Query 033836
Match_columns 110
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08636 Pkr1: ER protein Pkr1 97.5 0.001 2.3E-08 45.7 7.8 60 19-85 11-70 (75)
2 PF14023 DUF4239: Protein of u 80.6 13 0.00028 27.3 7.3 63 13-77 123-188 (209)
3 PF10028 DUF2270: Predicted in 74.3 5.3 0.00011 31.6 4.0 33 43-78 28-60 (185)
4 PF07172 GRP: Glycine rich pro 72.5 3.9 8.5E-05 28.6 2.6 15 37-51 6-20 (95)
5 PRK11103 PTS system mannose-sp 62.8 33 0.00071 28.2 6.5 67 10-86 104-170 (282)
6 PF01027 Bax1-I: Inhibitor of 61.8 37 0.0008 24.2 5.9 64 14-80 79-143 (205)
7 PF13903 Claudin_2: PMP-22/EMP 55.8 60 0.0013 21.8 6.7 26 25-50 62-87 (172)
8 PF10011 DUF2254: Predicted me 53.0 5.9 0.00013 32.5 0.7 13 17-29 285-297 (371)
9 PF13567 DUF4131: Domain of un 49.4 70 0.0015 20.7 6.8 22 32-53 11-32 (176)
10 PRK09855 PTS system N-acetylga 47.4 69 0.0015 26.0 5.9 75 1-86 81-156 (263)
11 PF12811 BaxI_1: Bax inhibitor 46.0 1.7E+02 0.0037 24.2 8.2 69 12-83 122-199 (274)
12 COG4956 Integral membrane prot 45.4 57 0.0012 28.5 5.4 67 33-99 6-79 (356)
13 PF07869 DUF1656: Protein of u 44.8 44 0.00096 21.2 3.6 26 62-87 12-37 (58)
14 TIGR02802 Pal_lipo peptidoglyc 42.9 14 0.00031 24.0 1.2 28 77-104 48-75 (104)
15 PRK10755 sensor protein BasS/P 42.2 1.5E+02 0.0032 22.4 8.1 34 64-97 64-100 (356)
16 TIGR03025 EPS_sugtrans exopoly 40.8 1.9E+02 0.0041 23.6 7.5 29 26-54 55-83 (445)
17 PRK10747 putative protoheme IX 40.3 61 0.0013 26.0 4.6 19 34-52 3-21 (398)
18 PF07798 DUF1640: Protein of u 39.6 52 0.0011 24.3 3.8 33 21-53 143-175 (177)
19 PF13664 DUF4149: Domain of un 39.1 1.1E+02 0.0023 19.8 6.5 57 36-92 41-98 (101)
20 PF15071 TMEM220: Transmembran 37.7 1.4E+02 0.003 20.8 7.1 56 25-82 10-65 (104)
21 PF06341 DUF1056: Protein of u 37.6 1.2E+02 0.0026 20.5 5.0 26 58-83 31-58 (63)
22 PF10011 DUF2254: Predicted me 37.5 1.8E+02 0.0039 23.9 7.0 30 26-55 91-120 (371)
23 PF11337 DUF3139: Protein of u 35.9 52 0.0011 21.7 3.0 16 88-103 39-54 (85)
24 PF06432 GPI2: Phosphatidylino 35.3 47 0.001 26.4 3.2 23 60-82 192-214 (282)
25 PF00691 OmpA: OmpA family; I 35.3 30 0.00066 21.7 1.8 32 78-109 48-79 (97)
26 PRK11594 efflux system membran 35.2 69 0.0015 21.7 3.6 25 62-86 16-40 (67)
27 cd01406 SIR2-like Sir2-like: P 34.1 11 0.00024 28.1 -0.5 19 16-34 5-24 (242)
28 PF03613 EIID-AGA: PTS system 33.7 1.2E+02 0.0026 24.5 5.4 36 10-45 92-127 (264)
29 KOG3059 N-acetylglucosaminyltr 32.9 77 0.0017 26.9 4.2 35 51-85 185-219 (292)
30 COG4459 NapE Periplasmic nitra 32.8 57 0.0012 22.3 2.8 20 35-54 22-41 (62)
31 PHA03164 hypothetical protein; 32.7 95 0.0021 22.4 4.1 36 17-52 34-76 (88)
32 PRK15204 undecaprenyl-phosphat 32.3 3.1E+02 0.0068 23.3 7.8 16 24-39 78-93 (476)
33 KOG0054 Multidrug resistance-a 31.7 3.5E+02 0.0077 27.3 8.9 73 27-99 1040-1117(1381)
34 PF06196 DUF997: Protein of un 31.5 1.7E+02 0.0037 19.9 7.1 63 33-102 7-78 (80)
35 PF12983 DUF3867: Protein of u 31.4 36 0.00078 27.4 2.0 26 79-104 66-93 (186)
36 PRK11598 putative metal depend 30.8 1E+02 0.0022 27.2 4.8 9 79-87 90-98 (545)
37 PRK15071 lipopolysaccharide AB 30.7 2.7E+02 0.0057 21.9 7.6 56 34-90 274-334 (356)
38 TIGR01666 YCCS hypothetical me 29.8 2.6E+02 0.0057 25.6 7.3 66 24-95 99-165 (704)
39 TIGR01667 YCCS_YHJK integral m 29.6 3.8E+02 0.0082 24.4 8.2 55 9-63 30-87 (701)
40 cd00922 Cyt_c_Oxidase_IV Cytoc 29.0 1.1E+02 0.0025 22.4 4.1 39 63-101 81-127 (136)
41 TIGR00400 mgtE Mg2+ transporte 28.8 3.5E+02 0.0075 22.7 9.2 47 11-57 331-383 (449)
42 PF10268 Tmemb_161AB: Predicte 28.0 94 0.002 27.5 4.1 43 66-108 7-63 (486)
43 TIGR00828 EIID-AGA PTS system, 27.8 1.5E+02 0.0033 24.2 5.0 67 10-86 94-160 (271)
44 PF04109 APG9: Autophagy prote 27.8 1.1E+02 0.0024 26.2 4.4 65 32-96 207-278 (370)
45 PF10066 DUF2304: Uncharacteri 27.7 2.1E+02 0.0045 19.7 6.1 17 47-63 43-59 (115)
46 PF11820 DUF3339: Protein of u 27.6 37 0.0008 23.3 1.3 12 67-78 7-18 (68)
47 PF02656 DUF202: Domain of unk 26.9 1.6E+02 0.0036 18.2 5.9 45 33-77 14-61 (73)
48 PF15345 TMEM51: Transmembrane 26.7 26 0.00057 28.7 0.5 28 6-46 53-80 (233)
49 TIGR03595 Obg_CgtA_exten Obg f 26.7 78 0.0017 20.6 2.7 25 79-103 35-59 (69)
50 PF11992 DUF3488: Domain of un 26.5 2.6E+02 0.0056 22.4 6.1 32 68-100 168-199 (325)
51 COG4662 TupA ABC-type tungstat 26.0 1.8E+02 0.004 24.1 5.2 53 26-78 22-85 (227)
52 PF06637 PV-1: PV-1 protein (P 25.9 1.5E+02 0.0033 26.6 5.1 36 22-77 14-49 (442)
53 PF09597 IGR: IGR protein moti 25.8 28 0.0006 22.7 0.4 12 89-100 30-41 (57)
54 PF12805 FUSC-like: FUSC-like 25.4 3.2E+02 0.007 21.1 8.0 35 60-94 71-106 (284)
55 PF13812 PPR_3: Pentatricopept 25.3 48 0.001 16.7 1.2 10 91-100 25-34 (34)
56 TIGR02302 aProt_lowcomp conser 25.2 5E+02 0.011 24.9 8.4 61 30-94 18-79 (851)
57 TIGR02876 spore_yqfD sporulati 25.2 1.3E+02 0.0029 25.1 4.4 34 67-100 87-132 (382)
58 PF13727 CoA_binding_3: CoA-bi 25.0 24 0.00052 23.5 0.0 33 25-57 10-42 (175)
59 TIGR02588 conserved hypothetic 24.9 1.3E+02 0.0029 22.4 3.9 30 28-57 3-32 (122)
60 smart00165 UBA Ubiquitin assoc 24.8 27 0.00059 19.2 0.2 13 91-103 6-18 (37)
61 PRK10447 HflBKC-binding inner 24.3 3.6E+02 0.0078 21.3 6.7 50 32-81 105-155 (219)
62 COG3167 PilO Tfp pilus assembl 24.2 1.1E+02 0.0023 25.1 3.5 34 24-57 13-47 (211)
63 TIGR00540 hemY_coli hemY prote 24.0 1.8E+02 0.0038 23.4 4.7 14 35-48 4-17 (409)
64 PRK10862 SoxR reducing system 24.0 3E+02 0.0065 20.3 6.4 27 25-51 67-93 (154)
65 TIGR00145 FTR1 family protein. 23.9 4E+02 0.0088 21.7 7.2 75 15-100 138-213 (283)
66 PF13041 PPR_2: PPR repeat fam 23.4 42 0.00092 19.0 0.8 15 90-104 26-40 (50)
67 PF11947 DUF3464: Protein of u 23.2 1.7E+02 0.0037 22.4 4.3 32 24-55 91-122 (153)
68 PF05915 DUF872: Eukaryotic pr 22.9 1.6E+02 0.0035 21.2 3.9 46 30-75 41-88 (115)
69 cd06181 BI-1-like BAX inhibito 22.7 3.1E+02 0.0068 20.0 6.3 47 35-81 99-146 (212)
70 PF05975 EcsB: Bacterial ABC t 22.6 4.3E+02 0.0092 21.6 7.6 55 37-94 167-226 (386)
71 PF06081 DUF939: Bacterial pro 22.4 1.7E+02 0.0038 20.8 4.0 25 56-80 116-140 (141)
72 PF03605 DcuA_DcuB: Anaerobic 22.3 1E+02 0.0022 26.8 3.2 45 7-54 140-184 (364)
73 COG4325 Predicted membrane pro 22.1 39 0.00084 30.4 0.7 19 18-37 320-338 (464)
74 PRK06667 motB flagellar motor 22.1 1.4E+02 0.0031 23.1 3.7 33 25-58 13-45 (252)
75 PRK06742 flagellar motor prote 21.7 1.3E+02 0.0029 23.1 3.5 34 26-60 8-41 (225)
76 PF06653 Claudin_3: Tight junc 21.6 3.3E+02 0.0071 19.8 7.1 56 26-81 48-114 (163)
77 KOG3599 Ca2+-modulated nonsele 21.5 1.9E+02 0.0041 27.2 5.0 56 28-84 620-675 (798)
78 PF11882 DUF3402: Domain of un 21.5 72 0.0016 27.2 2.2 18 63-80 159-176 (409)
79 TIGR01598 holin_phiLC3 holin, 21.4 2.9E+02 0.0062 19.1 4.9 46 26-78 9-54 (78)
80 TIGR00756 PPR pentatricopeptid 21.3 70 0.0015 15.6 1.3 11 91-101 24-34 (35)
81 PRK10459 colanic acid exporter 21.2 4.3E+02 0.0093 21.1 7.6 24 59-82 445-468 (492)
82 PRK11380 hypothetical protein; 21.1 4.2E+02 0.0091 23.2 6.6 36 40-75 42-87 (353)
83 COG4858 Uncharacterized membra 21.0 2.5E+02 0.0053 23.3 5.0 53 24-76 156-208 (226)
84 PF11992 DUF3488: Domain of un 20.8 2.6E+02 0.0057 22.4 5.1 44 34-77 100-143 (325)
85 PRK15350 type III secretion sy 20.8 3.1E+02 0.0067 19.2 7.1 55 30-84 15-73 (88)
86 PF10861 DUF2784: Protein of U 20.1 1.5E+02 0.0032 21.4 3.2 25 56-80 6-30 (112)
87 PRK10873 hypothetical protein; 20.1 3.6E+02 0.0077 19.7 6.3 14 11-24 13-26 (131)
No 1
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=97.46 E-value=0.001 Score=45.70 Aligned_cols=60 Identities=23% Similarity=0.425 Sum_probs=50.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033836 19 GALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTG 85 (110)
Q Consensus 19 GALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tg 85 (110)
.-+-||+|.-=+.+.+.+|..|-+|+.+++..-. -.|+..|..|+..|+.-.|||..|-.
T Consensus 11 sIftPG~tp~li~a~n~sF~~L~~~l~~Ll~~t~-------niHfivL~~l~~~Lw~Sv~WFi~EL~ 70 (75)
T PF08636_consen 11 SIFTPGTTPTLIIATNVSFAALFLVLLALLFLTY-------NIHFIVLSFLALGLWASVNWFIAELK 70 (75)
T ss_pred HccCCCCChHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478999855577889999999888887776644 37999999999999999999998864
No 2
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=80.61 E-value=13 Score=27.28 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=32.4
Q ss_pred hHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHHHH
Q 033836 13 AEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSS---LILHVGFLLLIALTLFFLL 77 (110)
Q Consensus 13 aeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~---l~~HV~~Lv~i~~tLF~LL 77 (110)
+-.--+.+...++..|-|..+=+...++.+++ +++.++...++. .+.-+.+-..++.++|+++
T Consensus 123 ~R~~Rl~~~~~~lp~~~w~vl~~~~~~~~i~f--~~~~~~~~~~~~~~~~~~~~l~a~~i~~~l~li~ 188 (209)
T PF14023_consen 123 ARRTRLSQAQSSLPPPLWIVLLILAALLLIGF--LLASALFLGPNRRAHLIAIALFAASIALALFLIL 188 (209)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH--HHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778999999987655433333333 222233332222 1222333355667777755
No 3
>PF10028 DUF2270: Predicted integral membrane protein (DUF2270); InterPro: IPR014470 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.34 E-value=5.3 Score=31.64 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Q 033836 43 CLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLS 78 (110)
Q Consensus 43 cla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLn 78 (110)
..++||+++|+|.+.. |..+|+.+..+.|+|.-
T Consensus 28 ~~aa~lS~afss~~~~---h~~lL~~~~l~~~FL~i 60 (185)
T PF10028_consen 28 TTAAILSFAFSSPDAP---HYVLLFGMFLVTFFLFI 60 (185)
T ss_pred HHHHHHHhhccCCCCc---cHHHHHHHHHHHHHHHH
Confidence 4688999999998874 77888877777776654
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=72.46 E-value=3.9 Score=28.58 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 033836 37 FVMLGVCLAVMFGLA 51 (110)
Q Consensus 37 fllL~lcla~ML~lA 51 (110)
||+|+++||+.|.++
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555443
No 5
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=62.83 E-value=33 Score=28.21 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=39.4
Q ss_pred cchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033836 10 VSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTGL 86 (110)
Q Consensus 10 isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tgl 86 (110)
|++-.+=+-|-||.==-.=-|.++|-.+..++..+|. . ++. +.=+++++...+..| ++.|++-..|.
T Consensus 104 I~~iKtaLMGPlAGIGDSlf~gtl~pI~~~Ia~~lA~------~--Gn~-lGpil~~v~~~~~~~-~~r~~~~~~GY 170 (282)
T PRK11103 104 INGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAM------S--GSL-LGPLLFFILFNLVRL-ATRYYGVAYGY 170 (282)
T ss_pred HHHHHHHHcccchhchhHHHHHHHHHHHHHHHHHHHh------C--CCh-HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3333344888887433444599999988877766543 2 222 233455555555554 67777766664
No 6
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=61.79 E-value=37 Score=24.15 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHH
Q 033836 14 EAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSS-SDSSLILHVGFLLLIALTLFFLLSWF 80 (110)
Q Consensus 14 eAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~s-sd~~l~~HV~~Lv~i~~tLF~LLnwf 80 (110)
+.+.+|....-.+ +...-.++.+-++++.++-..|+.. .|.....-..+...++...+-+.++|
T Consensus 79 ~g~~~~~i~~~~~---~~~v~~a~~~T~~if~~l~~~a~~~~~d~~~~~~~l~~~l~~l~i~~l~~~f 143 (205)
T PF01027_consen 79 EGLLLGPISSFYD---PSIVLQAFLLTAAIFIALTLYAFFTKRDFTRWGGILFIGLIGLIIFGLVSIF 143 (205)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 4444444444434 4444455555555555555556544 45555555555555566666666655
No 7
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=55.78 E-value=60 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=19.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 033836 25 VNGPTWTTLKSAFVMLGVCLAVMFGL 50 (110)
Q Consensus 25 VN~PTW~~Lki~fllL~lcla~ML~l 50 (110)
.+.|+|....++|+.+++.+.++-.+
T Consensus 62 ~~~~~~~~~~~~~~~l~~~~~~~a~~ 87 (172)
T PF13903_consen 62 TTNPHWMRATIAFLILGLLLLLFAFV 87 (172)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888776655443
No 8
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=53.03 E-value=5.9 Score=32.49 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=11.0
Q ss_pred HHhhcCCCCCChh
Q 033836 17 FLGALAPGVNGPT 29 (110)
Q Consensus 17 llGALa~GVN~PT 29 (110)
-+=|||||+|-|+
T Consensus 285 A~RALSPgiNDP~ 297 (371)
T PF10011_consen 285 ALRALSPGINDPG 297 (371)
T ss_pred HHHHcCCCCCCCc
Confidence 3459999999997
No 9
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=49.38 E-value=70 Score=20.67 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033836 32 TLKSAFVMLGVCLAVMFGLAFS 53 (110)
Q Consensus 32 ~Lki~fllL~lcla~ML~lAf~ 53 (110)
.+-..++.+++++++.+.+.+.
T Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~ 32 (176)
T PF13567_consen 11 SLPFPLILLALLLLLLLLLLFF 32 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 10
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=47.42 E-value=69 Score=26.05 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCCC-CCCCcchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Q 033836 1 METHK-GKADVSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSW 79 (110)
Q Consensus 1 Me~~~-~~~~isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnw 79 (110)
||.++ ++..|.+-..=+-|-||.==-.=-|.++|-.+..++..+| . +++.+ .=+++++...+..| +.|
T Consensus 81 mEE~~~~~~~I~~iKtaLMGPlAGIGDSlf~gt~~pI~~~Ia~~lA------~--~Gn~l-gpil~~~~~~~~~~--~~~ 149 (263)
T PRK09855 81 MEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFA------S--QGNLL-GPILFFAVYLLIFF--LRV 149 (263)
T ss_pred HhhccCCHHHHHHHHHHHhccchhchhHHHHHHHHHHHHHHHHHHH------h--cCCcH-HHHHHHHHHHHHHH--HHH
Confidence 55332 3455666666677777643334459999987776665443 2 33333 33344444444443 777
Q ss_pred HHHHhcC
Q 033836 80 FLAQTGL 86 (110)
Q Consensus 80 fLa~tgl 86 (110)
++-..|.
T Consensus 150 ~~~~~GY 156 (263)
T PRK09855 150 GWTHVGY 156 (263)
T ss_pred HHHHHHH
Confidence 7665554
No 11
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=45.96 E-value=1.7e+02 Score=24.17 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=38.2
Q ss_pred hhHHHHHhhcCCC------CCChhHHHHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 12 SAEAVFLGALAPG------VNGPTWTTLKSAFVMLGVCLAVMFGLAFSSS---DSSLILHVGFLLLIALTLFFLLSWFLA 82 (110)
Q Consensus 12 SaeAVllGALa~G------VN~PTW~~Lki~fllL~lcla~ML~lAf~ss---d~~l~~HV~~Lv~i~~tLF~LLnwfLa 82 (110)
-.|-+++|+++.= -+.|- .+++-++.-++ ++.+||.+ +-.. -..-.--+..-.++++.+|-|.||.++
T Consensus 122 ~~EG~flG~iS~~f~~~~~~~~pG-Iv~qAvl~T~~-vf~~ml~l-Yk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~ 198 (274)
T PF12811_consen 122 VLEGVFLGGISAVFENIYYSRYPG-IVFQAVLGTFG-VFAVMLAL-YKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLS 198 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCc-HHHHHHHHHHH-HHHHHHHH-HHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999988621 12232 44444433332 45566653 2221 222334455666778888888888776
Q ss_pred H
Q 033836 83 Q 83 (110)
Q Consensus 83 ~ 83 (110)
=
T Consensus 199 l 199 (274)
T PF12811_consen 199 L 199 (274)
T ss_pred H
Confidence 4
No 12
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=45.39 E-value=57 Score=28.46 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhcCCchHHHHHHHHHHHHHHHHHHHH-HH--HHHhcCccHHHHHHHcCCC
Q 033836 33 LKSAFVMLGVCLAVMFG----LAFSSSDSSLILHVGFLLLIALTLFFLLS-WF--LAQTGLVSVEHQMLEMNLM 99 (110)
Q Consensus 33 Lki~fllL~lcla~ML~----lAf~ssd~~l~~HV~~Lv~i~~tLF~LLn-wf--La~tglv~vE~Qm~Em~l~ 99 (110)
+|..|+.+|..+..... --+.++|..++-....=.++++..|+++. || ..++.+=-.|+|.+.+..+
T Consensus 6 i~l~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~~ 79 (356)
T COG4956 6 IILLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPVT 79 (356)
T ss_pred HHHHHHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 56777777776655443 22334455555555555666666666666 77 5667777788888877654
No 13
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=44.80 E-value=44 Score=21.16 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 033836 62 HVGFLLLIALTLFFLLSWFLAQTGLV 87 (110)
Q Consensus 62 HV~~Lv~i~~tLF~LLnwfLa~tglv 87 (110)
=......+|..++.+++|+++.+|+-
T Consensus 12 ~ll~~~~~A~~l~~~l~~ll~r~~~~ 37 (58)
T PF07869_consen 12 PLLVYALLALLLTLLLRRLLARLGLY 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34566778889999999999999863
No 14
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=42.92 E-value=14 Score=24.04 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=24.4
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccc
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQ 104 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~ 104 (110)
-||-||+.+-..|-+.+.++|+.++...
T Consensus 48 ~N~~LS~~RA~~V~~~L~~~gi~~~ri~ 75 (104)
T TIGR02802 48 YNLALGERRANAVKDYLQAKGVSASQIE 75 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHeE
Confidence 3899999999999999999999875543
No 15
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=42.22 E-value=1.5e+02 Score=22.37 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHH---HHHHHcC
Q 033836 64 GFLLLIALTLFFLLSWFLAQTGLVSVE---HQMLEMN 97 (110)
Q Consensus 64 ~~Lv~i~~tLF~LLnwfLa~tglv~vE---~Qm~Em~ 97 (110)
.+..++.+++++++.|++...-.-|.+ ++++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~ 100 (356)
T PRK10755 64 LVPSLVMVSLTLLICFQAVRWITRPLAELQKELEART 100 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 334444555555566665554444443 4455543
No 16
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=40.78 E-value=1.9e+02 Score=23.57 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSS 54 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~s 54 (110)
..+.|..++.++....+...+.++++|..
T Consensus 55 r~~~~~el~ri~~a~~l~~l~~~~~~~~~ 83 (445)
T TIGR03025 55 GRSFLEELARVLLAWLLVFLLLLALAFLL 83 (445)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555555555555544
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=40.30 E-value=61 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033836 34 KSAFVMLGVCLAVMFGLAF 52 (110)
Q Consensus 34 ki~fllL~lcla~ML~lAf 52 (110)
|+.++++.+|+++.++..+
T Consensus 3 r~l~~~~~l~~~~~~~~~~ 21 (398)
T PRK10747 3 KVLLLFVLLIAGIVVGPMI 21 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454555555555544444
No 18
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.55 E-value=52 Score=24.29 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=24.2
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 033836 21 LAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFS 53 (110)
Q Consensus 21 La~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ 53 (110)
|-.=+..--|.++|..+-+...|+|++||+-..
T Consensus 143 lr~~iE~~K~~~lr~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 143 LRTEIESLKWDTLRWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567999999887888888888887543
No 19
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=39.07 E-value=1.1e+02 Score=19.85 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH
Q 033836 36 AFVMLGVCLAVMFGLAFSSS-DSSLILHVGFLLLIALTLFFLLSWFLAQTGLVSVEHQ 92 (110)
Q Consensus 36 ~fllL~lcla~ML~lAf~ss-d~~l~~HV~~Lv~i~~tLF~LLnwfLa~tglv~vE~Q 92 (110)
-|.+..+|.++.+....... .................+..++|+|.-+-......+|
T Consensus 41 y~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~P~~~~l~~~ 98 (101)
T PF13664_consen 41 YFYLGLACAAVLLLTSLALHKGSGNANRWQLLLLLVMLLLTLLNAFYLGPKMNALKDQ 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555444332 2222223444445555566677877655444444443
No 20
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=37.70 E-value=1.4e+02 Score=20.80 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 25 VNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLA 82 (110)
Q Consensus 25 VN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa 82 (110)
+|-|.|-.-=..-++-+++ .++..-....+-......+..+ +.+...+.+..+++.
T Consensus 10 ~NDPD~~lWv~iY~i~a~~-~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~ 65 (104)
T PF15071_consen 10 INDPDPELWVPIYGIAAVL-CVLANFGVTPNWIWKIAAALHL-ACSLWPFFLAGGVFE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHH-HHHHhhccchHHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence 6889886554444443333 2222222222223334444444 566666666666543
No 21
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=37.55 E-value=1.2e+02 Score=20.53 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 033836 58 SLILHVGFLLLIALTLFFL--LSWFLAQ 83 (110)
Q Consensus 58 ~l~~HV~~Lv~i~~tLF~L--LnwfLa~ 83 (110)
.+..++..++.++++||++ +++|+++
T Consensus 31 F~~n~~~g~i~i~I~l~l~G~isE~i~~ 58 (63)
T PF06341_consen 31 FLINQIAGLISIGITLFLAGLISEFISK 58 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888999998888874 6677766
No 22
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.47 E-value=1.8e+02 Score=23.94 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=16.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSSS 55 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~ss 55 (110)
|..||.+|=.-.-....|+.++..+--...
T Consensus 91 d~~~q~vLg~Figtfvy~l~~l~~i~~~~~ 120 (371)
T PF10011_consen 91 DRVTQVVLGTFIGTFVYSLLVLIAIRSGDY 120 (371)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 566777776554444555555555544443
No 23
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.87 E-value=52 Score=21.68 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=9.1
Q ss_pred cHHHHHHHcCCCCCcc
Q 033836 88 SVEHQMLEMNLMPNDH 103 (110)
Q Consensus 88 ~vE~Qm~Em~l~~~~~ 103 (110)
.+.+-|+|-|..++|.
T Consensus 39 ~i~~yL~e~gy~e~~I 54 (85)
T PF11337_consen 39 AIDWYLQEQGYKESDI 54 (85)
T ss_pred HHHHHHHHcCCcHHHh
Confidence 4555666666664443
No 24
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=35.31 E-value=47 Score=26.45 Aligned_cols=23 Identities=48% Similarity=0.594 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033836 60 ILHVGFLLLIALTLFFLLSWFLA 82 (110)
Q Consensus 60 ~~HV~~Lv~i~~tLF~LLnwfLa 82 (110)
..||++++++|+.+|.|+--+-.
T Consensus 192 ~~~VF~lll~ai~lF~l~P~~r~ 214 (282)
T PF06432_consen 192 TLHVFALLLFAIQLFALFPIFRR 214 (282)
T ss_pred chHHHHHHHHHHHHHHHhHHHHH
Confidence 36899999999999988775543
No 25
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=35.27 E-value=30 Score=21.72 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 78 SWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 78 nwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
||-||+-+--.|-+.+.+.|+.+........|
T Consensus 48 n~~LS~~RA~~V~~~L~~~gi~~~ri~~~~~G 79 (97)
T PF00691_consen 48 NQELSQRRAEAVKQYLVENGIPPERISVVGYG 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSGGGEEEEEET
T ss_pred HhHHHHHHHHHHHHHHHHcCCChHhEEEEEEc
Confidence 88899999999999999999998766554444
No 26
>PRK11594 efflux system membrane protein; Provisional
Probab=35.25 E-value=69 Score=21.72 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 033836 62 HVGFLLLIALTLFFLLSWFLAQTGL 86 (110)
Q Consensus 62 HV~~Lv~i~~tLF~LLnwfLa~tgl 86 (110)
=......+|..++.++.|.++.+|+
T Consensus 16 ~llv~~l~A~~l~~~lr~lL~r~g~ 40 (67)
T PRK11594 16 PIFFELLLSLALFWLVRRVLVPTGI 40 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3456677899999999999999986
No 27
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=34.06 E-value=11 Score=28.10 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=13.6
Q ss_pred HHHhh-cCCCCCChhHHHHH
Q 033836 16 VFLGA-LAPGVNGPTWTTLK 34 (110)
Q Consensus 16 VllGA-La~GVN~PTW~~Lk 34 (110)
+|+|| +|...+-|+|..|-
T Consensus 5 lFiGAG~S~~~glP~W~~Ll 24 (242)
T cd01406 5 IFVGAGVSVSSGLPDWKTLL 24 (242)
T ss_pred EEecCccccccCCCChHHHH
Confidence 56776 44457899999874
No 28
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=33.73 E-value=1.2e+02 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=26.7
Q ss_pred cchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHH
Q 033836 10 VSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLA 45 (110)
Q Consensus 10 isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla 45 (110)
|++-..-+-|-||.==-.=-|.++|..+..++..+|
T Consensus 92 I~~iKt~LMGPlAGIGDslf~~tl~pI~~~i~~~la 127 (264)
T PF03613_consen 92 INSIKTALMGPLAGIGDSLFWGTLRPILASIAASLA 127 (264)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 666677788888765556679999998877776555
No 29
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=32.90 E-value=77 Score=26.93 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033836 51 AFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTG 85 (110)
Q Consensus 51 Af~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tg 85 (110)
++-+|-..--.||++++++|+.+|.++--|...++
T Consensus 185 v~LaSRl~~~~~vF~fllfai~~~al~p~~~~~i~ 219 (292)
T KOG3059|consen 185 VLLASRLEKSIHVFNFLLFAIQLFALLPNFRKRIK 219 (292)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555556788888888888877765555555
No 30
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=32.77 E-value=57 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 033836 35 SAFVMLGVCLAVMFGLAFSS 54 (110)
Q Consensus 35 i~fllL~lcla~ML~lAf~s 54 (110)
|+|+.|++|+--.|++||--
T Consensus 22 itFl~la~~l~PilsV~~VG 41 (62)
T COG4459 22 ITFLFLAFGLFPILSVAFVG 41 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999998853
No 31
>PHA03164 hypothetical protein; Provisional
Probab=32.69 E-value=95 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.654 Sum_probs=22.6
Q ss_pred HHhhcCCC-CCChhHHHHHH-----HHHH-HHHHHHHHHHHHH
Q 033836 17 FLGALAPG-VNGPTWTTLKS-----AFVM-LGVCLAVMFGLAF 52 (110)
Q Consensus 17 llGALa~G-VN~PTW~~Lki-----~fll-L~lcla~ML~lAf 52 (110)
||-.|.|- .|+|.|+-.+. +|+. -|+..++.|.++|
T Consensus 34 fveclpPpqisrtawnlwnnrRktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 34 FVECLPPPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred cceecCCcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHHH
Confidence 44556654 49998887654 4544 4566666666665
No 32
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=32.27 E-value=3.1e+02 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.9
Q ss_pred CCCChhHHHHHHHHHH
Q 033836 24 GVNGPTWTTLKSAFVM 39 (110)
Q Consensus 24 GVN~PTW~~Lki~fll 39 (110)
+.+.|-|..+|..+-.
T Consensus 78 ~~~~~~~~e~k~~~~~ 93 (476)
T PRK15204 78 TYRKPFWYELKEIFRT 93 (476)
T ss_pred eecCchHHHHHHHHHH
Confidence 4567889999766543
No 33
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.68 E-value=3.5e+02 Score=27.28 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCccHHHHHHHcCCC
Q 033836 27 GPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFL-----AQTGLVSVEHQMLEMNLM 99 (110)
Q Consensus 27 ~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfL-----a~tglv~vE~Qm~Em~l~ 99 (110)
+-.|..+|.=++.-.+.+++.+....+.+...-..-|++.++-|..+=-+++|+. .|+..++||.=.+=+.+.
T Consensus 1040 a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~ 1117 (1381)
T KOG0054|consen 1040 ANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIP 1117 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCC
Confidence 3469999998885555555544444444432225778999999999999999994 467899999866656654
No 34
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=31.54 E-value=1.7e+02 Score=19.91 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchH--------HHHHHHHHHH-HHHHHHHHHHHHHHhcCccHHHHHHHcCCCCCc
Q 033836 33 LKSAFVMLGVCLAVMFGLAFSSSDSSL--------ILHVGFLLLI-ALTLFFLLSWFLAQTGLVSVEHQMLEMNLMPND 102 (110)
Q Consensus 33 Lki~fllL~lcla~ML~lAf~ssd~~l--------~~HV~~Lv~i-~~tLF~LLnwfLa~tglv~vE~Qm~Em~l~~~~ 102 (110)
-|+++.+..+.++...+.|+..++... ..+-+++-.| +-++|.++-|++-. -=.|+|.+++++
T Consensus 7 A~~tl~l~l~yf~~W~~~ay~~~~~~~~~y~~i~GlPlWF~~SCi~~~il~~~l~~~~vk-------~~Fkd~~Ld~~~ 78 (80)
T PF06196_consen 7 ARWTLGLTLIYFAWWYGFAYGLGNGDGEEYKYIFGLPLWFFYSCIGGPILFIILVWLMVK-------FFFKDIPLDDEE 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccccccccCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHhhcCCCCccc
Confidence 367778888889999999988776555 2344444433 44555555555432 224556665443
No 35
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=31.43 E-value=36 Score=27.36 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred HHHHHhcCcc--HHHHHHHcCCCCCccc
Q 033836 79 WFLAQTGLVS--VEHQMLEMNLMPNDHQ 104 (110)
Q Consensus 79 wfLa~tglv~--vE~Qm~Em~l~~~~~~ 104 (110)
-|+-.-|+=| +|.|||-||+.++...
T Consensus 66 k~mERYGfd~~~iE~q~K~~Gid~~~~~ 93 (186)
T PF12983_consen 66 KFMERYGFDPSEIEKQMKSMGIDMSSLN 93 (186)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCCccccc
Confidence 4566667665 7999999999987665
No 36
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=30.83 E-value=1e+02 Score=27.19 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=4.9
Q ss_pred HHHHHhcCc
Q 033836 79 WFLAQTGLV 87 (110)
Q Consensus 79 wfLa~tglv 87 (110)
+|...-|.+
T Consensus 90 Yf~~~ygv~ 98 (545)
T PRK11598 90 YFMMTYGIV 98 (545)
T ss_pred HHHHhcCCc
Confidence 455555654
No 37
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=30.67 E-value=2.7e+02 Score=21.87 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHHHHHHHHHHH--HHHhcCccHH
Q 033836 34 KSAFVMLGVCLAVMFGLAFSSS--D-SSLILHVGFLLLIALTLFFLLSWF--LAQTGLVSVE 90 (110)
Q Consensus 34 ki~fllL~lcla~ML~lAf~ss--d-~~l~~HV~~Lv~i~~tLF~LLnwf--La~tglv~vE 90 (110)
|+++=+.+++++ +++++|... - ...-.-+..-+.++...|++.+.+ +++.|.+|..
T Consensus 274 r~a~Pl~~~~~~-lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~ 334 (356)
T PRK15071 274 KIFQPLSVAVMM-LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPI 334 (356)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 566555555544 556666332 1 223334444444455544554444 8888888864
No 38
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=29.75 E-value=2.6e+02 Score=25.62 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHhcCccHHHHHHH
Q 033836 24 GVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWF-LAQTGLVSVEHQMLE 95 (110)
Q Consensus 24 GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwf-La~tglv~vE~Qm~E 95 (110)
|+.||-|- .|.|..|-+..-.|++ .........--.++++++..|.+++|+ -.=...-|++|++.+
T Consensus 99 ga~G~Rya--~Iaf~tLliaiytmlg----~~~~~~w~~~pllll~GalwY~llsl~~~~l~p~rp~q~~LA~ 165 (704)
T TIGR01666 99 GAVGQRYA--TIAFGSLLVALYTMLG----YIEVNVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQENLAK 165 (704)
T ss_pred HHhhhhHH--HHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
No 39
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=29.61 E-value=3.8e+02 Score=24.44 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=36.4
Q ss_pred CcchhHHHHHhhcCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 033836 9 DVSSAEAVFLGALAPGVNG---PTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHV 63 (110)
Q Consensus 9 ~isSaeAVllGALa~GVN~---PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV 63 (110)
+...+=.+.+|+++.|..- |-...+|..++.+.+.+.+.+...+.....++..=+
T Consensus 30 ~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~ 87 (701)
T TIGR01667 30 LLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFL 87 (701)
T ss_pred CccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4456667889999988764 445557777777766666667777666555554433
No 40
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=29.01 E-value=1.1e+02 Score=22.40 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-H-HhcCccHHHH------HHHcCCCCC
Q 033836 63 VGFLLLIALTLFFLLSWFL-A-QTGLVSVEHQ------MLEMNLMPN 101 (110)
Q Consensus 63 V~~Lv~i~~tLF~LLnwfL-a-~tglv~vE~Q------m~Em~l~~~ 101 (110)
|++.+.|++++|.+.+-|. . .--.++-|.| |++|+..|.
T Consensus 81 ~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPi 127 (136)
T cd00922 81 VLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPI 127 (136)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCC
Confidence 4444566777777776654 0 1122455766 889998874
No 41
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=28.84 E-value=3.5e+02 Score=22.66 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=25.9
Q ss_pred chhHHHHHhhcCCCC-CChh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 033836 11 SSAEAVFLGALAPGV-NGPT-----WTTLKSAFVMLGVCLAVMFGLAFSSSDS 57 (110)
Q Consensus 11 sSaeAVllGALa~GV-N~PT-----W~~Lki~fllL~lcla~ML~lAf~ssd~ 57 (110)
+-+-|+.+.+|+.|- +.-. |..+++.+++=.+|-..+...++.+.+.
T Consensus 331 ~qs~~~~~r~l~~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~ 383 (449)
T TIGR00400 331 SQSSAVVIRGLALETVKVKDFFKVILREICVSILVGAILASVNFLRIVFFQGK 383 (449)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 446789999999886 3333 3344454444333333444455555333
No 42
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=28.03 E-value=94 Score=27.51 Aligned_cols=43 Identities=12% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---------HHHHHhcCc----cHHHHHHHcC-CCCCccccccC
Q 033836 66 LLLIALTLFFLLS---------WFLAQTGLV----SVEHQMLEMN-LMPNDHQRSNK 108 (110)
Q Consensus 66 Lv~i~~tLF~LLn---------wfLa~tglv----~vE~Qm~Em~-l~~~~~~~~~k 108 (110)
||+.-+..+++.+ |+|..+|+. |.|||.|++. -+++.|++|+|
T Consensus 7 lv~tli~asvi~kl~p~~sfarwll~~g~L~ryl~Psd~eL~~lagk~~~~k~~k~r 63 (486)
T PF10268_consen 7 LVVTLIMASVIQKLIPHFSFARWLLCNGGLTRYLHPSDEELRALAGKQKKPKGKKDR 63 (486)
T ss_pred hHHHHHHHHHHHHhhccCCHHHHHHhccceEEeCCCCHHHHHHHcCCCCCCCCcCCC
No 43
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=27.82 E-value=1.5e+02 Score=24.21 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=38.5
Q ss_pred cchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033836 10 VSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTGL 86 (110)
Q Consensus 10 isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tgl 86 (110)
|++-..=+-|-||.==-.=-|.++|-.+..++..+|. +++. +.=+++++...+..| ++.|++-..|.
T Consensus 94 I~~iKt~LMGPlAGIGDSlf~gt~~pI~~~Ia~~lA~--------~Gn~-lGpil~~v~~~~~~~-~~~~~~~~~GY 160 (271)
T TIGR00828 94 INGIKVGLMGPIAGVGDPIFWGTLRPIMAALGASLAL--------SGNL-LGPLLFFFLFNLVRL-ATRYYGLHYGY 160 (271)
T ss_pred HHHHHHHHccchhhhhhHHHHHHHHHHHHHHHHHHHh--------ccCh-HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3344444888887544445689999888777665543 3333 333444444444444 57777665554
No 44
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=27.81 E-value=1.1e+02 Score=26.15 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHc
Q 033836 32 TLKSAFVMLGVCLAVMFGLAFSSSDSSL------ILHVGFLLLIALTLFFLLSWFLAQTGL-VSVEHQMLEM 96 (110)
Q Consensus 32 ~Lki~fllL~lcla~ML~lAf~ssd~~l------~~HV~~Lv~i~~tLF~LLnwfLa~tgl-v~vE~Qm~Em 96 (110)
.-|.+--..|..+++.+.+++...|..+ --||++.+++..+++-...-++.+... -..|+-|++.
T Consensus 207 iar~v~Fv~Gs~~aVl~~lsl~d~~~l~~~ei~~~~~vl~~itv~g~i~av~r~~ip~e~~v~~Pe~~l~~v 278 (370)
T PF04109_consen 207 IARFVSFVAGSFAAVLILLSLLDEDLLLSFEITPGRTVLWYITVFGTIWAVCRSMIPDENEVFDPEELLREV 278 (370)
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCHHHhheeeecCCccHHHHHHHHHHHHHHhcccCCccccccCHHHHHHHH
Confidence 3455455556666666666666555444 459999999999999888877665555 5566667654
No 45
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=27.74 E-value=2.1e+02 Score=19.75 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=7.6
Q ss_pred HHHHHHhcCCchHHHHH
Q 033836 47 MFGLAFSSSDSSLILHV 63 (110)
Q Consensus 47 ML~lAf~ssd~~l~~HV 63 (110)
++.++.+.+....+.|.
T Consensus 43 ~l~~~ifP~~~~~vA~~ 59 (115)
T PF10066_consen 43 LLILSIFPNILDWVAKL 59 (115)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 33444444444444443
No 46
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.
Probab=27.59 E-value=37 Score=23.32 Aligned_cols=12 Identities=67% Similarity=0.980 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 033836 67 LLIALTLFFLLS 78 (110)
Q Consensus 67 v~i~~tLF~LLn 78 (110)
+.|+.+||++|+
T Consensus 7 v~i~vvLFvlLs 18 (68)
T PF11820_consen 7 VLIAVVLFVLLS 18 (68)
T ss_pred HHHHHHHHHHhC
Confidence 578999999986
No 47
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=26.92 E-value=1.6e+02 Score=18.25 Aligned_cols=45 Identities=31% Similarity=0.429 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHHH
Q 033836 33 LKSAFVMLGVCLAVMFGLAFSSSDS---SLILHVGFLLLIALTLFFLL 77 (110)
Q Consensus 33 Lki~fllL~lcla~ML~lAf~ssd~---~l~~HV~~Lv~i~~tLF~LL 77 (110)
+|..+.++++.++.+-.......++ ....|++-.+.+++.++.++
T Consensus 14 ~Rt~l~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (73)
T PF02656_consen 14 IRTALALVGVGLALLRFFSLDHPSSSASRRVSKVLGLLLIVLGLLTLI 61 (73)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666544433322221 45556665555555555444
No 48
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.71 E-value=26 Score=28.72 Aligned_cols=28 Identities=32% Similarity=0.648 Sum_probs=20.0
Q ss_pred CCCCcchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 033836 6 GKADVSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAV 46 (110)
Q Consensus 6 ~~~~isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ 46 (110)
.+++-+|---||||+ | +++|+|++||.+
T Consensus 53 ~ksKt~SVAyVLVG~---G----------v~LLLLSICL~I 80 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGS---G----------VALLLLSICLSI 80 (233)
T ss_pred ccceeEEEEEehhhH---H----------HHHHHHHHHHHH
Confidence 445556666788887 5 478888888753
No 49
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=26.70 E-value=78 Score=20.55 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHhcCccHHHHHHHcCCCCCcc
Q 033836 79 WFLAQTGLVSVEHQMLEMNLMPNDH 103 (110)
Q Consensus 79 wfLa~tglv~vE~Qm~Em~l~~~~~ 103 (110)
+|.....-.-+|++++++|+.+-|.
T Consensus 35 ~f~~~L~~~Gv~~~L~~~G~~~GD~ 59 (69)
T TIGR03595 35 RFARKLKKLGVEDALRKAGAKDGDT 59 (69)
T ss_pred HHHHHHHHCCHHHHHHHcCCCCCCE
Confidence 4434444444899999999987653
No 50
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=26.52 E-value=2.6e+02 Score=22.41 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHcCCCC
Q 033836 68 LIALTLFFLLSWFLAQTGLVSVEHQMLEMNLMP 100 (110)
Q Consensus 68 ~i~~tLF~LLnwfLa~tglv~vE~Qm~Em~l~~ 100 (110)
-++++||+++=|+ .----+|..++...-|+++
T Consensus 168 pl~~vlFl~fPR~-~plw~~~~~~~~a~TG~Sd 199 (325)
T PF11992_consen 168 PLALVLFLLFPRL-GPLWSMPQSSQQATTGFSD 199 (325)
T ss_pred HHHHHHHHHhhcc-hhhcCCCCCCCCCCCCCCC
Confidence 4566778888887 4323355455556667665
No 51
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=25.97 E-value=1.8e+02 Score=24.07 Aligned_cols=53 Identities=26% Similarity=0.192 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH-----------HHHHHHHHHHHHHHH
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHV-----------GFLLLIALTLFFLLS 78 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV-----------~~Lv~i~~tLF~LLn 78 (110)
=.-+|++|.+......+...+-.-+||...-...-.-- .=-|+++..||+|++
T Consensus 22 ~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlS 85 (227)
T COG4662 22 IGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLS 85 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCchHHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 34578999888777766665555555433211110000 012578889999998
No 52
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.90 E-value=1.5e+02 Score=26.58 Aligned_cols=36 Identities=28% Similarity=0.654 Sum_probs=26.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 033836 22 APGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLL 77 (110)
Q Consensus 22 a~GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LL 77 (110)
+.|=..--|.-||+.|+..++ +=|||.++.+||+.-
T Consensus 14 ~G~~~kgC~YYlryfFlF~SL--------------------IQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 14 AGGKGKGCWYYLRYFFLFVSL--------------------IQFLIILGLVLFMVY 49 (442)
T ss_pred cCCCCCChhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhh
Confidence 445666789999999975443 247888899999865
No 53
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=25.79 E-value=28 Score=22.75 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCC
Q 033836 89 VEHQMLEMNLMP 100 (110)
Q Consensus 89 vE~Qm~Em~l~~ 100 (110)
.-.||||+||++
T Consensus 30 ~s~~LK~~GIp~ 41 (57)
T PF09597_consen 30 SSKQLKELGIPV 41 (57)
T ss_pred CHHHHHHCCCCH
Confidence 346999999954
No 54
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.44 E-value=3.2e+02 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CccHHHHHH
Q 033836 60 ILHVGFLLLIALTLFFLLSWFLAQTG-LVSVEHQML 94 (110)
Q Consensus 60 ~~HV~~Lv~i~~tLF~LLnwfLa~tg-lv~vE~Qm~ 94 (110)
..+-..++++|...|.+++|+..-.- .-|++|++.
T Consensus 71 ~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa 106 (284)
T PF12805_consen 71 ALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALA 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44455778889999999986644332 334455443
No 55
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.33 E-value=48 Score=16.70 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.4
Q ss_pred HHHHHcCCCC
Q 033836 91 HQMLEMNLMP 100 (110)
Q Consensus 91 ~Qm~Em~l~~ 100 (110)
++|++-|+.|
T Consensus 25 ~~M~~~gv~P 34 (34)
T PF13812_consen 25 DEMKEQGVKP 34 (34)
T ss_pred HHHHHhCCCC
Confidence 5677767654
No 56
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=25.18 E-value=5e+02 Score=24.87 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Q 033836 30 WTTLKSAFVMLGVCL-AVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTGLVSVEHQML 94 (110)
Q Consensus 30 W~~Lki~fllL~lcl-a~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tglv~vE~Qm~ 94 (110)
|-.|--.+.++++++ +.|+++ |..- ....|.+.++++++..++ .-|.+.....=+.++-.+
T Consensus 18 WP~l~~~l~v~~lfla~~~~Gl-~~~l--p~~~~~~~l~~~~~~~~~-~l~~~~rfr~P~~~ea~~ 79 (851)
T TIGR02302 18 WPHLLRVMSLVGLFLSLGWAGL-FLAL--PFWLHIAGLVLFAALALV-ALIPAIRFRWPSRDEALA 79 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-HHhh--HHHHHHHHHHHHHHHHHH-HHhhhhhcCCCCHHHHHH
Confidence 444433334444433 334444 3333 345587777775544433 335555555555554444
No 57
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=25.17 E-value=1.3e+02 Score=25.08 Aligned_cols=34 Identities=35% Similarity=0.762 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHH-------hcCcc-----HHHHHHHcCCCC
Q 033836 67 LLIALTLFFLLSWFLAQ-------TGLVS-----VEHQMLEMNLMP 100 (110)
Q Consensus 67 v~i~~tLF~LLnwfLa~-------tglv~-----vE~Qm~Em~l~~ 100 (110)
+++++.+|+++-++||. +|--+ +-++++|+|+.|
T Consensus 87 ~~~G~~~f~~ll~~lS~fIW~IeI~Gn~~~t~~~i~~~L~e~Gi~~ 132 (382)
T TIGR02876 87 ILIGILLFLAIVYFLSNFIWKIDITGVKGETPYEIRKQLKEMGIKP 132 (382)
T ss_pred HHHHHHHHHHHHHHHhheEEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 34555666665555554 44433 246789999986
No 58
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=25.04 E-value=24 Score=23.50 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 033836 25 VNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDS 57 (110)
Q Consensus 25 VN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~ 57 (110)
.+.+.|..++..+....+.++++.++.|...+.
T Consensus 10 ~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~ 42 (175)
T PF13727_consen 10 RRRSFLRELRRILIAWLIAFLLLVLILFFLKDA 42 (175)
T ss_dssp ---------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344555555555444444444555555555443
No 59
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=24.88 E-value=1.3e+02 Score=22.44 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 033836 28 PTWTTLKSAFVMLGVCLAVMFGLAFSSSDS 57 (110)
Q Consensus 28 PTW~~Lki~fllL~lcla~ML~lAf~ssd~ 57 (110)
|.|.++-|..++|...+..+++..+..++-
T Consensus 3 ~EWvt~~Is~~ill~viglv~y~~l~~~~~ 32 (122)
T TIGR02588 3 AEWVTFGISTLILAAMFGLVAYDWLRYSNK 32 (122)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 667777777666666666666666665553
No 60
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=24.80 E-value=27 Score=19.16 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=10.2
Q ss_pred HHHHHcCCCCCcc
Q 033836 91 HQMLEMNLMPNDH 103 (110)
Q Consensus 91 ~Qm~Em~l~~~~~ 103 (110)
+|+.+||.++++.
T Consensus 6 ~~L~~mGf~~~~a 18 (37)
T smart00165 6 DQLLEMGFSREEA 18 (37)
T ss_pred HHHHHcCCCHHHH
Confidence 5899999987543
No 61
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=24.27 E-value=3.6e+02 Score=21.26 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 32 TLKSAFVMLGVCLAVMFGLAFSSS-DSSLILHVGFLLLIALTLFFLLSWFL 81 (110)
Q Consensus 32 ~Lki~fllL~lcla~ML~lAf~ss-d~~l~~HV~~Lv~i~~tLF~LLnwfL 81 (110)
..=.+|..-++.+.+|-..|++.. |+....=.++-.+++..++-+.|.|+
T Consensus 105 iV~~A~~~Ta~iF~~ls~~a~~tk~Dfs~lg~~L~~~l~~li~~~l~~~F~ 155 (219)
T PRK10447 105 VIALALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFL 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777776655 77777777666677777777777775
No 62
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.15 E-value=1.1e+02 Score=25.12 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.0
Q ss_pred CCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCc
Q 033836 24 GVNGPTWTT-LKSAFVMLGVCLAVMFGLAFSSSDS 57 (110)
Q Consensus 24 GVN~PTW~~-Lki~fllL~lcla~ML~lAf~ssd~ 57 (110)
+-|-|.|.. -|++|.+|...+-+-++-+|-+|+-
T Consensus 13 l~Ni~eWpl~~rlv~~lL~~~~V~~lGy~f~~s~k 47 (211)
T COG3167 13 LLNIGEWPLAPRLVFCLLAVAAVLGLGYAFYLSGK 47 (211)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 568888975 5888888888888888888877764
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.01 E-value=1.8e+02 Score=23.38 Aligned_cols=14 Identities=14% Similarity=0.244 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 033836 35 SAFVMLGVCLAVMF 48 (110)
Q Consensus 35 i~fllL~lcla~ML 48 (110)
+.++++.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~ 17 (409)
T TIGR00540 4 VLFLFLLLIAGIVA 17 (409)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 64
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.99 E-value=3e+02 Score=20.27 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 033836 25 VNGPTWTTLKSAFVMLGVCLAVMFGLA 51 (110)
Q Consensus 25 VN~PTW~~Lki~fllL~lcla~ML~lA 51 (110)
|.-|+=+.+|.+|+.-.+=|..|+.-|
T Consensus 67 v~i~e~~llkaa~lvYllPLl~li~ga 93 (154)
T PRK10862 67 LGIAEGSLLRSALLVYMTPLVGLFLGA 93 (154)
T ss_pred EecchhhHHHHHHHHHHHHHHHHHHHH
Confidence 346888999999998777777776433
No 65
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=23.85 E-value=4e+02 Score=21.72 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=45.7
Q ss_pred HHHHhhcCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Q 033836 15 AVFLGALAPGVNGPTWTTLKSAF-VMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQTGLVSVEHQM 93 (110)
Q Consensus 15 AVllGALa~GVN~PTW~~Lki~f-llL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~tglv~vE~Qm 93 (110)
.+|+++.+.+. |.+.. .- ..+|+..++-++.++..+..-+-.|.+|.++-...+++ ---++++- -|++
T Consensus 138 VlF~~g~~~~~--~~~~~---~gg~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~ll-Aagl~~~g-----v~~l 206 (283)
T TIGR00145 138 VLFLAGFQQGS--HATAY---IGPAVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLFI-AAGLLGGG-----NHRF 206 (283)
T ss_pred HHhHHHHhcCC--CchhH---HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-HHHHHHHH-----HHHH
Confidence 34667755443 44422 22 56788888889999988888888898888764444433 33333321 3555
Q ss_pred HHcCCCC
Q 033836 94 LEMNLMP 100 (110)
Q Consensus 94 ~Em~l~~ 100 (110)
+|.|.-|
T Consensus 207 q~ag~l~ 213 (283)
T TIGR00145 207 NLAGGGD 213 (283)
T ss_pred HHccCCC
Confidence 6666433
No 66
>PF13041 PPR_2: PPR repeat family
Probab=23.41 E-value=42 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHcCCCCCccc
Q 033836 90 EHQMLEMNLMPNDHQ 104 (110)
Q Consensus 90 E~Qm~Em~l~~~~~~ 104 (110)
=+||++-|+.|+..+
T Consensus 26 ~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 26 FKEMKKRGIKPDSYT 40 (50)
T ss_pred HHHHHHcCCCCCHHH
Confidence 368999999987643
No 67
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.19 E-value=1.7e+02 Score=22.38 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033836 24 GVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSS 55 (110)
Q Consensus 24 GVN~PTW~~Lki~fllL~lcla~ML~lAf~ss 55 (110)
.+..|+|.++=..++..++.+.-.-|=.+|+|
T Consensus 91 ~~dvP~~~~~~~S~~~Fg~gllGisYGilSaS 122 (153)
T PF11947_consen 91 IVDVPPWAVLLVSLVFFGLGLLGISYGILSAS 122 (153)
T ss_pred ccccCchHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 47889999888888877777665555555554
No 68
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.90 E-value=1.6e+02 Score=21.15 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 033836 30 WTTLKSAFVMLGVCLAV--MFGLAFSSSDSSLILHVGFLLLIALTLFF 75 (110)
Q Consensus 30 W~~Lki~fllL~lcla~--ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~ 75 (110)
|.+.=.++.|+.+.... +=.+.+..-...-..|...++.+++.+|+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fI 88 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHh
Confidence 88777766666544332 22222222212445667777777777664
No 69
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=22.69 E-value=3.1e+02 Score=20.04 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 35 SAFVMLGVCLAVMFGLAFSS-SDSSLILHVGFLLLIALTLFFLLSWFL 81 (110)
Q Consensus 35 i~fllL~lcla~ML~lAf~s-sd~~l~~HV~~Lv~i~~tLF~LLnwfL 81 (110)
.++..-+.++.++-..|+.. .|.....=+++..+++..++-++|.|+
T Consensus 99 ~A~~~T~~if~~l~l~a~~tk~d~~~~g~~l~~~~~~l~~~~l~~~f~ 146 (212)
T cd06181 99 QAFGITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLVNIFL 146 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444334333 455555555555555555566666553
No 70
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=22.64 E-value=4.3e+02 Score=21.55 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccHHHHHH
Q 033836 37 FVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQT-----GLVSVEHQML 94 (110)
Q Consensus 37 fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~t-----glv~vE~Qm~ 94 (110)
.++...|.+...+.++..+. ..-.+..+.+.+.++..+++--.+. ..+..||+.+
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~W~~~I~~E~~r~ 226 (386)
T PF05975_consen 167 RLLRLILNALILYLLLWLSP---WLLLILALLLLILLFFYLRRLKKKKRLDWERLIEEEQKRR 226 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 33444455555555554433 2233334444455555555543332 2356666654
No 71
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.41 E-value=1.7e+02 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 033836 56 DSSLILHVGFLLLIALTLFFLLSWF 80 (110)
Q Consensus 56 d~~l~~HV~~Lv~i~~tLF~LLnwf 80 (110)
+.....|=..+++|++..=++.|++
T Consensus 116 ~~~~~~~r~l~t~iG~~va~lVN~~ 140 (141)
T PF06081_consen 116 SFSYALNRVLLTLIGIGVALLVNLL 140 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444667777888888887788776
No 72
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=22.33 E-value=1e+02 Score=26.75 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCCcchhHHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033836 7 KADVSSAEAVFLGALAPGVNGPTWTTLKSAFVMLGVCLAVMFGLAFSS 54 (110)
Q Consensus 7 ~~~isSaeAVllGALa~GVN~PTW~~Lki~fllL~lcla~ML~lAf~s 54 (110)
.+.||+|.+-++|-+++. -.|+-+++..+.+-.+|..++.-||.+
T Consensus 140 aSPiSAA~~~~~~~l~~~---~gv~~~~iL~V~iPat~ig~~~~a~~~ 184 (364)
T PF03605_consen 140 ASPISAATVAMIAILAPA---HGVSLLQILAVTIPATLIGVLVAAFVS 184 (364)
T ss_pred cCcHHHHHHHHHHHHccc---cCCCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357899999999999992 445666777777777777777766654
No 73
>COG4325 Predicted membrane protein [Function unknown]
Probab=22.12 E-value=39 Score=30.38 Aligned_cols=19 Identities=42% Similarity=0.791 Sum_probs=14.7
Q ss_pred HhhcCCCCCChhHHHHHHHH
Q 033836 18 LGALAPGVNGPTWTTLKSAF 37 (110)
Q Consensus 18 lGALa~GVN~PTW~~Lki~f 37 (110)
+=||+||||-| .|+.+++=
T Consensus 320 ~RALSPavNDP-~TAiqcv~ 338 (464)
T COG4325 320 LRALSPAVNDP-YTAIQCVH 338 (464)
T ss_pred HHhcCCccCCc-HHHHHHHH
Confidence 56999999999 46666654
No 74
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=22.07 E-value=1.4e+02 Score=23.13 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 033836 25 VNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSS 58 (110)
Q Consensus 25 VN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~ 58 (110)
-|+|.|-+==.=|+.|-+||-+||+ ++++.|-.
T Consensus 13 ~~~~~WlvtyaDl~TLLL~FFVlL~-smS~~d~~ 45 (252)
T PRK06667 13 QGAPEYMLTYGDMVTLLLCFFVMLF-TTNDVDEN 45 (252)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHH-HhhhcCHH
Confidence 4779998877788999999988884 45554544
No 75
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=21.71 E-value=1.3e+02 Score=23.15 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLI 60 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~ 60 (110)
|.|.|-+==.=|+.|-+||-++| +++++-|-.-.
T Consensus 8 ~~~~Wl~TyaDm~TLLL~FFVlL-~s~S~vd~~k~ 41 (225)
T PRK06742 8 GSPRWMTTFTDLTMLLLTFFVLL-VATSKQDAVKL 41 (225)
T ss_pred CCcchhhhHHHHHHHHHHHHHHH-HHHhhcCHHHH
Confidence 56899877777888999998888 45666565433
No 76
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=21.59 E-value=3.3e+02 Score=19.85 Aligned_cols=56 Identities=11% Similarity=0.273 Sum_probs=38.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFS-----------SSDSSLILHVGFLLLIALTLFFLLSWFL 81 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~-----------ssd~~l~~HV~~Lv~i~~tLF~LLnwfL 81 (110)
+.|.|....+.++-+.+++.++..+.+. +.+.-...|..-+..+-+++|....-.+
T Consensus 48 ~~~~W~~~as~lm~is~~~~~i~i~~~~~~~~~v~~~g~~~~~r~~~~~i~~~s~li~il~~iavil 114 (163)
T PF06653_consen 48 SEPGWFAAASWLMYISFACFIIMIIFYIIIVYKVRKHGYSCSIRKWFHIISIFSLLIVILTIIAVIL 114 (163)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHheeEecccccHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 4678999999999999887766554433 1233556677777677777777665443
No 77
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.55 E-value=1.9e+02 Score=27.16 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033836 28 PTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQT 84 (110)
Q Consensus 28 PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~t 84 (110)
+.|+..++++-+++.++. -+..+-.++.+..+.=.++++.+-.+.|+|+|-|++-+
T Consensus 620 ~f~~f~~s~~t~~~~~~G-~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI 675 (798)
T KOG3599|consen 620 DFRTFVASIVTLLRYILG-DFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAII 675 (798)
T ss_pred ChHHHHHHHHHHHHHHhc-cCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877777666 33344445556666777788888888999999887654
No 78
>PF11882 DUF3402: Domain of unknown function (DUF3402); InterPro: IPR021819 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 350 to 473 amino acids in length. This domain is found associated with PF07923 from PFAM.
Probab=21.54 E-value=72 Score=27.24 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033836 63 VGFLLLIALTLFFLLSWF 80 (110)
Q Consensus 63 V~~Lv~i~~tLF~LLnwf 80 (110)
-..+=+++.+|++||+||
T Consensus 159 EI~~KA~s~iLlLLLKwF 176 (409)
T PF11882_consen 159 EITLKAVSGILLLLLKWF 176 (409)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778999999999999
No 79
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=21.39 E-value=2.9e+02 Score=19.08 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLLS 78 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLn 78 (110)
|..+|.++=.+.+++.--.+..+++.++ .. .-.+..+--++|.+|.
T Consensus 9 Nk~fw~ali~al~l~~q~v~~~fG~~~~-----~~--~~~l~~~i~~v~~lL~ 54 (78)
T TIGR01598 9 NKATLIALLGALFLAIQSILDNFGVLWL-----SF--NRQLNAPIAAITTILA 54 (78)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcchHH-----HH--HHHHHHHHHHHHHHHH
Confidence 5568988888888887666677766544 11 2245555555666643
No 80
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.28 E-value=70 Score=15.60 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=7.7
Q ss_pred HHHHHcCCCCC
Q 033836 91 HQMLEMNLMPN 101 (110)
Q Consensus 91 ~Qm~Em~l~~~ 101 (110)
++|++.|+.|+
T Consensus 24 ~~M~~~g~~p~ 34 (35)
T TIGR00756 24 KEMLERGIEPD 34 (35)
T ss_pred HHHHHcCCCCC
Confidence 56777777764
No 81
>PRK10459 colanic acid exporter; Provisional
Probab=21.17 E-value=4.3e+02 Score=21.05 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 59 LILHVGFLLLIALTLFFLLSWFLA 82 (110)
Q Consensus 59 l~~HV~~Lv~i~~tLF~LLnwfLa 82 (110)
........+.++...|+.+.|.+.
T Consensus 445 ~~~~l~~~~~~g~~~Y~~~~~~~~ 468 (492)
T PRK10459 445 LGMLLAVQVAAGVLAYLLMIVLSR 468 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566677788888888888764
No 82
>PRK11380 hypothetical protein; Provisional
Probab=21.08 E-value=4.2e+02 Score=23.17 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHH----------hcCCchHHHHHHHHHHHHHHHHH
Q 033836 40 LGVCLAVMFGLAF----------SSSDSSLILHVGFLLLIALTLFF 75 (110)
Q Consensus 40 L~lcla~ML~lAf----------~ssd~~l~~HV~~Lv~i~~tLF~ 75 (110)
+++|+++.++++| .+-|..++.-++|-++.++.+-.
T Consensus 42 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 87 (353)
T PRK11380 42 WGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLIMLG 87 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4555555555544 45566677777766655554433
No 83
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=2.5e+02 Score=23.31 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 033836 24 GVNGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFL 76 (110)
Q Consensus 24 GVN~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~L 76 (110)
+--.|+|.-+-.+.++..+-+++|.+-+|--.+--+.+--..|+.|++++|-|
T Consensus 156 sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 156 SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 44568898888888888888888888887766666666666777788777643
No 84
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=20.79 E-value=2.6e+02 Score=22.39 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 033836 34 KSAFVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLL 77 (110)
Q Consensus 34 ki~fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LL 77 (110)
|-...++.+++-++.+-++++-+.....+.+..+.+++...+.+
T Consensus 100 RD~~~l~~l~~fl~~~~~l~~qs~~~~l~~ll~~~~~~~~L~~l 143 (325)
T PF11992_consen 100 RDYYQLLLLGLFLLAAAFLFSQSLLFALYLLLFLVLLLAALVLL 143 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666555554444444333
No 85
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=20.75 E-value=3.1e+02 Score=19.19 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033836 30 WTTLKSAFVMLGVCLAVMFGLAFSSS----DSSLILHVGFLLLIALTLFFLLSWFLAQT 84 (110)
Q Consensus 30 W~~Lki~fllL~lcla~ML~lAf~ss----d~~l~~HV~~Lv~i~~tLF~LLnwfLa~t 84 (110)
|.++.+..-.|..++.+=|.++.+-. +-.-+..|-=++.+.++++++..|.+.+.
T Consensus 15 ~~~l~ls~P~L~~alvVGlvIsi~QA~TQIQEqTLsFvPKliav~~~l~~~gpWm~~~l 73 (88)
T PRK15350 15 WIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGIL 73 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777666655432 33345667778899999999999987653
No 86
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=20.11 E-value=1.5e+02 Score=21.37 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=19.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 033836 56 DSSLILHVGFLLLIALTLFFLLSWF 80 (110)
Q Consensus 56 d~~l~~HV~~Lv~i~~tLF~LLnwf 80 (110)
|..++.|.+|+..+-...|+...|.
T Consensus 6 d~~~~~H~~filFvv~G~~l~~r~~ 30 (112)
T PF10861_consen 6 DLVLVVHLLFILFVVFGGFLAWRWP 30 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888877777777643
No 87
>PRK10873 hypothetical protein; Provisional
Probab=20.08 E-value=3.6e+02 Score=19.67 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=10.1
Q ss_pred chhHHHHHhhcCCC
Q 033836 11 SSAEAVFLGALAPG 24 (110)
Q Consensus 11 sSaeAVllGALa~G 24 (110)
+-+-+|.+||++.=
T Consensus 13 ~g~~aValGA~gAH 26 (131)
T PRK10873 13 SGFIYVALGAFGAH 26 (131)
T ss_pred HHHHHHHHHHHHHc
Confidence 45678888887654
Done!