Query 033840
Match_columns 110
No_of_seqs 102 out of 1018
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 1.2E-35 2.6E-40 204.0 13.1 100 1-101 81-185 (186)
2 PRK04143 hypothetical protein; 100.0 3.5E-33 7.5E-38 200.6 14.3 107 1-107 150-262 (264)
3 cd02908 Macro_Appr_pase_like M 100.0 1.3E-32 2.8E-37 186.2 13.9 104 1-104 57-164 (165)
4 cd02907 Macro_Af1521_BAL_like 100.0 1.4E-32 2.9E-37 187.6 14.0 106 1-106 63-174 (175)
5 PRK00431 RNase III inhibitor; 100.0 7.9E-32 1.7E-36 184.1 14.1 108 1-108 64-175 (177)
6 cd02905 Macro_GDAP2_like Macro 100.0 3.3E-32 7.2E-37 180.1 10.1 81 1-81 58-140 (140)
7 COG2110 Predicted phosphatase 100.0 3.3E-29 7.2E-34 170.9 12.8 108 1-108 66-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 7.6E-29 1.6E-33 165.2 9.5 78 1-78 67-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 5E-28 1.1E-32 159.5 9.9 78 1-80 60-137 (137)
10 KOG2633 Hismacro and SEC14 dom 99.9 6.1E-26 1.3E-30 156.1 10.1 105 1-105 84-194 (200)
11 cd03330 Macro_2 Macro domain, 99.9 1.1E-23 2.5E-28 137.8 9.8 76 1-77 57-132 (133)
12 PF01661 Macro: Macro domain; 99.9 6.3E-23 1.4E-27 130.7 8.2 73 1-73 44-118 (118)
13 cd02900 Macro_Appr_pase Macro 99.9 1.9E-21 4.2E-26 133.8 10.2 81 1-81 93-186 (186)
14 PRK13341 recombination factor 99.8 9.8E-23 2.1E-27 163.1 0.6 102 6-108 592-706 (725)
15 smart00506 A1pp Appr-1"-p proc 99.8 2.8E-20 6E-25 120.9 8.7 73 1-73 60-133 (133)
16 cd02749 Macro Macro domain, a 99.8 1E-18 2.2E-23 115.5 9.5 77 1-77 61-146 (147)
17 cd02901 Macro_Poa1p_like Macro 99.7 6.8E-16 1.5E-20 101.6 9.2 78 2-79 62-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.2 4.1E-10 8.8E-15 75.6 10.5 85 4-94 67-153 (154)
19 TIGR02452 conserved hypothetic 98.8 5.3E-08 1.1E-12 70.5 9.3 87 15-101 164-265 (266)
20 PF14519 Macro_2: Macro-like d 98.3 2.7E-06 5.9E-11 61.8 6.7 72 9-81 134-214 (280)
21 COG4295 Uncharacterized protei 98.1 5.1E-05 1.1E-09 53.6 9.3 78 30-107 199-281 (285)
22 PF10154 DUF2362: Uncharacteri 96.0 0.13 2.9E-06 40.7 10.3 108 1-108 376-502 (510)
23 cd03331 Macro_Poa1p_like_SNF2 95.9 0.086 1.9E-06 35.3 7.8 64 13-77 82-149 (152)
24 KOG1502 Flavonol reductase/cin 85.1 2.7 6E-05 31.6 5.3 44 11-54 78-126 (327)
25 PHA00684 hypothetical protein 84.9 4.3 9.3E-05 26.4 5.4 48 29-76 54-101 (128)
26 PLN02214 cinnamoyl-CoA reducta 83.9 2.7 5.9E-05 31.1 4.9 44 11-54 81-124 (342)
27 PF01073 3Beta_HSD: 3-beta hyd 83.1 4.9 0.00011 29.2 5.9 44 11-54 66-113 (280)
28 CHL00194 ycf39 Ycf39; Provisio 81.5 18 0.00039 26.3 8.4 44 11-54 64-107 (317)
29 COG2388 Predicted acetyltransf 79.7 3.1 6.8E-05 25.9 3.3 41 13-56 40-80 (99)
30 PLN02657 3,8-divinyl protochlo 78.0 23 0.0005 26.9 8.3 44 11-54 136-179 (390)
31 PRK14837 undecaprenyl pyrophos 73.4 8.9 0.00019 27.5 4.6 47 34-81 36-82 (230)
32 COG1252 Ndh NADH dehydrogenase 72.5 32 0.00068 26.8 7.7 105 3-107 90-214 (405)
33 PRK15181 Vi polysaccharide bio 71.0 9.5 0.00021 28.2 4.5 45 12-56 91-140 (348)
34 PF13460 NAD_binding_10: NADH( 70.6 9.5 0.00021 25.1 4.1 36 11-54 60-95 (183)
35 PRK06052 5-methyltetrahydropte 69.6 20 0.00044 27.3 6.0 47 30-77 141-190 (344)
36 TIGR00055 uppS undecaprenyl di 68.7 13 0.00029 26.5 4.6 47 34-81 29-75 (226)
37 cd06155 eu_AANH_C_1 A group of 68.6 24 0.00052 21.5 5.9 26 84-109 49-74 (101)
38 cd00475 CIS_IPPS Cis (Z)-Isopr 68.3 13 0.00029 26.4 4.6 47 34-81 30-76 (221)
39 PLN02662 cinnamyl-alcohol dehy 67.3 27 0.00059 25.1 6.2 44 11-54 76-124 (322)
40 PRK14833 undecaprenyl pyrophos 65.2 17 0.00036 26.1 4.6 46 35-81 35-80 (233)
41 PRK14842 undecaprenyl pyrophos 64.9 17 0.00036 26.3 4.6 47 34-81 38-84 (241)
42 PLN02778 3,5-epimerase/4-reduc 64.1 16 0.00035 26.6 4.5 44 11-54 57-108 (298)
43 PRK14829 undecaprenyl pyrophos 64.0 19 0.00041 26.0 4.7 40 34-73 44-83 (243)
44 PRK14841 undecaprenyl pyrophos 63.6 18 0.00039 26.0 4.5 40 34-73 33-72 (233)
45 KOG3716 Carnitine O-acyltransf 63.0 18 0.0004 30.0 4.9 50 28-77 516-568 (764)
46 PRK14840 undecaprenyl pyrophos 62.3 20 0.00043 26.0 4.6 39 35-73 53-91 (250)
47 PF01255 Prenyltransf: Putativ 62.2 22 0.00048 25.1 4.8 46 35-81 25-70 (223)
48 PRK14831 undecaprenyl pyrophos 62.2 19 0.00041 26.1 4.5 39 34-72 50-88 (249)
49 PRK14832 undecaprenyl pyrophos 61.9 20 0.00044 26.1 4.6 46 34-80 48-93 (253)
50 PRK14839 undecaprenyl pyrophos 61.9 21 0.00046 25.8 4.6 46 34-80 39-84 (239)
51 PLN02986 cinnamyl-alcohol dehy 60.8 36 0.00079 24.6 5.9 44 11-54 77-125 (322)
52 PRK14838 undecaprenyl pyrophos 60.6 22 0.00049 25.6 4.6 47 34-81 40-86 (242)
53 PTZ00325 malate dehydrogenase; 59.1 40 0.00087 25.3 5.9 44 11-54 76-122 (321)
54 PRK06199 ornithine cyclodeamin 59.1 64 0.0014 24.7 7.1 71 30-109 134-206 (379)
55 PRK14827 undecaprenyl pyrophos 58.9 74 0.0016 23.8 8.3 40 34-73 97-136 (296)
56 PRK10240 undecaprenyl pyrophos 58.5 28 0.0006 24.9 4.7 46 35-81 24-69 (229)
57 PRK14834 undecaprenyl pyrophos 58.3 31 0.00067 25.0 5.0 40 34-73 44-83 (249)
58 PRK14828 undecaprenyl pyrophos 58.0 28 0.0006 25.4 4.7 40 34-73 57-96 (256)
59 PTZ00372 endonuclease 4-like p 57.4 91 0.002 24.4 8.3 59 32-92 215-274 (413)
60 cd06150 YjgF_YER057c_UK114_lik 57.3 42 0.00091 20.4 5.9 26 84-109 52-77 (105)
61 PF13353 Fer4_12: 4Fe-4S singl 56.7 47 0.001 20.8 5.6 49 2-54 9-58 (139)
62 PRK14835 undecaprenyl pyrophos 56.7 31 0.00068 25.4 4.9 40 34-73 71-110 (275)
63 PTZ00349 dehydrodolichyl dipho 56.5 28 0.0006 26.3 4.6 40 34-73 49-88 (322)
64 cd06154 YjgF_YER057c_UK114_lik 56.4 47 0.001 20.7 5.5 26 84-109 67-92 (119)
65 KOG1602 Cis-prenyltransferase 56.0 27 0.00058 25.7 4.3 40 34-73 66-105 (271)
66 KOG1577 Aldo/keto reductase fa 55.3 13 0.00027 27.8 2.6 27 53-79 14-40 (300)
67 COG0451 WcaG Nucleoside-diphos 52.6 43 0.00094 23.7 5.1 43 13-55 66-114 (314)
68 PLN02725 GDP-4-keto-6-deoxyman 52.5 32 0.00069 24.4 4.4 44 11-54 49-98 (306)
69 PF01042 Ribonuc_L-PSP: Endori 52.2 56 0.0012 20.4 5.7 26 84-109 66-91 (121)
70 PRK14830 undecaprenyl pyrophos 51.8 38 0.00082 24.6 4.6 43 31-73 49-91 (251)
71 PF09039 HTH_Tnp_Mu_2: Mu DNA 51.4 11 0.00024 23.8 1.6 26 31-59 49-74 (108)
72 TIGR03610 RutC pyrimidine util 51.2 62 0.0014 20.6 5.5 26 84-109 73-98 (127)
73 PF14542 Acetyltransf_CG: GCN5 50.5 49 0.0011 19.2 4.4 40 14-56 24-63 (78)
74 PRK11401 putative endoribonucl 49.8 65 0.0014 20.4 5.9 43 67-109 47-96 (129)
75 PRK14836 undecaprenyl pyrophos 49.6 38 0.00082 24.6 4.3 49 31-80 41-89 (253)
76 PF05378 Hydant_A_N: Hydantoin 49.6 45 0.00097 22.6 4.5 26 35-60 134-159 (176)
77 PF12147 Methyltransf_20: Puta 49.2 97 0.0021 23.3 6.4 67 31-106 117-183 (311)
78 TIGR00004 endoribonuclease L-P 49.0 64 0.0014 20.1 5.4 25 85-109 72-96 (124)
79 PF02789 Peptidase_M17_N: Cyto 48.0 64 0.0014 19.8 6.6 47 29-78 67-113 (126)
80 TIGR03234 OH-pyruv-isom hydrox 47.9 94 0.002 21.7 7.2 50 31-81 80-129 (254)
81 COG4739 Uncharacterized protei 47.6 85 0.0018 21.3 5.4 41 67-107 11-53 (182)
82 COG4822 CbiK Cobalamin biosynt 46.8 1.1E+02 0.0024 22.2 6.8 66 39-109 64-132 (265)
83 cd00448 YjgF_YER057c_UK114_fam 46.5 61 0.0013 19.2 5.5 26 84-109 55-80 (107)
84 PLN02650 dihydroflavonol-4-red 45.9 79 0.0017 23.2 5.7 45 11-55 77-126 (351)
85 KOG2495 NADH-dehydrogenase (ub 44.3 1.6E+02 0.0036 23.5 8.9 101 8-108 155-279 (491)
86 PF07355 GRDB: Glycine/sarcosi 44.0 1.5E+02 0.0032 22.8 7.5 55 14-73 49-106 (349)
87 PRK10810 anti-sigma28 factor F 44.0 30 0.00066 21.5 2.7 27 56-82 70-96 (98)
88 COG2423 Predicted ornithine cy 43.6 1.4E+02 0.003 22.6 6.6 70 30-109 109-180 (330)
89 PLN00198 anthocyanidin reducta 43.2 1.1E+02 0.0024 22.3 6.0 44 11-54 80-128 (338)
90 TIGR01777 yfcH conserved hypot 41.2 1E+02 0.0022 21.5 5.5 40 11-50 57-103 (292)
91 PF04316 FlgM: Anti-sigma-28 f 41.1 22 0.00048 19.5 1.6 21 56-76 36-56 (57)
92 TIGR02197 heptose_epim ADP-L-g 40.9 64 0.0014 22.9 4.5 43 11-54 66-111 (314)
93 COG0020 UppS Undecaprenyl pyro 40.8 66 0.0014 23.3 4.4 42 31-72 43-84 (245)
94 PRK07475 hypothetical protein; 39.9 1.4E+02 0.003 21.3 6.6 64 32-96 62-134 (245)
95 TIGR01578 MiaB-like-B MiaB-lik 39.9 93 0.002 24.0 5.4 56 4-66 139-196 (420)
96 KOG4506 Uncharacterized conser 39.9 27 0.00059 27.3 2.4 27 34-60 457-483 (598)
97 PRK11150 rfaD ADP-L-glycero-D- 38.2 1.2E+02 0.0026 21.7 5.5 40 11-51 68-111 (308)
98 KOG1579 Homocysteine S-methylt 37.7 1.8E+02 0.0039 22.0 8.1 76 11-93 112-200 (317)
99 smart00701 PGRP Animal peptido 36.8 1.2E+02 0.0026 19.8 6.3 34 47-81 91-124 (142)
100 COG0648 Nfo Endonuclease IV [D 36.1 1.8E+02 0.0039 21.6 8.1 63 12-81 68-131 (280)
101 KOG1576 Predicted oxidoreducta 35.6 1E+02 0.0022 23.2 4.7 53 21-76 243-303 (342)
102 COG3623 SgaU Putative L-xylulo 34.4 69 0.0015 23.5 3.6 26 29-54 90-115 (287)
103 COG0496 SurE Predicted acid ph 34.3 97 0.0021 22.6 4.4 53 30-82 99-154 (252)
104 PLN02240 UDP-glucose 4-epimera 34.3 1E+02 0.0022 22.5 4.7 46 11-56 81-131 (352)
105 PRK14338 (dimethylallyl)adenos 33.5 2.3E+02 0.0051 22.1 10.0 80 4-91 161-244 (459)
106 PRK00164 moaA molybdenum cofac 33.5 60 0.0013 23.9 3.4 48 3-54 22-71 (331)
107 cd08616 PI-PLCXD1c Catalytic d 33.4 1.6E+02 0.0035 21.6 5.6 41 69-109 98-145 (290)
108 smart00481 POLIIIAc DNA polyme 33.3 64 0.0014 17.7 2.8 22 37-58 17-38 (67)
109 PF10719 ComFB: Late competenc 33.3 46 0.00099 19.7 2.3 38 8-45 39-80 (85)
110 COG5039 Exopolysaccharide bios 32.1 2.2E+02 0.0048 21.6 6.0 24 83-106 145-168 (339)
111 PRK09997 hydroxypyruvate isome 31.6 1.9E+02 0.004 20.4 7.1 50 31-81 81-130 (258)
112 PF02423 OCD_Mu_crystall: Orni 31.2 2.2E+02 0.0047 21.0 7.0 67 30-106 107-175 (313)
113 COG0279 GmhA Phosphoheptose is 31.1 66 0.0014 22.2 2.9 19 36-54 124-142 (176)
114 TIGR02371 ala_DH_arch alanine 31.1 2.2E+02 0.0048 21.1 7.9 67 30-106 107-175 (325)
115 COG1618 Predicted nucleotide k 30.8 1.7E+02 0.0036 20.3 4.9 49 59-108 76-127 (179)
116 COG4019 Uncharacterized protei 30.5 1.6E+02 0.0035 19.4 4.6 34 74-107 26-59 (156)
117 PF07082 DUF1350: Protein of u 30.3 2.2E+02 0.0047 20.8 7.3 61 12-81 16-76 (250)
118 COG1867 TRM1 N2,N2-dimethylgua 30.1 62 0.0014 25.0 3.0 19 12-30 263-281 (380)
119 TIGR03589 PseB UDP-N-acetylglu 29.5 2.3E+02 0.0049 20.7 8.6 66 12-77 75-145 (324)
120 PF07611 DUF1574: Protein of u 29.0 71 0.0015 24.4 3.1 61 34-95 251-313 (345)
121 PF05189 RTC_insert: RNA 3'-te 28.4 69 0.0015 19.5 2.5 24 59-82 78-101 (103)
122 PRK13660 hypothetical protein; 28.1 2.1E+02 0.0044 19.8 7.8 60 28-93 22-81 (182)
123 PF01261 AP_endonuc_2: Xylose 28.1 1E+02 0.0023 20.2 3.6 50 9-59 82-136 (213)
124 COG0113 HemB Delta-aminolevuli 27.9 2.2E+02 0.0048 21.6 5.4 44 38-81 64-114 (330)
125 COG0247 GlpC Fe-S oxidoreducta 27.6 2.6E+02 0.0056 20.8 8.2 75 32-108 161-242 (388)
126 PF10307 DUF2410: Hypothetical 27.5 2.2E+02 0.0048 19.9 5.4 37 71-107 120-156 (197)
127 PF03481 SUA5: Putative GTP-bi 27.2 1.7E+02 0.0036 18.4 5.2 44 64-107 78-123 (125)
128 cd01225 PH_Cool_Pix Cool (clon 27.2 1.3E+02 0.0029 19.1 3.7 27 83-109 84-110 (111)
129 PRK13361 molybdenum cofactor b 27.0 77 0.0017 23.5 3.0 47 3-54 19-67 (329)
130 PF02563 Poly_export: Polysacc 26.7 1.2E+02 0.0027 17.5 3.4 36 49-84 38-74 (82)
131 TIGR02109 PQQ_syn_pqqE coenzym 26.7 1.3E+02 0.0028 22.4 4.2 48 3-54 12-59 (358)
132 COG0266 Nei Formamidopyrimidin 26.5 40 0.00087 24.9 1.4 62 2-63 166-232 (273)
133 PRK07201 short chain dehydroge 25.9 1.6E+02 0.0036 23.5 4.9 44 11-54 77-122 (657)
134 TIGR02666 moaA molybdenum cofa 25.5 1.2E+02 0.0025 22.4 3.7 48 3-54 15-65 (334)
135 cd00443 ADA_AMPD Adenosine/AMP 25.2 2.8E+02 0.006 20.3 8.2 54 30-83 41-97 (305)
136 PRK11908 NAD-dependent epimera 25.1 1.8E+02 0.0039 21.3 4.6 43 11-54 68-115 (347)
137 PF01370 Epimerase: NAD depend 25.1 85 0.0018 21.1 2.8 51 12-63 66-121 (236)
138 COG4820 EutJ Ethanolamine util 24.6 2.2E+02 0.0047 20.6 4.7 50 58-108 179-250 (277)
139 PRK06046 alanine dehydrogenase 24.6 3E+02 0.0064 20.4 8.0 68 30-107 108-177 (326)
140 PRK05086 malate dehydrogenase; 24.6 2.9E+02 0.0064 20.4 9.7 64 11-80 69-135 (312)
141 PLN02427 UDP-apiose/xylose syn 24.4 2E+02 0.0044 21.4 4.9 43 11-54 86-133 (386)
142 PF06672 DUF1175: Protein of u 24.3 44 0.00096 23.8 1.2 31 20-50 44-80 (216)
143 PRK09856 fructoselysine 3-epim 24.1 2.6E+02 0.0057 19.6 6.9 50 31-81 86-135 (275)
144 PF06908 DUF1273: Protein of u 24.1 2.4E+02 0.0052 19.2 4.8 57 28-90 22-78 (177)
145 COG0251 TdcF Putative translat 24.1 2E+02 0.0044 18.4 5.6 45 65-109 48-99 (130)
146 PRK15460 cpsB mannose-1-phosph 23.8 1E+02 0.0023 24.5 3.3 26 29-54 124-149 (478)
147 PF00289 CPSase_L_chain: Carba 23.6 94 0.002 19.4 2.5 18 37-54 14-31 (110)
148 cd06153 YjgF_YER057c_UK114_lik 23.6 1.9E+02 0.0042 18.0 6.4 56 29-109 34-89 (114)
149 cd08587 PI-PLCXDc_like Catalyt 23.4 2.5E+02 0.0055 20.3 5.1 42 68-109 92-143 (288)
150 PLN02695 GDP-D-mannose-3',5'-e 23.3 2.8E+02 0.006 20.7 5.5 44 11-54 85-134 (370)
151 PF07993 NAD_binding_4: Male s 23.3 1.8E+02 0.0039 20.3 4.2 39 12-50 88-128 (249)
152 PLN02206 UDP-glucuronate decar 23.2 1.7E+02 0.0038 22.7 4.4 42 11-52 183-229 (442)
153 KOG1707 Predicted Ras related/ 23.1 91 0.002 25.7 2.9 39 10-48 169-208 (625)
154 COG0621 MiaB 2-methylthioadeni 23.1 3.6E+02 0.0077 21.4 6.1 90 6-102 152-250 (437)
155 PF05924 SAMP: SAMP Motif; In 23.0 29 0.00064 15.2 0.1 12 30-41 3-14 (20)
156 KOG3007 Mu-crystallin [Amino a 22.9 3.3E+02 0.0071 20.6 5.5 61 39-109 126-189 (333)
157 PF07287 DUF1446: Protein of u 22.7 3.6E+02 0.0078 20.7 6.1 43 31-79 54-96 (362)
158 PF07302 AroM: AroM protein; 22.6 2.2E+02 0.0048 20.3 4.5 33 29-63 68-100 (221)
159 PF01399 PCI: PCI domain; Int 22.3 1.7E+02 0.0038 16.9 3.9 47 32-80 42-88 (105)
160 PRK09987 dTDP-4-dehydrorhamnos 22.3 2.5E+02 0.0054 20.2 4.9 42 11-52 54-100 (299)
161 PTZ00333 triosephosphate isome 22.2 2.3E+02 0.0049 20.6 4.6 66 15-82 125-197 (255)
162 COG3981 Predicted acetyltransf 22.0 1.4E+02 0.0031 20.6 3.3 26 32-57 114-139 (174)
163 COG0161 BioA Adenosylmethionin 21.8 4.2E+02 0.009 21.1 7.5 72 8-80 168-248 (449)
164 TIGR02803 ExbD_1 TonB system t 21.4 1.6E+02 0.0034 18.4 3.3 20 35-54 99-118 (122)
165 PF04285 DUF444: Protein of un 21.2 4.2E+02 0.0091 20.9 6.6 78 14-106 338-418 (421)
166 PF13982 YbfN: YbfN-like lipop 21.1 87 0.0019 18.9 1.9 50 29-94 7-61 (89)
167 TIGR03824 FlgM_jcvi flagellar 21.1 84 0.0018 19.0 1.9 20 56-75 74-93 (95)
168 TIGR02171 Fb_sc_TIGR02171 Fibr 21.1 5.1E+02 0.011 22.7 6.9 60 34-93 807-874 (912)
169 TIGR03821 AblA_like_1 lysine-2 21.1 3.1E+02 0.0068 20.4 5.3 47 3-54 101-148 (321)
170 PLN02869 fatty aldehyde decarb 21.1 1.4E+02 0.003 24.7 3.5 39 20-58 365-406 (620)
171 TIGR00587 nfo apurinic endonuc 20.9 3.2E+02 0.007 19.5 9.2 57 33-92 86-143 (274)
172 PF06574 FAD_syn: FAD syntheta 20.9 1.4E+02 0.0031 19.8 3.1 62 34-103 22-99 (157)
173 PLN02166 dTDP-glucose 4,6-dehy 20.7 2.5E+02 0.0055 21.8 4.9 44 10-53 183-231 (436)
174 PF13580 SIS_2: SIS domain; PD 20.5 1.2E+02 0.0025 19.4 2.6 20 36-55 118-137 (138)
175 PRK13210 putative L-xylulose 5 20.5 3.2E+02 0.0069 19.2 6.6 50 31-81 90-139 (284)
176 PRK01060 endonuclease IV; Prov 20.4 3.2E+02 0.007 19.3 8.0 60 31-93 85-146 (281)
177 PRK00536 speE spermidine synth 20.3 2.2E+02 0.0048 20.8 4.2 57 36-106 57-116 (262)
178 COG0777 AccD Acetyl-CoA carbox 20.1 3.7E+02 0.008 20.1 5.2 57 1-58 110-167 (294)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=1.2e-35 Score=204.04 Aligned_cols=100 Identities=24% Similarity=0.519 Sum_probs=93.9
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
++++|++|+||||||||+|||.|..+ .++++|++||+|||++|++++++|||||+||||++|||++++|++|++++++|
T Consensus 81 ~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~ 159 (186)
T cd02904 81 GAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSY 159 (186)
T ss_pred CEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999654 45789999999999999999999999999999999999999999999999999
Q ss_pred hc-----CCCEEEEEecChHHHHHHH
Q 033840 81 AN-----DFKEVHFILFTDDIYNVWL 101 (110)
Q Consensus 81 ~~-----~l~~I~~v~~~~~~~~~f~ 101 (110)
++ ++++|+||+++++.++.|.
T Consensus 160 l~~~~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 160 FVSTMSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred HHhcCCCCccEEEEEECCHHHHHHhh
Confidence 84 4789999999999999985
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-33 Score=200.58 Aligned_cols=107 Identities=36% Similarity=0.561 Sum_probs=98.8
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCC---CCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFH---CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~---~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i 77 (110)
+|++|+||+||||||||+|||.|..+ ..+.+.|++||++||++|.++|++|||||+||||++|||++++|++|++++
T Consensus 150 ~a~iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv 229 (264)
T PRK04143 150 QAKITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTV 229 (264)
T ss_pred eEEEecCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999874 246789999999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCCEEEEEecChHHHHHHHHHHHHH
Q 033840 78 KEFAN---DFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 78 ~~~~~---~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
++|++ ...+|+|++++++.++.|++.+.+.
T Consensus 230 ~~fl~~~~~~~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 230 LSWLKENPSKLKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred HHHHHhCCCCCEEEEEEcCHHHHHHHHHHHHHh
Confidence 99996 2368999999999999999988753
No 3
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=1.3e-32 Score=186.25 Aligned_cols=104 Identities=42% Similarity=0.699 Sum_probs=98.4
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC-CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
++++|++|+|+|+||||++||.|..+. ++.+.|++||+++|+.|++++++|||||+||||++|||++++|++|++++++
T Consensus 57 ~~v~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~ 136 (165)
T cd02908 57 EAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVRE 136 (165)
T ss_pred CEEEeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998763 5789999999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCCEEEEEecChHHHHHHHHHH
Q 033840 80 FAN---DFKEVHFILFTDDIYNVWLKKA 104 (110)
Q Consensus 80 ~~~---~l~~I~~v~~~~~~~~~f~~~~ 104 (110)
|++ .+++|+||++++++++.|++.+
T Consensus 137 fl~~~~~l~~V~~v~~~~~~~~~f~~~l 164 (165)
T cd02908 137 FLEEHDAIERVIFVCFSEEDYEIYEKAL 164 (165)
T ss_pred HHhcCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 995 5889999999999999999875
No 4
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=1.4e-32 Score=187.63 Aligned_cols=106 Identities=26% Similarity=0.384 Sum_probs=99.8
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~ 78 (110)
++++|++|+|+||+|||+++|.|..+. .+.+.|++||++||+.|.+++++|||||+||||++|+|++++|++|+++++
T Consensus 63 ~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~ 142 (175)
T cd02907 63 EVVVTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVK 142 (175)
T ss_pred cEEEecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999864 467899999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCCEEEEEecChHHHHHHHHHHHH
Q 033840 79 EFAN----DFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 79 ~~~~----~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
+|+. .+++|+||+++++.+++|++.++.
T Consensus 143 ~fl~~~~~~l~~I~~v~~~~~~~~~~~~al~~ 174 (175)
T cd02907 143 EFLETKGSALKEIYLVDYDEQTVEAFEKALEV 174 (175)
T ss_pred HHHHhcCCCccEEEEEECCHHHHHHHHHHHhh
Confidence 9985 478999999999999999998765
No 5
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=7.9e-32 Score=184.10 Aligned_cols=108 Identities=37% Similarity=0.562 Sum_probs=101.1
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC-CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
++++|++|+|+||+|||+|+|.|+.+. .+.+.|++||+++|+.|++++++|||||+||||++|+|++++|++|++++++
T Consensus 64 ~~~~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~ 143 (177)
T PRK00431 64 EAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVRE 143 (177)
T ss_pred eEEEecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999998764 3578999999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCCEEEEEecChHHHHHHHHHHHHHh
Q 033840 80 FAN---DFKEVHFILFTDDIYNVWLKKAKELL 108 (110)
Q Consensus 80 ~~~---~l~~I~~v~~~~~~~~~f~~~~~~~~ 108 (110)
|++ ++++|+||+++++.++.|++.|++..
T Consensus 144 f~~~~~~l~~I~~v~~~~~~~~~f~~~l~~~~ 175 (177)
T PRK00431 144 FLTRHKSPEEVYFVCYDEEAYRLYERLLTQQG 175 (177)
T ss_pred HHhcCCCcCEEEEEECCHHHHHHHHHHHHHhh
Confidence 975 57899999999999999999998754
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=99.98 E-value=3.3e-32 Score=180.06 Aligned_cols=81 Identities=40% Similarity=0.667 Sum_probs=77.0
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCCC--cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~ 78 (110)
|+++|++|+||||||||+|||.|.+++. +++.|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus 58 ~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~ 137 (140)
T cd02905 58 EAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVR 137 (140)
T ss_pred cEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999998753 47899999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 033840 79 EFA 81 (110)
Q Consensus 79 ~~~ 81 (110)
+|+
T Consensus 138 ~~l 140 (140)
T cd02905 138 RFL 140 (140)
T ss_pred HhC
Confidence 985
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=170.93 Aligned_cols=108 Identities=32% Similarity=0.541 Sum_probs=102.0
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC-CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
||++|++|+|+++||||++||.|..+. ...+.|..||+++|++|.++|++|||||+||||++|+|++++|+++++++++
T Consensus 66 ~Avit~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~ 145 (179)
T COG2110 66 EAVITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKD 145 (179)
T ss_pred EEEEccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999875 4678999999999999999999999999999999999999999999999999
Q ss_pred Hhc--CCCEEEEEecChHHHHHHHHHHHHHh
Q 033840 80 FAN--DFKEVHFILFTDDIYNVWLKKAKELL 108 (110)
Q Consensus 80 ~~~--~l~~I~~v~~~~~~~~~f~~~~~~~~ 108 (110)
|+. ++++|.|++++++.++.|...+.+.+
T Consensus 146 ~~~~~~~~~v~~v~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 146 FLPEASIETVIFVVYGEETARVYEELLSTHL 176 (179)
T ss_pred hcccccccEEEEEecCchhHHHHHHHHhhhc
Confidence 996 68999999999999999999888765
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=99.96 E-value=7.6e-29 Score=165.20 Aligned_cols=78 Identities=40% Similarity=0.627 Sum_probs=73.6
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC---CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i 77 (110)
|+++|++|+|+||||||++||.|..+. ++.+.|++||+++|+.|.+++++|||||+||||++|||++++|+++++++
T Consensus 67 ~a~~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v 146 (147)
T cd02906 67 QAKITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTV 146 (147)
T ss_pred eEEEEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999998764 46789999999999999999999999999999999999999999999987
Q ss_pred H
Q 033840 78 K 78 (110)
Q Consensus 78 ~ 78 (110)
+
T Consensus 147 ~ 147 (147)
T cd02906 147 L 147 (147)
T ss_pred C
Confidence 5
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.95 E-value=5e-28 Score=159.52 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=74.3
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
++++|++|+|+||+|||+++|.|..+ +.+.|+++|++||+.|++++++|||||+||||++|||++++|++|++++++|
T Consensus 60 ~~~vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 60 SVIVTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred eEEEecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 58899999999999999999999865 6789999999999999999999999999999999999999999999999876
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=6.1e-26 Score=156.15 Aligned_cols=105 Identities=33% Similarity=0.569 Sum_probs=93.9
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCCCc-HHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNP-EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~~~-~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
+|++|++++||||+|||++||.|.+...+ ...|..||+|+|.+|.+++++|||||+|++|.+|||.+.+|++.++++++
T Consensus 84 ~ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~ 163 (200)
T KOG2633|consen 84 AAKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRV 163 (200)
T ss_pred eeEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHH
Confidence 57899999999999999999999987642 23699999999999999999999999999999999999999999999999
Q ss_pred Hhc-----CCCEEEEEecChHHHHHHHHHHH
Q 033840 80 FAN-----DFKEVHFILFTDDIYNVWLKKAK 105 (110)
Q Consensus 80 ~~~-----~l~~I~~v~~~~~~~~~f~~~~~ 105 (110)
|++ .++.+.|++++.+.+..|...+.
T Consensus 164 ~f~~~~d~~l~~~~f~~~d~e~~~~~l~~~~ 194 (200)
T KOG2633|consen 164 FFVKNKDSSLKTVPFLDYDSESYGAYLPEYA 194 (200)
T ss_pred HHhhCCCceEEEEEEeccCCchHHHHHhhhc
Confidence 996 35568899999999888876543
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.91 E-value=1.1e-23 Score=137.82 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=70.6
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i 77 (110)
++++|++|+|+||+|||+++|.+.. ..+.+.|++||+++|+.|++++++|||||+||||.+|+|++++|++|.+++
T Consensus 57 ~~~~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 57 EAVITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred eEEEEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998655 456789999999999999999999999999999999999999999999886
No 12
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.89 E-value=6.3e-23 Score=130.67 Aligned_cols=73 Identities=41% Similarity=0.629 Sum_probs=68.5
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
++++|++++|++++|||+++|.|.... .+.+.|+++|+++|+.|++++++||+||+||||.+|+|+++++++|
T Consensus 44 ~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 44 EVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp SEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred CeeeecCCCccccceEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 578999999999999999999997443 5789999999999999999999999999999999999999999986
No 13
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.86 E-value=1.9e-21 Score=133.84 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=72.3
Q ss_pred CeeEccCCCCC----------CceEEEecCCCCC-CCCCcHHHHHHHHHHHHHHHHhC--CCceEEecccccCCCccChH
Q 033840 1 MLKECRGFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQYPPD 67 (110)
Q Consensus 1 ~a~iT~~g~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~sIa~P~i~tG~~g~p~~ 67 (110)
+|++|++|+|+ +|||||++++.+. ....+.+.|++|++++|+.++++ +++|||||+||||.+|+|++
T Consensus 93 ~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~ 172 (186)
T cd02900 93 SATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPE 172 (186)
T ss_pred cEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHH
Confidence 68999999999 9999999876555 22245679999999999999987 89999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 033840 68 EAATIAISTVKEFA 81 (110)
Q Consensus 68 ~~a~~~~~~i~~~~ 81 (110)
++|++|+.+++.|.
T Consensus 173 ~aA~~m~~ai~~f~ 186 (186)
T cd02900 173 IAAKQMAFAIRLFN 186 (186)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 14
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.85 E-value=9.8e-23 Score=163.07 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=94.3
Q ss_pred cCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCc----------eEEecccccCCCccChHHHHHHHHH
Q 033840 6 RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQ----------YIAFPAISCGVSQYPPDEAATIAIS 75 (110)
Q Consensus 6 ~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~----------sIa~P~i~tG~~g~p~~~~a~~~~~ 75 (110)
++|+|+|++|||+|||.|.++.+ .+.|.+||+++|+.|++++++ |||||+|+||++|||.+++++++.+
T Consensus 592 ~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~ 670 (725)
T PRK13341 592 PAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSK 670 (725)
T ss_pred CCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHH
Confidence 99999999999999999987654 568999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhcC---CCEEEEEecChHHHHHHHHHHHHHh
Q 033840 76 TVKEFAND---FKEVHFILFTDDIYNVWLKKAKELL 108 (110)
Q Consensus 76 ~i~~~~~~---l~~I~~v~~~~~~~~~f~~~~~~~~ 108 (110)
++.+|++. ..++.++.++++.+..|.+.+.++|
T Consensus 671 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 671 LIKRWLAQGPDYRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 99999963 4567799999999999999998876
No 15
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.83 E-value=2.8e-20 Score=120.88 Aligned_cols=73 Identities=33% Similarity=0.493 Sum_probs=68.3
Q ss_pred CeeEccCCCCCCceEEEecCCCCCCC-CCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 1 MLKECRGFKLPVSHVIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
++++|+++++++++|||+++|.|.+. ..+.+.|+++|+++|+.|++++++||+||.||||.+|+|.+++++++
T Consensus 60 ~~~~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 60 TAVVTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred cEEEecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 47899999999999999999999986 36788999999999999999999999999999999999999999874
No 16
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.79 E-value=1e-18 Score=115.46 Aligned_cols=77 Identities=32% Similarity=0.592 Sum_probs=71.8
Q ss_pred CeeEccCCCCC-CceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCcc------ChHHHHH
Q 033840 1 MLKECRGFKLP-VSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAAT 71 (110)
Q Consensus 1 ~a~iT~~g~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~------p~~~~a~ 71 (110)
++++|++++++ +++|||+++|.|.... .+.+.|+++|+++|..|.+++++|||||.||||.+|+ |.+.+++
T Consensus 61 ~~~~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~ 140 (147)
T cd02749 61 EAVLTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIK 140 (147)
T ss_pred CEEECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHH
Confidence 57899999999 9999999999998864 3678999999999999999999999999999999999 9999999
Q ss_pred HHHHHH
Q 033840 72 IAISTV 77 (110)
Q Consensus 72 ~~~~~i 77 (110)
+|++++
T Consensus 141 i~~~~~ 146 (147)
T cd02749 141 IALEAA 146 (147)
T ss_pred HHHHHh
Confidence 999876
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.66 E-value=6.8e-16 Score=101.55 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=70.3
Q ss_pred eeEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 2 LKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 2 a~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
++++.++++++++|+|+++|.|.......+.|+++++++++.|++++++||+||.||||.+|+|.+++++++.+.+.+
T Consensus 62 ~~~~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 62 AVLERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred EEEecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 456778888999999999998877556778999999999999999999999999999999999999999999887643
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-10 Score=75.59 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=68.7
Q ss_pred EccCCCCCCceEEEecCCCCCCCCC-cHHHHHHHHHHHHHHHHhCCC-ceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 4 ECRGFKLPVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 4 iT~~g~L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~~~-~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.|.+++.+-++|+|..+- |+.+.. +.+.|++++++..+.+++++. .||+||.||||.+|+|-+++.+++.+..
T Consensus 67 ~~~~~~~~~~~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~~---- 141 (154)
T PHA02595 67 WEKYVGGHKAYCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEAT---- 141 (154)
T ss_pred EEeeccCCCEEEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHhc----
Confidence 456677778999999876 766543 567799999999999999998 9999999999999999999999986653
Q ss_pred cCCCEEEEEecCh
Q 033840 82 NDFKEVHFILFTD 94 (110)
Q Consensus 82 ~~l~~I~~v~~~~ 94 (110)
+.+ +|.++.+++
T Consensus 142 ~~~-~i~Vy~~~~ 153 (154)
T PHA02595 142 PDI-DIVVVEYEK 153 (154)
T ss_pred CCC-cEEEEEecC
Confidence 344 466666653
No 19
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=98.80 E-value=5.3e-08 Score=70.55 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=72.8
Q ss_pred EEEecCCCCCC----C-C---CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHH---HHhcC
Q 033840 15 VIHTVGPVFNF----H-C---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK---EFAND 83 (110)
Q Consensus 15 IiH~v~P~~~~----~-~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~---~~~~~ 83 (110)
+|-++.|++.. . . +..+.+++-++.+|..|..+|.+++.+.++|||.++.|+.++|+.+.+.+. +|...
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~~~ef~g~ 243 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSPGGIFKGR 243 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhccCccccCc
Confidence 67777787652 1 1 234789999999999999999999999999999999999999999999997 67778
Q ss_pred CCEEEEEecChH----HHHHHH
Q 033840 84 FKEVHFILFTDD----IYNVWL 101 (110)
Q Consensus 84 l~~I~~v~~~~~----~~~~f~ 101 (110)
++.|.|.+.+.. .+++|+
T Consensus 244 F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 244 IKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred eeEEEEEEeCCCCCCcHHhHhh
Confidence 999999988743 567765
No 20
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.29 E-value=2.7e-06 Score=61.78 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=49.2
Q ss_pred CCCCceEEEecCC------CCCCCC---CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 9 KLPVSHVIHTVGP------VFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 9 ~L~~k~IiH~v~P------~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
+-.++||+|+.+. .|.... ..-+.+-+++.|++..+. ..+.+|.+|.||||.+|+|++.+|+.|.-+++-
T Consensus 134 ~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sAk~M~fAl~l 212 (280)
T PF14519_consen 134 NWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISAKQMAFALRL 212 (280)
T ss_dssp -TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHHHHHHHHHHH
T ss_pred ccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHHHHHHHHHHH
Confidence 3468999999652 233321 134567788889887764 579999999999999999999999999999988
Q ss_pred Hh
Q 033840 80 FA 81 (110)
Q Consensus 80 ~~ 81 (110)
|.
T Consensus 213 ~~ 214 (280)
T PF14519_consen 213 YN 214 (280)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 21
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=5.1e-05 Score=53.62 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH---hcCCCEEEEEecChH--HHHHHHHHH
Q 033840 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF---ANDFKEVHFILFTDD--IYNVWLKKA 104 (110)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~---~~~l~~I~~v~~~~~--~~~~f~~~~ 104 (110)
.+.|..-++++|.+|..++.+.+.+-+.|||+++-+|..+|+++.+.+.+- +..++.|.|-+.|.. .+.+|++++
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 367888899999999999999999999999999999999999999888764 457899999887744 688999887
Q ss_pred HHH
Q 033840 105 KEL 107 (110)
Q Consensus 105 ~~~ 107 (110)
+.+
T Consensus 279 e~f 281 (285)
T COG4295 279 EYF 281 (285)
T ss_pred Hhh
Confidence 654
No 22
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.98 E-value=0.13 Score=40.67 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=76.2
Q ss_pred CeeEccCCCCC-CceEEEecCCCCC-CCC-CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccCh-----HHHHHH
Q 033840 1 MLKECRGFKLP-VSHVIHTVGPVFN-FHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP-----DEAATI 72 (110)
Q Consensus 1 ~a~iT~~g~L~-~k~IiH~v~P~~~-~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~-----~~~a~~ 72 (110)
+..||.--||. +--|+|.|.-.-. .+. .+..-+-..+||+|+.|-++|+.+|.+|.+-+....-.. -.=|+.
T Consensus 376 d~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~~Rael 455 (510)
T PF10154_consen 376 DFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCLKRAEL 455 (510)
T ss_pred ceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHHHHHHH
Confidence 35678888886 4568898854322 222 345667789999999999999999999999887543222 123555
Q ss_pred HHHHHHHHhc--------CCCEEEEEecC---hHHHHHHHHHHHHHh
Q 033840 73 AISTVKEFAN--------DFKEVHFILFT---DDIYNVWLKKAKELL 108 (110)
Q Consensus 73 ~~~~i~~~~~--------~l~~I~~v~~~---~~~~~~f~~~~~~~~ 108 (110)
.++.++-|+- ..+.|.|++-+ ++.+..+.+.+...|
T Consensus 456 v~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~f 502 (510)
T PF10154_consen 456 VFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIF 502 (510)
T ss_pred HHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhh
Confidence 6677777761 24789998755 457888888888776
No 23
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=95.89 E-value=0.086 Score=35.35 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=49.5
Q ss_pred ceEEEecCCCCCCCC----CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHH
Q 033840 13 SHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (110)
Q Consensus 13 k~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i 77 (110)
.+|...+++...+.. .+...|++|+..+-..|.. +-.||.||-||+|.+|.|=+..-+++-+.+
T Consensus 82 ~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~l 149 (152)
T cd03331 82 DWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKYL 149 (152)
T ss_pred eEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHHh
Confidence 567788887755442 3678899999888877765 558999999999999999988877765443
No 24
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=85.11 E-value=2.7 Score=31.65 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCceEEEecCCCCCCCCC-c---HHHHHHHHHHHHHHHHhCC-CceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCN-P---EDILRSAYKNCLSVGKANN-IQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~-~---~~~L~~~~~~~L~~a~~~~-~~sIa~ 54 (110)
+|+.|+|++.|.-....+ + .+--.+...|+|+.|.+-+ .+.|-+
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 499999999997554332 2 2333456669999998877 776666
No 25
>PHA00684 hypothetical protein
Probab=84.91 E-value=4.3 Score=26.43 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHH
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST 76 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~ 76 (110)
..+.++..+..=+..|.++--...-+..||||+.||..++-|.....+
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a 101 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDA 101 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999998876533
No 26
>PLN02214 cinnamoyl-CoA reductase
Probab=83.86 E-value=2.7 Score=31.12 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=28.2
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.++.|||+++|.........+.--....+.|+.|.+.+.+.+-+
T Consensus 81 ~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 81 GCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 37899999998643211111122345678888898888876665
No 27
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=83.14 E-value=4.9 Score=29.17 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCceEEEecCCCCCCCC-Cc---HHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHC-NP---EDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~~---~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.|+.|||+++|.-..+. .. .+.=-+..+|+|+.|.+.+++.+-+
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 48999999987533321 11 2333467789999999999987755
No 28
>CHL00194 ycf39 Ycf39; Provisional
Probab=81.53 E-value=18 Score=26.35 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.++.|||++++.+.......+.=.....+.++.|.+.|++.+-+
T Consensus 64 g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 64 GVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 37899999876654322211222355678999999999987765
No 29
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=79.74 E-value=3.1 Score=25.90 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=33.2
Q ss_pred ceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecc
Q 033840 13 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 56 (110)
Q Consensus 13 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 56 (110)
-.|.|+..|.|-.+.- .=+..+..+|+.|.+.|++-|.+++
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 4688999998877653 4455678899999999999998876
No 30
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=78.03 E-value=23 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
+++.|||++++.+.......+.-.....++++.|.+.|.+.+.+
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 58999999887553322222222345678999999999887665
No 31
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.37 E-value=8.9 Score=27.49 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+.++++++.|.+.|++.+.+=++|+-++.=|++++...| +-+.+++
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm-~L~~~~l 82 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM-FLIADYL 82 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 4567788889999999999999999999999999988665 3443333
No 32
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=72.53 E-value=32 Score=26.80 Aligned_cols=105 Identities=9% Similarity=0.046 Sum_probs=59.1
Q ss_pred eEccC-CCCCCceEEEecCC--CCCC------CC------CcHHHHHHHHHHHHHHHHhCCC--ceEEecccccCCCccC
Q 033840 3 KECRG-FKLPVSHVIHTVGP--VFNF------HC------NPEDILRSAYKNCLSVGKANNI--QYIAFPAISCGVSQYP 65 (110)
Q Consensus 3 ~iT~~-g~L~~k~IiH~v~P--~~~~------~~------~~~~~L~~~~~~~L~~a~~~~~--~sIa~P~i~tG~~g~p 65 (110)
|+|.. +.++.|+.+=+.|- .+.+ .. ++...|++-+.++++.|+...- .-+.|-..|.|-.|+.
T Consensus 90 V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVE 169 (405)
T COG1252 90 VTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVE 169 (405)
T ss_pred EEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHH
Confidence 44555 67999999988873 2222 11 1345677777788899875443 4566777999988864
Q ss_pred hHHHHHHHHHHHHH-HhcCCC--EEEEEecChHHHHHHHHHHHHH
Q 033840 66 PDEAATIAISTVKE-FANDFK--EVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 66 ~~~~a~~~~~~i~~-~~~~l~--~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
..-.-.-.+..+.+ |..... +|.+|--.+.....|-+.+.++
T Consensus 170 lAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~ 214 (405)
T COG1252 170 LAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKY 214 (405)
T ss_pred HHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHH
Confidence 32222222222222 222222 5666655555665555554443
No 33
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=71.02 E-value=9.5 Score=28.22 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=29.6
Q ss_pred CceEEEecCCCCCCCC--CcH---HHHHHHHHHHHHHHHhCCCceEEecc
Q 033840 12 VSHVIHTVGPVFNFHC--NPE---DILRSAYKNCLSVGKANNIQYIAFPA 56 (110)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~---~~L~~~~~~~L~~a~~~~~~sIa~P~ 56 (110)
++.|||.++....... ... +.=-....|+|+.|.+.|++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999986432211 111 22234567999999999998887754
No 34
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.64 E-value=9.5 Score=25.06 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.6
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
+|+.|||+++|.+. + ...+++.++.+.+.|.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~------~--~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D--VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTT------H--HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhcc------c--cccccccccccccccccccee
Confidence 58999999988765 1 677888899999999887766
No 35
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=69.60 E-value=20 Score=27.29 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEe--cccccCC-CccChHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV-SQYPPDEAATIAISTV 77 (110)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~sIa~--P~i~tG~-~g~p~~~~a~~~~~~i 77 (110)
...+.+.+++.++.+...|++.|.+ |++|+|. .+++.+.+.+++ +.+
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al-~~a 190 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISAL-TVA 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHH-HHH
Confidence 3567778888888899999999999 9999996 567777776665 444
No 36
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=68.67 E-value=13 Score=26.53 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+.++++++.|.+.|++.+.+=++|+-++.=|++++.-.| +-+.+++
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l 75 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKL 75 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHH
Confidence 3467788888999999999999999999999999887655 4444443
No 37
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=68.62 E-value=24 Score=21.46 Aligned_cols=26 Identities=8% Similarity=-0.096 Sum_probs=19.6
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++.+.+.|.+.+..+.+...++|+
T Consensus 49 Vv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 49 ILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 44566666777788888888888885
No 38
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=68.31 E-value=13 Score=26.37 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+.+++++..|.+.|++.+.+=++|+.++.=|++++.-.| +-+.+++
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm-~l~~~~l 76 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM-ELFRDVL 76 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH-HHHHHHH
Confidence 3456778888999999999999999999999999887554 4444443
No 39
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=67.27 E-value=27 Score=25.06 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCceEEEecCCCCCCCCCcH-HHH---HHHHHHHHHHHHhC-CCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPE-DIL---RSAYKNCLSVGKAN-NIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~-~~L---~~~~~~~L~~a~~~-~~~sIa~ 54 (110)
.++.|||.++|......... +.+ -....+.|+.|.+. +.+.+.+
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 76 GCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred CCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 36899999998643211211 222 24556788887776 7777665
No 40
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=65.16 E-value=17 Score=26.13 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.++++++.|.+.|++.+++=++|+-++.=|++++...| +-+.+++
T Consensus 35 ~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm-~L~~~~l 80 (233)
T PRK14833 35 KTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM-KLLKKYL 80 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH-HHHHHHH
Confidence 456678888999999999999999999999999887664 4444443
No 41
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=64.94 E-value=17 Score=26.27 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+.+.++++.|.+.|++.|.+=++|+-++.=|++++...| +-+.+++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm-~L~~~~l 84 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIF-GLLVEFI 84 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 3456778888999999999999999999999998887554 4444444
No 42
>PLN02778 3,5-epimerase/4-reductase
Probab=64.10 E-value=16 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=28.0
Q ss_pred CCceEEEecCCCCCCC---C--CcHHHH---HHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFH---C--NPEDIL---RSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~---~--~~~~~L---~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.+++|||++++.-... . +..+.+ .....+.|+.|.+.|++-+-+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5799999998753211 0 112222 334568899999999876554
No 43
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=63.99 E-value=19 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
.+.+.+++..|.+.|++.|++=+++++++.=|.+++.-.|
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm 83 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLM 83 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHH
Confidence 3456678888999999999999999999999998777443
No 44
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=63.61 E-value=18 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
.+.++++++.|.+.|++.|.+=++|+-++.=|++++...|
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm 72 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM 72 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH
Confidence 3466778888999999999999999999999999887665
No 45
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=63.00 E-value=18 Score=30.04 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCceEEecccccCC---CccChHHHHHHHHHHH
Q 033840 28 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV---SQYPPDEAATIAISTV 77 (110)
Q Consensus 28 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~---~g~p~~~~a~~~~~~i 77 (110)
++.+.+..|+..+=.++++-.+.+++|...|-|. .|++||.-.|.++|-.
T Consensus 516 ~~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA 568 (764)
T KOG3716|consen 516 ECLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLA 568 (764)
T ss_pred hHHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHH
Confidence 4667899999998889999999999999999994 7899999999998875
No 46
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=62.33 E-value=20 Score=26.04 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
+.++++++.|.+.|++.|.+=++|+-++.=|++++...|
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 456678888999999999999999999999999987665
No 47
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=62.24 E-value=22 Score=25.11 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.++++++.|.+.|++.|.+=++++.+++=|++++...| +-+.+++
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~l 70 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM-DLFERYL 70 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH-HHHHHHH
Confidence 345677888889999999999999999999999987765 4444433
No 48
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=62.20 E-value=19 Score=26.08 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 72 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~ 72 (110)
.+.+++++..|.+.|++.|.+=+++++++.=|.+++.-.
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 345678888899999999999999999999998887644
No 49
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=61.87 E-value=20 Score=26.05 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
.+.++++++.|.+.|++.+.+=++|+-++.=|++++...| +-+.++
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm-~L~~~~ 93 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM-LLFERL 93 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHH
Confidence 3456788888999999999999999999999999887665 344433
No 50
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=61.86 E-value=21 Score=25.78 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
.+.+.++++.|.+.|++.|.+=++|+-++.=|++++.-.| +-+.++
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm-~L~~~~ 84 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM-RLLRAY 84 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH-HHHHHH
Confidence 3456678888999999999999999999999999887665 333333
No 51
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=60.80 E-value=36 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCceEEEecCCCCCCCCCc-HHHHH---HHHHHHHHHHHhC-CCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKAN-NIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~-~~~sIa~ 54 (110)
.++.|||+++|......+. .+.+. ....++|+.|.+. +++.|-+
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~ 125 (322)
T PLN02986 77 GCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVIL 125 (322)
T ss_pred CCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 3799999999854321111 12222 3456788888775 6776666
No 52
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=60.62 E-value=22 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+.+.++++.|.+.|++.|.+=++|+-++.=|++++...| +-+.+++
T Consensus 40 ~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm-~l~~~~l 86 (242)
T PRK14838 40 AETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM-SLLLDSI 86 (242)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH-HHHHHHH
Confidence 3456678888999999999999999999999998887554 4444443
No 53
>PTZ00325 malate dehydrogenase; Provisional
Probab=59.12 E-value=40 Score=25.26 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=34.9
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHH---HHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sIa~ 54 (110)
.|+-|+|++|+.-..+..-.+.|.. .++++++...+++.+.+-+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999865543344567777 8899999999999988877
No 54
>PRK06199 ornithine cyclodeaminase; Validated
Probab=59.08 E-value=64 Score=24.73 Aligned_cols=71 Identities=6% Similarity=0.011 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHH--HHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCLS--VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 30 ~~~L~~~~~~~L~--~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
...+|.+-..+|- .....+.++++ .||||..+ +..++.+......+++|++...+.+.-+.|.+.+.+.
T Consensus 134 lTa~RTaA~salaa~~LAr~da~~l~--iiG~G~QA-------~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~ 204 (379)
T PRK06199 134 LSAYRTGAVPGVGARHLARKDSKVVG--LLGPGVMG-------KTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAET 204 (379)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCEEE--EECCcHHH-------HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh
Confidence 3567777776663 33456777777 59998653 3344444444446899999999999999999998876
Q ss_pred hc
Q 033840 108 LQ 109 (110)
Q Consensus 108 ~~ 109 (110)
++
T Consensus 205 ~~ 206 (379)
T PRK06199 205 YP 206 (379)
T ss_pred cC
Confidence 53
No 55
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=58.87 E-value=74 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
...+.++++.|.+.|++.|.+=++|+.++.=|++++.-.|
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 3456788889999999999999999999999998876544
No 56
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=58.48 E-value=28 Score=24.94 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 35 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.+.++++.|.+.|++.|.+=++|+-++.=|++++.-.| +-+.+++
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm-~l~~~~l 69 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALM-ELFVWAL 69 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHH-HHHHHHH
Confidence 456678888999999999999999999998888877544 4444443
No 57
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=58.34 E-value=31 Score=25.03 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
.+.+.+++..|.+.|++.|.+=++++-++.=|++++...|
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm 83 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLF 83 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHH
Confidence 3456677888999999999999999999999998887654
No 58
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=57.99 E-value=28 Score=25.36 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
.+.+.++++.|.+.|++.|.+=++++.++.=|.+++...|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 4556778888999999999999999999999998887665
No 59
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=57.43 E-value=91 Score=24.39 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCCceEEe-cccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 033840 32 ILRSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILF 92 (110)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~sIa~-P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~ 92 (110)
.-.+.+++.|+.|.+.|+..|.| |-- .....+.+++-+.+.+.+.+-+..-..|.+++.
T Consensus 215 kSv~~~~~eL~rA~~LGa~~VV~HPGs--~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLE 274 (413)
T PTZ00372 215 KSYDAFLDDLQRCEQLGIKLYNFHPGS--TVGQCSKEEGIKNIADCINKAHEETKSVIIVLE 274 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCc--CCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEe
Confidence 34567889999999999999999 422 223445566777777777664432223555544
No 60
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=57.30 E-value=42 Score=20.44 Aligned_cols=26 Identities=4% Similarity=-0.134 Sum_probs=17.5
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++++.+.+.+.+..+.+.+.++|+
T Consensus 52 vvk~~vyl~d~~~~~~~~~~~~~~f~ 77 (105)
T cd06150 52 ILSATIWLADMADFAAMNAVWDAWVP 77 (105)
T ss_pred EEEEEEEEccHHHHHHHHHHHHHHcC
Confidence 34555566666777777777777774
No 61
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=56.67 E-value=47 Score=20.78 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=25.2
Q ss_pred eeEccCCCCCCceEEEecCCCCCC-CCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 2 LKECRGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 2 a~iT~~g~L~~k~IiH~v~P~~~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
++.|.+++|.|+| +..+.... .... ..-.+...++++.+.+.+...|.|
T Consensus 9 ~~~t~~Cnl~C~y---C~~~~~~~~~~~~-~~~~~~~~~ii~~~~~~~~~~i~l 58 (139)
T PF13353_consen 9 VLFTNGCNLRCKY---CFNSEIWKFKRGK-ELSEEIIEEIIEELKNYGIKGIVL 58 (139)
T ss_dssp EEEEC--SB--TT----TTCCCS-TT-SE-EC-HHHHHHHCHHHCCCCCCEEEE
T ss_pred EEEcCcccccCcC---cCCcccCcccccc-cccchhhhhhhhHHhcCCceEEEE
Confidence 3558889999996 33332221 1111 111556667777777789988887
No 62
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=56.66 E-value=31 Score=25.38 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
.+.+.++++.|.+.|++.|.+=++++-++.=|++++...|
T Consensus 71 ~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm 110 (275)
T PRK14835 71 VQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM 110 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH
Confidence 3456678888999999999999999999999988887664
No 63
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=56.47 E-value=28 Score=26.34 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
...++++++.|.+.|++.+.+=++|+-++.=|++++.-.|
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3467788999999999999999999999999999987655
No 64
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=56.39 E-value=47 Score=20.74 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=17.1
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++.+-+.+.+.+..+.+.+.++|+
T Consensus 67 Vvk~~vyl~d~~~~~~~~~~~~~~f~ 92 (119)
T cd06154 67 VVRTRMYVTDIADFEAVGRAHGEVFG 92 (119)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 34555555666677777777777775
No 65
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=56.03 E-value=27 Score=25.67 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
-..+...|+.|.+.|++.|++=|+++-+++=|++++-..|
T Consensus 66 f~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 66 FEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 3456678999999999999999999999999998887665
No 66
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=55.30 E-value=13 Score=27.85 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=17.8
Q ss_pred EecccccCCCccChHHHHHHHHHHHHH
Q 033840 53 AFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 53 a~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
-+|.||.|.+.-++..+.+++..++..
T Consensus 14 ~mP~iGlGTw~~~~~~~~~aV~~Al~~ 40 (300)
T KOG1577|consen 14 KMPIIGLGTWQSPPGQVAEAVKAAIKA 40 (300)
T ss_pred ccceeeeEecccChhhHHHHHHHHHHh
Confidence 357777777776666666666666644
No 67
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.65 E-value=43 Score=23.68 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=32.1
Q ss_pred ceEEEecCCCCCCCCC------cHHHHHHHHHHHHHHHHhCCCceEEec
Q 033840 13 SHVIHTVGPVFNFHCN------PEDILRSAYKNCLSVGKANNIQYIAFP 55 (110)
Q Consensus 13 k~IiH~v~P~~~~~~~------~~~~L~~~~~~~L~~a~~~~~~sIa~P 55 (110)
+.|||+++..+..... ....-....+++|+.|.+.+.+-+-++
T Consensus 66 d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ 114 (314)
T COG0451 66 DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFA 114 (314)
T ss_pred CEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 7899999887654331 124555667799999999999999993
No 68
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=52.47 E-value=32 Score=24.42 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=27.9
Q ss_pred CCceEEEecCCCC----CCCCCc--HHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVF----NFHCNP--EDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~----~~~~~~--~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
..+.|||++++.- ...+.. .+.-.....+.|+.|.+.+++.+-+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 4689999998631 111111 1222345778999999999876666
No 69
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=52.25 E-value=56 Score=20.36 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=18.8
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++.+.+.+.+.+..+.+.++++|+
T Consensus 66 vv~~~~yl~d~~~~~~~~~v~~~~f~ 91 (121)
T PF01042_consen 66 VVKVTVYLTDMSDFPAVNEVWKEFFP 91 (121)
T ss_dssp EEEEEEEESSGGGHHHHHHHHHHHST
T ss_pred EeeeeehhhhhhhhHHHHHHHHHHhc
Confidence 44566666676778888888888875
No 70
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.79 E-value=38 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHH
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~ 73 (110)
+.-.+.+.++++.|.+.|++.+.+=++++.++.=|.+++...|
T Consensus 49 ~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 49 KAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 4566678899999999999999999999999999998887776
No 71
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=51.44 E-value=11 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEeccccc
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISC 59 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~t 59 (110)
-.+..||+.....|.++|+ .+|+..|
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw---~iPS~~t 74 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGW---PIPSEKT 74 (108)
T ss_dssp --HHHHHHHHHHHHHHHT--------HHH
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCCHHH
Confidence 3689999999999999997 5666544
No 72
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=51.15 E-value=62 Score=20.60 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=18.9
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++++.+.|-+.+..|.+...++|+
T Consensus 73 vv~~~iyl~d~~~~~~~~~~~~~~f~ 98 (127)
T TIGR03610 73 VTFNHIFIRDWADYAAINEVYAEYFP 98 (127)
T ss_pred EEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 44566666677788888888888875
No 73
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=50.45 E-value=49 Score=19.22 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred eEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecc
Q 033840 14 HVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 56 (110)
Q Consensus 14 ~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 56 (110)
-+.|+..|.-..+. -.-.+.++.+|+.|.++|.+-++.+.
T Consensus 24 ~i~hT~V~~~~rGq---Gia~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 24 VITHTEVPPELRGQ---GIAKKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp EEEEEEE-CSSSTT---THHHHHHHHHHHHHHHTT-EEEETSH
T ss_pred EEEEEEECccccCC---cHHHHHHHHHHHHHHHCCCEEEEECH
Confidence 47788766433322 25666788899999999999887754
No 74
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=49.82 E-value=65 Score=20.45 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhc-------CCCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 67 DEAATIAISTVKEFAN-------DFKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 67 ~~~a~~~~~~i~~~~~-------~l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
++.++.+++-++..++ .+-++.+.+.+.+.+..+.+...++|+
T Consensus 47 ~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~~~f~ 96 (129)
T PRK11401 47 QDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFD 96 (129)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHhC
Confidence 3444444444444442 334566666677778888888888775
No 75
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=49.62 E-value=38 Score=24.64 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
+.-.+.+++++..|.+.|++.+.+=++++.++.=|.+++...| +-+.++
T Consensus 41 ~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~ 89 (253)
T PRK14836 41 RAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALM-ELFLKA 89 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHH-HHHHHH
Confidence 4566688899999999999999999999999998888876554 333333
No 76
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=49.55 E-value=45 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCceEEecccccC
Q 033840 35 SAYKNCLSVGKANNIQYIAFPAISCG 60 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~P~i~tG 60 (110)
..++.+++...++|+++||+..+.+-
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~~fS~ 159 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSLLFSY 159 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEECccCC
Confidence 45666777778899999999766554
No 77
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=49.16 E-value=97 Score=23.35 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHH
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
..|++.++.++..-.+.| +.|-+=.|.+|.+.| .++++.++-+...+|.+.++++..++.=++..++
T Consensus 117 ~~l~~~i~~ai~~L~~~g-~pvrIlDIAaG~GRY--------vlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 117 VHLEELIRQAIARLREQG-RPVRILDIAAGHGRY--------VLDALEKHPERPDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred HHHHHHHHHHHHHHHhcC-CceEEEEeccCCcHH--------HHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 567777777777665555 667777788887766 5667766656667999999998877666555543
No 78
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=48.95 E-value=64 Score=20.13 Aligned_cols=25 Identities=4% Similarity=-0.069 Sum_probs=15.8
Q ss_pred CEEEEEecChHHHHHHHHHHHHHhc
Q 033840 85 KEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 85 ~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
-++.+.+.+.+.+..+.+...++|+
T Consensus 72 v~~~vyv~~~~~~~~~~~~~~~~f~ 96 (124)
T TIGR00004 72 VKTTVFLTDLNDFAEVNEVYGQYFD 96 (124)
T ss_pred EEEEEEEeChHHHHHHHHHHHHHcC
Confidence 3444455566677777777777764
No 79
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=48.01 E-value=64 Score=19.82 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHH
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~ 78 (110)
..+.++++..++.+.+.+.+.+++++..- .-+...+..++.+.+.+.
T Consensus 67 ~~~~~r~a~~~~~~~l~~~~~~~v~i~l~---~~~~~~~~~~~~~~~g~~ 113 (126)
T PF02789_consen 67 TAESLRKAGAAAARALKKLKVKSVAIDLP---IDGENSDEAAEAAAEGAL 113 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-SEEEEEGC---SSBTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCceEEEEeCc---ccccCcHHHHHHHHHHHH
Confidence 46899999999999999999999998665 333333477777766654
No 80
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.92 E-value=94 Score=21.72 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+...+.++++++.|.+.|.+.|.++. |......+.++.-+.+.+.+++..
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~ 129 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLA-GKRPAGVSPEEARATLVENLRYAA 129 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567888999999999999998653 222344556666666666666654
No 81
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=47.58 E-value=85 Score=21.28 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHHHHHHHHHH
Q 033840 67 DEAATIAISTVKEFAN--DFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 67 ~~~a~~~~~~i~~~~~--~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
+.+|++|+.+.|..=+ ..+.|.+++.+.+.+......|++.
T Consensus 11 ~~~Akim~~aARTAPK~kGiDdIv~~lve~Ee~e~iA~rMEel 53 (182)
T COG4739 11 ETAAKIMAEAARTAPKSKGIDDIVIVLVEGEEMEKIAARMEEL 53 (182)
T ss_pred HHHHHHHHHHhhcCCccCCccceEEEEeCHHHHHHHHHHHHHH
Confidence 5667777777666543 5789999999988877776666654
No 82
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.77 E-value=1.1e+02 Score=22.18 Aligned_cols=66 Identities=15% Similarity=0.355 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEE---EecChHHHHHHHHHHHHHhc
Q 033840 39 NCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHF---ILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 39 ~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~---v~~~~~~~~~f~~~~~~~~~ 109 (110)
++|+.-.++|++.|.+-.+.. +-|..-+ -+.+++.+|...++++.+ ++...+.|..+.+.++...+
T Consensus 64 ~aL~klk~~gy~eviiQ~lhi-IpG~EyE----klvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~p 132 (265)
T COG4822 64 QALNKLKDQGYEEVIIQPLHI-IPGIEYE----KLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIP 132 (265)
T ss_pred HHHHHHHHccchheeeeeeee-cCchHHH----HHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcC
Confidence 578888889999999866543 2233333 235778888888887776 77788889999998887765
No 83
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=46.51 E-value=61 Score=19.18 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=16.6
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 84 FKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 84 l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+-++.+.+.+.+.+..+.+..+++|+
T Consensus 55 iv~~~~yv~~~~~~~~~~~~~~~~~~ 80 (107)
T cd00448 55 VVKVTVYLTDMADFAAVNEVYDEFFG 80 (107)
T ss_pred EEEEEEEEecHHHHHHHHHHHHHHhC
Confidence 34455555556677777777777764
No 84
>PLN02650 dihydroflavonol-4-reductase
Probab=45.92 E-value=79 Score=23.20 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCCCCCCc-HHHH---HHHHHHHHHHHHhCC-CceEEec
Q 033840 11 PVSHVIHTVGPVFNFHCNP-EDIL---RSAYKNCLSVGKANN-IQYIAFP 55 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~-~~~L---~~~~~~~L~~a~~~~-~~sIa~P 55 (110)
.++.|||.+++.-...... ...+ -....++|+.|.+.+ .+.+.+.
T Consensus 77 ~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~ 126 (351)
T PLN02650 77 GCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFT 126 (351)
T ss_pred CCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 3689999998742211111 1222 235668888888876 6666663
No 85
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=44.31 E-value=1.6e+02 Score=23.50 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred CCCCCceEEEecCCCCCC--------CC------CcHHHHHHHHHHHHHHHHhC------CCceEEecccccCCCccCh-
Q 033840 8 FKLPVSHVIHTVGPVFNF--------HC------NPEDILRSAYKNCLSVGKAN------NIQYIAFPAISCGVSQYPP- 66 (110)
Q Consensus 8 g~L~~k~IiH~v~P~~~~--------~~------~~~~~L~~~~~~~L~~a~~~------~~~sIa~P~i~tG~~g~p~- 66 (110)
..++.||.+-++|-.=+. +. ...+.+|+-+-.+|+.|+.. .-+.+.|-..|-|-.|...
T Consensus 155 ~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA 234 (491)
T KOG2495|consen 155 FVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA 234 (491)
T ss_pred eeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence 356789999888743221 10 24578888888999998763 4578888889999888754
Q ss_pred HHHHHHHHHHHHHHhcCC-CEEEEEecCh--HHHHHHHHHHHHHh
Q 033840 67 DEAATIAISTVKEFANDF-KEVHFILFTD--DIYNVWLKKAKELL 108 (110)
Q Consensus 67 ~~~a~~~~~~i~~~~~~l-~~I~~v~~~~--~~~~~f~~~~~~~~ 108 (110)
.+.+..+.+-++++...+ ++|.+.+.+. .+...|.+.+.+|-
T Consensus 235 aEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~ya 279 (491)
T KOG2495|consen 235 AELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYA 279 (491)
T ss_pred HHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHH
Confidence 344555556666666554 3455555443 47888988887764
No 86
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.00 E-value=1.5e+02 Score=22.81 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=39.4
Q ss_pred eEEEec--CCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceE-EecccccCCCccChHHHHHHH
Q 033840 14 HVIHTV--GPVFNFHCNPEDILRSAYKNCLSVGKANNIQYI-AFPAISCGVSQYPPDEAATIA 73 (110)
Q Consensus 14 ~IiH~v--~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sI-a~P~i~tG~~g~p~~~~a~~~ 73 (110)
.|+|++ |.+|.. +....+.+..+...++.+.+-+ |=|++..|.||.-.-..++..
T Consensus 49 eIv~TiiCGDnyf~-----en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV 106 (349)
T PF07355_consen 49 EIVATIICGDNYFN-----ENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAV 106 (349)
T ss_pred EEEEEEEECcchhh-----hCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHH
Confidence 577776 677665 3566688888999999987765 449999999995444444443
No 87
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=43.98 E-value=30 Score=21.53 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=22.9
Q ss_pred ccccCCCccChHHHHHHHHHHHHHHhc
Q 033840 56 AISCGVSQYPPDEAATIAISTVKEFAN 82 (110)
Q Consensus 56 ~i~tG~~g~p~~~~a~~~~~~i~~~~~ 82 (110)
+|.-|.|.++.+..|..|++..+++++
T Consensus 70 AI~~G~y~vD~~kIAd~Ll~~a~ell~ 96 (98)
T PRK10810 70 AIRNGELKMDTGKIADALIKEAQSDLQ 96 (98)
T ss_pred HHHcCCcccCHHHHHHHHHHHHHHHHh
Confidence 344589999999999999999988875
No 88
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=43.62 E-value=1.4e+02 Score=22.63 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHH--HHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCLSV--GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 30 ~~~L~~~~~~~L~~--a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
...+|.+-..++-. ...++.+++++ ||+|.. |+..++.+.... .+++|++...+++.-+.|...+.+.
T Consensus 109 lTa~RTaAasavAa~~LA~~da~~lai--IGaG~q-------A~~ql~a~~~v~-~~~~I~i~~r~~~~~e~~a~~l~~~ 178 (330)
T COG2423 109 LTALRTAAASAVAAKYLARKDASTLAI--IGAGAQ-------ARTQLEALKAVR-DIREIRVYSRDPEAAEAFAARLRKR 178 (330)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEE--ECCcHH-------HHHHHHHHHhhC-CccEEEEEcCCHHHHHHHHHHHHhh
Confidence 45677776666533 34557777776 888854 344444444332 5899999999999999999888876
Q ss_pred hc
Q 033840 108 LQ 109 (110)
Q Consensus 108 ~~ 109 (110)
|.
T Consensus 179 ~~ 180 (330)
T COG2423 179 GG 180 (330)
T ss_pred cC
Confidence 53
No 89
>PLN00198 anthocyanidin reductase; Provisional
Probab=43.20 E-value=1.1e+02 Score=22.28 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCceEEEecCCCCCCCCCcHHHH----HHHHHHHHHHHHhC-CCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDIL----RSAYKNCLSVGKAN-NIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L----~~~~~~~L~~a~~~-~~~sIa~ 54 (110)
.++.|||.++|...........+ -....+.|+.|.+. +.+.+-+
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~ 128 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVIL 128 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 37899999997432211111111 34456777777665 5666655
No 90
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=41.20 E-value=1e+02 Score=21.49 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCCCCC-C--cHHHH----HHHHHHHHHHHHhCCCc
Q 033840 11 PVSHVIHTVGPVFNFHC-N--PEDIL----RSAYKNCLSVGKANNIQ 50 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~-~--~~~~L----~~~~~~~L~~a~~~~~~ 50 (110)
.++.|||+++....... . ..+.+ -...+++++.|.+.|.+
T Consensus 57 ~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 57 GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred CCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 48999999986432111 1 11122 23367888888888874
No 91
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=41.09 E-value=22 Score=19.46 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=12.6
Q ss_pred ccccCCCccChHHHHHHHHHH
Q 033840 56 AISCGVSQYPPDEAATIAIST 76 (110)
Q Consensus 56 ~i~tG~~g~p~~~~a~~~~~~ 76 (110)
+|..|.|.++.+..|+-|++.
T Consensus 36 ~I~~G~Y~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 36 AIASGTYKVDAEKIAEKMLDF 56 (57)
T ss_dssp HHHTT-----HHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHhc
Confidence 345689999999999999875
No 92
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=40.88 E-value=64 Score=22.91 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=25.9
Q ss_pred CCceEEEecCCCCCCCCCcH---HHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCNPE---DILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~---~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
+++.|||.+++.-....+.. +.-.....++++.|.+.+.+ +.+
T Consensus 66 ~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~ 111 (314)
T TIGR02197 66 KIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIP-FIY 111 (314)
T ss_pred CCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCc-EEE
Confidence 58999999986422111111 12235567888888888864 444
No 93
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=40.81 E-value=66 Score=23.29 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHH
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 72 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~ 72 (110)
..-....++.+..|.+.|++.+.+=+++|.+..=|.+++.-.
T Consensus 43 ~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~l 84 (245)
T COG0020 43 KAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFL 84 (245)
T ss_pred HHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHH
Confidence 445567778888888999999999999999998888777663
No 94
>PRK07475 hypothetical protein; Provisional
Probab=39.90 E-value=1.4e+02 Score=21.31 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeccccc---------CCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHH
Q 033840 32 ILRSAYKNCLSVGKANNIQYIAFPAISC---------GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDI 96 (110)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~sIa~P~i~t---------G~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~ 96 (110)
.+...+..+.+..++.|.+.|++|+ ++ ...+.|.-..+...+..++......++|-++..+...
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~C-gt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~ 134 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSC-GFLALFQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILTADASS 134 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEech-HHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEeCCchh
Confidence 4666777778888889999999987 32 1234555555555555555444345677777776663
No 95
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=39.89 E-value=93 Score=24.00 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=32.2
Q ss_pred EccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccCh
Q 033840 4 ECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66 (110)
Q Consensus 4 iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~ 66 (110)
++.|+...|.|= ..|.+.+.. .+.+.+-+-++. ..+.|++.|.|-...++.+|.+.
T Consensus 139 isrGC~~~CsfC---~ip~~~G~~rsr~~e~Vl~Ei~~----l~~~G~~ei~l~g~d~~~yg~d~ 196 (420)
T TIGR01578 139 INQGCLGNCSYC---ITKHARGKLASYPPEKIVEKARQ----LVAEGCKEIWITSQDTGAYGRDI 196 (420)
T ss_pred EccCCCCCCCCC---ccccCCCCcccCCHHHHHHHHHH----HHHCCCeEEEEEeeccccccCCC
Confidence 567788888862 223333322 222233223222 33469999999888888777653
No 96
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.87 E-value=27 Score=27.28 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCceEEecccccC
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISCG 60 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~tG 60 (110)
-..+||+++.|..+++++|.+|.+-..
T Consensus 457 iaGlRNIiktaar~d~sTIhIPLLLid 483 (598)
T KOG4506|consen 457 IAGLRNIIKTAARHDISTIHIPLLLID 483 (598)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeEEec
Confidence 357899999999999999999998654
No 97
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=38.16 E-value=1.2e+02 Score=21.66 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=23.7
Q ss_pred CCceEEEecCC-CCCCCCCcHHHHH---HHHHHHHHHHHhCCCce
Q 033840 11 PVSHVIHTVGP-VFNFHCNPEDILR---SAYKNCLSVGKANNIQY 51 (110)
Q Consensus 11 ~~k~IiH~v~P-~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~s 51 (110)
.++.|||+++- .... ......+. ....++|+.|.+.+.+-
T Consensus 68 ~~d~Vih~A~~~~~~~-~~~~~~~~~n~~~t~~ll~~~~~~~~~~ 111 (308)
T PRK11150 68 DIEAIFHEGACSSTTE-WDGKYMMDNNYQYSKELLHYCLEREIPF 111 (308)
T ss_pred CccEEEECceecCCcC-CChHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 58999999862 2111 11112222 33568888898888763
No 98
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=37.67 E-value=1.8e+02 Score=22.03 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCceEEEecCCC---------CCCCC---CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHH
Q 033840 11 PVSHVIHTVGPV---------FNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 78 (110)
Q Consensus 11 ~~k~IiH~v~P~---------~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~ 78 (110)
++.+|+-++||. |.+.+ .+.+.|++.++.-|+.+.+.|++-++| --+|...=|+++++.+.
T Consensus 112 ~~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~f-------ETip~~~EA~a~l~~l~ 184 (317)
T KOG1579|consen 112 ETGYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAF-------ETIPNVAEAKAALELLQ 184 (317)
T ss_pred ccceeeeecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEE-------eecCCHHHHHHHHHHHH
Confidence 344777777763 22222 356779999999999999999999998 34677888899999988
Q ss_pred HHh-cCCCEEEEEecC
Q 033840 79 EFA-NDFKEVHFILFT 93 (110)
Q Consensus 79 ~~~-~~l~~I~~v~~~ 93 (110)
+.. +..--|.+-+.|
T Consensus 185 ~~~~~~p~~is~t~~d 200 (317)
T KOG1579|consen 185 ELGPSKPFWISFTIKD 200 (317)
T ss_pred hcCCCCcEEEEEEecC
Confidence 862 222334444443
No 99
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=36.77 E-value=1.2e+02 Score=19.77 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=19.9
Q ss_pred CCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 47 NNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 47 ~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.|-.||.+..+|.-...-|. .++...++.+..+.
T Consensus 91 ~N~~sigI~~iG~~~~~~pt-~~q~~al~~Li~~~ 124 (142)
T smart00701 91 YNDISLGIAFIGNFTDKLPT-DAALDAAQDLLACA 124 (142)
T ss_pred CCCCeEEEEEEeCCCCCCCc-HHHHHHHHHHHHHH
Confidence 45678999888765444444 44444445555543
No 100
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=36.08 E-value=1.8e+02 Score=21.56 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=40.4
Q ss_pred CceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCC-CccChHHHHHHHHHHHHHHh
Q 033840 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV-SQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~-~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.|+|....|.- +-.+.=++++...++.|+..|++.|.|=+ |. .+-+++++-+-+.+++.+-+
T Consensus 68 ApYlINl~s~~~----e~~ekS~~~l~~e~~r~~~lG~~~lv~Hp---G~~~~~~~e~~l~~i~~~Ln~~~ 131 (280)
T COG0648 68 APYLINLASPEK----EKVEKSIERLIDEIDRCEQLGAKLLVFHP---GSYLGQGKEEGLNRIAEALNELL 131 (280)
T ss_pred cceeecCCCCCH----HHHHHHHHHHHHHHHHHHHcCCcEEEECC---ccccCCCHHHHHHHHHHHHHHHh
Confidence 456666655531 11345667777888999999999999932 32 22336777777777765544
No 101
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=35.59 E-value=1e+02 Score=23.24 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhCCCc--------eEEecccccCCCccChHHHHHHHHHH
Q 033840 21 PVFNFHCNPEDILRSAYKNCLSVGKANNIQ--------YIAFPAISCGVSQYPPDEAATIAIST 76 (110)
Q Consensus 21 P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~--------sIa~P~i~tG~~g~p~~~~a~~~~~~ 76 (110)
|.|+.. ...|+.|-+.+-+.|.++|.+ ++++|-++|=..|+|..+-.++-+++
T Consensus 243 ~~wHPa---S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLda 303 (342)
T KOG1576|consen 243 PPWHPA---SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDA 303 (342)
T ss_pred CCCCCC---CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHh
Confidence 466653 368899999999999999876 56788888888898887777776663
No 102
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.44 E-value=69 Score=23.51 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
..+.-....++|+++|.+.|+++|-+
T Consensus 90 ~r~~aleiM~KaI~LA~dLGIRtIQL 115 (287)
T COG3623 90 TRQQALEIMEKAIQLAQDLGIRTIQL 115 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeEee
Confidence 34566678889999999999999988
No 103
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=34.27 E-value=97 Score=22.60 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEecccccC---CCccChHHHHHHHHHHHHHHhc
Q 033840 30 EDILRSAYKNCLSVGKANNIQYIAFPAISCG---VSQYPPDEAATIAISTVKEFAN 82 (110)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG---~~g~p~~~~a~~~~~~i~~~~~ 82 (110)
.+.+.+....+-..+.-+|+.|||+..-... ....+.+.++++....++..+.
T Consensus 99 ~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 99 DDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALLA 154 (252)
T ss_pred cceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHHh
Confidence 3455666666777778899999999777553 2334789999998888887765
No 104
>PLN02240 UDP-glucose 4-epimerase
Probab=34.27 E-value=1e+02 Score=22.46 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=27.3
Q ss_pred CCceEEEecCCCCCCCC--CcHHHH---HHHHHHHHHHHHhCCCceEEecc
Q 033840 11 PVSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAFPA 56 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~sIa~P~ 56 (110)
.++.|||+++....... .....+ -....+.++.|.+.+.+.+.+..
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 57999999975322111 111222 23445778888888888776633
No 105
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.53 E-value=2.3e+02 Score=22.14 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred EccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccCh--HHHHHHHHHHHHH
Q 033840 4 ECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP--DEAATIAISTVKE 79 (110)
Q Consensus 4 iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~--~~~a~~~~~~i~~ 79 (110)
++.|++..|.| |..|...+.. .+.+.+.+-++. ..+.|++.|.|-...++.+|.+. .....-+++.+.+
T Consensus 161 I~rGC~~~Csf---C~~p~~~G~~rsr~~e~Il~ei~~----l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~ 233 (459)
T PRK14338 161 IIYGCNMSCSY---CVIPLRRGRERSRPLAEIVEEVRR----IAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE 233 (459)
T ss_pred cccCCCCCCCc---CCeeccCCCCccCCHHHHHHHHHH----HHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh
Confidence 57888888886 3334333221 222233333332 33469999999877777777642 2233344455544
Q ss_pred HhcCCCEEEEEe
Q 033840 80 FANDFKEVHFIL 91 (110)
Q Consensus 80 ~~~~l~~I~~v~ 91 (110)
. ..+.+|++..
T Consensus 234 ~-~gi~~ir~~~ 244 (459)
T PRK14338 234 I-PGLERLRFLT 244 (459)
T ss_pred c-CCcceEEEEe
Confidence 2 2345666644
No 106
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=33.50 E-value=60 Score=23.91 Aligned_cols=48 Identities=4% Similarity=-0.121 Sum_probs=27.4
Q ss_pred eEccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 3 KECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 3 ~iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
-+|.+++|.|.|=..--++.|.... -+.+.+.+ .++.+.+.|++.|.|
T Consensus 22 ~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~----~i~~~~~~gi~~I~~ 71 (331)
T PRK00164 22 SVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIER----LVRAFVALGVRKVRL 71 (331)
T ss_pred EEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHH----HHHHHHHCCCCEEEE
Confidence 4799999999874332222222221 13334433 334455669999998
No 107
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=33.41 E-value=1.6e+02 Score=21.59 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhc-CCCEEEEEecC------hHHHHHHHHHHHHHhc
Q 033840 69 AATIAISTVKEFAN-DFKEVHFILFT------DDIYNVWLKKAKELLQ 109 (110)
Q Consensus 69 ~a~~~~~~i~~~~~-~l~~I~~v~~~------~~~~~~f~~~~~~~~~ 109 (110)
...-.++.+++|++ ..++|.++.+. ++..+.+.+.+.+.|+
T Consensus 98 ~~~~~L~~i~~fl~~~p~Evvil~~~~~~~~~~~~~~~l~~~l~~~fg 145 (290)
T cd08616 98 LVKEILEEINDFLTEHPKEVVILDFNHFYGMTEEDHEKLLKMIKSIFG 145 (290)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCHHHHHHHHHHHHHHhc
Confidence 33445899999997 56888888775 3345666677776664
No 108
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.35 E-value=64 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCceEEecccc
Q 033840 37 YKNCLSVGKANNIQYIAFPAIS 58 (110)
Q Consensus 37 ~~~~L~~a~~~~~~sIa~P~i~ 58 (110)
.+..++.|.++|++.+++.-=+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 4567888899999999996655
No 109
>PF10719 ComFB: Late competence development protein ComFB; InterPro: IPR019657 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The development of genetic competence in Bacillus subtilis is a highly regulated adaptive response to stationary-phase stress. For competence to develop, the transcriptional regulator, ComK, must be activated. ComK is required for the expression of genes encoding proteins that function in DNA uptake. In log-phase cultures, ComK is inactive in a complex with MecA and ClpC. The comS gene is induced in response to high culture cell density and nutritional stress and its product functions to release active ComK from the complex. ComK then stimulates the transcription initiation of its own gene as well as that of the late competence operons []. The comF locus has three open reading frames and is driven by a single sigma A-like promoter in front of comFORF1. It is dependent on early regulatory competence genes and is only expressed in competence medium. ComFORF1 is similar to an extensive family of ATP-dependent RNA/DNA helicases with closer similarity to the DEAD protein subfamily and to the PriA protein in Escherichia coli. ComFORF1 late gene product plays an essential role during the binding and uptake events involved in B. subtilis transformation []. ComFB is the second protein encoded within the late competence locus ComF []. The function of ComFB within late competence development is not known.
Probab=33.26 E-value=46 Score=19.65 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCCCceEEEecCCCCCCCCC----cHHHHHHHHHHHHHHHH
Q 033840 8 FKLPVSHVIHTVGPVFNFHCN----PEDILRSAYKNCLSVGK 45 (110)
Q Consensus 8 g~L~~k~IiH~v~P~~~~~~~----~~~~L~~~~~~~L~~a~ 45 (110)
-+||.+||-|-.|-.+..... -...+...+.+++....
T Consensus 39 N~LPPrYv~~~~~~~~~~~~~~~~~~~~~I~~av~~A~~~V~ 80 (85)
T PF10719_consen 39 NRLPPRYVVSEVGEAYALSEEERQQMRADILTAVAEAIEIVK 80 (85)
T ss_pred cCCCCeEEEecCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999877654221 22344444555544443
No 110
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=32.08 E-value=2.2e+02 Score=21.64 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=18.4
Q ss_pred CCCEEEEEecChHHHHHHHHHHHH
Q 033840 83 DFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 83 ~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
.-..+.++..|+..|+.-+++|.+
T Consensus 145 ~hpNLtl~tRd~~SY~~a~~~F~~ 168 (339)
T COG5039 145 AHPNLTLMTRDEQSYQFAKEYFQK 168 (339)
T ss_pred cCCCcEEEEechhhHHHHHHHhhc
Confidence 345678888888888888887765
No 111
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.62 E-value=1.9e+02 Score=20.36 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+..++.++++++.|.+.|.+.|.++. |....+++.++.-+.+.+.+++..
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~ 130 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLV-GKTPAGFSSEQIHATLVENLRYAA 130 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC-CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667789999999999999987753 221234555665555555555543
No 112
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=31.17 E-value=2.2e+02 Score=21.05 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHH--HHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCLSV--GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 30 ~~~L~~~~~~~L~~--a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
...+|.+--.+|-. ....+.++++ .||+|..+ +.-++.+..... +++|++...+.+..+.|.+.+.+
T Consensus 107 lT~~RTaA~sala~~~La~~~~~~l~--viGaG~QA-------~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~ 175 (313)
T PF02423_consen 107 LTALRTAAVSALAARYLARPDARTLG--VIGAGVQA-------RWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD 175 (313)
T ss_dssp HHHHHHHHHHHHHHHHHS-TT--EEE--EE--SHHH-------HHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHhCcCCCceEE--EECCCHHH-------HHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc
Confidence 46677777776643 2335666665 58888543 344455555555 99999999999999999998876
No 113
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=31.14 E-value=66 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCceEEe
Q 033840 36 AYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 36 ~~~~~L~~a~~~~~~sIa~ 54 (110)
-+-++++.|.++|+..|++
T Consensus 124 nVl~Ai~~Ak~~gm~vI~l 142 (176)
T COG0279 124 NVLKAIEAAKEKGMTVIAL 142 (176)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 4557889999999999999
No 114
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=31.09 E-value=2.2e+02 Score=21.12 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHH--HHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCL--SVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 30 ~~~L~~~~~~~L--~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
...+|.+-..+| +.....+.++++| ||+|..+ +..++.+... ..+++|++...+.+..+.|.+.+.+
T Consensus 107 lT~~RTaA~salaa~~La~~~~~~lgi--iG~G~qA-------~~~l~al~~~-~~~~~v~V~~r~~~~~~~~~~~~~~ 175 (325)
T TIGR02371 107 ITDMRTGAAGGVAAKYLARKDSSVLGI--IGAGRQA-------WTQLEALSRV-FDLEEVSVYCRTPSTREKFALRASD 175 (325)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCEEEE--ECCCHHH-------HHHHHHHHhc-CCCCEEEEECCCHHHHHHHHHHHHh
Confidence 467888888887 5555667777764 8888654 3333444443 4689999999999988888887764
No 115
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.81 E-value=1.7e+02 Score=20.27 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=29.2
Q ss_pred cCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecCh---HHHHHHHHHHHHHh
Q 033840 59 CGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD---DIYNVWLKKAKELL 108 (110)
Q Consensus 59 tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~---~~~~~f~~~~~~~~ 108 (110)
-|.|+...+..-+++..++++.++. .++.+++.=. -.-..|.+.+++.+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl 127 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVL 127 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHh
Confidence 3556677777777888888776654 3333333222 23566666666655
No 116
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.50 E-value=1.6e+02 Score=19.40 Aligned_cols=34 Identities=6% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 033840 74 ISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 74 ~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
++.+++|+.+-+++.++..+++-+.+.++.+.++
T Consensus 26 ve~ireyi~sA~r~vV~t~N~~K~~aindvlrrf 59 (156)
T COG4019 26 VEKIREYIVSAKRIVVATNNQKKFKAINDVLRRF 59 (156)
T ss_pred HHHHHHHHhccceEEEecCCHHHHHHHHHHHHHh
Confidence 4778888888899999999999999998888765
No 117
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=30.35 E-value=2.2e+02 Score=20.80 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=45.3
Q ss_pred CceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
-+.|||-+|-.+-+... .-.|+.-|+...+.|+.-||.|-. .+|+-...|+...+..++.+
T Consensus 16 P~gvihFiGGaf~ga~P-----~itYr~lLe~La~~Gy~ViAtPy~----~tfDH~~~A~~~~~~f~~~~ 76 (250)
T PF07082_consen 16 PKGVIHFIGGAFVGAAP-----QITYRYLLERLADRGYAVIATPYV----VTFDHQAIAREVWERFERCL 76 (250)
T ss_pred CCEEEEEcCcceeccCc-----HHHHHHHHHHHHhCCcEEEEEecC----CCCcHHHHHHHHHHHHHHHH
Confidence 46799998776655321 236888888888899999999985 45888888888877766654
No 118
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=62 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=14.8
Q ss_pred CceEEEecCCCCCCCCCcH
Q 033840 12 VSHVIHTVGPVFNFHCNPE 30 (110)
Q Consensus 12 ~k~IiH~v~P~~~~~~~~~ 30 (110)
|-...|.+||-|-++-.+.
T Consensus 263 Cg~~~~~~GPlW~GpL~d~ 281 (380)
T COG1867 263 CGGKVHLAGPLWLGPLHDE 281 (380)
T ss_pred ccccceeccCcccCcccCH
Confidence 4569999999999875433
No 119
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=29.49 E-value=2.3e+02 Score=20.69 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=36.2
Q ss_pred CceEEEecCCCCCCCC--CcHHHHH---HHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHH
Q 033840 12 VSHVIHTVGPVFNFHC--NPEDILR---SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 77 (110)
Q Consensus 12 ~k~IiH~v~P~~~~~~--~~~~~L~---~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i 77 (110)
++.|||.+|....... ...+.++ ....+.++.|.+.|.+.+.+-.=.......++.-+++.+.+.+
T Consensus 75 iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~~p~~~Y~~sK~~~E~l 145 (324)
T TIGR03589 75 VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLYGATKLASDKL 145 (324)
T ss_pred CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 6899999986532211 1222232 2456888888888887766522111222233445555555554
No 120
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=28.97 E-value=71 Score=24.40 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCceEEe-cccccCCCcc-ChHHHHHHHHHHHHHHhcCCCEEEEEecChH
Q 033840 34 RSAYKNCLSVGKANNIQYIAF-PAISCGVSQY-PPDEAATIAISTVKEFANDFKEVHFILFTDD 95 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~-P~i~tG~~g~-p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~ 95 (110)
-.-+++.|++|+++|++.+.+ |.++-+-... .....-+.+...+... ..-..+.+++++++
T Consensus 251 ~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~~~~w~~~i~~l-~~~~~~~~~dmn~d 313 (345)
T PF07611_consen 251 FFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKVYESWWPIIKKL-AKEYGIPFLDMNED 313 (345)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhchhhHHHHHHHHH-HhcCCceEecccCC
Confidence 446779999999999999998 7666553222 1222222222222222 22345667666664
No 121
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=28.41 E-value=69 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.3
Q ss_pred cCCCccChHHHHHHHHHHHHHHhc
Q 033840 59 CGVSQYPPDEAATIAISTVKEFAN 82 (110)
Q Consensus 59 tG~~g~p~~~~a~~~~~~i~~~~~ 82 (110)
.|.-|.|++++++.+.+.+.++++
T Consensus 78 lG~~g~~aE~Vg~~Aa~~L~~~i~ 101 (103)
T PF05189_consen 78 LGERGVPAEKVGEEAAEELLEYIR 101 (103)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHh
Confidence 467889999999999999998874
No 122
>PRK13660 hypothetical protein; Provisional
Probab=28.13 E-value=2.1e+02 Score=19.78 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 033840 28 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFT 93 (110)
Q Consensus 28 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~ 93 (110)
.....|+.++++.|..+.+.|++-+-+ .|..|+ |.-|--++-++++-...++-+.++-|.
T Consensus 22 p~~~~IK~aL~~~l~~~~e~G~~wfi~----ggalG~--d~wAaEvvl~LK~~yp~lkL~~~~PF~ 81 (182)
T PRK13660 22 PKIKYIKKAIKRKLIALLEEGLEWVII----SGQLGV--ELWAAEVVLELKEEYPDLKLAVITPFE 81 (182)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCCEEEE----CCcchH--HHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence 345789999999999999999996654 677776 444434445555433445555554443
No 123
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.08 E-value=1e+02 Score=20.20 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=31.6
Q ss_pred CCCCceEEEecC--CCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEe-ccccc
Q 033840 9 KLPVSHVIHTVG--PVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF-PAISC 59 (110)
Q Consensus 9 ~L~~k~IiH~v~--P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~-P~i~t 59 (110)
.|+++++..-.| +.+.... ...+.+.+.++.....|++.|++ |++ |.-+.
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~ 136 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGP 136 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSS
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCc
Confidence 356777665555 3333322 24578888999999999999965 666 43333
No 124
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=27.93 E-value=2.2e+02 Score=21.60 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCceEEe-ccc------ccCCCccChHHHHHHHHHHHHHHh
Q 033840 38 KNCLSVGKANNIQYIAF-PAI------SCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 38 ~~~L~~a~~~~~~sIa~-P~i------~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
.+-++.+.+.|+.+|++ |.+ .+|...+.++-..+-+++.|++..
T Consensus 64 ~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~ 114 (330)
T COG0113 64 VEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAF 114 (330)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhC
Confidence 34456677899999986 555 368888999999999999998755
No 125
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=27.59 E-value=2.6e+02 Score=20.77 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhCCCceEEecccccCCCccCh------HHHHHHHHHHHHHHhcCCCEE-EEEecChHHHHHHHHHH
Q 033840 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP------DEAATIAISTVKEFANDFKEV-HFILFTDDIYNVWLKKA 104 (110)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~------~~~a~~~~~~i~~~~~~l~~I-~~v~~~~~~~~~f~~~~ 104 (110)
...+..+..++..++.|++.+-.| ..+..|.|. +.+.+.+-..+..|.+.+..+ .+|..++.-+..|.+..
T Consensus 161 ~~~~~~~~~~~ll~~~g~~v~~~~--~~~ccG~~~~~~G~~~~~~~~a~~n~~~~~~~~~~~~~iv~~~~~c~~~~~~~y 238 (388)
T COG0247 161 RDPEVGKAAVRLLEKLGVEVVLPG--EEGCCGAPAYRSGFLERAKKLAKKNIEAFKKLIEGGDPIVTVCPACYGALKKEY 238 (388)
T ss_pred cchHHHHHHHHHHHHcCCeEecCC--CCCcCCChhhhcCCHHHHHHHHHHHHHHHHHHhhccCCEEEeCcHHHhHHHHHH
Confidence 445556666677788886655555 555555544 223333333333332212222 57888888888888777
Q ss_pred HHHh
Q 033840 105 KELL 108 (110)
Q Consensus 105 ~~~~ 108 (110)
.+++
T Consensus 239 ~~~~ 242 (388)
T COG0247 239 PELL 242 (388)
T ss_pred HHHH
Confidence 7665
No 126
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=27.53 E-value=2.2e+02 Score=19.95 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 033840 71 TIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 71 ~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
+..+..+..+-..+++|++..-...-...|++.|.++
T Consensus 120 ~~~l~~ll~~Y~~~~eI~IYeDR~~hvk~Fr~Ff~~~ 156 (197)
T PF10307_consen 120 QAFLEDLLHTYKNAEEIRIYEDRPKHVKGFRDFFEEL 156 (197)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHHh
Confidence 3344444444457789998888888888888888775
No 127
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=27.25 E-value=1.7e+02 Score=18.44 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=31.8
Q ss_pred cChHHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHHHHHHHHHH
Q 033840 64 YPPDEAATIAISTVKEFAN-DFKEVHFILFTDD-IYNVWLKKAKEL 107 (110)
Q Consensus 64 ~p~~~~a~~~~~~i~~~~~-~l~~I~~v~~~~~-~~~~f~~~~~~~ 107 (110)
-+++++|+.++..+|++.+ ..+.|.+-..++. .+.+..+.+.+.
T Consensus 78 ~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~RA 123 (125)
T PF03481_consen 78 GDPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRRA 123 (125)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHHh
Confidence 5778999999999999986 4777777666643 567777666653
No 128
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.22 E-value=1.3e+02 Score=19.14 Aligned_cols=27 Identities=4% Similarity=0.006 Sum_probs=23.3
Q ss_pred CCCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 83 DFKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 83 ~l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
-+.+|++++.+...++.|...+++.-+
T Consensus 84 li~~i~v~C~~~~e~~~Wl~hL~~~~~ 110 (111)
T cd01225 84 LIERIVVVCNNPQDAQEWVELLNANNP 110 (111)
T ss_pred CcCcEEEEeCCHHHHHHHHHHHHhhcC
Confidence 358999999999999999999987654
No 129
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.03 E-value=77 Score=23.49 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=26.7
Q ss_pred eEccCCCCCCceEEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 3 KECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 3 ~iT~~g~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
-+|..+||.|.|=. ..+..+.... -+.+.+. ..++.+.+.|++.|.|
T Consensus 19 ~iT~~CNl~C~yC~-~~~~~~~~~~~~ls~eei~----~li~~~~~~Gv~~I~~ 67 (329)
T PRK13361 19 SVTDRCDFRCVYCM-SEDPCFLPRDQVLSLEELA----WLAQAFTELGVRKIRL 67 (329)
T ss_pred EecCCccccCCCCC-CCCCCcCCccCCCCHHHHH----HHHHHHHHCCCCEEEE
Confidence 47999999999843 2222222211 1223333 3444455688888888
No 130
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=26.72 E-value=1.2e+02 Score=17.49 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.8
Q ss_pred CceEEecccccC-CCccChHHHHHHHHHHHHHHhcCC
Q 033840 49 IQYIAFPAISCG-VSQYPPDEAATIAISTVKEFANDF 84 (110)
Q Consensus 49 ~~sIa~P~i~tG-~~g~p~~~~a~~~~~~i~~~~~~l 84 (110)
--+|.||.+|.= ..|...+++.+.+.+.+.++.+..
T Consensus 38 dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~~~~p 74 (82)
T PF02563_consen 38 DGTISLPLIGPVKVAGLTLEEAEEEIKQRLQKYYRDP 74 (82)
T ss_dssp TSEEEETTTEEEE-TT--HHHHHHHHHHHHTTTSSS-
T ss_pred CCcEeecccceEEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 347999999854 688999999999888888876543
No 131
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=26.72 E-value=1.3e+02 Score=22.39 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=26.3
Q ss_pred eEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 3 KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 3 ~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
-+|..++|.|+|=.....+.+....-+.+.+ .+.++.+.+.|...|.|
T Consensus 12 eiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~----~~ii~~~~~~g~~~v~~ 59 (358)
T TIGR02109 12 ELTHRCPLQCPYCSNPLELARRKAELTTEEW----TDVLTQAAELGVLQLHF 59 (358)
T ss_pred eeccccCcCCCCCCCChhcccccCCCCHHHH----HHHHHHHHhcCCcEEEE
Confidence 4799999999864432222222211122333 33445556677777776
No 132
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.47 E-value=40 Score=24.87 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=41.6
Q ss_pred eeEccCCCCCCceEEEecC--CCCCCCC---CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCc
Q 033840 2 LKECRGFKLPVSHVIHTVG--PVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63 (110)
Q Consensus 2 a~iT~~g~L~~k~IiH~v~--P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g 63 (110)
.+|.+=||.=++-+++.++ |.-..+. .....|.+.++.+|..|.+.|-+|+.-=.-+.|..|
T Consensus 166 ~vvaGvGNIYa~E~Lf~agI~P~~~a~~l~~~~~~~l~~~i~~vl~~ai~~gGtt~r~~~~~~g~~G 232 (273)
T COG0266 166 KVVAGVGNIYADEILFRAGIHPARPAGDLSLAQLALLHEAIKDVLADAIERGGTTLRDFVNADGKPG 232 (273)
T ss_pred CceecccHHHHHHHHHHcCCCcccCccccCHHHHHHHHHHHHHHHHHHHHhCCCcccceeccCCCCC
Confidence 3455557777777777665 3322222 245689999999999999999988876444555444
No 133
>PRK07201 short chain dehydrogenase; Provisional
Probab=25.87 E-value=1.6e+02 Score=23.55 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=26.4
Q ss_pred CCceEEEecCCCCCCCCC--cHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.++.|||+++..-..... ..+.-.....++++.|.+.+.+.+-+
T Consensus 77 ~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~ 122 (657)
T PRK07201 77 DIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHH 122 (657)
T ss_pred CCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEE
Confidence 579999999863211111 11222334668888888887766554
No 134
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=25.50 E-value=1.2e+02 Score=22.42 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=27.8
Q ss_pred eEccCCCCCCceEEEec-CCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 3 KECRGFKLPVSHVIHTV-GPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 3 ~iT~~g~L~~k~IiH~v-~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
-+|..++|.|+|=..-. ++.|.... -+.+.+. ..++.+.+.|++.|.|
T Consensus 15 ~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~----~~i~~~~~~gv~~V~l 65 (334)
T TIGR02666 15 SVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIE----RLVRAFVGLGVRKVRL 65 (334)
T ss_pred EecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHH----HHHHHHHHCCCCEEEE
Confidence 57999999998744332 23232211 1333333 3444556678888887
No 135
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=25.24 E-value=2.8e+02 Score=20.30 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEe---cccccCCCccChHHHHHHHHHHHHHHhcC
Q 033840 30 EDILRSAYKNCLSVGKANNIQYIAF---PAISCGVSQYPPDEAATIAISTVKEFAND 83 (110)
Q Consensus 30 ~~~L~~~~~~~L~~a~~~~~~sIa~---P~i~tG~~g~p~~~~a~~~~~~i~~~~~~ 83 (110)
.+.++...+..++.+.+.|+.-+=+ |...+...+++.++..+.+.+.+.+..+.
T Consensus 41 ~~~l~~~~~~~~~~~~~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T cd00443 41 GEALARALKEVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQW 97 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888899999998888665443 43333222899999999999999887653
No 136
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=25.12 E-value=1.8e+02 Score=21.26 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=23.7
Q ss_pred CCceEEEecCCCCCCC--CCcHHH---HHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFH--CNPEDI---LRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~--~~~~~~---L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
+++.|||+++...... .+.... -.....++++.|.+.+ +.+-+
T Consensus 68 ~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~ 115 (347)
T PRK11908 68 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVF 115 (347)
T ss_pred CCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence 4789999886432111 111111 1234567888888877 44443
No 137
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=25.05 E-value=85 Score=21.08 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=31.0
Q ss_pred CceEEEecCCCCC----CCC-CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCc
Q 033840 12 VSHVIHTVGPVFN----FHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63 (110)
Q Consensus 12 ~k~IiH~v~P~~~----~~~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g 63 (110)
.+.|||++++.-. ... ...+.-....++.|+.|.+.+.+.+-++.= ++++|
T Consensus 66 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS-~~~y~ 121 (236)
T PF01370_consen 66 IDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSS-ASVYG 121 (236)
T ss_dssp ESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-GGGGT
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 4789999987411 000 112233457789999999999866666332 33444
No 138
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=24.63 E-value=2.2e+02 Score=20.63 Aligned_cols=50 Identities=10% Similarity=-0.024 Sum_probs=26.8
Q ss_pred ccCCCccChHHHHH--------------------HHHHHHHHHhc--CCCEEEEEecChHHHHHHHHHHHHHh
Q 033840 58 SCGVSQYPPDEAAT--------------------IAISTVKEFAN--DFKEVHFILFTDDIYNVWLKKAKELL 108 (110)
Q Consensus 58 ~tG~~g~p~~~~a~--------------------~~~~~i~~~~~--~l~~I~~v~~~~~~~~~f~~~~~~~~ 108 (110)
-+|.+|+|.+++-+ -|.+.+++|++ ..+.++++-=. -++.-+.+.|+++|
T Consensus 179 lAG~ygi~~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-c~~~g~e~~Fe~~l 250 (277)
T COG4820 179 LAGNYGISLEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-CMQPGVEELFEKQL 250 (277)
T ss_pred EecccCcCHhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-ccCccHHHHHHHHh
Confidence 35677777766543 35556667775 45667665211 23344444444443
No 139
>PRK06046 alanine dehydrogenase; Validated
Probab=24.59 E-value=3e+02 Score=20.42 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHH--HHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCL--SVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 107 (110)
Q Consensus 30 ~~~L~~~~~~~L--~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~ 107 (110)
...+|.+-..++ +.....+.+.|++ ||+|..+ +..++.+... ..++.|.++..+.+..+.|.+.+.+.
T Consensus 108 lT~~RTaA~sala~~~La~~~~~~vgi--iG~G~qa-------~~h~~al~~~-~~i~~v~v~~r~~~~~~~~~~~~~~~ 177 (326)
T PRK06046 108 LTDMRTGAAGGVAAKYLARKDSKVVGI--IGAGNQA-------RTQLLALSEV-FDLEEVRVYDRTKSSAEKFVERMSSV 177 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEE--ECCcHHH-------HHHHHHHHhh-CCceEEEEECCCHHHHHHHHHHHHhh
Confidence 467888888777 5555566666664 7888653 3444445432 47899999999999888888877643
No 140
>PRK05086 malate dehydrogenase; Provisional
Probab=24.57 E-value=2.9e+02 Score=20.39 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=48.9
Q ss_pred CCceEEEecCCCCCCCCCcHHHHHH---HHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 11 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
.|+-||-++|..-..+....+.|.. .++++.+...+.+.+.+-+ +..-|.|..+.++.+.+.++
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi------vvsNP~D~~t~~~~~~~~~~ 135 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG------IITNPVNTTVAIAAEVLKKA 135 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------EccCchHHHHHHHHHHHHHh
Confidence 3788999998765444345567777 8889898889999888777 55678888888887777666
No 141
>PLN02427 UDP-apiose/xylose synthase
Probab=24.43 E-value=2e+02 Score=21.40 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=23.2
Q ss_pred CCceEEEecCCCCCCCC--CcHHHHHH---HHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVFNFHC--NPEDILRS---AYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~~L~~---~~~~~L~~a~~~~~~sIa~ 54 (110)
.++.|||+++....... ...+.+.. ...++|+.|.+.+ +.+-+
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~ 133 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIH 133 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEE
Confidence 37999999975322111 11223333 2346777787777 44443
No 142
>PF06672 DUF1175: Protein of unknown function (DUF1175); InterPro: IPR009558 This family consists of several hypothetical bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=24.35 E-value=44 Score=23.78 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCCCCCC-CcHHHHHHHHHHHHHHH-----HhCCCc
Q 033840 20 GPVFNFHC-NPEDILRSAYKNCLSVG-----KANNIQ 50 (110)
Q Consensus 20 ~P~~~~~~-~~~~~L~~~~~~~L~~a-----~~~~~~ 50 (110)
.|.|.... +|.-++|=|++.+|+.- .+.|++
T Consensus 44 ~~~W~~~qrDCAGLvRfA~rEAlk~hd~~w~~~~G~~ 80 (216)
T PF06672_consen 44 SPRWNPEQRDCAGLVRFAYREALKKHDAKWLRANGIS 80 (216)
T ss_pred CCcccccccchhHHHHHHHHHHHhhcCHHHHHHcCCC
Confidence 58897654 68889999999999874 445666
No 143
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.14 E-value=2.6e+02 Score=19.63 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.-.+.++++++.|...|.++|.+++...|. .-+.++.-+.+.+.+++..
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~l~ 135 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHAGY-LTPPNVIWGRLAENLSELC 135 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999886543332 2344444455555555543
No 144
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=24.13 E-value=2.4e+02 Score=19.22 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEE
Q 033840 28 NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFI 90 (110)
Q Consensus 28 ~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v 90 (110)
.....|+.++++.+..+.+.|++.+ |..|..|+ |.-|-.++-++++-...++-+.++
T Consensus 22 ~~~~~ik~~L~~~i~~lie~G~~~f----i~GgalG~--D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 22 PKIQVIKKALKKQIIELIEEGVRWF----ITGGALGV--DLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--EE----EE---TTH--HHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCEE----EECCcccH--HHHHHHHHHHHHhhhhheEEEEEE
Confidence 3567899999999999999998855 44667774 444444444444322334443333
No 145
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=24.11 E-value=2e+02 Score=18.35 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHHhc-------CCCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 65 PPDEAATIAISTVKEFAN-------DFKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 65 p~~~~a~~~~~~i~~~~~-------~l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
+.+..++..++-++.-++ ++-++.+.+.|...+..+.+..+++|+
T Consensus 48 d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~~f~~~n~v~~~~f~ 99 (130)
T COG0251 48 DIEAQTRQALANIKAVLEAAGSTLDDVVKVTVFLTDMNDFAAMNEVYDEFFE 99 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCchHHHHHHHHHHHHhc
Confidence 344444444444444442 334555666666667888888887775
No 146
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=23.80 E-value=1e+02 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
..+..+++++++++.|++..+-++.+
T Consensus 124 d~~~F~~~i~~A~~~A~~~~lvt~GI 149 (478)
T PRK15460 124 DEDAFRAAVRNAMPYAEAGKLVTFGI 149 (478)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 45789999999999997755666666
No 147
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.64 E-value=94 Score=19.38 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCceEEe
Q 033840 37 YKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 37 ~~~~L~~a~~~~~~sIa~ 54 (110)
-.++++.|.++|+++|++
T Consensus 14 a~r~~ra~r~~Gi~tv~v 31 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAV 31 (110)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCcceec
Confidence 457888999999999998
No 148
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.60 E-value=1.9e+02 Score=17.95 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHHh
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 108 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~~~ 108 (110)
-.++.+++++|+-...++.|.+ |.- ..++.+-++++.+.+.+.+..|.+...++|
T Consensus 34 ~~~Q~~~~l~ni~~~L~~aG~~---------~~~----------------~~~~dVvk~~vyl~d~~~~~~~~~v~~~~f 88 (114)
T cd06153 34 VEAQTRETLENIEALLEAAGRG---------GGA----------------QFLADLLRLKVYLRDREDLPAVRAILAARL 88 (114)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---------CCc----------------cchhheeEEEEEEccHHHHHHHHHHHHHHc
Confidence 3567777777766666666632 000 001244556666666777888888888877
Q ss_pred c
Q 033840 109 Q 109 (110)
Q Consensus 109 ~ 109 (110)
+
T Consensus 89 ~ 89 (114)
T cd06153 89 G 89 (114)
T ss_pred C
Confidence 5
No 149
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=23.40 E-value=2.5e+02 Score=20.30 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEEEecCh---------HHHHHHHHHHHHHhc
Q 033840 68 EAATIAISTVKEFAN-DFKEVHFILFTD---------DIYNVWLKKAKELLQ 109 (110)
Q Consensus 68 ~~a~~~~~~i~~~~~-~l~~I~~v~~~~---------~~~~~f~~~~~~~~~ 109 (110)
....-.++.+.+|++ ..++|.++.+.. +..+.+.+.+.+.|.
T Consensus 92 ~~~~~~l~~i~~fl~~~p~Evvil~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 143 (288)
T cd08587 92 EPVDEVLEDVNDFLDEHPKEVVILDFNHFYGMDDKSPEDHEKLVELLEDIFG 143 (288)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEEEEccccCCcccHHHHHHHHHHHHHHhc
Confidence 334456889999997 558888887753 456666677766653
No 150
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.29 E-value=2.8e+02 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=26.4
Q ss_pred CCceEEEecCCCC-----CCCCC-cHHHHHHHHHHHHHHHHhCCCceEEe
Q 033840 11 PVSHVIHTVGPVF-----NFHCN-PEDILRSAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 11 ~~k~IiH~v~P~~-----~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~ 54 (110)
.++.|||+++..- ..... ....=.....++++.|.+.+.+.+-+
T Consensus 85 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~ 134 (370)
T PLN02695 85 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY 134 (370)
T ss_pred CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4689999997531 11111 01111235578888888888887765
No 151
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=23.27 E-value=1.8e+02 Score=20.27 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=19.8
Q ss_pred CceEEEecCCCCCC-CCCc-HHHHHHHHHHHHHHHHhCCCc
Q 033840 12 VSHVIHTVGPVFNF-HCNP-EDILRSAYKNCLSVGKANNIQ 50 (110)
Q Consensus 12 ~k~IiH~v~P~~~~-~~~~-~~~L~~~~~~~L~~a~~~~~~ 50 (110)
++.|||+++..... .+.+ .+.=-...++.|+.|.+.+.+
T Consensus 88 v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~ 128 (249)
T PF07993_consen 88 VDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRK 128 (249)
T ss_dssp --EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS--
T ss_pred cceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 67999999875333 3332 233346778889999855443
No 152
>PLN02206 UDP-glucuronate decarboxylase
Probab=23.24 E-value=1.7e+02 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCceEEEecCCCCCCC--CCcHHHH---HHHHHHHHHHHHhCCCceE
Q 033840 11 PVSHVIHTVGPVFNFH--CNPEDIL---RSAYKNCLSVGKANNIQYI 52 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~--~~~~~~L---~~~~~~~L~~a~~~~~~sI 52 (110)
.++.|||++++.-... .+..+.+ .....++|+.|.+.|.+-|
T Consensus 183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V 229 (442)
T PLN02206 183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 229 (442)
T ss_pred CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 5899999997532111 1122222 2345688888988886533
No 153
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=23.12 E-value=91 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=25.9
Q ss_pred CCCceEEEecCCCCCCCCC-cHHHHHHHHHHHHHHHHhCC
Q 033840 10 LPVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKANN 48 (110)
Q Consensus 10 L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~~ 48 (110)
..-|-|||-++|-|..... -...-.++...+|+++...+
T Consensus 169 yaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~ 208 (625)
T KOG1707|consen 169 YAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDN 208 (625)
T ss_pred hhhheeeccCccccccccccccHHHHHHHHHHHhhhcccc
Confidence 3458899999999987542 23455566666677665543
No 154
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.10 E-value=3.6e+02 Score=21.37 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=50.8
Q ss_pred cCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChH----HHHHHHHHHHHHHh
Q 033840 6 RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPD----EAATIAISTVKEFA 81 (110)
Q Consensus 6 ~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~----~~a~~~~~~i~~~~ 81 (110)
.|++-.|-+ |+.|.-++...+ .-+.+.+.. .+...++|++.|-+-...++.||.+.. ..++. ++.+.+ .
T Consensus 152 eGCn~~Ctf---CiiP~~RG~~rS-r~~e~Il~e-v~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~L-l~~l~~-I 224 (437)
T COG0621 152 EGCNKFCTF---CIIPYARGKERS-RPPEDILKE-VKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADL-LRELSK-I 224 (437)
T ss_pred cCcCCCCCe---eeeeccCCCccC-CCHHHHHHH-HHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHH-HHHHhc-C
Confidence 344444543 445655554311 122222333 234467999999999999999998864 23332 344444 4
Q ss_pred cCCCEEEEEecC-----hHHHHHHHH
Q 033840 82 NDFKEVHFILFT-----DDIYNVWLK 102 (110)
Q Consensus 82 ~~l~~I~~v~~~-----~~~~~~f~~ 102 (110)
+.+.+|+|--.. ++..++|.+
T Consensus 225 ~G~~riR~~~~~P~~~~d~lI~~~~~ 250 (437)
T COG0621 225 PGIERIRFGSSHPLEFTDDLIEAIAE 250 (437)
T ss_pred CCceEEEEecCCchhcCHHHHHHHhc
Confidence 467788885443 334555444
No 155
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=23.03 E-value=29 Score=15.21 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 033840 30 EDILRSAYKNCL 41 (110)
Q Consensus 30 ~~~L~~~~~~~L 41 (110)
+++|+.|+..++
T Consensus 3 deiL~~CI~sAm 14 (20)
T PF05924_consen 3 DEILQECIGSAM 14 (20)
T ss_dssp HHHHHHHHHCTS
T ss_pred HHHHHHHHHHhc
Confidence 367777776543
No 156
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=22.92 E-value=3.3e+02 Score=20.58 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh---cCCCEEEEEecChHHHHHHHHHHHHHhc
Q 033840 39 NCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA---NDFKEVHFILFTDDIYNVWLKKAKELLQ 109 (110)
Q Consensus 39 ~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~---~~l~~I~~v~~~~~~~~~f~~~~~~~~~ 109 (110)
.+|..-.-.+-+|=.+..+|+|...+ .-+..|. .++++|++-....+.-+.+.+.+.+.|+
T Consensus 126 Salask~l~~~dS~vL~i~GsG~qA~----------~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~ 189 (333)
T KOG3007|consen 126 SALASKRLENPDSCVLTIFGSGLQAF----------WHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFS 189 (333)
T ss_pred hhhhhhhcCCCCceEEEEEcccchhH----------HHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhccc
Confidence 44444444566777788899997643 2233333 3689999999999999999998888775
No 157
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.68 E-value=3.6e+02 Score=20.73 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHH
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE 79 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~ 79 (110)
..+.+.++..|..+.++|++-| +|..|..+..+++++.+..++
T Consensus 54 ~~~~~~L~~~L~~~~~~gIkvI------~NaGg~np~~~a~~v~eia~e 96 (362)
T PF07287_consen 54 PDFVRDLRPLLPAAAEKGIKVI------TNAGGLNPAGCADIVREIARE 96 (362)
T ss_pred HHHHHHHHHHHHHHHhCCCCEE------EeCCCCCHHHHHHHHHHHHHh
Confidence 4566699999999999998754 466788888888887666665
No 158
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=22.63 E-value=2.2e+02 Score=20.31 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCc
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g 63 (110)
+.+.+.....+++...+++|++.|-+ ++||.|.
T Consensus 68 s~~~v~~~lq~~i~~le~~G~d~ill--lCTG~F~ 100 (221)
T PF07302_consen 68 SKKKVEPRLQACIAQLEAQGYDVILL--LCTGEFP 100 (221)
T ss_pred EHHHHHHHHHHHHHHHHHCCCCEEEE--eccCCCC
Confidence 56889999999999999999999886 6666644
No 159
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=22.31 E-value=1.7e+02 Score=16.92 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHH
Q 033840 32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 80 (110)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~ 80 (110)
.....+++.|..... .+++|.++.|+.- .++|.+++-..+.+.|.+-
T Consensus 42 l~~~i~~~~l~~l~~-~y~~i~~~~ia~~-l~~~~~~vE~~l~~~I~~~ 88 (105)
T PF01399_consen 42 LKEKIRRRNLRQLSK-PYSSISISEIAKA-LQLSEEEVESILIDLISNG 88 (105)
T ss_dssp HHHHHHHHHHHHHHH-C-SEEEHHHHHHH-HTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH-HhcccchHHHHHH-hccchHHHHHHHHHHHHCC
Confidence 444444455544443 9999999999764 5788888888888888663
No 160
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=22.30 E-value=2.5e+02 Score=20.16 Aligned_cols=42 Identities=5% Similarity=0.006 Sum_probs=25.5
Q ss_pred CCceEEEecCCCCCCCC--CcHH---HHHHHHHHHHHHHHhCCCceE
Q 033840 11 PVSHVIHTVGPVFNFHC--NPED---ILRSAYKNCLSVGKANNIQYI 52 (110)
Q Consensus 11 ~~k~IiH~v~P~~~~~~--~~~~---~L~~~~~~~L~~a~~~~~~sI 52 (110)
+++.|||+++....... +... .=.....+.++.|.+.|.+-|
T Consensus 54 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v 100 (299)
T PRK09987 54 RPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVV 100 (299)
T ss_pred CCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 47899999987543221 1111 112345688888888886543
No 161
>PTZ00333 triosephosphate isomerase; Provisional
Probab=22.22 E-value=2.3e+02 Score=20.59 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=38.5
Q ss_pred EEEecCCCCCCCC--CcHHHHHHHHHHHHHHHHhCCCceEEe---c--ccccCCCccChHHHHHHHHHHHHHHhc
Q 033840 15 VIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAF---P--AISCGVSQYPPDEAATIAISTVKEFAN 82 (110)
Q Consensus 15 IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~sIa~---P--~i~tG~~g~p~~~~a~~~~~~i~~~~~ 82 (110)
.|-|+|-...+.. ...+.+.+-++.+|+.....+...|.+ | +||||.. +..+-++.+.+.||+++.
T Consensus 125 pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~~~iiIAYEPvWAIGtg~~--a~~e~i~~~~~~IR~~l~ 197 (255)
T PTZ00333 125 VILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKV--ATPEQAQEVHAFIRKWLA 197 (255)
T ss_pred EEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHcceEEEEECCHHHhCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 4556665433221 244566666666665544445566666 7 4566543 455666777788888764
No 162
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=22.02 E-value=1.4e+02 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeccc
Q 033840 32 ILRSAYKNCLSVGKANNIQYIAFPAI 57 (110)
Q Consensus 32 ~L~~~~~~~L~~a~~~~~~sIa~P~i 57 (110)
.-.+..+-+|+.|.++|++-|-+.+=
T Consensus 114 YA~emLkl~L~~ar~lgi~~Vlvtcd 139 (174)
T COG3981 114 YAKEMLKLALEKARELGIKKVLVTCD 139 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 44567788999999999999988554
No 163
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=21.84 E-value=4.2e+02 Score=21.13 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred CCCCCceEEEecCCCCCCCC---C-cHHHHHHHHHHHHHHHHhCCCceEEe----ccccc-CCCccChHHHHHHHHHHHH
Q 033840 8 FKLPVSHVIHTVGPVFNFHC---N-PEDILRSAYKNCLSVGKANNIQYIAF----PAISC-GVSQYPPDEAATIAISTVK 78 (110)
Q Consensus 8 g~L~~k~IiH~v~P~~~~~~---~-~~~~L~~~~~~~L~~a~~~~~~sIa~----P~i~t-G~~g~p~~~~a~~~~~~i~ 78 (110)
+.+.-..++|+..|.+.... . .++. ..+....-++..++|-..||= |.+++ |..-+|+..--+.+-+..+
T Consensus 168 ~~~ll~~~~~~~~P~~y~~~~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ 246 (449)
T COG0161 168 YDPLLPEVLHLPAPYAYRRGFFGEGDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICD 246 (449)
T ss_pred ccccccCceecCCCcccccCCCCCChHHH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHH
Confidence 34455678899999864332 1 2333 455555555667788566553 99998 8888888877666655556
Q ss_pred HH
Q 033840 79 EF 80 (110)
Q Consensus 79 ~~ 80 (110)
+|
T Consensus 247 ky 248 (449)
T COG0161 247 KY 248 (449)
T ss_pred Hc
Confidence 64
No 164
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.40 E-value=1.6e+02 Score=18.42 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCCceEEe
Q 033840 35 SAYKNCLSVGKANNIQYIAF 54 (110)
Q Consensus 35 ~~~~~~L~~a~~~~~~sIa~ 54 (110)
+.+.+++..|.+.|++.|++
T Consensus 99 ~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 99 GDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 34556777788888887776
No 165
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=21.17 E-value=4.2e+02 Score=20.91 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=43.1
Q ss_pred eEEEec-CCCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCC--CEEEEE
Q 033840 14 HVIHTV-GPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDF--KEVHFI 90 (110)
Q Consensus 14 ~IiH~v-~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l--~~I~~v 90 (110)
|++|+. |-+|.+.+ ...+...-.+.|..|+.-++--|. +.+.+.. ........... ....-|
T Consensus 338 Y~~~~SDGDN~~~D~--~~~~~ll~~~llp~~~~f~Y~Ei~----~~~~~~~---------~~~~~~~~~~~~~f~~~~i 402 (421)
T PF04285_consen 338 YVFHASDGDNWSSDN--ERCVELLEEELLPVCNYFGYGEIT----QPGRHSS---------WREYEELKESHDNFAMVRI 402 (421)
T ss_pred eeEEcccCccccCCC--HHHHHHHHHHHHHhcCeEEEEEec----cCccchH---------HHHHHHHhhcCCCeEEEEe
Confidence 688887 77887633 222222233677777777777776 1222211 12222222222 334445
Q ss_pred ecChHHHHHHHHHHHH
Q 033840 91 LFTDDIYNVWLKKAKE 106 (110)
Q Consensus 91 ~~~~~~~~~f~~~~~~ 106 (110)
...+++|.+|++.|.+
T Consensus 403 ~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 403 REKEDIYPVFRELFKK 418 (421)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 5566789999998875
No 166
>PF13982 YbfN: YbfN-like lipoprotein
Probab=21.14 E-value=87 Score=18.95 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhc-----CCCEEEEEecCh
Q 033840 29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-----DFKEVHFILFTD 94 (110)
Q Consensus 29 ~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~-----~l~~I~~v~~~~ 94 (110)
+...|+.+|+.|+..++-+- .+-.+.+..+..++.--. .-.+|++.++..
T Consensus 7 eds~lk~aYsaCIntaeG~p----------------eKv~~CqsvLnvlKqek~hq~fa~~EtVrvlDYQ~ 61 (89)
T PF13982_consen 7 EDSKLKQAYSACINTAEGSP----------------EKVEACQSVLNVLKQEKAHQQFASQETVRVLDYQQ 61 (89)
T ss_pred HHHHHHHHHHHHHhhccCCh----------------HHHHHHHHHHHHHHhhHHHHhhhccccchhccHHH
Confidence 45679999999998775321 123344555555544221 235677776654
No 167
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=21.10 E-value=84 Score=18.96 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.5
Q ss_pred ccccCCCccChHHHHHHHHH
Q 033840 56 AISCGVSQYPPDEAATIAIS 75 (110)
Q Consensus 56 ~i~tG~~g~p~~~~a~~~~~ 75 (110)
+|..|.|.++.+..|+-|++
T Consensus 74 aI~~G~Y~vd~~~iA~~ml~ 93 (95)
T TIGR03824 74 AIANGSYKVDAEKIADKLLD 93 (95)
T ss_pred HHHcCCCCCCHHHHHHHHHh
Confidence 56789999999999999876
No 168
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.09 E-value=5.1e+02 Score=22.71 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCceEEe-ccc-----ccCCCc--cChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 033840 34 RSAYKNCLSVGKANNIQYIAF-PAI-----SCGVSQ--YPPDEAATIAISTVKEFANDFKEVHFILFT 93 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~-P~i-----~tG~~g--~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~ 93 (110)
-..++..++.++++|++-|.+ ... .||.+| -+....|+.+++++.++.+....+++.+.+
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~~rs~a~~~~~~~~~~~~~y~~f~~~den 874 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSIAKKIIDSFKKMEKTYPHFILFDEN 874 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCcchhhHHHHHHHHHHHHhhCCceEEEecC
Confidence 445667888899999999986 222 256554 245566778889998887766655554443
No 169
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.08 E-value=3.1e+02 Score=20.40 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=24.8
Q ss_pred eEccCCCCCCceEEEecCCCCCCCCCcHHHHHHHHHHHHHHHH-hCCCceEEe
Q 033840 3 KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGK-ANNIQYIAF 54 (110)
Q Consensus 3 ~iT~~g~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~-~~~~~sIa~ 54 (110)
.+|.++++.|+|=+-...+. ..+....+.+ .+++.... ..+++.|.|
T Consensus 101 ~~t~~Cn~~Cr~C~~~~~~~-~~~~~~~~~~----~~~i~~i~~~~~i~~Vvl 148 (321)
T TIGR03821 101 IVTGGCAINCRYCFRRHFPY-QENQPNKAQW----KEALEYIAQHPEINEVIL 148 (321)
T ss_pred EeCCCcCCcCcCCCCCCcCC-CCCCCCHHHH----HHHHHHHHhcCCCCEEEE
Confidence 47899999998654332222 1111122233 33333333 357888887
No 170
>PLN02869 fatty aldehyde decarbonylase
Probab=21.06 E-value=1.4e+02 Score=24.74 Aligned_cols=39 Identities=5% Similarity=0.202 Sum_probs=31.3
Q ss_pred CCCCCCCC---CcHHHHHHHHHHHHHHHHhCCCceEEecccc
Q 033840 20 GPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAIS 58 (110)
Q Consensus 20 ~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~ 58 (110)
.|.|.-.+ .+.+-+.+-+++++..|+++|.+-+++-++.
T Consensus 365 vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv~sLg~LN 406 (620)
T PLN02869 365 IPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGLLN 406 (620)
T ss_pred eccccccccCchhhhhHHHHHHHHHHHHHhcCCEEEechhcc
Confidence 47765544 2457888999999999999999999998875
No 171
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.94 E-value=3.2e+02 Score=19.53 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCceEEecccccCCC-ccChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 033840 33 LRSAYKNCLSVGKANNIQYIAFPAISCGVS-QYPPDEAATIAISTVKEFANDFKEVHFILF 92 (110)
Q Consensus 33 L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~-g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~ 92 (110)
-.+.++++++.|.+.|.+.|.+.. |.. ..+.+++-+.+.+++.+.++.-..|.+++.
T Consensus 86 sv~~~~~~i~~A~~lga~~vv~H~---G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lE 143 (274)
T TIGR00587 86 SLDVLDEELKRCELLGIMLYNFHP---GSALKCSEEEGLDNLIESLNVVIKETKIVTILLE 143 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECC---CCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 345688999999999999888842 221 224566667777777665543223565554
No 172
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=20.86 E-value=1.4e+02 Score=19.78 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCceEEeccccc-------CC---CccChHHHHHHHHHHHHHHhc--CCCEEEEEecChH----HH
Q 033840 34 RSAYKNCLSVGKANNIQYIAFPAISC-------GV---SQYPPDEAATIAISTVKEFAN--DFKEVHFILFTDD----IY 97 (110)
Q Consensus 34 ~~~~~~~L~~a~~~~~~sIa~P~i~t-------G~---~g~p~~~~a~~~~~~i~~~~~--~l~~I~~v~~~~~----~~ 97 (110)
+..++++.+.|.++++.++.+..-.. +. .-.+.++=. +.++ .++.+.++.|+++ .-
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~--------~~l~~~Gvd~~~~~~F~~~~~~ls~ 93 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKL--------ELLESLGVDYVIVIPFTEEFANLSP 93 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHH--------HHHHHTTESEEEEE-CCCHHCCS-H
T ss_pred HHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHH--------HHHHHcCCCEEEEecchHHHHcCCH
Confidence 35677888899999999988732211 11 112222211 1223 5688999999876 35
Q ss_pred HHHHHH
Q 033840 98 NVWLKK 103 (110)
Q Consensus 98 ~~f~~~ 103 (110)
+.|.+.
T Consensus 94 ~~Fi~~ 99 (157)
T PF06574_consen 94 EDFIEK 99 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 173
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=20.70 E-value=2.5e+02 Score=21.76 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCCceEEEecCCCCC--CCCCcHHHH---HHHHHHHHHHHHhCCCceEE
Q 033840 10 LPVSHVIHTVGPVFN--FHCNPEDIL---RSAYKNCLSVGKANNIQYIA 53 (110)
Q Consensus 10 L~~k~IiH~v~P~~~--~~~~~~~~L---~~~~~~~L~~a~~~~~~sIa 53 (110)
..++.|||++++.-. ...+..+.+ -....+.|+.|.+.|.+-|-
T Consensus 183 ~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~ 231 (436)
T PLN02166 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLL 231 (436)
T ss_pred cCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 468999999975321 111222222 23456888888888865443
No 174
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=20.53 E-value=1.2e+02 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCceEEec
Q 033840 36 AYKNCLSVGKANNIQYIAFP 55 (110)
Q Consensus 36 ~~~~~L~~a~~~~~~sIa~P 55 (110)
.+-++++.|.++|++.|++.
T Consensus 118 ~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 118 NVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 45578889999999999984
No 175
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.47 E-value=3.2e+02 Score=19.23 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHh
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 81 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~ 81 (110)
+.....++.+++.|.+.|.+.|.+|.... ....+.+..-+.+.+.++...
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~~~~~~~~~~~l~~l~ 139 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYDV-YYEEKSEETRQRFIEGLAWAV 139 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCccc-ccccccHHHHHHHHHHHHHHH
Confidence 44566788999999999999999863211 112223444455555555443
No 176
>PRK01060 endonuclease IV; Provisional
Probab=20.36 E-value=3.2e+02 Score=19.27 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEecccccCC--CccChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 033840 31 DILRSAYKNCLSVGKANNIQYIAFPAISCGV--SQYPPDEAATIAISTVKEFANDFKEVHFILFT 93 (110)
Q Consensus 31 ~~L~~~~~~~L~~a~~~~~~sIa~P~i~tG~--~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~ 93 (110)
+.-.+.++++++.|.+.|...|.+- +|. ...+.+++-+.+.+.++..+..-..|++++.+
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h---~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn 146 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFH---PGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLEN 146 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEc---CCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3445678899999999999998882 332 22333445566666666543322235555543
No 177
>PRK00536 speE spermidine synthase; Provisional
Probab=20.31 E-value=2.2e+02 Score=20.76 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHH---HHhCCCceEEecccccCCCccChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHH
Q 033840 36 AYKNCLSV---GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKE 106 (110)
Q Consensus 36 ~~~~~L~~---a~~~~~~sIa~P~i~tG~~g~p~~~~a~~~~~~i~~~~~~l~~I~~v~~~~~~~~~f~~~~~~ 106 (110)
+|...|-. +.-.+-+.|-+ ||.|-+| +++++.+|- .+|.+|..|+++.+..++.+..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLI--iGGGDGg---------~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLI--VDGFDLE---------LAHQLFKYD---THVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEE--EcCCchH---------HHHHHHCcC---CeeEEEECCHHHHHHHHHHCHH
Confidence 55555533 23345677765 7888776 245555552 4999999999999888887664
No 178
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=20.11 E-value=3.7e+02 Score=20.14 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=37.8
Q ss_pred CeeEccCCCCCCceEEEecC-CCCCCCCCcHHHHHHHHHHHHHHHHhCCCceEEecccc
Q 033840 1 MLKECRGFKLPVSHVIHTVG-PVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAIS 58 (110)
Q Consensus 1 ~a~iT~~g~L~~k~IiH~v~-P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~i~ 58 (110)
|+|+|.-|.+.-..+.-++- =.+.++.-- .-...-+..+++.|.+.++--|.||+=|
T Consensus 110 davvtg~g~i~G~pvv~av~df~FmgGSmG-sVvGeki~ra~E~A~e~k~P~v~f~aSG 167 (294)
T COG0777 110 DAVVTGEGTINGLPVVLAVMDFAFMGGSMG-SVVGEKITRAIERAIEDKLPLVLFSASG 167 (294)
T ss_pred cceEEEeeEECCeEEEEEEEeccccccchh-HHHHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 68889888887555544442 223333211 3556667788999999999999887643
Done!