN LR +H++E +V F GY +PHP + K+ +RI T
Sbjct: 43 AASFQIDGEDHTLGNALRYIIHKNEVANTIYSPDVEFCGYSIPHPSEAKMNLRIQTYDGV 102
Query: 82 SPMQAYNQAINDLDKELDTLKSAFE 106
S + + DL D ++ F+
Sbjct: 103 SVYSVLEKGLEDLMAMCDVVEEKFK 127
>gi|134082123|emb|CAK42239.1| unnamed protein product [Aspergillus niger]
Length = 153
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 61 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEA--- 117
Query: 90 AINDLDKELDTL 101
L+K LDTL
Sbjct: 118 ----LEKGLDTL 125
>gi|330834285|ref|YP_004409013.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
gi|329566424|gb|AEB94529.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
Length = 90
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N F I+ E+HT+GN++ + R V+ + Y LPHPL+ ++I+++ T SP+ A
Sbjct: 11 NYVEFRIQGEDHTLGNLVAATMRRVPGVILSTYYLPHPLKDELIIKVKTDGSISPVDALK 70
Query: 89 QAINDLDK 96
+AI ++K
Sbjct: 71 KAIEQIEK 78
>gi|332796908|ref|YP_004458408.1| RNA polymerase dimerization [Acidianus hospitalis W1]
gi|332694643|gb|AEE94110.1| RNA polymerase dimerization [Acidianus hospitalis W1]
Length = 91
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
A IE EEHT+GN+L L + E V++A Y PHPL I++++ T + PM A +A
Sbjct: 13 AEIEIEGEEHTLGNLLAGSLRKVEGVIYASYYQPHPLVNSIVLKVMTNGEIKPMDAIKKA 72
Query: 91 I----NDLDKELDTLK 102
I N +K L+ +K
Sbjct: 73 IEIAENYANKYLEEIK 88
>gi|332864991|ref|XP_001135267.2| PREDICTED: uncharacterized protein LOC735728 [Pan troglodytes]
Length = 293
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILR 47
MNAP +E F++ EG KK+S +D K+ NA FTI +E+HT+GNI++
Sbjct: 246 MNAPPAFESFLLFEGEKKISINKDFKVPNACLFTINKEDHTLGNIIK 292
>gi|156835838|ref|XP_001642180.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112621|gb|EDO14322.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 128
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T ++ ++A +
Sbjct: 46 CASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNLRIQTYGSTTAVEALQK 105
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 106 GLGDLMDMCDVVEEKF 121
>gi|237830945|ref|XP_002364770.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|211962434|gb|EEA97629.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|221507649|gb|EEE33253.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 178
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G KV + DT+ +F E++TIG I+R L D V F G + PHPL+ KI +R
Sbjct: 22 GVHKVEWVPDTRFPLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELR 81
Query: 75 IHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
I T S S+P +++ L LK+ F+
Sbjct: 82 IQTVS-SNPFTLVLESLRKRKAGLSLLKARFK 112
>gi|50312213|ref|XP_456138.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645274|emb|CAG98846.1| KLLA0F23760p [Kluyveromyces lactis]
Length = 127
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T + + ++A ++
Sbjct: 45 SASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHK 104
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 105 GLGDLMDMCDAVEDRF 120
>gi|326476483|gb|EGE00493.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
Length = 147
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T +
Sbjct: 57 TAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTIPHPSEAKMNLRIQTYDSTKVFTVLE 116
Query: 89 QAINDLDKELDTLKSAF 105
+ ++DL D + F
Sbjct: 117 KGLSDLMDLCDIVTEKF 133
>gi|367015282|ref|XP_003682140.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
gi|359749802|emb|CCE92929.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
Length = 129
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 4 PDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKL 63
PDR + ++P+ + + ASF I E+HT+GN LR + ++++V F GY +
Sbjct: 29 PDREKIKLLPQASSEDG--------TCASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSI 80
Query: 64 PHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
PHP + + +RI T ++ + + + DL D ++ F
Sbjct: 81 PHPSENLLNLRIQTYGATTAVDVLQKGLTDLMDLCDAVEDRF 122
>gi|363753556|ref|XP_003646994.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890630|gb|AET40177.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
Length = 127
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T + + ++A +
Sbjct: 44 TCASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRIQTYGKMTAVEALH 103
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL D ++ F
Sbjct: 104 KGLKDLMDLCDVVEDKF 120
>gi|145344709|ref|XP_001416869.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577095|gb|ABO95162.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 100
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 23 RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ-- 80
R N A+FT+ E+HT+ N LR L+ + +V GY +PHP++ + VR+ TT
Sbjct: 5 RRAATSNEATFTLAGEDHTLANALRHALNGNADVALCGYSVPHPMKREARVRVQTTGANG 64
Query: 81 SSPMQAYNQAINDLDKELDTLKSAFE 106
++ A A+ D+ D ++ A+E
Sbjct: 65 TTAQGAMRDALLDVISVCDRVREAYE 90
>gi|365988010|ref|XP_003670836.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
gi|343769607|emb|CCD25593.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
Length = 149
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I +E+HT+GN LR + ++ V F GY +PHP + + +RI T + + ++A ++
Sbjct: 67 SASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRIQTYGEITAVEALHK 126
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 127 GLQDLMDLCDVVEEKF 142
>gi|63054500|ref|NP_593118.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe 972h-]
gi|2500635|sp|Q09177.1|RPAC2_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 14 kDa polypeptide
gi|5579416|gb|AAD45538.1|AF079779_1 nuclear RNA polymerases I and III common subunit Rpc19
[Schizosaccharomyces pombe]
gi|6692475|gb|AAF24657.1|AF116919_1 Rpc19 [Schizosaccharomyces pombe]
gi|1255203|gb|AAC49604.1| DNA-directed RNA polymerase I and III 16 kDa polypeptide
[Schizosaccharomyces pombe]
gi|3721850|dbj|BAA33719.1| RPA17 [Schizosaccharomyces pombe]
gi|4126811|dbj|BAA36760.1| RPA17 [Schizosaccharomyces pombe]
gi|159883909|emb|CAB50921.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe]
Length = 125
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+ + +F I++E+HT+GN LR + ++ V F GY +PHP + K+ RI T ++ +
Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91
Query: 88 NQAINDLDKELDTLKSAF 105
+ ++DL D + F
Sbjct: 92 RKGLDDLIDLCDAVTEKF 109
>gi|336257723|ref|XP_003343685.1| hypothetical protein SMAC_08854 [Sordaria macrospora k-hell]
gi|380091918|emb|CCC10647.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 157
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ VRI T ++ ++A +
Sbjct: 66 AASFEFLEENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEALRK 125
Query: 90 AINDLDKELDTLKSAF 105
+ D+ + D + F
Sbjct: 126 GLRDIQELCDVVSDKF 141
>gi|119467720|ref|XP_001257666.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
gi|119405818|gb|EAW15769.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
Length = 142
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A
Sbjct: 49 TAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYDSTTAVEALE 108
Query: 89 QAINDLDKELDTLKSAF 105
+ + L D + F
Sbjct: 109 KGLEALMDLCDVVTDKF 125
>gi|393243778|gb|EJD51292.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 110
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ + E HTIGN LR L ++ V F GY PHP + I +RI + S + A
Sbjct: 18 LSAATYCLHDESHTIGNALRWMLMKNPKVEFCGYSAPHPSEPVIHLRIQMYDRHSSLTAL 77
Query: 88 NQAINDLDK 96
+A+++LD+
Sbjct: 78 TEALDNLDQ 86
>gi|448097294|ref|XP_004198635.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359380057|emb|CCE82298.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
A+SF I E+HT+GN LR + ++ V F GY +PHP + K+ VRI T + ++A +Q
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNVRIQTYGNITAVEALHQ 103
Query: 90 AINDL 94
+++L
Sbjct: 104 GLDNL 108
>gi|225709232|gb|ACO10462.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E HT+GN LR + ++ +VLF GY +PHP + ++++RI T S A
Sbjct: 20 SCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMLLRIQTVSSVPTQDALR 79
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL + S F
Sbjct: 80 RGLEDLKDMCSVVSSKF 96
>gi|196012371|ref|XP_002116048.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
gi|190581371|gb|EDV21448.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
Length = 92
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E HT+GN +R + ++ GY +PHP Q+KI +RI T ++ ++ +
Sbjct: 9 DCQTFVLHGENHTLGNAVRYLIMKNPETKLCGYSVPHPSQHKINLRIETNNEKDAIEVFR 68
Query: 89 QAINDLDKELDTLKSAFE 106
+ DLD+ D + F+
Sbjct: 69 TGLQDLDQVCDHVLKTFD 86
>gi|443730362|gb|ELU15913.1| hypothetical protein CAPTEDRAFT_128661, partial [Capitella
teleta]
Length = 94
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQAY 87
A+F + E+HT+GN LR + ++ +V F GY +PHP + KI +RI T T++ M
Sbjct: 12 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGTNRVISMSVL 71
Query: 88 NQAINDLDK 96
+ +NDL K
Sbjct: 72 EKGLNDLKK 80
>gi|389747581|gb|EIM88759.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 101
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA+F I E HT+GN LR + ++ NV F GY +PHP + I +RI S +
Sbjct: 8 LSAATFQIFDESHTMGNALRWIIMKNPNVEFCGYSVPHPSENFIQLRIQMYDGLSALATL 67
Query: 88 NQAINDLDKELDTLKSAFE 106
+A+ DLD T++ +++
Sbjct: 68 EKALYDLDALYATIEESYK 86
>gi|367028040|ref|XP_003663304.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
gi|347010573|gb|AEO58059.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
Length = 157
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ VRI T ++ ++A +
Sbjct: 73 AASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNVRIQTFEGTTAIEALQK 132
Query: 90 AINDLDKELDTLKSAFEFLDA 110
+ DL + D + +F+DA
Sbjct: 133 GLRDLQELCDIVTD--KFIDA 151
>gi|302817582|ref|XP_002990466.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
gi|300141634|gb|EFJ08343.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
Length = 92
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+++F E+HT+GN LR L++D V+F GY +PHP + K+ VR+ TT + + +
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTGAPA-KEVFKD 61
Query: 90 AINDL 94
A+ D+
Sbjct: 62 ALLDM 66
>gi|403223937|dbj|BAM42067.1| RNA polymerases I and III subunit [Theileria orientalis strain
Shintoku]
Length = 981
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
+F+IE E+HT+GN LR L ++V+FAGY +PHP++ ++ VRI TT +
Sbjct: 12 TFSIENEDHTLGNTLRAVLVERDDVIFAGYSVPHPMEPEMNVRIQTTEE 60
>gi|302804069|ref|XP_002983787.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
gi|300148624|gb|EFJ15283.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
Length = 92
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+++F E+HT+GN LR L++D V+F GY +PHP + K+ VR+ TT
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTG 52
>gi|452841596|gb|EME43533.1| hypothetical protein DOTSEDRAFT_63729 [Dothistroma septosporum
NZE10]
Length = 133
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF+ E E+HT+GN LR L +D +V F GY +PHP + + +RI T +
Sbjct: 40 AASFSFENEDHTLGNALRYMLTKDPDVEFCGYSIPHPSEPFMNIRIQTWDGVHVNVVLRR 99
Query: 90 AINDLDKELDTLKSAF 105
A+ +L D ++ F
Sbjct: 100 ALENLADLCDAVEEKF 115
>gi|254572994|ref|XP_002493606.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033405|emb|CAY71427.1| hypothetical protein PAS_chr4_0925 [Komagataella pastoris GS115]
gi|328354564|emb|CCA40961.1| DNA-directed RNA polymerase III subunit C19 [Komagataella pastoris
CBS 7435]
Length = 136
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V + GY +PHP + K+ +RI T + ++A +
Sbjct: 47 AASFQILDEDHTLGNSLRYIIIKNPEVEYCGYSIPHPSEAKLNIRIQTYGGMTAVEALRK 106
Query: 90 AINDLDKELDTLKSAF 105
++DL D ++ F
Sbjct: 107 GLDDLVDICDHVEKKF 122
>gi|401839526|gb|EJT42714.1| RPC19-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 142
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T + + + A +
Sbjct: 61 ASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKG 120
Query: 91 INDLDKELDTLKSAF 105
+ DL D +++ F
Sbjct: 121 LKDLMDLCDVVEAKF 135
>gi|116208000|ref|XP_001229809.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
gi|88183890|gb|EAQ91358.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
Length = 155
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ VRI T ++ ++A +
Sbjct: 70 AASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNVRIQTFDGTTAVEALEK 129
Query: 90 AINDLDKELDTLKSAF 105
+ DL + D + F
Sbjct: 130 GLRDLQELCDVVTDEF 145
>gi|365758721|gb|EHN00549.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 156
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T + + + A +
Sbjct: 75 ASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKG 134
Query: 91 INDLDKELDTLKSAF 105
+ DL D +++ F
Sbjct: 135 LKDLMDLCDVVEAKF 149
>gi|378755189|gb|EHY65216.1| hypothetical protein NERG_01662 [Nematocida sp. 1 ERTm2]
Length = 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
T KV D K+ N+ +I E+HTIGN L +L ++E+V FA YK+PHPLQ + V++
Sbjct: 17 THKVVITED-KLANSIELSIRDEDHTIGNALASELQKNEDVAFAAYKIPHPLQNILKVKV 75
Query: 76 HT-TSQSSPMQAYNQAINDLDKELDTLKS 103
S+ P+ +++ L + +++ S
Sbjct: 76 VVDKSEDRPIDFVKASLDSLINDCESMLS 104
>gi|121703648|ref|XP_001270088.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
gi|119398232|gb|EAW08662.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
Length = 142
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A +
Sbjct: 50 AASFQFEGEGHTLGNALRYTIMKNPEVEFCGYTIPHPSEAKMNLRIQTYDTTNAVEALEK 109
Query: 90 AINDLDKELDTLKSAF 105
+ L D + F
Sbjct: 110 GLEALMDLCDVVTDKF 125
>gi|448111317|ref|XP_004201814.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359464803|emb|CCE88508.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
A+SF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T + ++A +Q
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNITAVEALHQ 103
Query: 90 AINDLDKELDTLKSAF 105
+++L + ++ F
Sbjct: 104 GLDNLVELCGVIEDKF 119
>gi|255713672|ref|XP_002553118.1| KLTH0D09350p [Lachancea thermotolerans]
gi|238934498|emb|CAR22680.1| KLTH0D09350p [Lachancea thermotolerans CBS 6340]
Length = 146
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T + + ++ +
Sbjct: 64 CASFQISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEVLQK 123
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 124 GLQDLMDLCDAVEDKF 139
>gi|402077371|gb|EJT72720.1| DNA-directed RNA polymerase I and III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 157
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF ++E HT+GN LR + ++ V Y +PHP ++K+ +RI T ++ ++A
Sbjct: 66 TAASFEFQKEGHTLGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYDGTTAIEALE 125
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL D + F
Sbjct: 126 KGLRDLQDLCDVVTDKF 142
>gi|85084361|ref|XP_957305.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
gi|28918394|gb|EAA28069.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
Length = 156
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E HT+GN LR + ++ +V F Y +PHP + K+ VRI T ++ ++A
Sbjct: 64 TAASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEALR 123
Query: 89 QAINDLDKELDTLKSAF 105
+ + D+ D + F
Sbjct: 124 KGLRDIQDLCDVVSDKF 140
>gi|344232063|gb|EGV63942.1| RNA polymerase I and III subunit [Candida tenuis ATCC 10573]
Length = 123
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI T + ++A +
Sbjct: 43 AASFQIVDEDHTLGNSLRYVIMKNPEVEFVGYSIPHPSENKLNIRIQTYGSITAVEALHL 102
Query: 90 AINDLDKELDTLKSAF 105
+ +L + +++ F
Sbjct: 103 GLENLSQLCGVIETKF 118
>gi|302308422|ref|NP_985330.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|299790625|gb|AAS53154.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|374108558|gb|AEY97464.1| FAFL220Cp [Ashbya gossypii FDAG1]
Length = 135
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T + + + A ++
Sbjct: 53 CASFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRIQTYGKVTAVDALHK 112
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 113 GLQDLMDMCDVVEDKF 128
>gi|401412023|ref|XP_003885459.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
gi|325119878|emb|CBZ55431.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
Length = 208
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G KV + DT+ +F E++TIG +LR L D V F G + PHPL+ KI +R
Sbjct: 22 GLHKVEWIPDTRFPLCGTFVFHLEDYTIGYVLRNDLLNDARVKFVGLRQPHPLEPKIELR 81
Query: 75 IHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
I T S +SP +++ L L++ F+
Sbjct: 82 IQTVS-NSPFTLVLESLRKRKAALSLLRARFK 112
>gi|410076614|ref|XP_003955889.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
gi|372462472|emb|CCF56754.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
Length = 131
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + + +RI T + + + A +
Sbjct: 49 SASFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIRIQTYGEITAVDALKK 108
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++ F
Sbjct: 109 GLADLMDLCDVVEETF 124
>gi|159490407|ref|XP_001703168.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
gi|158270708|gb|EDO96544.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
Length = 99
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AA+F+IE E+HT+ N LR L+++ +V F GY +PHP + + +R+ TT + A
Sbjct: 10 AATFSIEEEDHTLANSLRFFLNKNPHVAFCGYSMPHPSEELVNLRVQTT--GAARGAVKA 67
Query: 90 AINDLDKELDTLKSAFE 106
A D+ + ++S +
Sbjct: 68 ACEDVSQVCGHMRSTLQ 84
>gi|242211754|ref|XP_002471714.1| predicted protein [Postia placenta Mad-698-R]
gi|220729270|gb|EED83148.1| predicted protein [Postia placenta Mad-698-R]
Length = 89
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 24 DTKIINAASFTIEREEHTIGNILRM-QLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
DTKI NAA+ + +++HT+GN++R D YK+PHPLQ +++I T +
Sbjct: 4 DTKIPNAATIKVLKQDHTLGNLIRAYTTVVDAANFVCRYKVPHPLQPHFLIKIQTDGTIT 63
Query: 83 PMQAYNQAINDLDKELDTLKSAFE 106
P QA L + +L++ F+
Sbjct: 64 PTAVLEQACTKLIGTMASLEAKFK 87
>gi|357157134|ref|XP_003577696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 107
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+A+SF+I E+HT+ N +R L++D V F GY +PHP K+ +R+ TT
Sbjct: 10 SASSFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
>gi|255722409|ref|XP_002546139.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136628|gb|EER36181.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 128
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ RI T + ++A++
Sbjct: 39 SASFQIIDEDHTLGNALRYIIMKNPEVEFVGYSIPHPSENKLNFRIQTYGNITAVEAFHM 98
Query: 90 AINDLDKELDTLKSAFE 106
+++L + ++ F+
Sbjct: 99 GLDNLSELCGVIEDKFQ 115
>gi|198419255|ref|XP_002121265.1| PREDICTED: similar to LOC494863 protein [Ciona intestinalis]
Length = 109
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F I E+HT+GN LR L ++ ++ F GY +PHP + K+ +RI T S+ +A +
Sbjct: 23 CCTFIIHNEDHTLGNALRYILMKNPDIEFCGYSIPHPAENKMNLRIQTRGISA-TEALKK 81
Query: 90 AINDLDKELDTLKSAFE 106
+ DL+ + + FE
Sbjct: 82 GLKDLNSVCEHILKTFE 98
>gi|225709920|gb|ACO10806.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F + E HT+GN LR + ++ +VLF GY +PHP + ++ +RI T S A + +
Sbjct: 23 TFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMPLRIQTVSSVPAQDALRRGL 82
Query: 92 NDLDKELDTLKSAF 105
DL + S F
Sbjct: 83 EDLKDMCSVVSSKF 96
>gi|357160551|ref|XP_003578801.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 108
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
A+SF+I E+HT+ N +R L++D V F GY +PHP K+ +R+ TT
Sbjct: 11 ASSFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
>gi|389639282|ref|XP_003717274.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
gi|351643093|gb|EHA50955.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
Length = 149
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF +E HT+GN LR + ++ V Y +PHP ++K+ +RI T ++ ++A
Sbjct: 58 TAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYEGTTAIEALE 117
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL + D + F
Sbjct: 118 KGLKDLQELCDVVTDKF 134
>gi|328865481|gb|EGG13867.1| putative RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 103
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
VS RD A+F + E+HTIGN L L ++ V F+GY +PHP K+ +RI T
Sbjct: 17 VSERRD-----CATFIMTEEDHTIGNSLHYVLMKNPKVDFSGYSIPHPSDNKLNLRIQTK 71
Query: 79 SQSSPMQAYNQAINDL 94
++S A +ND+
Sbjct: 72 GETSAQDAILTGLNDI 87
>gi|58262798|ref|XP_568809.1| DNA-directed RNA polymerase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108506|ref|XP_777204.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259889|gb|EAL22557.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223459|gb|AAW41502.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 155
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + +E+HT+GN LR + +D V F GY PHP + KI +RI S +
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 89 QAINDLDKELDTLKSAF 105
+A+++L L+ + ++
Sbjct: 98 RALSNLRDLLNAVNDSY 114
>gi|340959302|gb|EGS20483.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 164
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQAY 87
AASF E HT+GN L ++R+ +V F Y +PHP + K+ VRI T S ++ +QA
Sbjct: 71 AASFEFLNEGHTLGNALSYIINRNPDVEFCAYAIPHPSENKMNVRIQTFEGSGTTAIQAL 130
Query: 88 NQAINDLDKELDTLKSAF 105
+ + DL D + F
Sbjct: 131 EKGLRDLQDLCDVVTDKF 148
>gi|321252347|ref|XP_003192374.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
gi|317458842|gb|ADV20587.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
Length = 155
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + +E+HT+GN LR + +D V F GY PHP + KI +RI S +
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 89 QAINDLDKELDTLKSAF 105
+A+++L L+ + ++
Sbjct: 98 RALSNLRDLLNAVNDSY 114
>gi|268573450|ref|XP_002641702.1| Hypothetical protein CBG10036 [Caenorhabditis briggsae]
gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
Length = 145
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T
Sbjct: 54 SFEQDP---SNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++ +A +++ T++ FE
Sbjct: 111 GINALEVLVKAFESVEQVFSTIRGKFE 137
>gi|320166880|gb|EFW43779.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 166
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 24 DTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
D + I A+ I+ E+HTIGN LR L ++ +V F GY +PHP + KI VR+ T S
Sbjct: 64 DEQSIENATVAIKDEDHTIGNALRYMLMKNPDVEFCGYSIPHPSENKIHVRVQTVPGSG 122
>gi|341877867|gb|EGT33802.1| hypothetical protein CAEBREN_16714 [Caenorhabditis brenneri]
Length = 138
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T + ++ +A ++K
Sbjct: 62 EDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTRDGINALEVLMKAFESVEKI 121
Query: 98 LDTLKSAFE 106
T++ FE
Sbjct: 122 FSTIREKFE 130
>gi|336375362|gb|EGO03698.1| hypothetical protein SERLA73DRAFT_130145 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388418|gb|EGO29562.1| hypothetical protein SERLADRAFT_378617 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HT+GN LR L ++ V F GY +PHP + I +RI + S + A
Sbjct: 18 LSAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENLIQLRIQMYDKLSSLTAL 77
Query: 88 NQAINDLD 95
+A+++LD
Sbjct: 78 LEALDNLD 85
>gi|393217041|gb|EJD02531.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 111
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 25 TKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPM 84
T ++AA+F + E HTIGN LR L ++ +V F GY PHP + I VR+ S +
Sbjct: 15 TPDLSAATFRLNDESHTIGNALRWMLMKNPDVEFCGYSAPHPSENAIQVRVQMYDGKSAL 74
Query: 85 QAYNQAINDLDKELDTLKSAFE 106
A A+ LD T+ A++
Sbjct: 75 AALIAALEQLDSLFATIDDAYQ 96
>gi|405118365|gb|AFR93139.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii
H99]
Length = 155
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + +E+HT+GN LR + +D V F GY PHP + KI +RI S +
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 89 QAINDLDKELDTLKSAF 105
+A+++L L+ + +
Sbjct: 98 RALSNLRDLLNAVNDTY 114
>gi|308502351|ref|XP_003113360.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
gi|308265661|gb|EFP09614.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
Length = 139
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T
Sbjct: 48 SFEQDP---SNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 104
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++ +A +++ T++ FE
Sbjct: 105 GINALEVLVKAFESVEQIFSTIRGKFE 131
>gi|330799276|ref|XP_003287672.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
gi|325082292|gb|EGC35778.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
Length = 116
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 2 NAPDRYERFVVPE-GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
NA D F+ P KV D + A+F E+HT+GN L L ++ V F+G
Sbjct: 8 NATDSCNSFIPPSFDVNKVEIISDRP--DCATFIFTDEDHTLGNSLHYVLMKNPKVDFSG 65
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
Y +PHP ++ +RI T S ++ Q +ND+
Sbjct: 66 YSIPHPSDNRMNLRIQTKGHISAQESLLQGLNDI 99
>gi|387593600|gb|EIJ88624.1| hypothetical protein NEQG_01314 [Nematocida parisii ERTm3]
gi|387597255|gb|EIJ94875.1| hypothetical protein NEPG_00400 [Nematocida parisii ERTm1]
Length = 97
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
T KV D K+ N+ +I E+HTIGN L +L ++++V F+ YK+PHPLQ + V++
Sbjct: 6 THKVVITED-KLSNSIEISIRDEDHTIGNALASELQKEKDVSFSAYKIPHPLQNILKVKV 64
Query: 76 HT-TSQSSPMQAYNQAINDLDKELDTLKS 103
S+ P++ +++ L + D++ S
Sbjct: 65 VVEKSEDRPIEFVKASLDHLISDCDSMLS 93
>gi|449281716|gb|EMC88730.1| DNA-directed RNA polymerases I and III subunit RPAC2, partial
[Columba livia]
Length = 90
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++ +
Sbjct: 10 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGTLPAVEPFR 69
Query: 89 QAINDLDKELDTLKSAFE 106
+ +NDL + + FE
Sbjct: 70 KGLNDLMGVCQHVLNTFE 87
>gi|331230585|ref|XP_003327957.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309306947|gb|EFP83538.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 154
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F+++ E+HT+GN LR + ++ V F GY LPHP + K+ +RI S A
Sbjct: 34 DAMTFSLKDEDHTLGNSLRYIIMKNPEVEFCGYSLPHPSEPKLHLRIQMYDNKSAAGALA 93
Query: 89 QAINDLDK 96
+ ++DL++
Sbjct: 94 KGLDDLEQ 101
>gi|326924460|ref|XP_003208445.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Meleagris gallopavo]
Length = 134
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++ +
Sbjct: 20 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEPFR 79
Query: 89 QAINDLDKELDTLKSAFE 106
+ +NDL + FE
Sbjct: 80 KGLNDLMGVCQHVLDTFE 97
>gi|405969527|gb|EKC34493.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Crassostrea
gigas]
Length = 549
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F E+HT+GN LR + ++ V F GY +PHP + KI RI T + +
Sbjct: 25 CKTFVFHNEDHTLGNSLRYMVMKNPEVQFCGYSVPHPSESKINFRIQTHGELG-TDVLKK 83
Query: 90 AINDLDKELDTLKSAFEF 107
+ DL+ ++D K ++F
Sbjct: 84 GLKDLNSKMDADKDTYQF 101
>gi|17553746|ref|NP_499132.1| Protein RPAC-19 [Caenorhabditis elegans]
gi|464673|sp|P34476.1|RPAC2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|3877824|emb|CAA80165.1| Protein RPAC-19 [Caenorhabditis elegans]
Length = 144
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T
Sbjct: 53 SFEQDP---SNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++ +A +++ T++ FE
Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFE 136
>gi|225434732|ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Vitis vinifera]
gi|297745971|emb|CBI16027.3| unnamed protein product [Vitis vinifera]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
++F++ E+HT+ N +R L++D V F GY +PHP ++ +R+ TT S+ + A
Sbjct: 12 STFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTGDSA-REVLKDA 70
Query: 91 INDLDKELDTLKSAFE 106
DL ++S F+
Sbjct: 71 CQDLMLMCQHVRSTFD 86
>gi|347829199|emb|CCD44896.1| hypothetical protein [Botryotinia fuckeliana]
Length = 148
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF ++E+HT+GN LR + ++ +V F GY +PHP + + +RI T S+ A +
Sbjct: 61 AASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQTYDNSA-EDALRK 119
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 120 GLDDLIDLCDVVADKF 135
>gi|11595476|emb|CAC18330.1| RPB11b1beta protein [Homo sapiens]
gi|56270591|gb|AAH86857.1| POLR2J2 protein [Homo sapiens]
Length = 116
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILR 47
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIK 46
>gi|406700270|gb|EKD03443.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 162
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + E+HT+GN LR + +D +V + GY PHP + KI +R+ S +
Sbjct: 49 SACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLR 108
Query: 89 QAINDLDKELDTLKSAFE 106
+A+++L +T+ + ++
Sbjct: 109 RALSNLRDLYETIGAQYD 126
>gi|115487728|ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113648858|dbj|BAF29370.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|125578768|gb|EAZ19914.1| hypothetical protein OsJ_35508 [Oryza sativa Japonica Group]
gi|215768489|dbj|BAH00718.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186562|gb|EEC68989.1| hypothetical protein OsI_37758 [Oryza sativa Indica Group]
Length = 108
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
A++F+I E+HT+ N +R L++D V F GY +PHP K+ +R+ TT
Sbjct: 11 ASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTG 60
>gi|401883042|gb|EJT47278.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 184
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A +F + E+HT+GN LR + +D +V + GY PHP + KI +R+ S +
Sbjct: 71 SACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLR 130
Query: 89 QAINDLDKELDTLKSAFE 106
+A+++L +T+ + ++
Sbjct: 131 RALSNLRDLYETIGAQYD 148
>gi|296417394|ref|XP_002838343.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634271|emb|CAZ82534.1| unnamed protein product [Tuber melanosporum]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ----SSPM 84
+ASF I E+HT+GN LR + ++ V F GY +PHP + K+ +RI + + P
Sbjct: 8 GSASFEILGEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEEKMNIRIQIYPEYWEHTKPY 67
Query: 85 QAYNQAINDLDKELDTLKSAFE 106
A + ++DL D + AF+
Sbjct: 68 DALMKGLDDLADLCDHITHAFK 89
>gi|118089544|ref|XP_426271.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gallus gallus]
Length = 114
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 15 GTKKVSYE---RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKI 71
G +K + E D N +F + E+HT+GN LR + ++ +V F GY + HP + KI
Sbjct: 5 GERKAALEMVQADGTDGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKI 64
Query: 72 IVRIHTTSQSSPMQAYNQAINDL 94
RI T ++ + + +NDL
Sbjct: 65 NFRIQTRGSLPAVEPFRKGLNDL 87
>gi|391334302|ref|XP_003741544.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Metaseiulus occidentalis]
Length = 104
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F +E E+HT+GN LR + ++ V F GY +PHP + I VRI + S + A +
Sbjct: 15 CMTFLLENEDHTLGNALRCMIMKNPAVQFCGYAIPHPSERTIHVRIQMIN-GSAIDALEK 73
Query: 90 AINDLDKELDTLKSAFE 106
DL ++ + + FE
Sbjct: 74 GFQDLRDMMEHIHATFE 90
>gi|159117927|ref|XP_001709183.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157437298|gb|EDO81509.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 101
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
A+F I E+HT+GN +R L + V FAGY +PHP + K+ +RI + +QS+
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSA 57
>gi|15897236|ref|NP_341841.1| DNA-directed RNA polymerase subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|284174481|ref|ZP_06388450.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus 98/2]
gi|384433747|ref|YP_005643105.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
gi|21263959|sp|Q980K0.1|RPOL_SULSO RecName: Full=DNA-directed RNA polymerase subunit L
gi|167013265|pdb|2PA8|L Chain L, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744889|pdb|2PMZ|L Chain L, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744900|pdb|2PMZ|X Chain X, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782152|pdb|3HKZ|L Chain L, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|239782165|pdb|3HKZ|V Chain V, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|13813435|gb|AAK40631.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|261601901|gb|ACX91504.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
Length = 92
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L R V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70
Query: 89 QAINDL 94
+AI ++
Sbjct: 71 KAIENI 76
>gi|115638551|ref|XP_794921.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Strongylocentrotus purpuratus]
Length = 117
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + +D +V F GY +PHP + +I RI T + +
Sbjct: 28 DCVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQTKGAPAG-DVFG 86
Query: 89 QAINDLDKELDTLKSAFE 106
+ + +L + D ++ F+
Sbjct: 87 KGLANLSEVCDHIQQTFK 104
>gi|242085108|ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
gi|241943672|gb|EES16817.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
Length = 108
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++++F+I E+HT+ N +R L++D V F GY +PHP + K+ +R+ TT
Sbjct: 10 SSSTFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTTG 60
>gi|346324843|gb|EGX94440.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Cordyceps
militaris CM01]
Length = 162
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ VRI T + + + A +
Sbjct: 73 AASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNVRIQ-TYEGTAIDALKK 131
Query: 90 AINDLDKELDTLKSAF 105
++DL + D + F
Sbjct: 132 GLDDLQQVCDVVADEF 147
>gi|345328398|ref|XP_001514864.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Ornithorhynchus anatinus]
Length = 114
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +F + E+HT+GN LR + ++ V F GY + HP + KI RI T ++ +
Sbjct: 22 NCVTFVLHDEDHTLGNSLRYMVMKNPEVEFCGYSITHPSESKINFRIQTRGGLPAVEPFR 81
Query: 89 QAINDLDKELDTLKSAFE 106
Q +N+L + + FE
Sbjct: 82 QGLNELTDVCQHVLNKFE 99
>gi|308162692|gb|EFO65073.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia P15]
Length = 100
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
A+F I E+HT+GN +R L + V FAGY +PHP + K+ +RI + +QS+
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSA 57
>gi|340522545|gb|EGR52778.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S+ + A +
Sbjct: 62 AASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGSA-VNALKK 120
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 121 GLSDLQDVCDVVAEEF 136
>gi|322699006|gb|EFY90771.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium acridum CQMa 102]
Length = 154
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S ++ + A +
Sbjct: 65 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGTA-VDALKK 123
Query: 90 AINDLDKELDTLKSAF 105
+ DL D + F
Sbjct: 124 GLADLQDVCDVVSDEF 139
>gi|407044128|gb|EKE42390.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
Length = 85
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQA 86
N S+TIE E+HT N LR + + GY +PHP K++ RI T +S+ +P
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSKKTPFDV 62
Query: 87 YNQAINDLDKELDTLKSAFE 106
+L +++D L +E
Sbjct: 63 MEDGCKELIRQMDELNELYE 82
>gi|326432315|gb|EGD77885.1| hypothetical protein PTSG_09519 [Salpingoeca sp. ATCC 50818]
Length = 164
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+A+F I E+HT+GN LR L+RD V F GY PHP I +R+ Q P++
Sbjct: 37 QSATFVIANEDHTLGNSLRWILNRDPRVDFCGYSQPHPSDKLIKLRV----QPKPVEEGE 92
Query: 89 QAINDLDKELDTLKSAFEFLD 109
+ ++ + D LK+ + D
Sbjct: 93 EPVDATEVLRDALKNLMQMCD 113
>gi|340370096|ref|XP_003383582.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Amphimedon queenslandica]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+ +F ++ E+HT+GN LR L ++ +V F GY PHP + KI +RI TT S+ +
Sbjct: 19 VTCMTFVLQDEDHTLGNALRWILIKNPDVSFCGYSTPHPSERKINLRIQTTGISA-TEVL 77
Query: 88 NQAINDL 94
+ + DL
Sbjct: 78 RRGLEDL 84
>gi|440468859|gb|ELQ37993.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae Y34]
gi|440487550|gb|ELQ67333.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae P131]
Length = 151
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQA 86
AASF +E HT+GN LR + ++ V Y +PHP ++K+ +RI T T ++ ++A
Sbjct: 58 TAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYATEGTTAIEA 117
Query: 87 YNQAINDLDKELDTLKSAF 105
+ + DL + D + F
Sbjct: 118 LEKGLKDLQELCDVVTDKF 136
>gi|119196667|ref|XP_001248937.1| hypothetical protein CIMG_02708 [Coccidioides immitis RS]
Length = 99
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
AASF E E+HT+GN LR + ++ +V F GY +PHP + K+ +RI T
Sbjct: 44 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQT 91
>gi|15922592|ref|NP_378261.1| DNA-directed RNA polymerase subunit L [Sulfolobus tokodaii str. 7]
gi|21263952|sp|Q96YA7.1|RPOL_SULTO RecName: Full=DNA-directed RNA polymerase subunit L
gi|15623382|dbj|BAB67370.1| DNA-directed RNA polymerase subunit L [Sulfolobus tokodaii str. 7]
Length = 93
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I+ EEHT+GN+L+ L + V FA Y PHPL II++I T SP +A
Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70
Query: 89 QAI----NDLDKELDTLKS 103
+AI D +K ++ +KS
Sbjct: 71 KAIELAEEDTNKFIEEVKS 89
>gi|126308959|ref|XP_001380567.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Monodelphis domestica]
Length = 134
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +F + E+HT+GN LR + ++ V F GY + HP + KI RI T ++ +
Sbjct: 42 NCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKGGLPAVEPFR 101
Query: 89 QAINDLDKELDTLKSAFE 106
Q +N+L + + FE
Sbjct: 102 QGLNELMDVCQHVLNKFE 119
>gi|70984198|ref|XP_747617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|66845244|gb|EAL85579.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|159122404|gb|EDP47525.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus A1163]
Length = 161
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
AASF E E HT+GN LR + ++ V F GY +PHP + K+ +RI T
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSEAKMNLRIQT 97
>gi|302916795|ref|XP_003052208.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733147|gb|EEU46495.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S ++ + A +
Sbjct: 58 AASFEFVDEGHTLGNALRYIVMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTA-VDALKK 116
Query: 90 AINDLDKELDTLKSAF 105
+ DL D + F
Sbjct: 117 GLTDLQDVCDVVADEF 132
>gi|242068175|ref|XP_002449364.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
gi|241935207|gb|EES08352.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
Length = 107
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
+++F+I E+HT+ N R L++D V F GY +PHP + K+ +R+ TT ++
Sbjct: 11 SSTFSIMEEDHTLANSARFVLNQDPRVAFCGYSIPHPAEKKVNIRVQTTGDAA 63
>gi|30172700|gb|AAP22341.1| unknown [Homo sapiens]
Length = 76
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILR 47
MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIK 46
>gi|302764430|ref|XP_002965636.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
gi|300166450|gb|EFJ33056.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
Length = 51
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
+++F I E+HT GN +R L+ D V F GY +PHP ++ VR+ TT +
Sbjct: 1 SSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTGK 51
>gi|449703286|gb|EMD43765.1| DNA-directed RNA polymerase I and III subunit Rpc19, putative
[Entamoeba histolytica KU27]
Length = 85
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT--TSQSSPMQA 86
N S+TIE E+HT N LR + + GY +PHP K++ RI T +S +P
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDV 62
Query: 87 YNQAINDLDKELDTLKSAFE 106
+L +++D L +E
Sbjct: 63 MEDGCKELIRQMDELNELYE 82
>gi|322707085|gb|EFY98664.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 155
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S ++ + A +
Sbjct: 66 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGTA-VDALKK 124
Query: 90 AINDLDKELDTLKSAF 105
+ DL D + F
Sbjct: 125 GLVDLQDVCDVVSDEF 140
>gi|387018232|gb|AFJ51234.1| DNA-directed RNA polymerases I and III subunit RPAC2-like [Crotalus
adamanteus]
Length = 114
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F + E+HT+GN LR + ++ + F GY + HP + KI RI T + A+ +
Sbjct: 25 CVTFVLNNEDHTLGNSLRYMIMKNPEIEFCGYSITHPSESKINFRIQTRGGLPAIDAFQK 84
Query: 90 AINDLDKELDTLKSAFE 106
+ DL + S FE
Sbjct: 85 GLEDLTGVCQHVLSTFE 101
>gi|320590409|gb|EFX02852.1| DNA-directed RNA polymerase 1 and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 171
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T + + +QA +
Sbjct: 82 AASFEFLDEGHTLGNSLRYIIMKNPDVEFCAYTIPHPSEAKMNIRIQ-TYEGTALQALEK 140
Query: 90 AINDLDKELDTLKSAF 105
++DL D ++ +
Sbjct: 141 GLHDLQDLCDVVEEKY 156
>gi|308801407|ref|XP_003078017.1| trithorax-like (ISS) [Ostreococcus tauri]
gi|116056468|emb|CAL52757.1| trithorax-like (ISS) [Ostreococcus tauri]
Length = 2007
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ--SSPMQAYN 88
A+FT+E E+HT+GN LR L+ + +V GY PHP++ ++ VR+ T + ++ A
Sbjct: 1920 ATFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGAMR 1979
Query: 89 QAINDLDKELDTLKSAFE 106
A+ D+ D + ++E
Sbjct: 1980 DALLDVISVCDHVHESYE 1997
>gi|429855586|gb|ELA30535.1| DNA-directed RNA polymerase i and iii 14 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 138
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T ++ + A
Sbjct: 53 SAASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNLRIQTYDGTA-VAALQ 111
Query: 89 QAINDLDKELDTLKSAF 105
Q + DL DT+ F
Sbjct: 112 QGLKDLQALSDTVAEEF 128
>gi|428179316|gb|EKX48188.1| DNA-directed RNA polymerase subunit [Guillardia theta CCMP2712]
Length = 148
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
F + E+HT+GN LR+ + R+ NV F GY +PHPL+ K+ + I T +
Sbjct: 64 FVMRNEDHTLGNALRIVISRNPNVTFCGYSVPHPLESKMHLHIQTKGE 111
>gi|395537015|ref|XP_003770503.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sarcophilus harrisii]
Length = 114
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +F + E+HT+GN LR + ++ V F GY + HP + KI RI T ++ +
Sbjct: 22 NCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKEGLPAVEPFR 81
Query: 89 QAINDL 94
Q +N+L
Sbjct: 82 QGLNEL 87
>gi|358387089|gb|EHK24684.1| hypothetical protein TRIVIDRAFT_31426 [Trichoderma virens Gv29-8]
Length = 155
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T ++ + A +
Sbjct: 66 AASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGTA-VNALKK 124
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 125 GLSDLQDVCDVVAEEF 140
>gi|380486342|emb|CCF38765.1| hypothetical protein CH063_09777 [Colletotrichum higginsianum]
Length = 140
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T ++ + A
Sbjct: 55 TAASFEFIDEGHTLGNALRFIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDGTA-VAALQ 113
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL DT+ F
Sbjct: 114 KGLKDLQALSDTVAEEF 130
>gi|427794155|gb|JAA62529.1| Putative rna polymerase i/iii 16kd polypeptide, partial
[Rhipicephalus pulchellus]
Length = 131
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F ++ ++HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ ++A + +
Sbjct: 43 TFVMDDQDHTLGNALRYMIMKNPEVRFCGYAIPHPSERKVHLRIETRGITA-VEALKKGL 101
Query: 92 NDLDKELDTLKSAFE 106
DL K + + FE
Sbjct: 102 QDLHKMSEHMLKEFE 116
>gi|400599076|gb|EJP66780.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Beauveria
bassiana ARSEF 2860]
Length = 156
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T + + + A +
Sbjct: 67 AASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNIRIQTY-EGTAIDALKK 125
Query: 90 AINDLDKELDTLKSAF 105
+ DL + D + F
Sbjct: 126 GLGDLQQVCDVVADEF 141
>gi|342865951|gb|EGU71952.1| hypothetical protein FOXB_17513 [Fusarium oxysporum Fo5176]
Length = 147
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S ++ + A +
Sbjct: 58 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTA-VDALKK 116
Query: 90 AINDLDKELDTLKSAF 105
+ D+ + D + F
Sbjct: 117 GLVDIQEVCDVVADEF 132
>gi|170595751|ref|XP_001902505.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
gi|158589782|gb|EDP28642.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
Length = 113
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 16 TKKVSYERDTKIINAASF---------TIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
T + ER +I++ SF + E+HTIGN L+ L + +V F GY +PHP
Sbjct: 2 TSLLDSERKVEILDVDSFRSDPSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHP 61
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
L+ KI++R+ T S + +L+ +++ F+
Sbjct: 62 LEDKILIRLQTKRGVSAASMLMKGFEELECIFASIRQKFD 101
>gi|449455052|ref|XP_004145267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
gi|449516242|ref|XP_004165156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 1 [Cucumis sativus]
gi|449516244|ref|XP_004165157.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 2 [Cucumis sativus]
Length = 108
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++F++ E+HT+ N LR L++D V F GY +PHP ++ +R+ TT
Sbjct: 12 STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
>gi|358399593|gb|EHK48930.1| hypothetical protein TRIATDRAFT_297692 [Trichoderma atroviride IMI
206040]
Length = 154
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T ++ + A +
Sbjct: 65 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGTA-VNALKK 123
Query: 90 AINDLDKELDTLKSAF 105
++DL D + F
Sbjct: 124 GLSDLQDVCDVVAEKF 139
>gi|46125119|ref|XP_387113.1| hypothetical protein FG06937.1 [Gibberella zeae PH-1]
Length = 146
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T S ++ + A +
Sbjct: 57 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSGTA-VDALKK 115
Query: 90 AINDLDKELDTLKSAF 105
+ D+ + D + F
Sbjct: 116 GLVDIQEVCDVVADEF 131
>gi|348672539|gb|EGZ12359.1| hypothetical protein PHYSODRAFT_361522 [Phytophthora sojae]
Length = 107
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ ++ E+HT+GN LR L R+ +V F GY +PHP + K+ +R+ T + +A
Sbjct: 18 SKTYVFHEEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEALRS 77
Query: 90 AINDLDK 96
+ DL K
Sbjct: 78 GLTDLRK 84
>gi|290983816|ref|XP_002674624.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
gi|284088215|gb|EFC41880.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
Length = 157
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS-SPMQAY 87
+ ++F +E HT+GN +R L +++ V F GY +PHPL+ K+ +R+ T + + +
Sbjct: 71 SVSTFIFHKESHTMGNSVRHMLMKNKKVSFCGYTVPHPLEAKMNLRLQTVGEKYTAKETL 130
Query: 88 NQAINDLDKELDTLKSAFE 106
+ + +L + +T+ S F+
Sbjct: 131 EEGLVNLQQVTETVMSKFD 149
>gi|410913427|ref|XP_003970190.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Takifugu rubripes]
Length = 122
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 14 EGTKKVSYER---DTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
EGT K E D +F + E+HT+GN LR + ++E+V F GY + HP + K
Sbjct: 4 EGTAKPVLEMVQADGADEGCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENK 63
Query: 71 IIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
I RI T + + ++DL + + + FE
Sbjct: 64 INFRIQTRGGVPAAEVLRKGLSDLHEVCQHVLNTFE 99
>gi|298706157|emb|CBJ49085.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 111
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 9 RFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQ 68
+F V EG+ +++A+F E+HT+GN LR L +++ V F GY +PHP +
Sbjct: 14 KFQVKEGSS----------LSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSE 63
Query: 69 YKIIVRIHTTSQSSPMQAYNQAINDL 94
K+ +R+ TT + + ++ + + DL
Sbjct: 64 PKMNLRLQTTGRPA-LELLKEGLRDL 88
>gi|70606015|ref|YP_254885.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449066211|ref|YP_007433293.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449068487|ref|YP_007435568.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
gi|1173166|sp|P46217.1|RPOL_SULAC RecName: Full=DNA-directed RNA polymerase subunit L
gi|912481|emb|CAA50072.1| RNA polymerase subunit L [Sulfolobus acidocaldarius]
gi|68566663|gb|AAY79592.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449034719|gb|AGE70145.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449036995|gb|AGE72420.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
Length = 90
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I+ EEHTIGN+L+ L + V FA Y LPHPL I ++I T S +A
Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>gi|224059388|ref|XP_002299838.1| predicted protein [Populus trichocarpa]
gi|222847096|gb|EEE84643.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++A+F E+HT+ N +R L++D V F GY +PHP K+ +R+ TT
Sbjct: 10 SSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTG 60
>gi|388495242|gb|AFK35687.1| unknown [Medicago truncatula]
Length = 115
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
++ ++F++ E+HT N +R L++D V F GY +PHP + ++ VR+ TT
Sbjct: 9 LSKSTFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTT 59
>gi|310789432|gb|EFQ24965.1| hypothetical protein GLRG_00109 [Glomerella graminicola M1.001]
Length = 141
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
AASF E HT+GN LR + ++ +V F Y +PHP + K+ +RI T ++ + A
Sbjct: 56 TAASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDGTA-VSALQ 114
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL DT+ F
Sbjct: 115 KGLKDLQALSDTVAEEF 131
>gi|340503209|gb|EGR29821.1| hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis]
Length = 143
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 8 ERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL 67
E+ P +K+ +++ K +A++ E+HT+GN LR L + ++V F GY +PHP
Sbjct: 33 EKTQKPLQEEKLVIDQNEKDKTSATYIFYDEDHTLGNALRYVLVKRKDVEFCGYTIPHPS 92
Query: 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ ++ +R+ T+S++S + ++++ L D L F
Sbjct: 93 ENRLNLRLQTSSKNSN-EVLKESLDSLAGLCDVLNDKF 129
>gi|449472913|ref|XP_004153732.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like, partial [Cucumis sativus]
Length = 59
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
++F++ E+HT+ N LR L++D V F GY +PHP ++ +R+ TT
Sbjct: 12 STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59
>gi|118349948|ref|XP_001008255.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila]
gi|89290022|gb|EAR88010.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila
SB210]
Length = 150
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
+K+ +++ K A++T E+HT+GN +R L + ++V F GY +PHP + K+ +R+
Sbjct: 47 EKLVIDQNEKDRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQ 106
Query: 77 TTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
T ++S + + ++ L D L F+
Sbjct: 107 TIKKNSN-EVLKEGLDSLAGLCDVLNDKFD 135
>gi|253745917|gb|EET01521.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 95
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
A+F I E+HT+GN +R L+ + +V FAGY +PHP + K+ +RI + +S+
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLNCNPDVSFAGYSVPHPAEPKLNLRIQSDIRSA 57
>gi|237823487|pdb|2WAQ|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823501|pdb|2WB1|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823502|pdb|2WB1|M Chain M, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462799|pdb|2Y0S|L Chain L, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|323462800|pdb|2Y0S|M Chain M, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|400260751|pdb|4AYB|L Chain L, Rnap At 3.2ang
gi|400260768|pdb|4B1O|L Chain L, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260778|pdb|4B1P|M Chain M, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814447|gb|ACL36497.1| RNA polymerase subunit 11 [Sulfolobus shibatae B12]
Length = 92
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>gi|342185977|emb|CCC95462.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343469253|emb|CCD17721.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 131
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNA D + E +V+ R T +AA+ T E+HT+GN LR L +D +V AG
Sbjct: 19 MNAGDEVD--TSAEQKVEVNIHRLTGADSAATVTFSHEDHTLGNPLRYVLMQDPDVTSAG 76
Query: 61 YKLPHPLQYKIIVRIHT 77
Y +PHPL+ K+ + + +
Sbjct: 77 YAIPHPLEAKMQLHVQS 93
>gi|158828223|gb|ABW81101.1| RNApol24 [Cleome spinosa]
Length = 109
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
A+F++ E+HT+ N +R L++D V F GY +PHP ++ +R+ TT
Sbjct: 12 ATFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTTG 60
>gi|374634177|ref|ZP_09706542.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
gi|373523965|gb|EHP68885.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
Length = 90
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 24 DTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
D + N + E+HT+GN+L L + V +A Y PHPL +I+++I T SP
Sbjct: 6 DKRSENYLELRLAGEDHTLGNLLAGALREVKGVSYASYYQPHPLNDEIVLKIMTDGTISP 65
Query: 84 MQAYNQAIN 92
++A N+A++
Sbjct: 66 LEALNKALD 74
>gi|340059083|emb|CCC53456.1| putative DNA-dependent RNA polymerases [Trypanosoma vivax Y486]
Length = 135
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 41/62 (66%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +R T+ +AA+ E+HT+GN LR L ++ V AGY +PHPL+ K+++ + +
Sbjct: 34 QINLQRLTETESAATVAFSHEDHTLGNSLRHVLMQNAQVTSAGYAIPHPLEEKMLLHVQS 93
Query: 78 TS 79
T+
Sbjct: 94 TA 95
>gi|227828072|ref|YP_002829852.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|227830809|ref|YP_002832589.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|229579705|ref|YP_002838104.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|229581629|ref|YP_002840028.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|229585341|ref|YP_002843843.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238620302|ref|YP_002915128.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284998323|ref|YP_003420091.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|385773780|ref|YP_005646347.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
gi|385776415|ref|YP_005648983.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|259494225|sp|C3MZG6.1|RPOL_SULIA RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494226|sp|C4KIP6.1|RPOL_SULIK RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494227|sp|C3MRD1.1|RPOL_SULIL RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494228|sp|C3MXM0.1|RPOL_SULIM RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494229|sp|C3NFY8.1|RPOL_SULIN RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494367|sp|C3N7I8.1|RPOL_SULIY RecName: Full=DNA-directed RNA polymerase subunit L
gi|227457257|gb|ACP35944.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|227459868|gb|ACP38554.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|228010420|gb|ACP46182.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|228012345|gb|ACP48106.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|228020391|gb|ACP55798.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238381372|gb|ACR42460.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284446219|gb|ADB87721.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|323475163|gb|ADX85769.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|323477895|gb|ADX83133.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
Length = 92
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>gi|449459084|ref|XP_004147276.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
Length = 104
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++F++ E+HT+ N LR L++D V F GY +PHP ++ +R+ TT
Sbjct: 12 STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
>gi|397630084|gb|EJK69633.1| hypothetical protein THAOC_09087 [Thalassiosira oceanica]
Length = 145
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 23 RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
R T + +F + E+HT+GN LR L D V FAGY +PHP + + +R+ T + S
Sbjct: 18 RGTGPDTSRTFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHIRVQTNTNSK 77
Query: 83 P 83
P
Sbjct: 78 P 78
>gi|413920766|gb|AFW60698.1| hypothetical protein ZEAMMB73_622044 [Zea mays]
Length = 106
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
+++F+I E+HT+ N R L++D V F GY +PHP + K+ +R+ TT ++
Sbjct: 11 SSTFSIMDEDHTLANSARFVLNQDPRVAFCGYTIPHPSEKKVNIRLQTTGDAA 63
>gi|351725297|ref|NP_001238111.1| uncharacterized protein LOC100500695 [Glycine max]
gi|255630968|gb|ACU15848.1| unknown [Glycine max]
Length = 107
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
++F++ E+HT N +R L++D V F GY +PHP ++ +R+ TT S + A
Sbjct: 12 STFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTTGDPS-REVLKDA 70
Query: 91 INDLDKELDTLKSAFE 106
DL ++S F+
Sbjct: 71 CQDLMLMCQHVRSTFD 86
>gi|344245738|gb|EGW01842.1| Ras GTPase-activating protein 4 [Cricetulus griseus]
Length = 1179
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQL----HRDENVLFAGYK 62
Y + E +++ +DTK+ NA FTI +E+HT+GNI++ + + G +
Sbjct: 1075 YRHLLGVEAALRITINKDTKVPNACLFTINKEDHTLGNIIKSGSCSVDWTQTDSPYHGCR 1134
Query: 63 LPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
P HTT SP +A+ AI DL EL L+ F
Sbjct: 1135 DPG----------HTTPDYSPQEAFTNAITDLISELSLLEERF 1167
>gi|357461253|ref|XP_003600908.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355489956|gb|AES71159.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 218
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++ ++F++ E+HT N +R L++D V F GY +PHP + ++ VR+ TT
Sbjct: 112 LSKSTFSLVNEDHTFSNSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTTG 163
>gi|116781945|gb|ABK22308.1| unknown [Picea sitchensis]
gi|224285983|gb|ACN40703.1| unknown [Picea sitchensis]
Length = 107
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+++F E+HT+GN LR L+ D V F GY +PHP ++ +R+ TT
Sbjct: 11 SSTFAFNDEDHTLGNSLRYVLNHDPRVEFCGYSIPHPSDNRVNIRVQTTG 60
>gi|242025436|ref|XP_002433130.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
gi|212518671|gb|EEB20392.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F + E HT+GN LR + R V F GY +PHP + KI RI TS + + + +
Sbjct: 18 TFVFDGEGHTLGNALRSVISRYSEVTFCGYTIPHPSEEKINFRIQ-TSGARAVDILKKGL 76
Query: 92 NDLDKELDTLKSAF 105
DL++ + + + F
Sbjct: 77 TDLEEHCEYIMNVF 90
>gi|296241786|ref|YP_003649273.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
gi|296094370|gb|ADG90321.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
Length = 92
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 25 TKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPM 84
TK N + I+ E+HT+GN+L + R V++A Y++PHPL+ +I I +
Sbjct: 7 TKTSNHLAIKIKGEDHTLGNLLMKEALRHPKVVYASYRVPHPLREEIEFVITVQEGTDVG 66
Query: 85 QAYNQAINDLDKELDTLKSAFE 106
+ + + + +EL KSA E
Sbjct: 67 EVLREIVGGIKRELSDFKSAVE 88
>gi|327277356|ref|XP_003223431.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Anolis carolinensis]
Length = 116
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + +D V F GY + HP + KI RI T + +
Sbjct: 24 SCVTFVLHNEDHTLGNSLRYMIMKDPEVEFCGYSITHPSESKINFRIQTKGGIPAAEMFQ 83
Query: 89 QAINDLDKELDTLKSAFE 106
+ + +L + S FE
Sbjct: 84 KGLEELIGVCQHVLSTFE 101
>gi|295668907|ref|XP_002795002.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285695|gb|EEH41261.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVL------------FAGYKLPHPLQYKIIVRIH 76
A SF +RE+HT+GN LR + ++ L F GY +PHP + K+ +RI
Sbjct: 80 TAVSFQFDREDHTLGNALRYVIMKNPKFLTYSSIIRSPEVEFCGYTMPHPSEAKMNLRIQ 139
Query: 77 TTSQSSPMQAYNQAINDLDKELDTLKSAF 105
T ++ + + +DL D + F
Sbjct: 140 TYETTTAIAVLEKGFDDLMDLCDVVTETF 168
>gi|224006698|ref|XP_002292309.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220971951|gb|EED90284.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 83
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS-SPMQAYNQA 90
+F + E+HT+GN LR L D V FAGY +PHP + + +R+ T + + ++A +A
Sbjct: 4 TFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHLRVQTNEKPLTAIEALKEA 63
Query: 91 INDLDKELD 99
+ L K+ D
Sbjct: 64 CSTLSKQCD 72
>gi|358054588|dbj|GAA99514.1| hypothetical protein E5Q_06215 [Mixia osmundae IAM 14324]
Length = 171
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+++A+F I E+HT+GN LR + ++ V F GY PHP + KI +RI S +A
Sbjct: 25 MSSATFCILEEDHTLGNALRYMIMKNPQVQFCGYSQPHPSEDKIHLRIQMYDGLSAYEAL 84
Query: 88 NQAINDLD 95
+ L+
Sbjct: 85 QSGLASLE 92
>gi|357502661|ref|XP_003621619.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355496634|gb|AES77837.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 115
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
++ ++F++ E+HT N +R L++D V F GY +PHP + ++ VR+ TT
Sbjct: 9 LSKSTFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTT 59
>gi|154311455|ref|XP_001555057.1| hypothetical protein BC1G_06580 [Botryotinia fuckeliana B05.10]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
AASF ++E+HT+GN LR + ++ +V F GY +PHP + + +RI T
Sbjct: 61 AASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQT 108
>gi|346971331|gb|EGY14783.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
dahliae VdLs.17]
Length = 146
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E HT+GN LR + ++ +V F Y +PHP + + +RI T ++ + A ++
Sbjct: 58 AASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDGTA-VSALSK 116
Query: 90 AINDLDKELDTLKSAF 105
+ DL D + F
Sbjct: 117 GLKDLQGLCDVMTDEF 132
>gi|402588033|gb|EJW81967.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein,
partial [Wuchereria bancrofti]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
E+HTIGN L+ L + +V F GY +PHPL+ KI++R+ T S + +L+
Sbjct: 30 EDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVSAANTLMKGFEELESI 89
Query: 98 LDTLKSAF 105
+++ F
Sbjct: 90 FASIRQKF 97
>gi|118790581|ref|XP_318678.2| AGAP009644-PA [Anopheles gambiae str. PEST]
gi|116118014|gb|EAA14103.3| AGAP009644-PA [Anopheles gambiae str. PEST]
Length = 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E E HT+GN+L+ + + +V F GY +PHP + K+ RI + + +
Sbjct: 19 TFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAAKSVRAIDVLRRGL 78
Query: 92 NDLDKELDTLKSAFE 106
DL++ D FE
Sbjct: 79 EDLERVCDHTIDTFE 93
>gi|6677791|ref|NP_033113.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1 [Mus
musculus]
gi|11387094|sp|P97304.1|RPAC2_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16
gi|1778684|dbj|BAA13139.1| RPA16 [Mus musculus]
gi|12833069|dbj|BAB22376.1| unnamed protein product [Mus musculus]
gi|148673878|gb|EDL05825.1| RNA polymerase 1-3, isoform CRA_a [Mus musculus]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQKGLNEL 103
>gi|212546345|ref|XP_002153326.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064846|gb|EEA18941.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 100
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
AASF + E HT+GN LR + ++ V F GY +PHP + K+ +RI T
Sbjct: 43 AASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQT 90
>gi|149034849|gb|EDL89569.1| rCG42593, isoform CRA_b [Rattus norvegicus]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQKGLNEL 103
>gi|357605525|gb|EHJ64656.1| hypothetical protein KGM_09653 [Danaus plexippus]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP-MQA 86
+ ++ + E HT+GN L+ + R E+V F GY +PHP + K+ RI T Q +P +
Sbjct: 17 LTCRTYVFQNESHTLGNALKCIIDRYEDVQFCGYTVPHPAEAKMHFRIQT--QETPTLDI 74
Query: 87 YNQAINDLDKELDTLKSAFE 106
+ + DL K + FE
Sbjct: 75 LKRGLTDLQKVCEHTIDLFE 94
>gi|302410981|ref|XP_003003324.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
gi|261358348|gb|EEY20776.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
Length = 146
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
AASF + E HT+GN LR + ++ +V F Y +PHP + + +RI T ++ + A ++
Sbjct: 58 AASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDGTA-VSALSK 116
Query: 90 AINDLDKELDTLKSAF 105
+ DL D + F
Sbjct: 117 GLKDLQGLCDVMTDEF 132
>gi|354468533|ref|XP_003496707.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cricetulus griseus]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGTLPAVEPFQKGLNEL 103
>gi|221113159|ref|XP_002160299.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Hydra magnipapillata]
Length = 127
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+F E+HTIGN LR + ++ V + GY PHP + KI +RI T ++P A +
Sbjct: 26 CQTFVFHNEDHTIGNSLRYMIMKNPEVQYCGYSNPHPSEPKINLRIQTHKIAAP-DALQK 84
Query: 90 AINDLDKELDTLKSAFE 106
+ DL D + + F+
Sbjct: 85 GLLDLQNVCDHVLATFQ 101
>gi|170029538|ref|XP_001842649.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
gi|167863233|gb|EDS26616.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
Length = 104
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E E HT+GN+L+ + + +V F GY +PHP + K+ RI + + +
Sbjct: 19 TFVFEDEGHTLGNVLKSIICKYSDVNFCGYTVPHPAENKMHFRIQAARNVRAIDVLRRGL 78
Query: 92 NDLDKELDTLKSAFE 106
DL++ D FE
Sbjct: 79 EDLERVCDHTIETFE 93
>gi|154321049|ref|XP_001559840.1| hypothetical protein BC1G_01399 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 45 ILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSA 104
+LR L +D +V+F+GYK+PHPL K +RI T + +P +A +L EL+
Sbjct: 1 MLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQTDGEITPKEALVACCRNLVSELEVFSRE 60
Query: 105 F 105
F
Sbjct: 61 F 61
>gi|145535985|ref|XP_001453720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421453|emb|CAK86323.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 11 VVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
++ + K + + ++ N +F E+HT+GN LR L NV F GY LPHP + K
Sbjct: 23 ILAQANKGMEIQENSDPFNG-TFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENK 81
Query: 71 IIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ +R+ T +++ + N + L + D ++ F
Sbjct: 82 MNMRLQTVNETKE-KVMNDGLKCLSQICDIIEDKF 115
>gi|145541556|ref|XP_001456466.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424278|emb|CAK89069.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 11 VVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
++ + TK + + + N +F E+HT+GN LR L NV F GY LPHP + K
Sbjct: 23 ILAQATKGMEIQEHSDPFNG-TFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENK 81
Query: 71 IIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ +R+ T +++ + N + L + D ++ F
Sbjct: 82 MNMRLQTVNETKE-KIMNDGLKCLSQICDIIEDKF 115
>gi|301112645|ref|XP_002998093.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112387|gb|EEY70439.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 107
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ ++ E+HT+GN +R L R+ +V F GY +PHP + K+ +R+ T + +A
Sbjct: 18 SKTYVFHEEDHTLGNAVRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGALADEALRS 77
Query: 90 AINDLDK 96
+ DL K
Sbjct: 78 GLTDLRK 84
>gi|344237268|gb|EGV93371.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Cricetulus
griseus]
Length = 116
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 1 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 56
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 57 HPSESKINLRIQTRGTLPAVEPFQKGLNEL 86
>gi|383872945|ref|NP_001244388.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|355700890|gb|EHH28911.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|380787579|gb|AFE65665.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|383413361|gb|AFH29894.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|384942556|gb|AFI34883.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGTLPAVEPFQRGLNEL 103
>gi|296479321|tpg|DAA21436.1| TPA: polymerase (RNA) I polypeptide D-like [Bos taurus]
Length = 133
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + + DL
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGVTDL 103
>gi|83286192|ref|XP_730053.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23489608|gb|EAA21618.1| RNA polymerases L / 13 to 16 kDa subunit, putative [Plasmodium
yoelii yoelii]
Length = 117
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
FTI+ E+HT+GN+++ L +D V FA Y+ PHPLQ +I + I + ++ + ++
Sbjct: 14 FTIKLEDHTLGNLIKQSLCQDPKVTFAAYRQPHPLQNEIEITIRPKGYAG-VKLLSDNVH 72
Query: 93 DLDKELDTLKSAF 105
+ ++ TL+ F
Sbjct: 73 TILNQVSTLRETF 85
>gi|7705740|ref|NP_057056.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Homo sapiens]
gi|410047658|ref|XP_003952423.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Pan troglodytes]
gi|426375009|ref|XP_004054344.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gorilla gorilla gorilla]
gi|441624152|ref|XP_004088972.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Nomascus leucogenys]
gi|11387119|sp|Q9Y2S0.1|RPAC2_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16; AltName: Full=RPC16; AltName:
Full=hRPA19
gi|4689136|gb|AAD27777.1|AF077044_1 RNA polymerase I 16 kDa subunit [Homo sapiens]
gi|12654143|gb|AAH00889.1| Polymerase (RNA) I polypeptide D, 16kDa [Homo sapiens]
gi|119628820|gb|EAX08415.1| hCG2020048, isoform CRA_a [Homo sapiens]
gi|208968663|dbj|BAG74170.1| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]
gi|410217740|gb|JAA06089.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410304014|gb|JAA30607.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410334477|gb|JAA36185.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGTLPAVEPFQRGLNEL 103
>gi|291410364|ref|XP_002721466.1| PREDICTED: polymerase (RNA) I polypeptide D [Oryctolagus cuniculus]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLNEL 103
>gi|345790282|ref|XP_003433343.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Canis lupus familiaris]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLNEL 103
>gi|388497488|gb|AFK36810.1| unknown [Lotus japonicus]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
++F++ E+HT N +R L++D V F GY +PHP ++ +R+ TT +
Sbjct: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGE 61
>gi|444518031|gb|ELV11918.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Tupaia
chinensis]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLNEL 103
>gi|83771710|dbj|BAE61840.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 152
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLF----------AGYKLPHPLQYKIIVRIHTT 78
AASF E E HT+GN LR + + +LF GY +PHP + K+ +RI T
Sbjct: 49 TAASFQFEGEGHTLGNALRYAIMKKCVLLFIVSVVDIVEFCGYTIPHPSETKMNLRIQTY 108
Query: 79 SQSSPMQAYNQAINDLDKELDTLKSAF 105
++ ++A + ++ L D + F
Sbjct: 109 DTTNAVEALEKGLDSLMDLCDVVTDKF 135
>gi|281344161|gb|EFB19745.1| hypothetical protein PANDA_016989 [Ailuropoda melanoleuca]
Length = 125
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 10 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 65
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 66 HPSESKINLRIQTRGALPAVEPFQRGLNEL 95
>gi|66802584|ref|XP_635164.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
gi|74851461|sp|Q54ES6.1|RPC19_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit
rpc19
gi|60463480|gb|EAL61665.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
Length = 116
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ A+F E+HT+GN L L ++ V F+GY +PHP ++ +RI T S + ++
Sbjct: 34 DCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLL 93
Query: 89 QAINDL 94
Q + D+
Sbjct: 94 QGLTDI 99
>gi|296203610|ref|XP_002748958.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Callithrix jacchus]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLNEL 103
>gi|432117377|gb|ELK37721.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Myotis
davidii]
Length = 123
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 8 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 63
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 64 HPSESKINLRIQTRGALPAVEPFQRGLNEL 93
>gi|410947157|ref|XP_003980319.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Felis catus]
Length = 116
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 1 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 56
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 57 HPSESKINLRIQTRGTLPAVEPFQRGLNEL 86
>gi|338715260|ref|XP_003363239.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I
and III subunit RPAC2-like [Equus caballus]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 11 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 66
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 67 HPSESKINLRIQTRGTLPAVEPFQRGLNEL 96
>gi|430811896|emb|CCJ30651.1| unnamed protein product [Pneumocystis jirovecii]
Length = 124
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+ + +F I +E+HT+ N LR + ++ +V F GY +PHP + + RI T S + +
Sbjct: 28 LTSVTFQIIKEDHTLANALRYIVMKNPDVEFCGYSIPHPSEPTLNFRIQTFRNISAVDVF 87
Query: 88 NQAINDLDKELDTLKSAFE 106
+ ++DL D + F+
Sbjct: 88 IKGLDDLVALCDHVADTFQ 106
>gi|300175414|emb|CBK20725.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
KV Y I + +F E HT+GN +R + + E V F GY +PHP++ K+ +R+ T
Sbjct: 11 KVEY--GVGINTSRTFVFYNEGHTLGNPIRTIMMQQEGVEFCGYSVPHPVEAKMHLRVQT 68
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
T +++ +A + + + D + +E
Sbjct: 69 TGENAT-EALIKGLRTFEHICDVIGDRYE 96
>gi|301783617|ref|XP_002927225.1| PREDICTED: hypothetical protein LOC100471798 [Ailuropoda
melanoleuca]
Length = 324
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 14 EGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY HP
Sbjct: 211 EGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHP 266
Query: 67 LQYKIIVRIHTTSQSSPMQAYNQAINDL 94
+ KI +RI T ++ + + +N+L
Sbjct: 267 SESKINLRIQTRGALPAVEPFQRGLNEL 294
>gi|260812261|ref|XP_002600839.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
gi|229286129|gb|EEN56851.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
Length = 110
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+ +F + E+HT+GN LR + ++ +V F GY +PHP ++KI +RI +
Sbjct: 9 SCQTFVLHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQS 57
>gi|145546486|ref|XP_001458926.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426748|emb|CAK91529.1| unnamed protein product [Paramecium tetraurelia]
Length = 97
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
NA + E+ TIGN+LR L + + V F+ + HPLQ+ I +++ T P A
Sbjct: 3 NACCVKLILEDRTIGNLLRTNLLKQKEVTFSRQRQIHPLQHTIEIKVKTKGTIKPYDAIE 62
Query: 89 QAINDLDKELDTLKSAF 105
+ + DL +E L+ +
Sbjct: 63 KTLKDLSEEFKNLEDEW 79
>gi|115497472|ref|NP_001069612.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos taurus]
gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=DNA-directed RNA polymerase I subunit D
gi|92096988|gb|AAI14906.1| Polymerase (RNA) I polypeptide D, 16kDa [Bos taurus]
gi|296481744|tpg|DAA23859.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC2 [Bos
taurus]
gi|440900647|gb|ELR51729.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos grunniens
mutus]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + + DL
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLTDL 103
>gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769 [Aureococcus anophagefferens]
Length = 74
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E+HT+GN LR L R + FAGY +PHP + + VR+ TT + + + + +
Sbjct: 1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPA-LAVMDDGL 59
Query: 92 NDLDKELDTLKSAFE 106
L D+L E
Sbjct: 60 AQLSSICDSLTGQLE 74
>gi|148232551|ref|NP_001088155.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Xenopus
laevis]
gi|82180681|sp|Q5XK67.1|RPAC2_XENLA RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|52789423|gb|AAH83053.1| LOC494863 protein [Xenopus laevis]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + ++ V F GY + HP + KI RI T + ++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 89 QAINDLDKELDTLKSAFE 106
+ +N+L + + FE
Sbjct: 82 RGLNELVDVCQHVLNTFE 99
>gi|395850165|ref|XP_003797668.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Otolemur garnettii]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHDEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLNEL 103
>gi|356573936|ref|XP_003555110.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Glycine max]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
++F++ E+HT N +R L++D V F GY +PHP ++ +R+ TT
Sbjct: 12 STFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
>gi|321478705|gb|EFX89662.1| hypothetical protein DAPPUDRAFT_40279 [Daphnia pulex]
Length = 86
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F + E HT+GN +R + ++ +V+F GY +PHP + K+ +RI T S S+ + A + +
Sbjct: 3 TFIFKGEGHTLGNAIRTIILKNPDVIFCGYTIPHPSENKLHLRIETKSISA-IDALREGL 61
Query: 92 NDLDKELDTLKSAFEFL 108
L D + FE +
Sbjct: 62 EQLQNLSDHILKTFEVV 78
>gi|157107641|ref|XP_001649871.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|157131975|ref|XP_001662388.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|108868667|gb|EAT32892.1| AAEL014869-PA [Aedes aegypti]
gi|108871328|gb|EAT35553.1| AAEL012284-PA [Aedes aegypti]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E E HT+GN+L+ + + +V F GY +PHP + K+ RI + + +
Sbjct: 19 TFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAARNVRAIDILKRGL 78
Query: 92 NDLDKELDTLKSAFE 106
DL++ D FE
Sbjct: 79 EDLERVCDHTIETFE 93
>gi|348536761|ref|XP_003455864.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oreochromis niloticus]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 14 EGTKKVSYE---RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYK 70
EG KK E D +F + E+HT+GN LR + ++ +V F GY + HP + K
Sbjct: 4 EGEKKAVLEMVQADGADEGCVTFVLHDEDHTLGNSLRYMIMKNADVEFCGYTITHPSESK 63
Query: 71 IIVRIHTTSQSSPMQAYNQAINDL 94
I RI T + + +N+L
Sbjct: 64 INFRIQTRGGIPAAEPLRRGLNEL 87
>gi|302678017|ref|XP_003028691.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
gi|300102380|gb|EFI93788.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
Length = 112
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
AA++ I E HT+GN LR + ++ NV F GY PHP + I VRI
Sbjct: 21 AATYQIYDESHTLGNALRWMIMKNPNVEFCGYSAPHPSENVINVRI 66
>gi|15227556|ref|NP_180514.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|79323435|ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|1184686|gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis
thaliana]
gi|1184688|gb|AAC49454.1| Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit
[Arabidopsis thaliana]
gi|3980382|gb|AAC95185.1| DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14) [Arabidopsis
thaliana]
gi|26452894|dbj|BAC43525.1| putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14
[Arabidopsis thaliana]
gi|28827296|gb|AAO50492.1| putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|330253175|gb|AEC08269.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|330253176|gb|AEC08270.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
Length = 122
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++ ASFT+ E+HT+ N +R L++D V A Y +PHP ++ +R+ TT + + +
Sbjct: 9 VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 67
Query: 88 NQAINDLDKELDTLKSAFE 106
A +L + ++S F+
Sbjct: 68 KDACQELMQMNRHVRSVFD 86
>gi|281200289|gb|EFA74510.1| putative RNA polymerase III subunit [Polysphondylium pallidum
PN500]
Length = 130
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ A+F E+HT+GN L L ++ V F+GY +PHP K+ +RI T ++ A
Sbjct: 26 DCATFIFVDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNKMNLRIQTKGNTTAQDAIM 85
Query: 89 QAINDL 94
++D+
Sbjct: 86 NGLSDI 91
>gi|431920979|gb|ELK18748.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Pteropus
alecto]
Length = 123
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 8 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 63
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 64 HPSESKINLRIQTRGVLPAIEPFQRGLNEL 93
>gi|312070093|ref|XP_003137987.1| hypothetical protein LOAG_02401 [Loa loa]
gi|307766855|gb|EFO26089.1| hypothetical protein LOAG_02401 [Loa loa]
Length = 113
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
E+HTIGN L+ L + +V F GY +PHPL+ KI++R+ T + +L+
Sbjct: 33 EDHTIGNSLKHILCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVPAADVLMKGFEELECI 92
Query: 98 LDTLKSAFE 106
+++ F+
Sbjct: 93 FGSIRQKFD 101
>gi|71756079|ref|XP_828954.1| DNA-dependent RNA polymerases [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834340|gb|EAN79842.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334881|emb|CBH17875.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei
gambiense DAL972]
Length = 134
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +R +AA+ T E+HT+GN LR + D +V AGY +PHPL+ K+ ++H
Sbjct: 34 ELNLQRHADSESAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKM--QLHV 91
Query: 78 TSQSSPMQAYNQAINDLDKELD-TLKS 103
S ++ + + L D TLKS
Sbjct: 92 QSSEYAVETVAKGLERLAAICDETLKS 118
>gi|432880437|ref|XP_004073697.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oryzias latipes]
Length = 142
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++
Sbjct: 22 DCVTFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGVPAVEPLQ 81
Query: 89 QAINDL 94
+ ++DL
Sbjct: 82 KGLSDL 87
>gi|367025619|ref|XP_003662094.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
gi|347009362|gb|AEO56849.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
Length = 116
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQA-- 86
N + F + +E+HT+GN+L L +V+ AGYK+ HP ++++R+ T +P +A
Sbjct: 3 NCSDFILLKEDHTLGNLLSAYLKMAPHVMMAGYKIGHPNVPEVLIRVQTDGTITPREALV 62
Query: 87 ---------YNQAINDLDKEL 98
Y Q + KEL
Sbjct: 63 TVCKQLVAMYGQLGREFQKEL 83
>gi|154414194|ref|XP_001580125.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121914339|gb|EAY19139.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 101
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS------- 81
++ S E +T+GN LR + ++ V F GY +PHP + K+ +R+
Sbjct: 16 SSGSMLFTGETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQADDDEKITDIVL 75
Query: 82 SPMQAYNQAINDLDKELDTLKSAFE 106
S + + Q N+ + E D SAF+
Sbjct: 76 SGISDFKQWCNNTETEFDNAWSAFQ 100
>gi|297822669|ref|XP_002879217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325056|gb|EFH55476.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
ASFT+ E+HT+ N +R L++D V A Y +PHP ++ +R+ TT + + + A
Sbjct: 12 ASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVFKDA 70
Query: 91 INDLDKELDTLKSAFE 106
+L + ++S F+
Sbjct: 71 CQELMQMNRHVRSVFD 86
>gi|213512884|ref|NP_001134696.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
gi|209735308|gb|ACI68523.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
gi|303657411|gb|ADM15874.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
Length = 115
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++
Sbjct: 23 GCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLR 82
Query: 89 QAINDL 94
+ +N+L
Sbjct: 83 RGLNEL 88
>gi|156378249|ref|XP_001631056.1| predicted protein [Nematostella vectensis]
gi|156218089|gb|EDO38993.1| predicted protein [Nematostella vectensis]
Length = 85
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + ++ +V F GY +PHP + KI +RI T +
Sbjct: 3 SCMTFVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQTHGTPAS-DVLR 61
Query: 89 QAINDLDKELDTLKSAFE 106
+ +++L + +AFE
Sbjct: 62 RGLSELTAMCEHALAAFE 79
>gi|51468043|ref|NP_001003888.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Danio rerio]
gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|49619017|gb|AAT68093.1| RNA polymerase I polypeptide D [Danio rerio]
gi|133777915|gb|AAI15139.1| Zgc:136449 protein [Danio rerio]
Length = 112
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + + ++V F GY + HP + KI RI T +
Sbjct: 21 GCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLR 80
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
+N+L D K + +A
Sbjct: 81 NGLNNL---TDVCKHVLQTFEA 99
>gi|223646456|gb|ACN09986.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
gi|223672303|gb|ACN12333.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
Length = 102
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++
Sbjct: 10 GCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLR 69
Query: 89 QAINDL 94
+ +N+L
Sbjct: 70 RGLNEL 75
>gi|302663304|ref|XP_003023296.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
gi|291187286|gb|EFE42678.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
Length = 135
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 27 IINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQA 86
+ + A FT +E+HT+GN++R +L ++++VLF+GY+ T Q +P +A
Sbjct: 48 VPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYR--------------TDGQITPKEA 93
Query: 87 YNQAINDLDKELDTLKSAF 105
A +DL K+L T F
Sbjct: 94 VLAACHDLVKDLGTFSREF 112
>gi|238231741|ref|NP_001154057.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
Length = 115
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + + +V F GY + HP + KI RI T ++
Sbjct: 23 GCVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLR 82
Query: 89 QAINDL 94
+ +N+L
Sbjct: 83 RGLNEL 88
>gi|325186683|emb|CCA21232.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 897
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ ++ E+HT+GN LR L R+ V F GY +PHP + K+ +R+ T + + +
Sbjct: 33 SKTYVFHDEDHTLGNALRYILMRNPKVEFCGYTIPHPSEPKMHLRLQTQKDVASDEVLRE 92
Query: 90 AINDLDK 96
+ DL K
Sbjct: 93 GLQDLYK 99
>gi|219119219|ref|XP_002180374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407847|gb|EEC47782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
+F I E+HT+GN +R L R+ ++ FAGY +PHP + + +R+ T + +
Sbjct: 4 TFCIGDEDHTLGNAVRHVLIRNNSIGFAGYSVPHPSEPVVQIRVQTVAPAG 54
>gi|88687070|emb|CAJ43896.1| RNA polymerase I subunit RPC19 [Trypanosoma brucei brucei]
Length = 134
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ +R +AA+ T E+HT+GN LR + D +V AGY +PHPL+ K+ + + +
Sbjct: 34 ELNLQRHADSESAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQS 93
Query: 78 T 78
+
Sbjct: 94 S 94
>gi|335296765|ref|XP_003357859.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sus scrofa]
Length = 133
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + + +L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLTEL 103
>gi|426236489|ref|XP_004012200.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Ovis aries]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 8 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 63
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + + +L
Sbjct: 64 HPSESKINLRIQTRGALPAVEPFQRGLTEL 93
>gi|294942414|ref|XP_002783512.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239896009|gb|EER15308.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 256
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
++ ++ E+HT+GN +R L ++ V FAGY +PHP + + +R+ T + ++
Sbjct: 8 CGTYQLKNEDHTLGNSVRYVLAKNPKVDFAGYSVPHPNEPFVNIRVQTYPGMTADESMIW 67
Query: 90 AINDLDKELDTLK 102
A+ +LD +T++
Sbjct: 68 ALEELDVMFNTIQ 80
>gi|47187235|emb|CAG14790.1| unnamed protein product [Tetraodon nigroviridis]
Length = 60
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
+F + E+HT+GN LR + ++E+V F GY + HP + KI RI T +
Sbjct: 9 GCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRGK 60
>gi|301615272|ref|XP_002937095.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Xenopus (Silurana) tropicalis]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + ++ ++ F GY + HP + KI RI T + ++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 89 QAINDLDKELDTLKSAFE 106
+ + +L + + FE
Sbjct: 82 RGLTELVDVCQHVLNTFE 99
>gi|146092259|ref|XP_001470246.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|398018276|ref|XP_003862319.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
gi|134085040|emb|CAM69441.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|322500548|emb|CBZ35625.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
Length = 137
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + A T E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 35 QIDLQRITDNESTAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKML--LHV 92
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++A + + L + D S+F+
Sbjct: 93 QASDYAVEAVAKGLERLAEICDDTISSFD 121
>gi|225716362|gb|ACO14027.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Esox lucius]
Length = 114
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + ++ +V F GY + HP + KI RI T ++
Sbjct: 23 GCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGAVPAVEPLR 82
Query: 89 QAINDLDKELDTLKSAFE 106
+ + +L + + FE
Sbjct: 83 RGLTELTDLCQHVLNTFE 100
>gi|71421443|ref|XP_811802.1| DNA-directed RNA polymerase I/III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70876509|gb|EAN89951.1| DNA-directed RNA polymerase I/III subunit, putative [Trypanosoma
cruzi]
Length = 134
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + + E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 34 QIELQRLTDSESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKML--LHV 91
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
S ++A + + L D +FE
Sbjct: 92 QSTDYAVEAVAEGLERLASICDETLQSFE 120
>gi|154340595|ref|XP_001566254.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063573|emb|CAM39755.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 137
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + A T E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 35 QIDLQRVTDSESTAVVTFSHEDHTLGNPLRHVLMQNVAVTSAGYAIPHPLEPKML--LHV 92
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++A + L + D S+F+
Sbjct: 93 QASDYAVEAVAHGLERLAEICDDTISSFD 121
>gi|389860778|ref|YP_006363018.1| DNA-directed RNA polymerase subunit L [Thermogladius cellulolyticus
1633]
gi|388525682|gb|AFK50880.1| DNA-directed RNA polymerase subunit L [Thermogladius cellulolyticus
1633]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I+ E+HT+GN+L + D V ++ Y++PHPLQ ++ + + T P++
Sbjct: 11 NELVIEIQGEDHTLGNLLAKEALLDPRVEYSAYRIPHPLQERMELTLVTKQGEDPLKVLV 70
Query: 89 QAINDLDKELDTLKSAFE 106
+ I+ L ++ +S E
Sbjct: 71 EIIDKLVGDIRAFRSLVE 88
>gi|241121691|ref|XP_002403305.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
gi|215493414|gb|EEC03055.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
Length = 109
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
++ ++ ++HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +A +
Sbjct: 17 CRTYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRDITAD-EALKK 75
Query: 90 AINDLDKELDTLKSAFE 106
+ DL + + + FE
Sbjct: 76 GLQDLHQMSEHILKVFE 92
>gi|57641102|ref|YP_183580.1| DNA-directed RNA polymerase subunit L [Thermococcus kodakarensis
KOD1]
gi|73917889|sp|Q5JE88.1|RPOL_PYRKO RecName: Full=DNA-directed RNA polymerase subunit L
gi|57159426|dbj|BAD85356.1| DNA-directed RNA polymerase, subunit L [Thermococcus kodakarensis
KOD1]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL------QYKIIVRIHTTSQSS 82
N F +E E+HT N+L LH +E+V FAGY + HP+ ++K++ T + +
Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70
Query: 83 PMQAYNQAINDLDKELDTLKSAFE 106
+A + + + L+ K+A E
Sbjct: 71 LEEAAQKIFDRAREVLEAWKAAIE 94
>gi|71416664|ref|XP_810336.1| DNA-dependent RNA polymerases [Trypanosoma cruzi strain CL Brener]
gi|70874850|gb|EAN88485.1| DNA-dependent RNA polymerases, putative [Trypanosoma cruzi]
Length = 134
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + + E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 34 QIELQRLTDSESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKML--LHV 91
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
S ++A + + L D +FE
Sbjct: 92 QSTDYAVEAVAEGLERLASICDETLQSFE 120
>gi|442747853|gb|JAA66086.1| Putative rna polymerase i/iii 16kd polypeptide [Ixodes ricinus]
Length = 110
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
++ ++ ++HT+GN LR + ++ V F GY +PHP + K+ +RI T ++ +A +
Sbjct: 18 CRTYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRDITAD-EALKK 76
Query: 90 AINDLDKELDTLKSAFE 106
+ DL + + + FE
Sbjct: 77 GLQDLHQMSEHILKVFE 93
>gi|401425126|ref|XP_003877048.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493292|emb|CBZ28577.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 137
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + A T E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 35 QIDLQRITDNESTAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKML--LHV 92
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++A + L + D S+F+
Sbjct: 93 QASDYAVEAVAMGLERLAEICDDTISSFD 121
>gi|390960482|ref|YP_006424316.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
gi|390518790|gb|AFL94522.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH +E+V FAGY + HP + K R+ T + +P +A
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPILMARKPRFRVVTDGKVTPEKA 70
Query: 87 YNQAINDL-DKE---LDTLKSA 104
+A + D+ LD K+A
Sbjct: 71 LEEAAQKIFDRARAVLDAWKNA 92
>gi|409095587|ref|ZP_11215611.1| DNA-directed RNA polymerase subunit L [Thermococcus zilligii AN1]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH DE+V FA Y + HP + K ++ T + SP +A
Sbjct: 11 NKLEFYLEGEDHTFANLLVEVLHEDEHVKFAAYSIDHPILMARKPKFKVVTDGKESPEEA 70
Query: 87 YNQAINDLDKELDTLKSAFE 106
+A + + + AFE
Sbjct: 71 LGKAAQKI---FERAREAFE 87
>gi|212223525|ref|YP_002306761.1| DNA-directed RNA polymerase subunit L [Thermococcus onnurineus
NA1]
gi|229564250|sp|B6YTH7.1|RPOL_THEON RecName: Full=DNA-directed RNA polymerase subunit L
gi|212008482|gb|ACJ15864.1| DNA-directed RNA polymerase, subunit L [Thermococcus onnurineus
NA1]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH +E+V FAGY + HP + K R+ T + +P Q
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQV 70
Query: 87 YNQA 90
+A
Sbjct: 71 LEEA 74
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
A+FT E+HT+G LR + RDE+V F GY +PHPL+ I I S A
Sbjct: 403 ATFTFFGEDHTLGLALRYCILRDESVSFCGYCVPHPLEDMINFDIQMKKGS--------A 454
Query: 91 INDLDKELDTLKSAFEFL 108
I+ L L L+ F+ +
Sbjct: 455 IDALRNGLQCLRDCFQHM 472
>gi|345481326|ref|XP_001604778.2| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Nasonia vitripennis]
Length = 107
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F + E HT+GN+LR + +V F GY +PHP + K+ RI + + + +
Sbjct: 19 TFVFQDEGHTLGNVLRSIVAHYPDVEFCGYTVPHPAEAKMHFRIQ-AKKGRAVDILRRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL K D FE
Sbjct: 78 EDLSKVCDHTIKTFE 92
>gi|223478516|ref|YP_002583385.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
gi|214033742|gb|EEB74568.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
Length = 98
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH DE+V FA Y + HP + K +I T + SP +A
Sbjct: 11 NTFEFYLEGEDHTFANLLVETLHEDEHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEA 70
Query: 87 YNQA 90
+A
Sbjct: 71 LEKA 74
>gi|403285030|ref|XP_003933845.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Saimiri boliviensis boliviensis]
Length = 134
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 8 ERFVVPEGTKKVSYERDT--KIINAA-------SFTIEREEHTIGNILRMQLHRDENVLF 58
ER + T ER T K++ AA +F + +E+HT+GN L L ++ V F
Sbjct: 9 ERKISGLKTSMAEGERKTALKMVQAAGTDRHCVTFVLHKEDHTLGNSLCYMLMKNPEVEF 68
Query: 59 AGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
GY P + KI +RI T ++ + + +N+L
Sbjct: 69 CGYTTTDPSESKINLRIQTQGALPAVEPFQRVLNEL 104
>gi|157871878|ref|XP_001684488.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68127557|emb|CAJ05635.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 137
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
++ +R T + A E+HT+GN LR L ++ V AGY +PHPL+ K++ +H
Sbjct: 35 QIDLQRITDNESTAVVAFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKML--LHV 92
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++A + + L + D S+F+
Sbjct: 93 QASDYAVEAVAKGLERLAEICDDTISSFD 121
>gi|341581752|ref|YP_004762244.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
gi|340809410|gb|AEK72567.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
Length = 95
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH +++V FAGY + HP + K R+ T + +P +A
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENKHVTFAGYTIEHPVLMARKPKFRVVTDGKVTPEKA 70
Query: 87 YNQAINDL-DKE---LDTLKSA 104
+A + D+ LD K+A
Sbjct: 71 LEEAAQKVFDRARSVLDAWKAA 92
>gi|395841302|ref|XP_003793484.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Otolemur garnettii]
Length = 134
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K E ++ AA +F + ++HT+GN LR + ++ V F GY +
Sbjct: 18 MAEGERKTGLE----MVQAAGIDRHRVTFVLHNKDHTLGNSLRYMIMKNPEVEFCGYTMA 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI + I T ++ + +N+L
Sbjct: 74 HPSESKINLHIQTQGALPAVEPLQRGLNEL 103
>gi|355712710|gb|AES04440.1| polymerase I polypeptide D, 16kDa [Mustela putorius furo]
Length = 90
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHT 77
HP + KI +RI T
Sbjct: 74 HPSESKINLRIQT 86
>gi|240103060|ref|YP_002959369.1| DNA-directed RNA polymerase subunit L [Thermococcus gammatolerans
EJ3]
gi|259494368|sp|C5A5J3.1|RPOL_THEGJ RecName: Full=DNA-directed RNA polymerase subunit L
gi|239910614|gb|ACS33505.1| DNA-directed RNA polymerase subunit L (rpoL) [Thermococcus
gammatolerans EJ3]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH D++V FA Y + HP + K +I T + SP +A
Sbjct: 11 NTFEFYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEA 70
Query: 87 YNQAINDL-DKE---LDTLKSAFE 106
+A + D+ L+ KSA E
Sbjct: 71 LEKAAQRVFDRARAVLEAWKSAIE 94
>gi|288930667|ref|YP_003434727.1| RNA polymerase dimerization [Ferroglobus placidus DSM 10642]
gi|288892915|gb|ADC64452.1| RNA polymerase dimerization [Ferroglobus placidus DSM 10642]
Length = 86
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRIHTTSQSSPMQA 86
N I+ E+HT N+L+ +L +D++V+ A Y +PHP + +++VR T +P+QA
Sbjct: 11 NFVKLVIKGEDHTYLNLLQHELLKDDDVILAKYHIPHPYVGEPELVVR---TKSKNPIQA 67
Query: 87 YNQAINDLDKELDTLKSAF 105
+A + K++D + S
Sbjct: 68 IKEANERIVKKIDEVLSQI 86
>gi|429964494|gb|ELA46492.1| hypothetical protein VCUG_02036 [Vavraia culicis 'floridensis']
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
+ Y +DT N I E HT+GN++ ++ D F+ YK+ HPL ++ +++
Sbjct: 11 IKYSKDTP--NTIELHINGESHTLGNMIAEKILSDPRCTFSAYKVSHPLNEEVDLKVSAE 68
Query: 79 SQSSPMQAYNQAINDLDKELDTL 101
+ + + + L+++LD+L
Sbjct: 69 KDTPVLTLIKENLKGLEEDLDSL 91
>gi|209877969|ref|XP_002140426.1| DNA-directed RNA polymerases I and III subunit RPAC2
[Cryptosporidium muris RN66]
gi|209556032|gb|EEA06077.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Cryptosporidium muris RN66]
Length = 160
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80
+F I E+HT+GNI+R + + FAGY +PHP + +RI T S
Sbjct: 34 TFQINGEDHTLGNIMRHLAMLNPSTTFAGYAIPHPSISSMNLRIETVSN 82
>gi|409048476|gb|EKM57954.1| hypothetical protein PHACADRAFT_116447 [Phanerochaete carnosa
HHB-10118-sp]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ I E HTIGN LR L ++ +PHP + I +RI S ++A
Sbjct: 18 LSAATYQIHDESHTIGNSLRWMLMKN---------VPHPSENHIHLRIQMYDNLSSLEAL 68
Query: 88 NQAINDLDKELDTLKSAFE 106
+A+ +L DT+++A++
Sbjct: 69 LEALENLGNLCDTVENAYK 87
>gi|195050014|ref|XP_001992809.1| GH13479 [Drosophila grimshawi]
gi|193899868|gb|EDV98734.1| GH13479 [Drosophila grimshawi]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + + +
Sbjct: 19 TFVFNNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERA-IDLLKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D + FE
Sbjct: 78 EDLEALCDHTMNTFE 92
>gi|307195509|gb|EFN77395.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Harpegnathos saltator]
Length = 101
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 26 KIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQ 85
K + + +F E HT+GN L+ + + V+ GY L HP + K+++RI T + + +
Sbjct: 6 KGVESKTFVFMDEGHTLGNALKYVISQYPEVIMCGYTLQHPAESKMLLRIQTKN-GNAYE 64
Query: 86 AYNQAINDLDKELD----TLKSAFE 106
+ + DL K D T A+E
Sbjct: 65 LLKRGLEDLAKMCDHTIETFDKAYE 89
>gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
Length = 736
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQA 86
N + F + +E+HT+GN+L + L +V+ A YK+ HP ++ +R+ T +P +A
Sbjct: 3 NCSDFLMLKEDHTLGNLLSVYLKMAPHVMMAAYKIGHPNVPEVQLRVQTDGTITPREA 60
>gi|347522733|ref|YP_004780303.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
gi|343459615|gb|AEM38051.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
Length = 95
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
E+HT+ N++ R +V +A Y++ HPL +V I T SP+ +N++ K
Sbjct: 21 EDHTMANLIVKLAIRKPHVTYAAYRIDHPLVDDPVVVIATDGTVSPIDVLENVLNEIVKL 80
Query: 98 LDTLKSAFE 106
D K FE
Sbjct: 81 CDEFKEKFE 89
>gi|299741997|ref|XP_001832180.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea okayama7#130]
gi|298404981|gb|EAU89553.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea okayama7#130]
Length = 102
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA++ + E HTIGN LR L ++ PHP + I VRI S + A
Sbjct: 18 LSAATYQLHDESHTIGNSLRWMLMKNN---------PHPSENVINVRIQMYDGLSSLDAL 68
Query: 88 NQAINDLDKELDTLKSAF 105
+A++DLD + ++ A+
Sbjct: 69 LKALSDLDNLCEAVEDAY 86
>gi|409076370|gb|EKM76742.1| hypothetical protein AGABI1DRAFT_131035 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 103
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
++AA+F I E HT+GN LR L ++ +PHP + I VRI S A
Sbjct: 19 LSAATFQIHDESHTMGNALRWMLMKN---------VPHPSENVINVRIQMYDNISSFDAL 69
Query: 88 NQAINDLDKELDTLKSAF 105
A+++LD ++++ A+
Sbjct: 70 ISALDNLDHLCESIEDAY 87
>gi|19173564|ref|NP_597367.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|19170770|emb|CAD26544.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|449329222|gb|AGE95496.1| DNA-directed RNA polymerase II [Encephalitozoon cuniculi]
Length = 96
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
T+KV+ N IE E HT+GN+L +L D+ LF+ Y++ HP + +R
Sbjct: 3 STRKVTMNYVGNTRNTIELRIEDETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLR 62
Query: 75 I 75
+
Sbjct: 63 L 63
>gi|363540879|ref|YP_004894465.1| mg414 gene product [Megavirus chiliensis]
gi|448825368|ref|YP_007418299.1| putative DNA directed RNA polymerase subunit [Megavirus lba]
gi|350612044|gb|AEQ33488.1| putative DNA directed RNA polymerase subunit [Megavirus chiliensis]
gi|444236553|gb|AGD92323.1| putative DNA directed RNA polymerase subunit [Megavirus lba]
Length = 361
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAY 87
E+HT+GN+L L + E + AGY +PHP KI+V ++++ S +P++ +
Sbjct: 289 EDHTLGNLLEKVLQKCEFIEKAGYNMPHPFIDKIVVSYKLYSGSTMNPIKVF 340
>gi|371943713|gb|AEX61541.1| putative DNA-directed RNA polymerase subunit [Megavirus courdo7]
gi|425701296|gb|AFX92458.1| putative DNA directed RNA polymerase subunit [Megavirus courdo11]
Length = 148
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAY 87
E+HT+GN+L L + E + AGY +PHP KI+V ++++ S +P++ +
Sbjct: 76 EDHTLGNLLEKVLQKCEFIEKAGYNMPHPFIDKIVVSYKLYSGSTMNPIKVF 127
>gi|401826259|ref|XP_003887223.1| RNA polymerase II subunit Rpb11 [Encephalitozoon hellem ATCC
50504]
gi|392998382|gb|AFM98242.1| RNA polymerase II subunit Rpb11 [Encephalitozoon hellem ATCC
50504]
Length = 96
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 15 GTKKV--SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKII 72
T+K+ SY +T+ N IE E HT+GN+L ++ D+ LF+ Y++ HP +
Sbjct: 3 ATRKITMSYVGNTR--NTVEMKIEGETHTLGNLLCEEMLEDKRCLFSAYRVEHPTDNHVF 60
Query: 73 VRI 75
+RI
Sbjct: 61 LRI 63
>gi|307166226|gb|EFN60456.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 107
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
K++S + I +F E HT+GN L +++ + Y +PHP + KI I
Sbjct: 3 KRLSRIPGNQGITYGTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQ 62
Query: 77 TTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
TT +S+ ++ + + DL++ D F+
Sbjct: 63 TTGESA-IEVLKRGLQDLERICDHTIETFD 91
>gi|302421254|ref|XP_003008457.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
gi|261351603|gb|EEY14031.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
Length = 75
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 54 ENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
++VL AGYK+PHP ++ +R+ T +P A + I DL K+ L F
Sbjct: 3 QHVLMAGYKIPHPNVSEMFIRVQTDGTITPKDAVTEVIKDLMKDFSHLAQEF 54
>gi|284161839|ref|YP_003400462.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
gi|284011836|gb|ADB57789.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
Length = 86
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I E+HT N+L+ L DE+V A Y +PHPLQ + + + T S+ +P++A
Sbjct: 11 NYVKLEIRGEDHTYLNLLQHYLLEDEDVEIARYYIPHPLQDRAELVVKTKSK-NPLEAIK 69
Query: 89 QAINDLDKELDTL 101
+A + K D L
Sbjct: 70 EANEKIVKACDEL 82
>gi|91081259|ref|XP_975661.1| PREDICTED: similar to GA10493-PA [Tribolium castaneum]
gi|270005223|gb|EFA01671.1| hypothetical protein TcasGA2_TC007243 [Tribolium castaneum]
Length = 105
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F ++ E HT+GN LR + +V F Y +PHP++ + +RI S + + A
Sbjct: 15 SCRTFILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRSGRA-VDALK 73
Query: 89 QAINDL 94
+ + DL
Sbjct: 74 RGLEDL 79
>gi|156088259|ref|XP_001611536.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798790|gb|EDO07968.1| conserved hypothetical protein [Babesia bovis]
Length = 92
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 23 RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
R T +IN + +G ++ +L +DE V F GY++PHPL+ K+ +R+ S
Sbjct: 3 RQTPLINRPEMA---DMMELGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKV-DS 58
Query: 83 PMQAYNQAINDLDKELDTLKSAF 105
P AI+ + + LK +
Sbjct: 59 PFTVMLNAISSVRLNIGHLKKVY 81
>gi|195345039|ref|XP_002039083.1| GM17025 [Drosophila sechellia]
gi|195580105|ref|XP_002079896.1| GD21773 [Drosophila simulans]
gi|194134213|gb|EDW55729.1| GM17025 [Drosophila sechellia]
gi|194191905|gb|EDX05481.1| GD21773 [Drosophila simulans]
Length = 106
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEGLCDHTIVTFE 92
>gi|195484391|ref|XP_002090674.1| GE12666 [Drosophila yakuba]
gi|194176775|gb|EDW90386.1| GE12666 [Drosophila yakuba]
Length = 106
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SHRDRAIDILKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEGLCDHTIVTFE 92
>gi|24585154|ref|NP_609950.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|7298551|gb|AAF53770.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|113204857|gb|ABI34162.1| IP05502p [Drosophila melanogaster]
Length = 105
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEGLCDHTIVTFE 92
>gi|194879704|ref|XP_001974284.1| GG21646 [Drosophila erecta]
gi|190657471|gb|EDV54684.1| GG21646 [Drosophila erecta]
Length = 106
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SHRDRAIDILKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEGLCDHTIVTFE 92
>gi|307175199|gb|EFN65277.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 97
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
I +F E HT+GN L +++ + Y +PHP + KI I TT +S+ ++
Sbjct: 4 ITYGTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTTGESA-IEVL 62
Query: 88 NQAINDLDKELDTLKSAFE 106
+ + DL++ D F+
Sbjct: 63 KRGLQDLERICDHTIETFD 81
>gi|442628320|ref|NP_001260563.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
gi|440213920|gb|AGB93098.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
Length = 132
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F E HT+GN L+ + R V F GY +PHP + K+ RI + + +
Sbjct: 43 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILK 101
Query: 89 QAINDLDKELDTLKSAFE 106
+ + DL+ D FE
Sbjct: 102 RGLEDLEGLCDHTIVTFE 119
>gi|194759330|ref|XP_001961902.1| GF15205 [Drosophila ananassae]
gi|190615599|gb|EDV31123.1| GF15205 [Drosophila ananassae]
Length = 106
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI +
Sbjct: 19 TFVFMNEGHTLGNALKTIISRYPEVDFCGYTIPHPTEQKLHFRIQSHR------------ 66
Query: 92 NDLDKELDTLKSAFEFLDA 110
D+ +D LK E L+A
Sbjct: 67 ---DRAVDILKRGLEDLEA 82
>gi|442628318|ref|NP_001260562.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
gi|440213919|gb|AGB93097.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
Length = 116
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 30 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 88
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 89 EDLEGLCDHTIVTFE 103
>gi|295293293|gb|ADF87912.1| MIP21960p [Drosophila melanogaster]
Length = 128
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F E HT+GN L+ + R V F GY +PHP + K+ RI +
Sbjct: 36 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRR--------- 86
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
D+ +D LK E L+
Sbjct: 87 ------DRAIDILKRGLEDLEG 102
>gi|396081340|gb|AFN82957.1| DNA-directed RNA polymerase II [Encephalitozoon romaleae SJ-2008]
Length = 96
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
+KV+ N IE E HT+GN+L ++ D+ LF+ Y++ HP + +RI
Sbjct: 5 RKVTMNYAGNTRNTMELKIEGETHTLGNLLCEEMLEDKRCLFSAYRVEHPTDNHVFLRI 63
>gi|385806140|ref|YP_005842538.1| RNA polymerase, dimerization [Fervidicoccus fontis Kam940]
gi|383796003|gb|AFH43086.1| RNA polymerase, dimerization [Fervidicoccus fontis Kam940]
Length = 98
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKE 97
E+HT GN++ L + + V+ + Y++ HPL+ ++++ + T P++A + I L E
Sbjct: 26 EDHTFGNLMAKTLMKIDGVVMSYYRIDHPLKNEMVLYLKTDGSIKPVEALKKGIGLLKDE 85
Query: 98 LDTLKSAFE 106
+ L++ +
Sbjct: 86 IRELETKIK 94
>gi|282164176|ref|YP_003356561.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
gi|282156490|dbj|BAI61578.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
Length = 95
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
KV + DT+I I+ E+HT+ N L+ L RD+ V A Y + +P I+ I T
Sbjct: 4 KVLNKTDTEI----EVEIKGEDHTLMNALKSALLRDKAVKVATYDIVYPGISNPILYIRT 59
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ P+ A +A DL E +T F
Sbjct: 60 SKSEDPIDALKKASKDLADECETFIDLF 87
>gi|195115228|ref|XP_002002166.1| GI17231 [Drosophila mojavensis]
gi|193912741|gb|EDW11608.1| GI17231 [Drosophila mojavensis]
Length = 106
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + + +
Sbjct: 19 TFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERA-IDLLKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEALCDHTIETFE 92
>gi|195398063|ref|XP_002057644.1| GJ17990 [Drosophila virilis]
gi|194141298|gb|EDW57717.1| GJ17990 [Drosophila virilis]
Length = 106
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + + +
Sbjct: 19 TFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERA-IDLLKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEALCDHTIETFE 92
>gi|195164594|ref|XP_002023131.1| GL21124 [Drosophila persimilis]
gi|198461937|ref|XP_001352281.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
gi|194105216|gb|EDW27259.1| GL21124 [Drosophila persimilis]
gi|198142415|gb|EAL29383.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
Length = 110
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI +
Sbjct: 19 TFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRR------------ 66
Query: 92 NDLDKELDTLKSAFEFLDA 110
D+ +D LK E L+A
Sbjct: 67 ---DRAVDLLKRGLEDLEA 82
>gi|225581054|gb|ACN94631.1| GA10493 [Drosophila miranda]
Length = 110
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI +
Sbjct: 19 TFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRR------------ 66
Query: 92 NDLDKELDTLKSAFEFLDA 110
D+ +D LK E L+A
Sbjct: 67 ---DRAVDLLKRGLEDLEA 82
>gi|315230251|ref|YP_004070687.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
gi|315183279|gb|ADT83464.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
Length = 95
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRIHTTSQSSPMQA 86
N F + E+HT N+L LH +++V FAGY + HP+ K R+ T + +P +A
Sbjct: 11 NVLEFYLVGEDHTFANLLNEVLHENKHVTFAGYTIEHPILTARKPKFRVVTDGKITPEKA 70
Query: 87 YNQA 90
+A
Sbjct: 71 LEEA 74
>gi|303391349|ref|XP_003073904.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
gi|303303053|gb|ADM12544.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 26 KIINAASFTIEREEHTIGNILRMQLHRD---ENVLFAGYKLPHPLQ--YKIIVRIHTTSQ 80
+I+N + +E+E+HTI N LR + ++ ENV GY +PHP + ++ S
Sbjct: 8 RILNTQTIQVEKEDHTIMNPLRWCISKNFYGENVELVGYTIPHPSDDASNLTIQFSNESS 67
Query: 81 SSPMQAYNQAINDLD 95
+P + + + L+
Sbjct: 68 QTPPNLFKKMMEGLE 82
>gi|324515757|gb|ADY46304.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Ascaris
suum]
Length = 119
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 35 IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQS 81
+ E+HTIGN L+ L + V F GY +PHPL+ KI T++
Sbjct: 32 LHEEDHTIGNSLKHILCKMAEVEFCGYNVPHPLEDKIFSSCTDTARC 78
>gi|332016284|gb|EGI57197.1| Putative DNA-directed RNA polymerases I and III subunit RPAC2
[Acromyrmex echinatior]
Length = 103
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
+F + E HT+GN L ++ V G+ +PHP + ++ + I TT ++ +Q +
Sbjct: 12 GTFVFDDEGHTLGNALASVINEYPGVKICGHTVPHPAENRMHLNIQTTGENV-IQVLKRG 70
Query: 91 INDLDKELD----TLKSAFE 106
+ DL++ D T A+E
Sbjct: 71 LQDLERMCDHTIETFNKAYE 90
>gi|410058836|ref|XP_003318424.2| PREDICTED: uncharacterized protein LOC100610393 [Pan troglodytes]
Length = 231
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 53 DENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
D VL +PHPL+ KII+ TT SP +A AI DL EL L+ F
Sbjct: 125 DPQVLLLLXXVPHPLERKIIIEXQTTPDYSPQEALPNAIADLISELSLLEERF 177
>gi|399949657|gb|AFP65315.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 100
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 34 TIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
T E+HT+GN+LR + + V F GY +PHP + + ++I T +S
Sbjct: 18 TFYNEDHTLGNVLRFLIAGNPEVKFVGYNVPHPSEKIMNLKIVTNVSNS 66
>gi|242398485|ref|YP_002993909.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
gi|259494369|sp|C6A1R5.1|RPOL_THESM RecName: Full=DNA-directed RNA polymerase subunit L
gi|242264878|gb|ACS89560.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
Length = 95
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F + E+HT N+L LH +++V FA Y + HP + K RI T + +P +A
Sbjct: 11 NLLEFYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPEKA 70
Query: 87 YNQAINDL-DKELDTLK 102
+A + D+ D L+
Sbjct: 71 LEEAAQKIFDRAKDVLE 87
>gi|311977857|ref|YP_003986977.1| putative DNA directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|82000150|sp|Q5UQD9.1|YR470_MIMIV RecName: Full=Putative DNA directed RNA polymerase subunit R470
gi|55417086|gb|AAV50736.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
mimivirus]
gi|308204852|gb|ADO18653.1| putative DNA directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|339061407|gb|AEJ34711.1| DNA-directed RNA polymerase subunit L [Acanthamoeba polyphaga
mimivirus]
Length = 357
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAYNQAINDLD 95
E+HT+G IL L + E V AGY +PH L KI+V +++ S+ P++ N I L
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
Query: 96 K 96
K
Sbjct: 345 K 345
>gi|351737622|gb|AEQ60657.1| DNA directed RNA polymerase subunit L [Acanthamoeba castellanii
mamavirus]
gi|398257296|gb|EJN40904.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
lentillevirus]
Length = 357
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAYNQAINDLD 95
E+HT+G IL L + E V AGY +PH L KI+V +++ S+ P++ N I L
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
Query: 96 K 96
K
Sbjct: 345 K 345
>gi|429217339|ref|YP_007175329.1| DNA-directed RNA polymerase subunit L [Caldisphaera lagunensis
DSM 15908]
gi|429133868|gb|AFZ70880.1| DNA-directed RNA polymerase, subunit L [Caldisphaera lagunensis
DSM 15908]
Length = 102
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSP 83
IE E+HTIGN+L L + V A Y++PHPL+ ++I+ + P
Sbjct: 19 IEGEDHTIGNLLSTVLQTLKGVNIAYYEVPHPLENRLIIYMDLDENIDP 67
>gi|300707051|ref|XP_002995750.1| hypothetical protein NCER_101277 [Nosema ceranae BRL01]
gi|239604958|gb|EEQ82079.1| hypothetical protein NCER_101277 [Nosema ceranae BRL01]
Length = 91
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66
+++Y+++ K N +E+E H++G+ L +L +D+ +F+ YK+ HP
Sbjct: 4 EINYDKNIK--NTIELKVEKETHSLGSSLSDKLCKDKRCIFSSYKVCHP 50
>gi|403344569|gb|EJY71632.1| DNA-directed RNA polymerase I subunit D [Oxytricha trifallax]
Length = 154
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
A+++ E+HT+GN+LR + ++ V F Y +PHP + + VR+
Sbjct: 66 ATYSFLNEDHTLGNLLRNVIIKNNQVEFCAYSVPHPSEPIMNVRLQ 111
>gi|449019035|dbj|BAM82437.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 117
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
T+ E HT+GN LR L R+ V GY +PHP + + + + + S + + A+
Sbjct: 38 LTLRGEGHTLGNALRYMLTREPGVQQVGYTIPHPSEDCLKLYVVSKPGSRALDSVKLALF 97
Query: 93 DLDKELDTLKSAFE 106
L + D + +E
Sbjct: 98 HLTQLCDIVGEKYE 111
>gi|353238406|emb|CCA70353.1| hypothetical protein PIIN_04292 [Piriformospora indica DSM 11827]
Length = 97
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 31 ASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQA 90
AS+ I E HT+GN LR + ++ PHP + KI +RI S + A +A
Sbjct: 17 ASYAIADETHTLGNALRWMIMKNA---------PHPSENKIHIRIQMYDNQSSLDALIEA 67
Query: 91 INDLD 95
++ LD
Sbjct: 68 LDALD 72
>gi|19074859|ref|NP_586365.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|19069584|emb|CAD25969.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|449328733|gb|AGE95010.1| DNA-directed RNA polymerase I and III subunit 14k
[Encephalitozoon cuniculi]
Length = 104
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRD---ENVLFAGYKLPHP 66
+S E KI+N + + +E+HTI N LR + ++ E V GY +PHP
Sbjct: 1 MSKEPRIKILNGQTVQVRKEDHTIMNPLRWCIGKNFTGEKVELVGYTIPHP 51
>gi|160331703|ref|XP_001712558.1| rpc9 [Hemiselmis andersenii]
gi|159766007|gb|ABW98233.1| rpc9 [Hemiselmis andersenii]
Length = 100
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
KK+ + T+ + SF E+HT+GNILR + + N+ + GY +PHP + + ++I
Sbjct: 3 KKIINIKKTQKVILISFY--NEDHTLGNILRTVIEGNPNIDYVGYNIPHPSENIMNLKIS 60
Query: 77 TTSQSS 82
++ S
Sbjct: 61 SSKFDS 66
>gi|396082418|gb|AFN84027.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon romaleae SJ-2008]
Length = 100
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 22 ERDTKIINAASFTIEREEHTIGNILRMQLHRD---ENVLFAGYKLPHPLQYKIIVRIHTT 78
E KI+N + + +E+HTI N LR + ++ E V GY +PHP + I +
Sbjct: 4 EDCIKILNDQTIQVNKEDHTIMNPLRWCISKNFVGEKVELVGYTIPHPSDDVSNITIQFS 63
Query: 79 SQSS 82
S+SS
Sbjct: 64 SESS 67
>gi|339240153|ref|XP_003376002.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
gi|316975307|gb|EFV58753.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
Length = 101
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
KVSY + + + SFTIE+E+HT Y +PHP++ +I++ I T
Sbjct: 24 KVSYPKGSYSPHCQSFTIEKEDHT-------------------YNVPHPMEDRILLHIET 64
Query: 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106
S + + + + +TLK+ E
Sbjct: 65 DKSVSAVDIFKRGLKQASFIFETLKTKVE 93
>gi|240849101|ref|NP_001155573.1| DNA-directed RNA polymerase I 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239791842|dbj|BAH72334.1| ACYPI004493 [Acyrthosiphon pisum]
Length = 106
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E E HT+G++L L F Y + HP + KI +R+ + S + +
Sbjct: 19 TFVFEDEGHTLGSLLTYVLESFPETDFCAYSIRHPSENKIYLRLKVKNGHSVEDIFKRGF 78
Query: 92 NDLDKELDTLKSAF 105
+L++ L+ +K F
Sbjct: 79 QELNQILNHVKKTF 92
>gi|218884727|ref|YP_002429109.1| DNA-directed RNA polymerase subunit L [Desulfurococcus
kamchatkensis 1221n]
gi|218766343|gb|ACL11742.1| DNA-directed RNA polymerase, subunit L [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPL----QYKIIVRIHTTSQSSPMQAYNQAIND 93
E+HT+GN+L + R V +A Y++PHPL ++ IIV+ T +S +N
Sbjct: 20 EDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVES----ILRDIVNG 75
Query: 94 LDKELDTLKSAFE 106
L L L+ E
Sbjct: 76 LKNSLAELRRLVE 88
>gi|170289751|ref|YP_001736567.1| DNA-directed RNA polymerase subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
gi|229564219|sp|B1L7Q7.1|RPOL_KORCO RecName: Full=DNA-directed RNA polymerase subunit L
gi|170173831|gb|ACB06884.1| DNA-directed RNA polymerase, subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 98
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I E HT+ + L +L+ + V FAGY +PHPL+ + ++ + +P +
Sbjct: 11 NEIRVLIRGETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLK 70
Query: 89 QAINDLDKELDTLKSAF 105
AI L ++ + + ++F
Sbjct: 71 GAIRRLMEKYEIIGNSF 87
>gi|443718702|gb|ELU09209.1| hypothetical protein CAPTEDRAFT_31867, partial [Capitella teleta]
Length = 51
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 55 NVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDK 96
+V F GY +PHP + KI +RI T S+ M + +NDL K
Sbjct: 2 DVEFCGYSVPHPSETKINLRIQTKGPSA-MSVLEKGLNDLKK 42
>gi|440494570|gb|ELQ76940.1| RNA polymerase, subunit L [Trachipleistophora hominis]
Length = 103
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTT 78
+ Y ++T N I E HT+GN++ ++ D F+ YK+ HPL ++ +++
Sbjct: 11 IKYSKNTP--NTVELHINGESHTLGNLIAEKILSDPRCTFSAYKVNHPLDEEVDLKVSAQ 68
Query: 79 SQSSPMQAYNQAINDLDKELDTL 101
+ + + L+ ++++L
Sbjct: 69 KDTPVLTLIKDNLKSLEDDIESL 91
>gi|390937790|ref|YP_006401528.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM
16532]
gi|390190897|gb|AFL65953.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM
16532]
Length = 93
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPL----QYKIIVRIHTTSQS 81
E+HT+GN+L + R V +A Y++PHPL ++ IIV+ T +S
Sbjct: 20 EDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVES 67
>gi|315425738|dbj|BAJ47393.1| DNA-directed RNA polymerase subunit L [Candidatus Caldiarchaeum
subterraneum]
gi|315425784|dbj|BAJ47438.1| DNA-directed RNA polymerase subunit L [Candidatus Caldiarchaeum
subterraneum]
gi|315427643|dbj|BAJ49240.1| DNA-directed RNA polymerase subunit L [Candidatus Caldiarchaeum
subterraneum]
gi|343484623|dbj|BAJ50277.1| DNA-directed RNA polymerase subunit L [Candidatus Caldiarchaeum
subterraneum]
Length = 92
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 39 EHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT-TSQSSPMQAYNQAIND---- 93
+ +I N+ L+ E V +AGY++ HPL +I V I +++ +P +A +A+
Sbjct: 21 DQSILNLFTETLNSIEGVSYAGYRVEHPLTGEITVSIKVESTKITPRKAVQKALERLQET 80
Query: 94 ---LDKELDTLK 102
LDKEL+ L+
Sbjct: 81 FKILDKELEVLR 92
>gi|375082272|ref|ZP_09729338.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
gi|374743029|gb|EHR79401.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
Length = 95
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F + E+HT N+L LH +++V FA Y + HP + K ++ T + +P +A
Sbjct: 11 NLLEFYLVGEDHTFANLLNEVLHENKHVTFAAYTIEHPVLMARKPRFKVATDGKITPEKA 70
Query: 87 YNQA 90
+A
Sbjct: 71 LEEA 74
>gi|330508815|ref|YP_004385243.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
gi|328929623|gb|AEB69425.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
Length = 91
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N A E HTI N+LR +L +D+ VL A Y P+ + R+ T+ + P+ A
Sbjct: 11 NEAVIEFVGEGHTILNLLRTELLKDKRVLMATYDTKFPVMDNPVFRL-VTNGADPIIALK 69
Query: 89 QAINDLDKELDTLKSAF 105
+A + + + D S +
Sbjct: 70 EATSRIIDQCDEFSSKY 86
>gi|337285374|ref|YP_004624848.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
gi|334901308|gb|AEH25576.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
Length = 95
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L L ++++ FA Y + HP+ K R+ T + +P +A
Sbjct: 11 NLLEFYLEGEDHTFANLLVEILRENKHIKFAAYTIEHPITMARKPRFRVVTDGKVTPERA 70
Query: 87 YNQAINDL-DKELDTLKS 103
+A + +K +TL++
Sbjct: 71 LEEAAKKIFEKAKETLEA 88
>gi|387592822|gb|EIJ87846.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595443|gb|EIJ93067.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 95
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 32 SFTIE--REEHTIGNILRMQLHRDENVL---FAGYKLPHPLQYKIIVRIHTTSQSSPMQ- 85
SFTIE + HTI N++R ++ E+V GY +PHP++ + I++I + +
Sbjct: 8 SFTIELLKTNHTILNVIRWAINEFESVYDVELIGYTIPHPMEERAIMKIQLKREEEQTED 67
Query: 86 -----------AYNQAINDLDKELDT 100
A + N+L+++L T
Sbjct: 68 AILSILRRGITAVEEVFNNLEEKLST 93
>gi|11497823|ref|NP_069045.1| DNA-directed RNA polymerase subunit L [Archaeoglobus fulgidus DSM
4304]
gi|11387069|sp|O30032.1|RPOL_ARCFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|2650437|gb|AAB91026.1| DNA-directed RNA polymerase, subunit L (rpoL) [Archaeoglobus
fulgidus DSM 4304]
Length = 86
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 24 DTKIINAAS----FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+ KII+ I+ E HT N+L+ L DE+V+ A Y +PHPL + + I TS
Sbjct: 2 EVKIIDIGEDYVRLVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYI-KTS 60
Query: 80 QSSPMQAYNQAINDLDKELDTL 101
P++A +A + +TL
Sbjct: 61 GVDPLEAVKRANEKIIAACNTL 82
>gi|302348995|ref|YP_003816633.1| DNA-directed RNA polymerase II subunit RPB11 [Acidilobus
saccharovorans 345-15]
gi|302329407|gb|ADL19602.1| DNA-directed RNA polymerase II subunit RPB11 [Acidilobus
saccharovorans 345-15]
Length = 101
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N+ IE E+HT+GN+L L + V+ A Y+L HPL +I V + +
Sbjct: 12 NSYVIEIENEDHTLGNLLSSTLAGVKGVVDAYYELEHPLFRRIKVYVRLEDGYDIKEVLR 71
Query: 89 QAIN 92
+A+N
Sbjct: 72 EALN 75
>gi|441432272|ref|YP_007354314.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
moumouvirus]
gi|371945069|gb|AEX62890.1| putative DNA-directed RNA polymerase subunit [Moumouvirus Monve]
gi|440383352|gb|AGC01878.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
moumouvirus]
Length = 362
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAYNQAI 91
E+HT+G +L L + E V AGY +PHP I++ +++ S +P++ + I
Sbjct: 287 EDHTLGRLLEDVLQKCEYVEKAGYTMPHPFIDTIVISYKLYQDSGLNPIKIFTDCI 342
>gi|451927533|gb|AGF85411.1| directed RNA polymerase subunit L [Moumouvirus goulette]
Length = 362
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAYNQAI 91
E+HT+G +L L + E V AGY +PHP I++ +++ S +P++ + I
Sbjct: 287 EDHTLGRLLEDVLQKCEYVEKAGYTMPHPFIDTIVISYKLYQDSGLNPIKIFTDCI 342
>gi|15679317|ref|NP_276434.1| DNA-dependent RNA polymerase subunit L [Methanothermobacter
thermautotrophicus str. Delta H]
gi|11387068|sp|O27372.1|RPOL_METTH RecName: Full=DNA-directed RNA polymerase subunit L
gi|2622422|gb|AAB85795.1| DNA-dependent RNA polymerase, subunit L [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 85
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N E E HT+ N+LR L DE V A Y + HP+ + + I S ++A
Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68
Query: 89 QAIND 93
+ + D
Sbjct: 69 ETLRD 73
>gi|389851562|ref|YP_006353796.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
gi|388248868|gb|AFK21721.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
Length = 97
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L L + +V F Y + HP+ K R+ T + +P QA
Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGKVTPEQA 70
Query: 87 YNQAINDL 94
+A +
Sbjct: 71 LEEAAKKI 78
>gi|14591738|ref|NP_142060.1| DNA-directed RNA polymerase subunit L [Pyrococcus horikoshii OT3]
gi|11387091|sp|P57671.1|RPOL_PYRHO RecName: Full=DNA-directed RNA polymerase subunit L
Length = 95
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQAYNQA 90
F +E E+HT N+L L D +V F Y + HP+ K R+ T + +P +A +A
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
Query: 91 INDLDKELDTLKSAFEFLDA 110
+ A E LDA
Sbjct: 75 ARKI------FNRAKEVLDA 88
>gi|225708772|gb|ACO10232.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 57
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 57 LFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
F GY +PHP + ++++RI T S A + + DL + S F
Sbjct: 3 FFCGYSIPHPAEDQMLLRIQTVSSVPAQDALRRGLEDLKDMCSVVSSKF 51
>gi|307110082|gb|EFN58319.1| hypothetical protein CHLNCDRAFT_142343 [Chlorella variabilis]
Length = 139
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 23 RDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
D+ I+ + E HT+GN LR + +V A Y HP +I+VR T+ +
Sbjct: 17 EDSSIV----LALGDETHTLGNALRDVMWAHPHVQLASYTQEHPSLNEIVVRCQTSGAVT 72
Query: 83 PMQAYNQAIN 92
QA +A++
Sbjct: 73 AEQAVAEALH 82
>gi|402471533|gb|EJW05250.1| hypothetical protein EDEG_00715 [Edhazardia aedis USNM 41457]
Length = 107
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
IN ++ + E+HT+ N LR + ++++V GY +PHP + K ++I Q Y
Sbjct: 15 INDSTVEVIDEDHTLLNPLRYMITKNDHVELVGYSIPHPSERKAQLKI----QLKKAFKY 70
Query: 88 NQAI--------NDLDK 96
N +I +DLDK
Sbjct: 71 NNSIDKIIYKGADDLDK 87
>gi|124028487|ref|YP_001013807.1| DNA-directed RNA polymerase subunit L [Hyperthermus butylicus DSM
5456]
gi|123979181|gb|ABM81462.1| DNA-directed RNA polymerase subunit L [Hyperthermus butylicus DSM
5456]
Length = 105
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N +E E+ TI N++ R V++A Y + HPL ++ + T P+
Sbjct: 15 NTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLE 74
Query: 89 QAINDL 94
+ + D+
Sbjct: 75 EVLKDI 80
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR 74
G + RD + I ++T E+HT+G LR + F GY +PHPL+ KI
Sbjct: 381 GLEVAHMSRDKRRI---TYTFHGEDHTLGLALRYCILHSTKATFCGYCVPHPLEDKIHFD 437
Query: 75 IHTTSQSS 82
+ + S+
Sbjct: 438 VQVKNGSA 445
>gi|401828018|ref|XP_003888301.1| RNA polymerase subunit AC19 [Encephalitozoon hellem ATCC 50504]
gi|392999573|gb|AFM99320.1| RNA polymerase subunit AC19 [Encephalitozoon hellem ATCC 50504]
Length = 104
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 27 IINAASFTIEREEHTIGNILRMQLHRD---ENVLFAGYKLPHPLQYKIIVRIHTTSQSS 82
I+N + ++ E+HTI N LR + ++ E+V GY +PHP + I +S+SS
Sbjct: 9 ILNDQTIQVKEEDHTIMNPLRWCISKNFTGESVELVGYTIPHPSDDVSNLTIQFSSESS 67
>gi|332158208|ref|YP_004423487.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
gi|331033671|gb|AEC51483.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
Length = 95
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQAYNQA 90
F +E E+HT N+L L + +V FA Y + HP+ K R+ T + +P +A A
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFAAYTIEHPITMARKPRFRVVTDGKITPEKALEDA 74
Query: 91 INDLDKELDTLKSAFEFLDA 110
+ + A E LDA
Sbjct: 75 ARKI------FERAKEVLDA 88
>gi|450713|emb|CAA50821.1| RNA polymerase subunit 10kDa [African swine fever virus]
Length = 88
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 31 ASFTIEREEHTIGNILRMQLHR-DENVLFAGYK-LPHPLQYKIIVRIHTTSQSSPMQAYN 88
A TI+ E HTIGN+L+ ++ ++ F GY+ +PH Q ++ IH SQ +
Sbjct: 8 AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCVPHK-QEMVLTIIHKASQEDLITLLE 66
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
++I ++ + TL+ + L A
Sbjct: 67 KSIQNIIQMFQTLEKNIDELIA 88
>gi|443717012|gb|ELU08251.1| hypothetical protein CAPTEDRAFT_97316 [Capitella teleta]
Length = 64
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 58 FAGYKLPHPLQYKIIVRIHT--TSQSSPMQAYNQAINDLDK 96
F GY +PHP + KI +RI T T++ M + +NDL K
Sbjct: 10 FCGYSVPHPSETKINLRIQTKGTNRVISMSVLEKGLNDLKK 50
>gi|18976422|ref|NP_577779.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus DSM
3638]
gi|397652234|ref|YP_006492815.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
gi|23822104|sp|Q8U4N1.1|RPOL_PYRFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|18891954|gb|AAL80174.1| DNA-directed RNA polymerase subunit l [Pyrococcus furiosus DSM
3638]
gi|393189825|gb|AFN04523.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
Length = 95
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L L + +V F Y + HP+ K R+ T + +P +A
Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70
Query: 87 YNQAINDLDKELDTLKSAFE 106
+A + + + A+E
Sbjct: 71 LEEAAKKIFERAKEVLEAWE 90
>gi|229891766|sp|Q65229.2|RPB3_ASFM2 RecName: Full=Putative DNA-directed RNA polymerase subunit 3
homolog
Length = 359
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 31 ASFTIEREEHTIGNILRMQLHR-DENVLFAGYK-LPHPLQYKIIVRIHTTSQSSPMQAYN 88
A TI+ E HTIGN+L+ ++ ++ F GY+ +PH Q ++ IH SQ +
Sbjct: 279 AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCVPHK-QEMVLTIIHKASQEDLITLLE 337
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
++I ++ + TL+ + L A
Sbjct: 338 KSIQNIIQMFQTLEKNIDELIA 359
>gi|288559427|ref|YP_003422913.1| DNA-directed RNA polymerase subunit L RpoL [Methanobrevibacter
ruminantium M1]
gi|288542137|gb|ADC46021.1| DNA-directed RNA polymerase subunit L RpoL [Methanobrevibacter
ruminantium M1]
Length = 92
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRIHTTSQSSPMQAYNQA 90
I E H++ N+LR L D++V +A Y + HPL K ++ I T P + +A
Sbjct: 15 MIIHGENHSLCNVLRKYLMEDDDVEYAVYGIDHPLTGAGKPVMTIKTKRSKRPRNSLLKA 74
Query: 91 INDLDKELDTLKSAFEFL 108
L +E K E L
Sbjct: 75 ATRLKEETAEFKELIEEL 92
>gi|260796689|ref|XP_002593337.1| hypothetical protein BRAFLDRAFT_277116 [Branchiostoma floridae]
gi|229278561|gb|EEN49348.1| hypothetical protein BRAFLDRAFT_277116 [Branchiostoma floridae]
Length = 1424
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 35 IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
I EE+TIG L + R + V A KL P+ +K+ + +H +S P+Q +Q
Sbjct: 290 IRLEEYTIGQSLTVSYWRAQLVEAAQNKLEIPVTHKLTIAMHDNDKSRPLQVKHQ 344
>gi|304315438|ref|YP_003850585.1| DNA-directed RNA polymerase, subunit L [Methanothermobacter
marburgensis str. Marburg]
gi|302588897|gb|ADL59272.1| DNA-directed RNA polymerase, subunit L [Methanothermobacter
marburgensis str. Marburg]
Length = 85
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 36 EREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRIHTTSQSSPMQAYNQAIND 93
E E HT+ N+LR L DE V A Y + HP+ + ++ +R SP ++ +A
Sbjct: 16 EGETHTLCNVLRSILMEDETVKAAAYSIDHPIVGEPQLYIR-----ARSPKKSLIKAAGT 70
Query: 94 LDKELDTLKSAFE 106
L + D +S E
Sbjct: 71 LIERCDEFRSLIE 83
>gi|406984865|gb|EKE05774.1| hypothetical protein ACD_19C00178G0001 [uncultured bacterium]
Length = 484
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 7 YERFVVPEGTKKVSYERDTKIINAASF--TIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
Y R VPEG + V RD K+I++++ IE ++ G L ++ + N+ F+ Y LP
Sbjct: 356 YARVFVPEGVELVKIVRDGKVISSSNVDKGIELKKTWFGTFLSLEPNNKTNLSFS-YYLP 414
Query: 65 HPLQYKI 71
+ + KI
Sbjct: 415 NRIAEKI 421
>gi|261349794|ref|ZP_05975211.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|288860578|gb|EFC92876.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 95
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
F + E H + N LR L +D +V +A Y + HPL + + I T P + +A +
Sbjct: 19 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 78
Query: 93 DLDKELDTLKSAFE 106
L + K E
Sbjct: 79 QLKDDAADFKKLIE 92
>gi|229891562|sp|P0C9E8.1|RPB3_ASFK5 RecName: Full=Putative DNA-directed RNA polymerase subunit 3
homolog
Length = 359
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 31 ASFTIEREEHTIGNILRMQLHR-DENVLFAGYK-LPHPLQYKIIVRIHTTSQSSPMQAYN 88
A TI+ E HTIGN+L+ ++ ++ F GY+ +PH Q ++ IH SQ +
Sbjct: 279 AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCIPHK-QEMVLTIIHKASQEDLITLLE 337
Query: 89 QAINDLDKELDTLK 102
++I ++ + TL+
Sbjct: 338 KSIQNIIQIFQTLE 351
>gi|148643416|ref|YP_001273929.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222445658|ref|ZP_03608173.1| hypothetical protein METSMIALI_01299 [Methanobrevibacter smithii
DSM 2375]
gi|148552433|gb|ABQ87561.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222435223|gb|EEE42388.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 96
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
F + E H + N LR L +D +V +A Y + HPL + + I T P + +A +
Sbjct: 20 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 79
Query: 93 DLDKELDTLKSAFE 106
L + K E
Sbjct: 80 QLKDDAADFKKLIE 93
>gi|359461852|ref|ZP_09250415.1| TPR repeat-containing protein [Acaryochloris sp. CCMEE 5410]
Length = 819
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRM--QLHRDENVLFAGYKLPHPL------QY 69
K S E+ II + H +GNILR+ QL E VL G LPH ++
Sbjct: 122 KTSLEKSNNIIQSQQII---ALHNLGNILRLLGQLEASELVLKQG--LPHSSLLSGEDRH 176
Query: 70 KIIVRIHTTSQSSPMQAYNQ-AIN-DLDKELDTLKSAFEFLDA 110
I + + T QS QAYNQ +I+ D D + ++L +A E+ A
Sbjct: 177 SIELALANTYQSLYKQAYNQLSISIDSDSQANSLNTAQEYAQA 219
>gi|312137235|ref|YP_004004572.1| RNA polymerase dimerization [Methanothermus fervidus DSM 2088]
gi|311224954|gb|ADP77810.1| RNA polymerase dimerization [Methanothermus fervidus DSM 2088]
Length = 86
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRI 75
K+ ++TK N ++ E HT N+LR +L D++V A Y + HP+ + ++ VR
Sbjct: 2 KIKITKETK--NELEIILKGENHTFCNLLRKKLLEDKDVEVAAYTIDHPIVGEPRLYVRG 59
Query: 76 HTTSQSSPMQAYN--QAINDLDKELDT 100
QS A N + N+ K L++
Sbjct: 60 KNPKQSLLKAAKNIKENFNEFKKILES 86
>gi|291222195|ref|XP_002731103.1| PREDICTED: xanthine dehydrogenase-like [Saccoglossus kowalevskii]
Length = 1304
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + H +G +R + RDE++ +G++ P +YK+ + QS + Y+ A
Sbjct: 783 STCLAVAAHRVGKPVRFMMDRDEDMCMSGFRHPFLARYKVGFNNNGKIQSIEIDLYSNAG 842
Query: 92 NDLDKELDTLKSAFEFLDA 110
LD + A +D
Sbjct: 843 CSLDLSASVMDRALYSVDG 861
>gi|14520268|ref|NP_125743.1| DNA-directed RNA polymerase subunit L [Pyrococcus abyssi GE5]
gi|11387115|sp|Q9V2M4.1|RPOL_PYRAB RecName: Full=DNA-directed RNA polymerase subunit L
gi|5457483|emb|CAB48974.1| rpoL DNA-directed RNA polymerase, subunit L [Pyrococcus abyssi GE5]
gi|380740789|tpe|CCE69423.1| TPA: DNA-directed RNA polymerase subunit L [Pyrococcus abyssi GE5]
Length = 95
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQAYNQ 89
F +E E+HT N+L L + +V F Y + HP + K R+ T + +P +A +
Sbjct: 14 EFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEE 73
Query: 90 A---INDLDKE-LDTLKSA 104
A I D KE LD + A
Sbjct: 74 AAKKIFDRAKEVLDAWEKA 92
>gi|327401581|ref|YP_004342420.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
gi|327317089|gb|AEA47705.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
Length = 86
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL--QYKIIVRIHTTSQSSPMQAYNQA 90
++ E+HT N+L+ L DE+V+ A Y + HPL + ++ VR T+ +P+ A +A
Sbjct: 15 LLVKGEDHTFLNLLQHYLLEDEDVVVAKYHISHPLVGEPELFVR---TNGKNPLDAIKEA 71
Query: 91 INDLDKELDTLKS 103
+ K + L S
Sbjct: 72 NEKIAKYCEELIS 84
>gi|291336193|gb|ADD95766.1| DNA directed RNA polymerase subunit D [uncultured organism
MedDCM-OCT-S08-C195]
Length = 378
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 21 YERDTKIINAASFTIEREEHTIGNILRMQLHR-----DENVLFAGYKLPHPLQYKIIVRI 75
+ +T + N +E E++T+G +L L+R D+ + F G+K HP K ++R+
Sbjct: 285 FTSETTMENCYDVHLEDEDYTVGKVLEYILYRKYYDEDKTLTFCGFKKFHPHDTKSVIRL 344
>gi|320100250|ref|YP_004175842.1| RNA polymerase dimerization [Desulfurococcus mucosus DSM 2162]
gi|319752602|gb|ADV64360.1| RNA polymerase dimerization [Desulfurococcus mucosus DSM 2162]
Length = 93
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPL----QYKIIVRIHTTSQSSPMQAYNQAIND 93
E+HT+GN+L + R V ++ Y++PHPL ++ IIV+ + S + +
Sbjct: 20 EDHTLGNLLAKEAIRHPGVEYSMYRVPHPLKNMFEFTIIVKPGYSVDS----VLKEIVEG 75
Query: 94 LDKELDTLKSAFE 106
L K L + E
Sbjct: 76 LKKTLSEFRGLVE 88
>gi|297526174|ref|YP_003668198.1| RNA polymerase dimerization [Staphylothermus hellenicus DSM
12710]
gi|297255090|gb|ADI31299.1| RNA polymerase dimerization [Staphylothermus hellenicus DSM
12710]
Length = 97
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 41 TIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRI 75
T+GN++ + + V++A Y++PHPLQ K+ + I
Sbjct: 29 TLGNLIAKEAMKHPKVVYASYRIPHPLQNKLEIMI 63
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,610,018,219
Number of Sequences: 23463169
Number of extensions: 55514608
Number of successful extensions: 142531
Number of sequences better than 100.0: 823
Number of HSP's better than 100.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 141719
Number of HSP's gapped (non-prelim): 833
length of query: 110
length of database: 8,064,228,071
effective HSP length: 78
effective length of query: 32
effective length of database: 6,234,100,889
effective search space: 199491228448
effective search space used: 199491228448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)