BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033831
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|K Chain K, Wild Type Rna Polymerase Ii
pdb|1NT9|K Chain K, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|K Chain K, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|K Chain K, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|K Chain K, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|K Chain K, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|K Chain K, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|K Chain K, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|K Chain K, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|K Chain K, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|K Chain K, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|K Chain K, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|K Chain K, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|K Chain K, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|K Chain K, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|K Chain K, 12-Subunit Rna Polymerase Ii
pdb|2E2H|K Chain K, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|K Chain K, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|K Chain K, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|W Chain W, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|K Chain K, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|K Chain K, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|K Chain K, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|K Chain K, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|K Chain K, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|K Chain K, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|K Chain K, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|K Chain K, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|K Chain K, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|K Chain K, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|K Chain K, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|K Chain K, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|L Chain L, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|K Chain K, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|W Chain W, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|K Chain K, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|K Chain K, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|K Chain K, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|K Chain K, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|K Chain K, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|K Chain K, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|K Chain K, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|K Chain K, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|K Chain K, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|K Chain K, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|K Chain K, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|K Chain K, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|K Chain K, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|K Chain K, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|K Chain K, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|K Chain K, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|K Chain K, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|K Chain K, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|K Chain K, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 120
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 123
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE + G KV+YE D+K NAA T+E+E+HT+ N+L QL DE VLFAG
Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL + I+R+ T SP Q A L L+ +K F
Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104
>pdb|2PA8|L Chain L, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
pdb|2PMZ|L Chain L, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|X Chain X, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|L Chain L, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
pdb|3HKZ|V Chain V, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
Length = 92
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L R V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70
Query: 89 QAINDL 94
+AI ++
Sbjct: 71 KAIENI 76
>pdb|2WAQ|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|M Chain M, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|L Chain L, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
pdb|2Y0S|M Chain M, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
pdb|4AYB|L Chain L, Rnap At 3.2ang
pdb|4B1O|L Chain L, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|M Chain M, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 92
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>pdb|1PVH|B Chain B, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|D Chain D, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 169
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 9 RFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R VV GT + RD KI+N ++ ++ + + +ILR L L + Y + H
Sbjct: 74 RIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGH 130
>pdb|2Q7N|B Chain B, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
pdb|2Q7N|D Chain D, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
Length = 180
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 9 RFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R VV GT + RD KI+N ++ ++ + + +ILR L L + Y + H
Sbjct: 85 RIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGH 141
>pdb|1EMR|A Chain A, Crystal Structure Of Human Leukemia Inhibitory Factor
(Lif)
Length = 159
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 9 RFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPH 65
R VV GT + RD KI+N ++ ++ + + +ILR L L + Y + H
Sbjct: 64 RIVVYLGTSLGNITRDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGH 120
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 40 HTIGNILRMQLHRDENVLFAGYKLPHPLQYKI 71
H G +R L RDE++L G + P +YK+
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKV 848
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 40 HTIGNILRMQLHRDENVLFAGYKLPHPLQYKI 71
H G +R L RDE++L G + P +YK+
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKV 848
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 40 HTIGNILRMQLHRDENVLFAGYKLPHPLQYKI 71
H G +R L RDE++L G + P +YK+
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKV 848
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 44 NILRMQLHRD-ENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
N+L L D E + AG L HP +H T +Q Y+ + +D+D+ LD K
Sbjct: 286 NLLEKMLVLDAEQRVTAGEALAHP----YFESLHDTEDEPQVQKYDDSFDDVDRTLDEWK 341
>pdb|3FHN|A Chain A, Structure Of Tip20p
pdb|3FHN|B Chain B, Structure Of Tip20p
pdb|3FHN|C Chain C, Structure Of Tip20p
pdb|3FHN|D Chain D, Structure Of Tip20p
Length = 706
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 15 GTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDEN----VLFAGYKLPHPLQYK 70
G K E TK+ + + EE T L R N VL+ L + +
Sbjct: 197 GLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERPLSRSNNNQEPVLWNFKSLANNFNVR 256
Query: 71 IIVRIHTTSQSSPMQAYNQAIND 93
H TS SS ++ Y Q +ND
Sbjct: 257 FTYHFHATSSSSKIETYFQFLND 279
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
In Complex With 2'p- Amp
Length = 316
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
++EN Y + +PL+ KI+ +I+ +SP + Y+ IN
Sbjct: 1 KEENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEIN 41
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of
Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
++EN Y + +PL+ KI+ +I+ +SP + Y+ IN
Sbjct: 1 KEENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEIN 41
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum
With 2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92
++EN Y + +PL+ KI+ +I+ +SP + Y+ IN
Sbjct: 1 KEENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEIN 41
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 239 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 298
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 299 NSRDLSHSIMERALFHMD 316
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 239 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 298
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 299 NSRDLSHSIMERALFHMD 316
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 239 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 298
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 299 NSRDLSHSIMERALFHMD 316
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 240 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 299
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 300 NSRDLSHSIMERALFHMD 317
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 239 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 298
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 299 NSRDLSHSIMERALFHMD 316
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 808 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 867
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 868 NSRDLSHSIMERALFHMD 885
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 809 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 868
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 869 NSRDLSHSIMERALFHMD 886
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
S + + G+ +R L R+E++L G + P +YK+ T + + Y+ A
Sbjct: 809 SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAG 868
Query: 92 NDLDKELDTLKSAFEFLD 109
N D ++ A +D
Sbjct: 869 NSRDLSHSIMERALFHMD 886
>pdb|4F7A|A Chain A, Crystal Structure Of A Susd Homolog (Bvu_2203) From
Bacteroides Vulgatus Atcc 8482 At 1.85 A Resolution
Length = 511
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 66 PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKS 103
P+ Y + T S + +AY +DLDK +D L +
Sbjct: 134 PIVYSKFGKNETNSVDTQEEAYKAFFDDLDKAVDALDT 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,285
Number of Sequences: 62578
Number of extensions: 104233
Number of successful extensions: 415
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 25
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)