Query 033836
Match_columns 110
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 11:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hqs_H Peptidoglycan-associate 38.1 17 0.00059 23.7 2.0 33 77-109 54-86 (118)
2 1v54_D Cytochrome C oxidase su 35.2 56 0.0019 23.8 4.5 42 60-101 82-131 (147)
3 2aiz_P Outer membrane protein 30.9 26 0.00089 23.5 2.0 33 77-109 78-110 (134)
4 3oon_A Outer membrane protein 28.9 31 0.0011 22.1 2.1 33 77-109 65-98 (123)
5 2prr_A Alkylhydroperoxidase AH 28.6 62 0.0021 22.2 3.7 36 67-103 162-197 (197)
6 2kgw_A Outer membrane protein 28.1 30 0.001 22.6 1.9 33 77-109 72-104 (129)
7 2y69_D Cytochrome C oxidase su 27.7 85 0.0029 23.4 4.5 43 59-101 103-153 (169)
8 2d68_A FOP, FGFR1OP; alpha hel 27.2 68 0.0023 21.2 3.5 30 77-106 38-71 (82)
9 3s0x_A Peptidase A24B, FLAK do 25.2 2.2E+02 0.0075 21.6 6.5 41 37-77 37-77 (237)
10 2k1s_A Inner membrane lipoprot 24.4 38 0.0013 22.8 1.9 33 77-109 82-114 (149)
11 1r1m_A Outer membrane protein 23.3 42 0.0014 23.5 2.0 33 77-109 63-95 (164)
12 3cyp_B Chemotaxis protein MOTB 23.0 45 0.0015 22.2 2.0 32 78-109 58-89 (138)
13 3td3_A Outer membrane protein 22.8 46 0.0016 21.4 2.0 32 78-109 63-95 (123)
14 2zy9_A Mg2+ transporter MGTE; 21.5 3.1E+02 0.01 21.8 7.1 82 11-101 355-443 (473)
No 1
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=38.13 E-value=17 Score=23.68 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=27.3
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+.++...-..+|
T Consensus 54 ~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 86 (118)
T 2hqs_H 54 YNISLGERRANAVKMYLQGKGVSADQISIVSYG 86 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 499999999999999999999988665554444
No 2
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=35.21 E-value=56 Score=23.82 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhcCccHHHH------HHHcCCCCC
Q 033836 60 ILHVGFLLLIALTLFFLLSWFLA--QTGLVSVEHQ------MLEMNLMPN 101 (110)
Q Consensus 60 ~~HV~~Lv~i~~tLF~LLnwfLa--~tglv~vE~Q------m~Em~l~~~ 101 (110)
+.=|++.+.+++.+|+++.-|.. .--.++-|.| |++|+..|.
T Consensus 82 ~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nPi 131 (147)
T 1v54_D 82 VGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPI 131 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 44466667788888888887743 3334567877 899998884
No 3
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=30.88 E-value=26 Score=23.52 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+.++...-..+|
T Consensus 78 ~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 110 (134)
T 2aiz_P 78 YNIALGQRRADAVKGYLAGKGVDAGKLGTVSYG 110 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 499999999999999999999988665544444
No 4
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=28.88 E-value=31 Score=22.12 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHHHHHHhcCccHHHHHHHcCCC-CCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLM-PNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~-~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+. ++...-..+|
T Consensus 65 ~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~G 98 (123)
T 3oon_A 65 EMHELSEKRARAIGNYLIKMKVKDKDQILFKGWG 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEEc
Confidence 48999999999999999999998 6554444333
No 5
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=28.60 E-value=62 Score=22.24 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHcCCCCCcc
Q 033836 67 LLIALTLFFLLSWFLAQTGLVSVEHQMLEMNLMPNDH 103 (110)
Q Consensus 67 v~i~~tLF~LLnwfLa~tglv~vE~Qm~Em~l~~~~~ 103 (110)
++..+.+|-..|++..-.|. +++.+...||-.|.++
T Consensus 162 l~~~ia~~~~~nr~~~~~~~-~~d~~~~~~~r~p~~~ 197 (197)
T 2prr_A 162 IAAITAFFGLSNRMANTIGM-RPNDEFFLMGRVPKSK 197 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CCCHHHHHTTSSCC--
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCChhhhhccCCCCCC
Confidence 34456688999999998887 5667899999887654
No 6
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=28.14 E-value=30 Score=22.61 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=27.0
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+.++...-..+|
T Consensus 72 ~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 104 (129)
T 2kgw_A 72 INIPLSAQRAKIVADYLVARGVAGDHIATVGLG 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEc
Confidence 589999999999999999999987665544444
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.72 E-value=85 Score=23.39 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhcCccHHHH------HHHcCCCCC
Q 033836 59 LILHVGFLLLIALTLFFLLSWFLA--QTGLVSVEHQ------MLEMNLMPN 101 (110)
Q Consensus 59 l~~HV~~Lv~i~~tLF~LLnwfLa--~tglv~vE~Q------m~Em~l~~~ 101 (110)
++.=|++.+.+++.+|+++.-|.. .--.++-|.| |++|+..|.
T Consensus 103 V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NPi 153 (169)
T 2y69_D 103 VVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPI 153 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 344566667788888888887743 3334567877 899998884
No 8
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=27.24 E-value=68 Score=21.21 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHhcCc----cHHHHHHHcCCCCCccccc
Q 033836 77 LSWFLAQTGLV----SVEHQMLEMNLMPNDHQRS 106 (110)
Q Consensus 77 LnwfLa~tglv----~vE~Qm~Em~l~~~~~~~~ 106 (110)
++-|.+|+|+. +-++=++|+|+..++.+++
T Consensus 38 lsVf~pEs~l~~~~~~R~~La~eLgl~~~~~~~~ 71 (82)
T 2d68_A 38 LAVFQPETSTLQGLEGRENLARDLGIIEAEGTVG 71 (82)
T ss_dssp HHHHHHHHTCC---CCHHHHHHHTTCCCCTTTTT
T ss_pred HHhhhhccCCCCCCCCHHHHHHHcCCCCCCCCCC
Confidence 45678999985 4557899999998765543
No 9
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=25.19 E-value=2.2e+02 Score=21.63 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 033836 37 FVMLGVCLAVMFGLAFSSSDSSLILHVGFLLLIALTLFFLL 77 (110)
Q Consensus 37 fllL~lcla~ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LL 77 (110)
+.++.+++...+...+..++...+.|...-..++..+++++
T Consensus 37 ~~ll~~gi~l~~~~~~~~~~~~~l~~~~~~~~i~f~l~~~l 77 (237)
T 3s0x_A 37 IFLAVFGVLFAIYSSITLLDYSILINSISGFVICFILGYMM 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344455445566544333444444433
No 10
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.44 E-value=38 Score=22.81 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+.++...-..+|
T Consensus 82 ~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 114 (149)
T 2k1s_A 82 LNMRLSQQRADSVASALITQGVDASRIRTQGLG 114 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEc
Confidence 689999999999999999999988665544444
No 11
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=23.32 E-value=42 Score=23.51 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|+.++...-..+|
T Consensus 63 ~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G 95 (164)
T 1r1m_A 63 YNQALSERRAYVVANNLVSNGVPVSRISAVGLG 95 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 489999999999999999999988665554444
No 12
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=22.98 E-value=45 Score=22.25 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 78 SWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 78 nwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
||-||+-+--.|-+.+.+.|+.++...-...|
T Consensus 58 N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 89 (138)
T 3cyp_B 58 HYELAANRAYRVMKVLIQYGVNPNQLSFSSYG 89 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEC
Confidence 89999999999999999999988655544444
No 13
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=22.79 E-value=46 Score=21.38 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.1
Q ss_pred HHHHHHhcCccHHHHHHH-cCCCCCccccccCC
Q 033836 78 SWFLAQTGLVSVEHQMLE-MNLMPNDHQRSNKG 109 (110)
Q Consensus 78 nwfLa~tglv~vE~Qm~E-m~l~~~~~~~~~kg 109 (110)
||-||+-+--.|-+.+.+ .|+.++...-...|
T Consensus 63 N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~G 95 (123)
T 3td3_A 63 NERLSLARANSVKSALVNEYNVDASRLSTQGFA 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEEC
Confidence 899999999999999998 79998665544444
No 14
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=21.53 E-value=3.1e+02 Score=21.76 Aligned_cols=82 Identities=13% Similarity=0.335 Sum_probs=39.6
Q ss_pred chhHHHHHhhcCCC-CCChhHH-----HHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033836 11 SSAEAVFLGALAPG-VNGPTWT-----TLKSAFVMLGVCLAV-MFGLAFSSSDSSLILHVGFLLLIALTLFFLLSWFLAQ 83 (110)
Q Consensus 11 sSaeAVllGALa~G-VN~PTW~-----~Lki~fllL~lcla~-ML~lAf~ssd~~l~~HV~~Lv~i~~tLF~LLnwfLa~ 83 (110)
+-+-++++=+|+.| ++...|. .+++.+ ++|+.+++ +...++.+.+ ..+.+.+.++..+-+++.-+.
T Consensus 355 tq~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~-~~g~~~~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~a~~~-- 427 (473)
T 2zy9_A 355 NQSATLIIRALATRDLDLRDWRRVFLKEMGVGL-LLGLTLSFLLVGKVYWDGH----PLLLPVVGVSLVLIVFFANLV-- 427 (473)
T ss_dssp HHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTC----TTSHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHH--
Confidence 34567788888888 6655543 334443 34444444 4444666654 123333333333333332221
Q ss_pred hcCccHHHHHHHcCCCCC
Q 033836 84 TGLVSVEHQMLEMNLMPN 101 (110)
Q Consensus 84 tglv~vE~Qm~Em~l~~~ 101 (110)
..++|. =++.+|+.|.
T Consensus 428 g~~~p~--~~~~~~~DPa 443 (473)
T 2zy9_A 428 GAMLPF--LLRRLGVDPA 443 (473)
T ss_dssp HTTHHH--HHHHHTCCGG
T ss_pred HHHHHH--HHHHcCCCcc
Confidence 123343 3566676663
Done!