Query 033831
Match_columns 110
No_of_seqs 104 out of 470
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_K DNA-directed RNA polyme 100.0 4.5E-51 1.5E-55 288.4 11.8 107 1-108 1-107 (123)
2 1twf_K B13.6, DNA-directed RNA 100.0 1.8E-50 6E-55 284.3 13.7 107 1-107 1-107 (120)
3 1xpp_A TA1416, DNA-directed RN 100.0 7.4E-40 2.5E-44 228.8 11.4 96 12-108 4-99 (115)
4 2pa8_L DNA-directed RNA polyme 100.0 3.6E-39 1.2E-43 217.3 11.3 90 20-109 2-91 (92)
5 2pa8_D DNA-directed RNA polyme 95.4 0.013 4.5E-07 44.6 3.8 35 19-55 3-38 (265)
6 1twf_C B44.5, DNA-directed RNA 94.3 0.094 3.2E-06 41.4 6.2 40 68-107 225-264 (318)
7 1bdf_A RNA polymerase alpha su 93.6 0.072 2.5E-06 40.2 4.2 44 18-63 13-61 (235)
8 1twf_C B44.5, DNA-directed RNA 93.5 0.031 1.1E-06 44.2 2.2 36 18-55 7-43 (318)
9 3lu0_A DNA-directed RNA polyme 93.2 0.07 2.4E-06 42.4 3.8 48 54-101 178-231 (329)
10 1bdf_A RNA polymerase alpha su 93.2 0.14 4.8E-06 38.6 5.2 47 56-102 180-232 (235)
11 2a6h_A DNA-directed RNA polyme 93.1 0.13 4.4E-06 40.5 5.1 47 55-101 173-225 (315)
12 2a6h_A DNA-directed RNA polyme 92.9 0.064 2.2E-06 42.3 3.1 39 18-58 10-53 (315)
13 3h0g_C DNA-directed RNA polyme 92.4 0.12 4E-06 40.6 4.0 39 16-56 4-43 (297)
14 3h0g_C DNA-directed RNA polyme 91.3 0.17 5.8E-06 39.7 3.8 40 68-107 226-265 (297)
15 2pa8_D DNA-directed RNA polyme 91.3 0.44 1.5E-05 36.0 6.0 41 68-108 223-263 (265)
16 3lu0_A DNA-directed RNA polyme 91.3 0.14 4.6E-06 40.7 3.2 36 27-62 20-60 (329)
17 3ba3_A Protein LP_0091, pyrido 65.0 4.6 0.00016 28.0 2.8 31 45-76 53-83 (145)
18 4aq4_A SN-glycerol-3-phosphate 40.0 35 0.0012 25.2 4.3 29 78-106 390-418 (419)
19 3u7z_A Putative metal binding 39.9 55 0.0019 21.4 4.8 36 14-49 4-39 (101)
20 1y80_A Predicted cobalamin bin 37.4 27 0.00092 24.5 3.2 38 28-65 89-128 (210)
21 2i2x_B MTAC, methyltransferase 35.0 44 0.0015 24.5 4.1 40 27-66 123-164 (258)
22 3ljm_A Coil Ser L9C; de novo d 33.2 54 0.0018 16.9 3.7 25 84-108 3-27 (31)
23 3ezx_A MMCP 1, monomethylamine 31.4 34 0.0012 24.6 2.9 38 28-65 93-132 (215)
24 1uct_A Immunoglobulin alpha FC 30.8 22 0.00075 24.5 1.7 22 28-49 189-213 (218)
25 1jss_A Stard4, cholesterol-reg 30.8 57 0.0019 23.0 4.0 52 57-108 167-224 (224)
26 1p6f_A NKP46, natural cytotoxi 28.8 12 0.0004 26.7 0.0 13 38-50 228-240 (242)
27 1c1y_B Proto-onkogene serine/t 28.6 47 0.0016 20.9 2.8 20 73-92 14-33 (77)
28 4ano_A ESSB; membrane protein, 28.1 9.6 0.00033 28.3 -0.6 61 25-88 20-80 (219)
29 2yxb_A Coenzyme B12-dependent 28.1 57 0.0019 22.2 3.5 38 27-64 18-57 (161)
30 2l05_A Serine/threonine-protei 25.9 55 0.0019 21.5 2.8 21 73-93 30-50 (95)
31 2qn6_B Translation initiation 25.8 58 0.002 20.8 3.0 41 58-101 44-84 (93)
32 1ccw_A Protein (glutamate muta 25.8 74 0.0025 21.0 3.6 35 30-64 6-42 (137)
33 2al3_A TUG long isoform; TUG U 25.4 61 0.0021 20.9 3.0 23 72-94 21-43 (90)
34 3v26_X ORF3, ORF95, probable s 25.0 1.2E+02 0.0041 19.1 4.5 35 72-107 60-94 (101)
35 2wkb_A Macrophage migration in 24.2 1.4E+02 0.0049 19.0 4.8 26 71-96 1-28 (125)
36 3hbx_A GAD 1, glutamate decarb 24.0 2.6E+02 0.0089 21.9 10.9 71 27-100 372-443 (502)
37 3pbp_B Nucleoporin NUP116/NSP1 24.0 84 0.0029 21.8 3.7 31 38-68 107-146 (148)
38 4e17_B Catenin alpha-1; four h 23.7 69 0.0024 17.8 2.6 23 84-106 14-36 (40)
39 2dgk_A GAD-beta, GADB, glutama 23.0 2.5E+02 0.0085 21.3 7.8 72 28-102 361-435 (452)
40 1t4b_A Aspartate-semialdehyde 22.6 2.7E+02 0.0091 21.5 6.8 55 37-92 235-296 (367)
41 1tke_A Threonyl-tRNA synthetas 22.4 1.6E+02 0.0055 20.8 5.1 53 40-95 73-128 (224)
42 2xcz_A Possible ATLS1-like lig 22.3 1.4E+02 0.0049 18.5 4.4 27 71-97 2-29 (115)
43 3dhx_A Methionine import ATP-b 21.6 86 0.003 19.9 3.2 37 30-66 66-102 (106)
44 3tcm_A Alanine aminotransferas 21.2 91 0.0031 24.4 3.9 57 47-106 443-499 (500)
45 3ny5_A Serine/threonine-protei 20.9 78 0.0027 20.7 2.8 19 74-92 27-45 (96)
46 1wxm_A A-RAF proto-oncogene se 20.8 63 0.0022 20.8 2.3 19 74-92 21-39 (86)
47 1rrb_A RAF-1 RBD, RAF proto-on 20.0 82 0.0028 21.0 2.8 19 74-92 32-50 (107)
No 1
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-51 Score=288.45 Aligned_cols=107 Identities=46% Similarity=0.684 Sum_probs=105.9
Q ss_pred CCCCccccceeeCCCceeeEeeccCCCcceeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCC
Q 033831 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (110)
Q Consensus 1 mn~p~~~e~~~l~~~~~Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~ 80 (110)
||||||||+|+| +|++||++..|++++|+++|+|.||||||||+||++|+++|+|.||||+|||||+++++|||||+++
T Consensus 1 mnap~~~e~f~l-~ge~Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~ 79 (123)
T 3h0g_K 1 MNQPERYELIEL-MGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVED 79 (123)
T ss_dssp CCCCCGGGTSSC-SSCCSCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSS
T ss_pred CCCCCccceeEe-CCCcceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033831 81 SSPMQAYNQAINDLDKELDTLKSAFEFL 108 (110)
Q Consensus 81 ~~p~~al~~a~~~l~~~~~~l~~~f~~a 108 (110)
++|++||++||++|++.|++|++.|+++
T Consensus 80 ~~p~eaL~~al~~L~~~~~~l~~~F~~~ 107 (123)
T 3h0g_K 80 CSPKQVIVDAAKSLITHLEEIKVNFMRE 107 (123)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886
No 2
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=1.8e-50 Score=284.26 Aligned_cols=107 Identities=44% Similarity=0.703 Sum_probs=106.2
Q ss_pred CCCCccccceeeCCCceeeEeeccCCCcceeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCC
Q 033831 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (110)
Q Consensus 1 mn~p~~~e~~~l~~~~~Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~ 80 (110)
||||||||+|+|+||++||++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+|||||+++++|||||+|+
T Consensus 1 mnap~~~e~f~l~~ge~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (120)
T 1twf_K 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG 80 (120)
T ss_dssp CCSCCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTT
T ss_pred CCCCCccceeecCCCCceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033831 81 SSPMQAYNQAINDLDKELDTLKSAFEF 107 (110)
Q Consensus 81 ~~p~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
++|++||++||++|++.|++++++|++
T Consensus 81 ~~p~eaL~~a~~~L~~~~~~l~~~f~~ 107 (120)
T 1twf_K 81 YDPKDALKNACNSIINKLGALKTNFET 107 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988
No 3
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=100.00 E-value=7.4e-40 Score=228.80 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=89.5
Q ss_pred eCCCceeeEeeccCCCcceeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHH
Q 033831 12 VPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91 (110)
Q Consensus 12 l~~~~~Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~ 91 (110)
-++|++|+++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+|||||+++++|||||+|+. |.+||++|+
T Consensus 4 ~~~~~~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p~eaL~~al 82 (115)
T 1xpp_A 4 QRERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAV 82 (115)
T ss_dssp -----CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-HHHHHHHHH
T ss_pred ccccccceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-hHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 033831 92 NDLDKELDTLKSAFEFL 108 (110)
Q Consensus 92 ~~l~~~~~~l~~~f~~a 108 (110)
++|++.|++|++.|++|
T Consensus 83 ~~L~~~~~~l~~~f~~a 99 (115)
T 1xpp_A 83 RKLSKLYEDLGTQFQKE 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 4
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=100.00 E-value=3.6e-39 Score=217.30 Aligned_cols=90 Identities=32% Similarity=0.405 Sum_probs=85.4
Q ss_pred EeeccCCCcceeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 033831 20 SYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELD 99 (110)
Q Consensus 20 ~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~ 99 (110)
++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++++|.+||++|+++|++.|+
T Consensus 2 eikvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~ 81 (92)
T 2pa8_L 2 EIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTS 81 (92)
T ss_dssp EEEEEEEETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 34555789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhc
Q 033831 100 TLKSAFEFLD 109 (110)
Q Consensus 100 ~l~~~f~~a~ 109 (110)
+++++|++|-
T Consensus 82 ~~~~~f~~~~ 91 (92)
T 2pa8_L 82 HYIDEIKGLT 91 (92)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999873
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=95.37 E-value=0.013 Score=44.57 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=27.1
Q ss_pred eEeeccCCCcceeEEEEecCCcchHHHHHHHHhcC-CC
Q 033831 19 VSYERDTKIINAASFTIEREEHTIGNILRMQLHRD-EN 55 (110)
Q Consensus 19 v~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~~-~~ 55 (110)
|++.. ..++.+.|.+.|-|+||||+||..|+.. |+
T Consensus 3 i~i~~--~~~~~~~f~l~g~~~t~~NalRRills~vp~ 38 (265)
T 2pa8_D 3 INLLH--KDDTRIDLVFEGYPLEFVNAIRRASMLYVPI 38 (265)
T ss_dssp EEEEE--ECSSEEEEEEESSCHHHHHHHHHHHHHSCCE
T ss_pred EEEEE--cCCCEEEEEEeCCCHHHHHHHHHHHHHcCcc
Confidence 44443 3478899999999999999999998774 54
No 6
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=94.29 E-value=0.094 Score=41.36 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=36.8
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033831 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107 (110)
Q Consensus 68 ~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
.+++.|.|-|+|.++|.+||.+|++-|.+.|+.|.+.+..
T Consensus 225 ~dkfif~VET~Gsi~Peeav~~A~kIL~~kl~~f~~~l~~ 264 (318)
T 1twf_C 225 ADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQ 264 (318)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999887654
No 7
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=93.59 E-value=0.072 Score=40.20 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=33.2
Q ss_pred eeEeeccCCCcceeEEEEe----cCCcchHHHHHHHHhc-CCCeeeeeeeC
Q 033831 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHR-DENVLFAGYKL 63 (110)
Q Consensus 18 Kv~~~~~~~~~n~~~~~i~----~EDHTLgNlLr~~L~~-~~~V~fAgY~v 63 (110)
+|++.. ..++.+.|.+. |-++||||+||..|+. .|+.-.-+-++
T Consensus 13 ~i~i~~--~~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~I 61 (235)
T 1bdf_A 13 LVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVEI 61 (235)
T ss_dssp EEEEEE--SSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred eEEEEE--ccCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEEE
Confidence 355554 35788999996 9999999999999987 57755444443
No 8
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=93.55 E-value=0.031 Score=44.15 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.8
Q ss_pred eeEeeccCCCcceeEEEEecCCcchHHHHHHHHhc-CCC
Q 033831 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHR-DEN 55 (110)
Q Consensus 18 Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~-~~~ 55 (110)
+|++.. ..++.+.|.+.|-|+||||.||..|+. .|.
T Consensus 7 ~I~i~~--~~~~~~kF~leG~~~tlaNALRRiLLSevPg 43 (318)
T 1twf_C 7 QVKIRE--ASKDNVDFILSNVDLAMANSLRRVMIAEIPT 43 (318)
T ss_dssp BCCCSC--CCSSEECCEEBSSCHHHHHHHHHHHHHCCCE
T ss_pred eEEEEE--ecCCEEEEEEEccChhHHHHHHHHHHHcCcc
Confidence 444443 457889999999999999999999987 454
No 9
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=93.23 E-value=0.07 Score=42.40 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCeeeeeeeCC-----CCC-CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033831 54 ENVLFAGYKLP-----HPL-QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (110)
Q Consensus 54 ~~V~fAgY~vp-----HPl-~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l 101 (110)
.=|.-+.|.|. ... .++..|-|.|+|+++|.+|+..|++-|++.+..|
T Consensus 178 sPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f 231 (329)
T 3lu0_A 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 (329)
T ss_dssp CCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTS
T ss_pred CceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44666777664 333 5899999999999999999999999999887654
No 10
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=93.15 E-value=0.14 Score=38.62 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=38.2
Q ss_pred eeeeeeeCCCC------CCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033831 56 VLFAGYKLPHP------LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102 (110)
Q Consensus 56 V~fAgY~vpHP------l~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~ 102 (110)
|.-+.|+++-. -.+++.+.|-|+|.++|.+||.+|++-|.+.|+.|.
T Consensus 180 v~~v~y~ve~~~v~~~~~~d~li~eIeT~Gsi~P~eal~~A~~iL~~~~~~f~ 232 (235)
T 1bdf_A 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (235)
T ss_dssp EEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred EEEEEEEccCccccccccCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45577776422 247899999999999999999999999999887664
No 11
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=93.12 E-value=0.13 Score=40.50 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=38.4
Q ss_pred CeeeeeeeCCC------CCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033831 55 NVLFAGYKLPH------PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (110)
Q Consensus 55 ~V~fAgY~vpH------Pl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l 101 (110)
.|.-|.|.+.- .-.+++.+.|-|+|.++|.+||.+|++-|++.|+.|
T Consensus 173 pv~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f 225 (315)
T 2a6h_A 173 PVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYF 225 (315)
T ss_dssp CEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred CceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35556776531 235789999999999999999999999999999877
No 12
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=92.92 E-value=0.064 Score=42.28 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=29.7
Q ss_pred eeEeeccCCCcceeEEEEe----cCCcchHHHHHHHHhcC-CCeee
Q 033831 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHRD-ENVLF 58 (110)
Q Consensus 18 Kv~~~~~~~~~n~~~~~i~----~EDHTLgNlLr~~L~~~-~~V~f 58 (110)
+|++.. ..++.+.|.+. |-++|+||+||..|+.. |+.-.
T Consensus 10 ~i~i~~--~~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~AI 53 (315)
T 2a6h_A 10 VFTVRT--QGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAV 53 (315)
T ss_dssp EEEEEE--ETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEEE--ccCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCceEE
Confidence 355543 35788999994 99999999999999874 55433
No 13
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.40 E-value=0.12 Score=40.55 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=31.0
Q ss_pred ceeeEeeccCCCcceeEEEEecCCcchHHHHHHHHhc-CCCe
Q 033831 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHR-DENV 56 (110)
Q Consensus 16 ~~Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~L~~-~~~V 56 (110)
..+|++.. ..++.+.|.+.|-|.||||.||..|+. .|..
T Consensus 4 ~p~I~i~~--~~~~~~~F~l~g~~~tiaNALRRiLLSeVPt~ 43 (297)
T 3h0g_C 4 ETHITIRN--ISKNSVDFVLTNTSLAVANSLRRVVLAEIPTV 43 (297)
T ss_dssp CCSBCCCC--BCSSEEEEEECSCCHHHHHHHHHHHHSSCCEE
T ss_pred CCeEEEEE--ccCCEEEEEEECCChhHHHHHHHHHHHcCccc
Confidence 34555554 466899999999999999999999987 4553
No 14
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.33 E-value=0.17 Score=39.66 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=37.0
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033831 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107 (110)
Q Consensus 68 ~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
.+++.+.|.|+|..+|.+++.+|++-|.+.++.|.+.++.
T Consensus 226 ~dkfif~VET~Gsl~p~eiv~~A~~iL~~kl~~f~~~L~~ 265 (297)
T 3h0g_C 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265 (297)
T ss_dssp CCCEEEEEEBCSSSCTTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999887753
No 15
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=91.28 E-value=0.44 Score=35.98 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=36.8
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033831 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEFL 108 (110)
Q Consensus 68 ~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~~~f~~a 108 (110)
.++..+.|.|+|..+|.+++.+|++-|.+.++.|.+.++..
T Consensus 223 ~d~~i~~VEt~Gsl~Pee~v~~A~~iL~~~~~~~~~~l~~~ 263 (265)
T 2pa8_D 223 EDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEV 263 (265)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999887653
No 16
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=91.27 E-value=0.14 Score=40.74 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=29.2
Q ss_pred CcceeEEEEe----cCCcchHHHHHHHHhc-CCCeeeeeee
Q 033831 27 IINAASFTIE----REEHTIGNILRMQLHR-DENVLFAGYK 62 (110)
Q Consensus 27 ~~n~~~~~i~----~EDHTLgNlLr~~L~~-~~~V~fAgY~ 62 (110)
.++.+.|.+. |-++|+||+||..|+. .|+.-.-+-+
T Consensus 20 ~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~ 60 (329)
T 3lu0_A 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 (329)
T ss_dssp TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEE
T ss_pred CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEE
Confidence 5789999998 9999999999999988 4664444433
No 17
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=64.98 E-value=4.6 Score=27.99 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCeeeeeeeCCCCCCcceEEEEE
Q 033831 45 ILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76 (110)
Q Consensus 45 lLr~~L~~~~~V~fAgY~vpHPl~~~i~irIq 76 (110)
---.+|.++|+|.|++|.-.-+- +..+||++
T Consensus 53 ~k~~ql~~Np~V~i~~~~~d~~~-~~~~IRi~ 83 (145)
T 3ba3_A 53 PALKVYDQNPDIAFITIPNDGTA-GNPYLRAQ 83 (145)
T ss_dssp THHHHHTTCCEEEEEEEECTTCT-TCCEEEEE
T ss_pred HHHHHHHhCCCEEEEEECCCCCc-cceEEEEE
Confidence 34678999999999999744332 46778876
No 18
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=40.02 E-value=35 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033831 78 TSQSSPMQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 78 ~~~~~p~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
.|+.+|.+||+++.+++.+.++.+.+..+
T Consensus 390 ~g~~t~e~al~~~~~~~~~~L~~y~k~~K 418 (419)
T 4aq4_A 390 TGKKTPQQALDTAVERGNQLLRRFEKSTK 418 (419)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888888777777776665543
No 19
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=39.91 E-value=55 Score=21.37 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.1
Q ss_pred CCceeeEeeccCCCcceeEEEEecCCcchHHHHHHH
Q 033831 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQ 49 (110)
Q Consensus 14 ~~~~Kv~~~~~~~~~n~~~~~i~~EDHTLgNlLr~~ 49 (110)
.|++++++..........+|.+.-+..||+.+|...
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~ 39 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESE 39 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHT
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHc
Confidence 588888888877777778889999999999998654
No 20
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.43 E-value=27 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred cceeEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCCC
Q 033831 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLPH 65 (110)
Q Consensus 28 ~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~vpH 65 (110)
+.-+..+..||-|++|-.+-..+++..+ |.+-|..+|.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~ 128 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEP 128 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 3455678899999999888887777654 5666666553
No 21
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=35.05 E-value=44 Score=24.52 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=31.5
Q ss_pred CcceeEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCCCC
Q 033831 27 IINAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLPHP 66 (110)
Q Consensus 27 ~~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~vpHP 66 (110)
.+.-+..++.|+-|++|-.+...+++..+ |.+-|..+|..
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e 164 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAE 164 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 34456678899999999999888888765 67888887654
No 22
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.16 E-value=54 Score=16.92 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 033831 84 MQAYNQAINDLDKELDTLKSAFEFL 108 (110)
Q Consensus 84 ~~al~~a~~~l~~~~~~l~~~f~~a 108 (110)
-+|+++-|..|.+.++-+++++++.
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888889999888888887653
No 23
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.42 E-value=34 Score=24.58 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=28.4
Q ss_pred cceeEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCCC
Q 033831 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLPH 65 (110)
Q Consensus 28 ~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~vpH 65 (110)
+.-+..++.||-|.+|-.+...+++..+ |.+-|=.+|.
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 132 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLN 132 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCH
Confidence 3445677899999999999999988765 5555655553
No 24
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=30.85 E-value=22 Score=24.53 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=5.9
Q ss_pred cceeEEEEec---CCcchHHHHHHH
Q 033831 28 INAASFTIER---EEHTIGNILRMQ 49 (110)
Q Consensus 28 ~n~~~~~i~~---EDHTLgNlLr~~ 49 (110)
.+.+++.+.| -|+|.+|++|..
T Consensus 189 S~~~~l~V~g~~~~~~t~~n~~~~~ 213 (218)
T 1uct_A 189 SNALELVVTDSIHQDYTTQNLILEH 213 (218)
T ss_dssp CCCEEEEEC----------------
T ss_pred CCcEEEEEecCCCcCCChhhhhhhh
Confidence 3556777765 599999999864
No 25
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=30.76 E-value=57 Score=22.99 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=33.4
Q ss_pred eeeeeeC-CCCC---CcceEEEEEeC-CCCCHHHHHHHHH-HHHHHHHHHHHHHhhhh
Q 033831 57 LFAGYKL-PHPL---QYKIIVRIHTT-SQSSPMQAYNQAI-NDLDKELDTLKSAFEFL 108 (110)
Q Consensus 57 ~fAgY~v-pHPl---~~~i~irIqT~-~~~~p~~al~~a~-~~l~~~~~~l~~~f~~a 108 (110)
..+||.+ |.|- ...+...++++ +|--|.-++..++ ..+.+.+..|++.+++|
T Consensus 167 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~~ 224 (224)
T 1jss_A 167 HPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRKA 224 (224)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cccEEEEEEcCCCCCceEEEEEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHhhC
Confidence 3466765 5443 24466666776 3445778888775 56788888898888765
No 26
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=28.82 E-value=12 Score=26.66 Aligned_cols=13 Identities=54% Similarity=0.711 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHH
Q 033831 38 EEHTIGNILRMQL 50 (110)
Q Consensus 38 EDHTLgNlLr~~L 50 (110)
.|||++||||-.|
T Consensus 228 ~~~~~~nl~r~~~ 240 (242)
T 1p6f_A 228 WDHTAQNLLRMGL 240 (242)
T ss_dssp -------------
T ss_pred ccchheeeeEEEe
Confidence 4999999998755
No 27
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.60 E-value=47 Score=20.91 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=16.9
Q ss_pred EEEEeCCCCCHHHHHHHHHH
Q 033831 73 VRIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 73 irIqT~~~~~p~~al~~a~~ 92 (110)
=.|+..+|.+..+||.+|++
T Consensus 14 T~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 14 TVVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEEECCTTCBHHHHHHHHHH
T ss_pred EEEEecCCcCHHHHHHHHHH
Confidence 35777889999999999986
No 28
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=28.06 E-value=9.6 Score=28.26 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=52.5
Q ss_pred CCCcceeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHH
Q 033831 25 TKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88 (110)
Q Consensus 25 ~~~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~ 88 (110)
.+ .+..++++..++--+-+.+...|+..++--| .-.|. -.++.+.|..+...+..+.+.++
T Consensus 20 ~k-~~~~~~~l~ks~ik~~~~~e~~lL~~~~~~f-~~~I~-~~eD~~~i~y~~~~~~~~f~~i~ 80 (219)
T 4ano_A 20 IN-DQPYTVIFQRAKLKMQDPLELEVLKEVDPCI-VRDID-VSEDEVKVVIKPPSSFLTFAAIR 80 (219)
T ss_dssp EE-ETTEEEEEEGGGCCCCSGGGGGGGGGSCSSS-EEEEE-ECSSEEEEEEECCTTCEEHHHHH
T ss_pred ec-CCeEEEEEEHHHhccCCHHHHHHHhccCCCC-CeEEE-EeCCEEEEEEEcCcccCcHHHHH
Confidence 45 7779999999999999999999999998888 77776 67899999999987777777664
No 29
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.05 E-value=57 Score=22.25 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=27.2
Q ss_pred CcceeEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCC
Q 033831 27 IINAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (110)
Q Consensus 27 ~~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~vp 64 (110)
.+.-+..++.++.|++|-.+...+++..+ |.+-|-.+|
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p 57 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT 57 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 34556678899999999888888877654 555555554
No 30
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.86 E-value=55 Score=21.47 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=17.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHH
Q 033831 73 VRIHTTSQSSPMQAYNQAIND 93 (110)
Q Consensus 73 irIqT~~~~~p~~al~~a~~~ 93 (110)
=.|+..+|.+..+||.+|++.
T Consensus 30 T~V~VrpG~tlrdAL~KaLk~ 50 (95)
T 2l05_A 30 TVVPARCGVTVRDSLKKALMM 50 (95)
T ss_dssp EEEECCTTCBHHHHHHHHHHH
T ss_pred EEEEecCCcCHHHHHHHHHHH
Confidence 357778899999999999863
No 31
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=25.84 E-value=58 Score=20.83 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=24.8
Q ss_pred eeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033831 58 FAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (110)
Q Consensus 58 fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l 101 (110)
.-=|.|-=| .-.|++++.+-....++|++|++.+.+.++..
T Consensus 44 vkI~~vgaP---~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~ 84 (93)
T 2qn6_B 44 IKIYTIGAP---RYRVDVVGTNPKEASEALNQIISNLIKIGKEE 84 (93)
T ss_dssp EEEEESSTT---EEEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCC---eEEEEEEecCHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555433 24566666544456677888888877766553
No 32
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.77 E-value=74 Score=20.96 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=26.1
Q ss_pred eeEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCC
Q 033831 30 AASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (110)
Q Consensus 30 ~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~vp 64 (110)
-+..++.++-|++|-.+...+++..+ |.+-|-.+|
T Consensus 6 vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p 42 (137)
T 1ccw_A 6 IVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP 42 (137)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 45678899999999999988888755 444454444
No 33
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=25.44 E-value=61 Score=20.89 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Q 033831 72 IVRIHTTSQSSPMQAYNQAINDL 94 (110)
Q Consensus 72 ~irIqT~~~~~p~~al~~a~~~l 94 (110)
..+|++.++.+..++|++||+..
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~ 43 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQ 43 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHh
Confidence 44566777888999999999763
No 34
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=25.03 E-value=1.2e+02 Score=19.13 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033831 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEF 107 (110)
Q Consensus 72 ~irIqT~~~~~p~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
.|++.-.+. +...|+..|++.|...+...++++..
T Consensus 60 ~l~ae~~~~-d~yaAID~a~dkLerQLrK~K~k~~~ 94 (101)
T 3v26_X 60 EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQ 94 (101)
T ss_dssp CEEEEECCS-SSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecC-CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466666543 78899999999999999999888753
No 35
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.18 E-value=1.4e+02 Score=19.00 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHHH
Q 033831 71 IIVRIHTTSQSSP--MQAYNQAINDLDK 96 (110)
Q Consensus 71 i~irIqT~~~~~p--~~al~~a~~~l~~ 96 (110)
+.|+|+|..+.++ .++|.+++.+++.
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala 28 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAIS 28 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHH
Confidence 4688999877666 4566666655544
No 36
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=24.01 E-value=2.6e+02 Score=21.87 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=41.2
Q ss_pred CcceeEEEEecCC-cchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 033831 27 IINAASFTIEREE-HTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDT 100 (110)
Q Consensus 27 ~~n~~~~~i~~ED-HTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~ 100 (110)
.-+-+.|.+.+.. .+. .-|...|.+ .++.+.+|..|--+...-.+||.+....+. +.+...++.|.+.++.
T Consensus 372 ~~~~v~f~~~~~~~~~~-~~l~~~L~~-~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~-edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 372 GVPLVAFSLKDSSCHTE-FEISDMLRR-YGWIVPAYTMPPNAQHITVLRVVIREDFSR-TLAERLVIDIEKVMRE 443 (502)
T ss_dssp SSSEEEEEESSCSSCCH-HHHHHHHHT-TTCBCCEEECCTTCTTCEEEEEECCTTCCH-HHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCCcCCH-HHHHHHHHh-CCcEEeeccCCcccCCceEEEEEeCCCCCH-HHHHHHHHHHHHHHHH
Confidence 3456677776532 222 244555543 577777888765456678899999877665 4444444444443333
No 37
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=23.99 E-value=84 Score=21.80 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCcchHHHHHHHHhcCCCeeeeeee---------CCCCCC
Q 033831 38 EEHTIGNILRMQLHRDENVLFAGYK---------LPHPLQ 68 (110)
Q Consensus 38 EDHTLgNlLr~~L~~~~~V~fAgY~---------vpHPl~ 68 (110)
..|-.-.--...|.+.++-+|.+|+ |+|+.+
T Consensus 107 ~~~~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~~ 146 (148)
T 3pbp_B 107 PNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAAE 146 (148)
T ss_dssp TTSHHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSCC
T ss_pred cchHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeeee
Confidence 3454444445567788999999997 777754
No 38
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=23.70 E-value=69 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033831 84 MQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 84 ~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
++-+-.-|+.+...++.|..+|.
T Consensus 14 kerIv~eCnavrqALQdLlseY~ 36 (40)
T 4e17_B 14 RERIVAECNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555553
No 39
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=22.98 E-value=2.5e+02 Score=21.26 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=43.0
Q ss_pred cceeEEEEecCC---cchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033831 28 INAASFTIEREE---HTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102 (110)
Q Consensus 28 ~n~~~~~i~~ED---HTLgNlLr~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~ 102 (110)
.+.+.|.+.+.+ .+ ..-|...|.+ .++...+|..|--+...-.|||-.....+ .+-+.+.++.|.+.++.+.
T Consensus 361 ~~~v~f~~~~~~~~~~~-~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRis~~~~~t-~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 361 IPAVCFKLKDGEDPGYT-LYDLSERLRL-RGWQVPAFTLGGEATDIVVMRIMCRRGFE-MDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp SSEEEEEECTTCCCSCC-HHHHHHHHHH-TTCBCCEEECSTTCTTCEEEEEECCTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCcccccCC-HHHHHHHHHh-cCCeeeeeeCCcccCCeEEEEEEecCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 356667776532 12 1345555554 37766677765445556789999876555 4666666666655555554
No 40
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=22.63 E-value=2.7e+02 Score=21.54 Aligned_cols=55 Identities=7% Similarity=-0.151 Sum_probs=41.4
Q ss_pred cCCcc-----hHHHHHHHHh--cCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHH
Q 033831 37 REEHT-----IGNILRMQLH--RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 37 ~EDHT-----LgNlLr~~L~--~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~ 92 (110)
+..|| +.+-++..|- ..-.|.|...+||=+--.-.-+.++++...+. +.++++++
T Consensus 235 ~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~-eei~~~l~ 296 (367)
T 1t4b_A 235 DNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSI-PTVEELLA 296 (367)
T ss_dssp TTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCH-HHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCH-HHHHHHHH
Confidence 44566 8888888874 34479999999999988889999999877665 44455544
No 41
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=22.38 E-value=1.6e+02 Score=20.83 Aligned_cols=53 Identities=8% Similarity=0.151 Sum_probs=34.5
Q ss_pred cchHHHHHHHHhc-CCCeeeeeeeCCCCCCcceEEEEEeCCCCCHH--HHHHHHHHHHH
Q 033831 40 HTIGNILRMQLHR-DENVLFAGYKLPHPLQYKIIVRIHTTSQSSPM--QAYNQAINDLD 95 (110)
Q Consensus 40 HTLgNlLr~~L~~-~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~--~al~~a~~~l~ 95 (110)
||...+|...+.+ .|++. ..+-|++.+.....+......++. +.+++-+++++
T Consensus 73 HS~~HlL~~A~~~~~~~~~---~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~iI 128 (224)
T 1tke_A 73 HSCAHLLGHAIKQLWPHTK---MAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELA 128 (224)
T ss_dssp HHHHHHHHHHHHHHSTTCE---ECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcE---EEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7999999999877 45543 234566777777777765556653 34555555444
No 42
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.33 E-value=1.4e+02 Score=18.52 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHHH
Q 033831 71 IIVRIHTTSQSSP-MQAYNQAINDLDKE 97 (110)
Q Consensus 71 i~irIqT~~~~~p-~~al~~a~~~l~~~ 97 (110)
+.++|+|..+.++ .+.|.+++.++...
T Consensus 2 P~i~i~~~~~~~~~~~~l~~~~~~~l~~ 29 (115)
T 2xcz_A 2 PLINIQASVPAVADANSLLQELSSKLAE 29 (115)
T ss_dssp CEEEEEESSCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhHHHHHHHHHHHHHH
Confidence 4678888765555 56666666665543
No 43
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.64 E-value=86 Score=19.87 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=28.4
Q ss_pred eeEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCC
Q 033831 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66 (110)
Q Consensus 30 ~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~vpHP 66 (110)
...+.+.|++--+..++.+.-.+.=.|+..||...|-
T Consensus 66 ~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~~ 102 (106)
T 3dhx_A 66 IMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEHH 102 (106)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC--
T ss_pred EEEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeecc
Confidence 3467778888788888888777777899999998873
No 44
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=21.21 E-value=91 Score=24.45 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=36.4
Q ss_pred HHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033831 47 RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 47 r~~L~~~~~V~fAgY~vpHPl~~~i~irIqT~~~~~p~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
...+++..+|.+..=.-..+....-.||+... .+.+-+.++++.|.+.++.+.++|+
T Consensus 443 ~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~i~~l~~~~~~~~~~~~ 499 (500)
T 3tcm_A 443 ALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL---PQEDKIPAVISRFTVFHEAFMSEYR 499 (500)
T ss_dssp HHHHHHHHCEECEESTTTCCCTTCCBEEEESC---SCTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556776553222222233456788775 3457788889999888888888875
No 45
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=20.93 E-value=78 Score=20.74 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=16.3
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033831 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~p~~al~~a~~ 92 (110)
.|+..+|.+..+||.+|++
T Consensus 27 ~V~VrpG~tlrdaL~KaLk 45 (96)
T 3ny5_A 27 VVPARCGVTVRDSLKKALM 45 (96)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4677789999999999986
No 46
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.76 E-value=63 Score=20.77 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=16.3
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033831 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~p~~al~~a~~ 92 (110)
.|+..+|.+..+||.+|++
T Consensus 21 ~V~VrpG~tlrdaL~KaLk 39 (86)
T 1wxm_A 21 VVTVRDGMSVYDSLDKALK 39 (86)
T ss_dssp EEECCSSCBSHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4677789999999999986
No 47
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=20.03 E-value=82 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=16.3
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033831 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~p~~al~~a~~ 92 (110)
.|+..+|.+..+||.+|++
T Consensus 32 ~V~VrpG~tlrdaL~KaLk 50 (107)
T 1rrb_A 32 VVNVRNGMSLHDCLMKALK 50 (107)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4677789999999999986
Done!