Query 033836
Match_columns 110
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 11:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bwba1 a.5.2.1 (A:328-371) DS 56.8 1.4 0.0001 25.3 0.5 12 91-102 10-21 (44)
2 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 44.6 2.7 0.0002 24.7 0.4 12 91-102 13-24 (50)
3 d2daha1 a.5.2.1 (A:8-48) Ubiqu 42.4 3.1 0.00022 23.4 0.4 12 91-102 7-18 (41)
4 d1m0ka_ f.13.1.1 (A:) Bacterio 41.5 44 0.0032 22.9 6.7 33 26-58 2-34 (227)
5 d2hqsc1 d.79.7.1 (C:68-173) Pe 39.4 7.8 0.00056 23.0 2.0 32 78-109 51-82 (106)
6 d2aizp1 d.79.7.1 (P:1-134) Pep 39.4 7.4 0.00054 24.6 2.0 33 77-109 78-110 (134)
7 d1veja1 a.5.2.1 (A:8-68) 49314 39.3 3.6 0.00026 24.9 0.4 13 91-103 27-39 (61)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 25.4 31 0.0023 24.6 3.6 31 32-62 2-32 (248)
9 d1udxa3 d.242.1.1 (A:341-416) 24.3 22 0.0016 21.2 2.3 26 78-103 37-62 (76)
10 d1nd9a_ a.6.1.6 (A:) N-termina 22.8 17 0.0013 20.8 1.4 15 87-101 14-31 (49)
No 1
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.81 E-value=1.4 Score=25.31 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=10.0
Q ss_pred HHHHHcCCCCCc
Q 033836 91 HQMLEMNLMPND 102 (110)
Q Consensus 91 ~Qm~Em~l~~~~ 102 (110)
+||+|||..+.+
T Consensus 10 ~qL~~MGF~d~~ 21 (44)
T d2bwba1 10 RQLNDMGFFDFD 21 (44)
T ss_dssp HHHHHTTCCCHH
T ss_pred HHHHHcCCCcHH
Confidence 699999998744
No 2
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.61 E-value=2.7 Score=24.70 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=9.9
Q ss_pred HHHHHcCCCCCc
Q 033836 91 HQMLEMNLMPND 102 (110)
Q Consensus 91 ~Qm~Em~l~~~~ 102 (110)
+||+|||..+.+
T Consensus 13 ~qL~~MGF~d~~ 24 (50)
T d2dnaa1 13 ECLQAMGFVNYN 24 (50)
T ss_dssp HHHHHHTCCCHH
T ss_pred HHHHHcCCCCHH
Confidence 689999998744
No 3
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.40 E-value=3.1 Score=23.36 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=9.7
Q ss_pred HHHHHcCCCCCc
Q 033836 91 HQMLEMNLMPND 102 (110)
Q Consensus 91 ~Qm~Em~l~~~~ 102 (110)
+|++|||..+.+
T Consensus 7 ~~L~~MGF~d~~ 18 (41)
T d2daha1 7 EQLRSMGFLNRE 18 (41)
T ss_dssp HHHHHHTCCCHH
T ss_pred HHHHHcCCCCHH
Confidence 689999998744
No 4
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=41.47 E-value=44 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 033836 26 NGPTWTTLKSAFVMLGVCLAVMFGLAFSSSDSS 58 (110)
Q Consensus 26 N~PTW~~Lki~fllL~lcla~ML~lAf~ssd~~ 58 (110)
-+|+|.-+-..+...+++....+...++.+|..
T Consensus 2 ~~~~~~wlw~~~~~m~~a~v~f~~~~~~v~~~~ 34 (227)
T d1m0ka_ 2 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPD 34 (227)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 379999998888888888777777777766644
No 5
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=39.40 E-value=7.8 Score=23.05 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=26.8
Q ss_pred HHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 78 SWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 78 nwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
||-||+-+--.|.+.+.+.|+.++......+|
T Consensus 51 N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G 82 (106)
T d2hqsc1 51 NISLGERRANAVKMYLQGKGVSADQISIVSYG 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred hhhHHHHHHhHHHHHHHhcCCccceEEEEEec
Confidence 78899999999999999999998766655554
No 6
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]}
Probab=39.39 E-value=7.4 Score=24.55 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=27.7
Q ss_pred HHHHHHHhcCccHHHHHHHcCCCCCccccccCC
Q 033836 77 LSWFLAQTGLVSVEHQMLEMNLMPNDHQRSNKG 109 (110)
Q Consensus 77 LnwfLa~tglv~vE~Qm~Em~l~~~~~~~~~kg 109 (110)
-||-||+-+--.|-+.+.+.|++++.....-+|
T Consensus 78 ~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G 110 (134)
T d2aizp1 78 YNIALGQRRADAVKGYLAGKGVDAGKLGTVSYG 110 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred cchhHHHHHHHHHHHHHHHcCCccccceeEEcc
Confidence 489999999999999999999998766655555
No 7
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.34 E-value=3.6 Score=24.92 Aligned_cols=13 Identities=8% Similarity=0.273 Sum_probs=10.2
Q ss_pred HHHHHcCCCCCcc
Q 033836 91 HQMLEMNLMPNDH 103 (110)
Q Consensus 91 ~Qm~Em~l~~~~~ 103 (110)
+||+|||..+.++
T Consensus 27 ~qL~eMGF~d~~~ 39 (61)
T d1veja1 27 EELKALGFANRDA 39 (61)
T ss_dssp HHHHHHTCCCHHH
T ss_pred HHHHHcCCCCHHH
Confidence 6899999987543
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=25.37 E-value=31 Score=24.61 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 033836 32 TLKSAFVMLGVCLAVMFGLAFSSSDSSLILH 62 (110)
Q Consensus 32 ~Lki~fllL~lcla~ML~lAf~ssd~~l~~H 62 (110)
+||+++|-+--.+++.+.....+.+++...=
T Consensus 2 ~lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~ 32 (248)
T d2r6gf1 2 ALKWSVLGLLGLLVGYLVVLMYAQGEYLFAI 32 (248)
T ss_dssp CCTHHHHHHHHHHHHHTHHHHHGGGCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 4677777777777777666666666665543
No 9
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.26 E-value=22 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=19.2
Q ss_pred HHHHHHhcCccHHHHHHHcCCCCCcc
Q 033836 78 SWFLAQTGLVSVEHQMLEMNLMPNDH 103 (110)
Q Consensus 78 nwfLa~tglv~vE~Qm~Em~l~~~~~ 103 (110)
++|...-.-..++++++++|+.+-|.
T Consensus 37 ~~f~~~l~~~Gv~~~L~~~Gak~GD~ 62 (76)
T d1udxa3 37 GYLQEVFRRQGVEAALRAKGVRAGDL 62 (76)
T ss_dssp HHHHHHHHHTTHHHHHHTTTCCTTCE
T ss_pred HHHHHHHHHCChHHHHHHcCCCCCCE
Confidence 45555555667899999999987654
No 10
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=22.78 E-value=17 Score=20.77 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.8
Q ss_pred ccHH---HHHHHcCCCCC
Q 033836 87 VSVE---HQMLEMNLMPN 101 (110)
Q Consensus 87 v~vE---~Qm~Em~l~~~ 101 (110)
+||| +||++-||+++
T Consensus 14 ~~vd~Ll~Ql~~AGl~ks 31 (49)
T d1nd9a_ 14 TSVERLVQQFADAGIRKS 31 (49)
T ss_dssp SSHHHHHHHHHHHTSCCS
T ss_pred cCHHHHHHHHHHcCCCCC
Confidence 4665 69999999874
Done!