BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033831
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis
thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/106 (90%), Positives = 104/106 (98%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FE
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106
>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium
discoideum GN=polr2j PE=3 SV=1
Length = 120
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 83/105 (79%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E FV+P+G KKV+ RDTKI NA+ FTI +E+HTIGN++RMQL D++++FAG
Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
Y++PHPL++ + +RI T + ++P++ +++ L +E +L+++F
Sbjct: 61 YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens
GN=POLR2J PE=1 SV=1
Length = 117
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus
GN=POLR2J PE=3 SV=1
Length = 117
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus
GN=Polr2j PE=2 SV=1
Length = 117
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila
melanogaster GN=Rpb11 PE=3 SV=1
Length = 117
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+PHPL++K ++RI TT+ SP +A+ AI DL EL + F+
Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106
>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae
GN=Rpb11 PE=2 SV=2
Length = 117
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 76/105 (72%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YKLPHPL++K ++RI TTS+ SP +A+ AI DL EL + F
Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens
GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens
GN=POLR2J3 PE=2 SV=1
Length = 115
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAG
Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F
Sbjct: 60 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1
Length = 122
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK+ E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK PHPL++KI++R+ TT+ ++P A AI DL EL L+
Sbjct: 60 YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLE 101
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1
Length = 122
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAP +E F++ + KK E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAG
Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102
YK PHPL++KI++RI TT+ ++P A AI DL EL L+
Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLE 101
>sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1
SV=1
Length = 120
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MNAPDR+E F++ EG K+ + DTK NA T E+E+HT+GN++R +L D VLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106
YK+ HP + +RI TT P A A N + +L LK+ FE
Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb11 PE=1 SV=1
Length = 123
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
MN P+RYE + G KV+YE D+K NAA T+E+E+HT+ N+L QL DE VLFAG
Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59
Query: 61 YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
YK+PHPL + I+R+ T SP Q A L L+ +K F
Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104
>sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+ G KKV+ K + F I+ E+HTIGN++++QL +D VLFA Y
Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDKG-DCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + +N++ ++ TLK F
Sbjct: 67 RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENF 109
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC19 PE=1 SV=1
Length = 142
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQ 89
+ASF I E+HT+GN LR + ++ +V F GY +PHP + + +RI T +++ + A +
Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119
Query: 90 AINDLDKELDTLKSAF 105
+ DL D ++S F
Sbjct: 120 GLKDLMDLCDVVESKF 135
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + ++ + ++ TL+ F
Sbjct: 67 RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETF 109
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1
Length = 126
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 2 NAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGY 61
N P+ + V+P G +KV + K + FTI+ E+HTIGN+++ L +D V FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDKG-DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 62 KLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 105
+ PHPLQ I + I + ++ + ++ + ++ TL+ F
Sbjct: 67 RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETF 109
>sp|A4YHV0|RPOL_METS5 DNA-directed RNA polymerase subunit L OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoL PE=3 SV=1
Length = 90
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHT 77
+++ ER+ + N I+ E+HT+GN++ +L + V+ A Y LPHPL+ +++++I T
Sbjct: 2 EIAVEREEE--NYLELRIQGEDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIKIKT 59
Query: 78 TSQSSPMQAYNQAINDL 94
SP +A N+AI D+
Sbjct: 60 DGTISPREALNRAIEDV 76
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc19 PE=2 SV=1
Length = 125
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 28 INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
+ + +F I++E+HT+GN LR + ++ V F GY +PHP + K+ RI T ++ +
Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91
Query: 88 NQAINDLDKELDTLKSAF 105
+ ++DL D + F
Sbjct: 92 RKGLDDLIDLCDAVTEKF 109
>sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis briggsae GN=CBG10036 PE=3 SV=1
Length = 145
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T
Sbjct: 54 SFEQDP---SNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++ +A +++ T++ FE
Sbjct: 111 GINALEVLVKAFESVEQVFSTIRGKFE 137
>sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis elegans GN=F58A4.9 PE=3 SV=1
Length = 144
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
S+E+D + + + E+HTIGN ++ L R + V F GY +PHPL+ KI+ R+ T
Sbjct: 53 SFEQDP---SNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109
Query: 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106
+ ++ +A +++ T++ FE
Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFE 136
>sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL
PE=1 SV=1
Length = 92
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L R V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70
Query: 89 QAINDL 94
+AI ++
Sbjct: 71 KAIENI 76
>sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoL
PE=3 SV=1
Length = 93
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I+ EEHT+GN+L+ L + V FA Y PHPL II++I T SP +A
Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70
Query: 89 QAI----NDLDKELDTLKS 103
+AI D +K ++ +KS
Sbjct: 71 KAIELAEEDTNKFIEEVKS 89
>sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1
Length = 90
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I+ EEHTIGN+L+ L + V FA Y LPHPL I ++I T S +A
Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C3N7I8|RPOL_SULIY DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C3NFY8|RPOL_SULIN DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C3MXM0|RPOL_SULIM DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C3MRD1|RPOL_SULIL DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C4KIP6|RPOL_SULIK DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|C3MZG6|RPOL_SULIA DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoL PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N IE E+HT+GN++ L + V FA Y PHPL KIIV+I T +P A
Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALL 70
Query: 89 QAI 91
+AI
Sbjct: 71 KAI 73
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus
musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQKGLNEL 103
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo
sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + +N+L
Sbjct: 74 HPSESKINLRIQTRGTLPAVEPFQRGLNEL 103
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ A+F E+HT+GN L L ++ V F+GY +PHP ++ +RI T S + ++
Sbjct: 34 DCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLL 93
Query: 89 QAINDL 94
Q + D+
Sbjct: 94 QGLTDI 99
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus
GN=POLR1D PE=2 SV=1
Length = 133
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VPEGTKKVSYERDTKIINAA-------SFTIEREEHTIGNILRMQLHRDENVLFAGYKLP 64
+ EG +K + E ++ AA +F + E+HT+GN LR + ++ V F GY
Sbjct: 18 MAEGERKTALE----MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTT 73
Query: 65 HPLQYKIIVRIHTTSQSSPMQAYNQAINDL 94
HP + KI +RI T ++ + + + DL
Sbjct: 74 HPSESKINLRIQTRGALPAVEPFQRGLTDL 103
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus
laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+ +F + E+HT+GN LR + ++ V F GY + HP + KI RI T + ++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 89 QAINDLDKELDTLKSAFE 106
+ +N+L + + FE
Sbjct: 82 RGLNELVDVCQHVLNTFE 99
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio
GN=polr1d PE=3 SV=1
Length = 112
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
+F + E+HT+GN LR + + ++V F GY + HP + KI RI T +
Sbjct: 21 GCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLR 80
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
+N+L D K + +A
Sbjct: 81 NGLNNL---TDVCKHVLQTFEA 99
>sp|Q5JE88|RPOL_PYRKO DNA-directed RNA polymerase subunit L OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoL PE=3
SV=1
Length = 94
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL------QYKIIVRIHTTSQSS 82
N F +E E+HT N+L LH +E+V FAGY + HP+ ++K++ T + +
Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70
Query: 83 PMQAYNQAINDLDKELDTLKSAFE 106
+A + + + L+ K+A E
Sbjct: 71 LEEAAQKIFDRAREVLEAWKAAIE 94
>sp|B6YTH7|RPOL_THEON DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus
(strain NA1) GN=rpoL PE=3 SV=1
Length = 95
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH +E+V FAGY + HP + K R+ T + +P Q
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQV 70
Query: 87 YNQA 90
+A
Sbjct: 71 LEEA 74
>sp|C5A5J3|RPOL_THEGJ DNA-directed RNA polymerase subunit L OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoL PE=3 SV=1
Length = 95
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L LH D++V FA Y + HP + K +I T + SP +A
Sbjct: 11 NTFEFYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEA 70
Query: 87 YNQAINDL-DKE---LDTLKSAFE 106
+A + D+ L+ KSA E
Sbjct: 71 LEKAAQRVFDRARAVLEAWKSAIE 94
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1
Length = 105
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91
+F E HT+GN L+ + R V F GY +PHP + K+ RI + + + + +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77
Query: 92 NDLDKELDTLKSAFE 106
DL+ D FE
Sbjct: 78 EDLEGLCDHTIVTFE 92
>sp|C6A1R5|RPOL_THESM DNA-directed RNA polymerase subunit L OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoL PE=3 SV=1
Length = 95
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQA 86
N F + E+HT N+L LH +++V FA Y + HP + K RI T + +P +A
Sbjct: 11 NLLEFYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPEKA 70
Query: 87 YNQAINDL-DKELDTLK 102
+A + D+ D L+
Sbjct: 71 LEEAAQKIFDRAKDVLE 87
>sp|Q5UQD9|YR470_MIMIV Putative DNA directed RNA polymerase subunit R470 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R470 PE=1 SV=1
Length = 357
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 38 EEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIV--RIHTTSQSSPMQAYNQAINDLD 95
E+HT+G IL L + E V AGY +PH L KI+V +++ S+ P++ N I L
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
Query: 96 K 96
K
Sbjct: 345 K 345
>sp|B1L7Q7|RPOL_KORCO DNA-directed RNA polymerase subunit L OS=Korarchaeum cryptofilum
(strain OPF8) GN=rpoL PE=3 SV=1
Length = 98
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N I E HT+ + L +L+ + V FAGY +PHPL+ + ++ + +P +
Sbjct: 11 NEIRVLIRGETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLK 70
Query: 89 QAINDLDKELDTLKSAF 105
AI L ++ + + ++F
Sbjct: 71 GAIRRLMEKYEIIGNSF 87
>sp|O30032|RPOL_ARCFU DNA-directed RNA polymerase subunit L OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoL PE=3 SV=1
Length = 86
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 24 DTKIINAAS----FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTS 79
+ KII+ I+ E HT N+L+ L DE+V+ A Y +PHPL + + I TS
Sbjct: 2 EVKIIDIGEDYVRLVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYI-KTS 60
Query: 80 QSSPMQAYNQAINDLDKELDTL 101
P++A +A + +TL
Sbjct: 61 GVDPLEAVKRANEKIIAACNTL 82
>sp|O27372|RPOL_METTH DNA-directed RNA polymerase subunit L OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoL PE=3 SV=1
Length = 85
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
N E E HT+ N+LR L DE V A Y + HP+ + + I S ++A
Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68
Query: 89 QAIND 93
+ + D
Sbjct: 69 ETLRD 73
>sp|P57671|RPOL_PYRHO DNA-directed RNA polymerase subunit L OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoL PE=3 SV=1
Length = 95
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 33 FTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQAYNQA 90
F +E E+HT N+L L D +V F Y + HP+ K R+ T + +P +A +A
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
Query: 91 INDLDKELDTLKSAFEFLDA 110
+ A E LDA
Sbjct: 75 ARKI------FNRAKEVLDA 88
>sp|Q8U4N1|RPOL_PYRFU DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL
PE=3 SV=1
Length = 95
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQY--KIIVRIHTTSQSSPMQA 86
N F +E E+HT N+L L + +V F Y + HP+ K R+ T + +P +A
Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70
Query: 87 YNQAINDLDKELDTLKSAFE 106
+A + + + A+E
Sbjct: 71 LEEAAKKIFERAKEVLEAWE 90
>sp|Q65229|RPB3_ASFM2 Putative DNA-directed RNA polymerase subunit 3 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-121 PE=3 SV=2
Length = 359
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 31 ASFTIEREEHTIGNILRMQLHR-DENVLFAGYK-LPHPLQYKIIVRIHTTSQSSPMQAYN 88
A TI+ E HTIGN+L+ ++ ++ F GY+ +PH Q ++ IH SQ +
Sbjct: 279 AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCVPHK-QEMVLTIIHKASQEDLITLLE 337
Query: 89 QAINDLDKELDTLKSAFEFLDA 110
++I ++ + TL+ + L A
Sbjct: 338 KSIQNIIQMFQTLEKNIDELIA 359
>sp|P0C9E8|RPB3_ASFK5 Putative DNA-directed RNA polymerase subunit 3 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-125 PE=3 SV=1
Length = 359
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 31 ASFTIEREEHTIGNILRMQLHR-DENVLFAGYK-LPHPLQYKIIVRIHTTSQSSPMQAYN 88
A TI+ E HTIGN+L+ ++ ++ F GY+ +PH Q ++ IH SQ +
Sbjct: 279 AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCIPHK-QEMVLTIIHKASQEDLITLLE 337
Query: 89 QAINDLDKELDTLK 102
++I ++ + TL+
Sbjct: 338 KSIQNIIQIFQTLE 351
>sp|Q9V2M4|RPOL_PYRAB DNA-directed RNA polymerase subunit L OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoL PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 32 SFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP--LQYKIIVRIHTTSQSSPMQAYNQ 89
F +E E+HT N+L L + +V F Y + HP + K R+ T + +P +A +
Sbjct: 14 EFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEE 73
Query: 90 A---INDLDKE-LDTLKSA 104
A I D KE LD + A
Sbjct: 74 AAKKIFDRAKEVLDAWEKA 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,709,388
Number of Sequences: 539616
Number of extensions: 1350720
Number of successful extensions: 3625
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3561
Number of HSP's gapped (non-prelim): 75
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)