Query 033845
Match_columns 110
No_of_seqs 104 out of 468
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_K B13.6, DNA-directed RNA 100.0 6.4E-51 2.2E-55 286.0 14.0 109 1-109 1-109 (120)
2 3h0g_K DNA-directed RNA polyme 100.0 3.6E-51 1.2E-55 288.4 12.1 109 1-110 1-109 (123)
3 1xpp_A TA1416, DNA-directed RN 100.0 2.2E-39 7.7E-44 226.0 11.6 97 12-109 4-100 (115)
4 2pa8_L DNA-directed RNA polyme 100.0 2.5E-38 8.4E-43 212.9 11.6 89 21-109 3-91 (92)
5 2pa8_D DNA-directed RNA polyme 95.5 0.011 3.8E-07 44.9 3.8 34 18-53 2-35 (265)
6 1twf_C B44.5, DNA-directed RNA 94.6 0.078 2.7E-06 41.8 6.5 54 54-107 202-264 (318)
7 1twf_C B44.5, DNA-directed RNA 94.0 0.024 8.3E-07 44.7 2.4 38 16-55 5-43 (318)
8 1bdf_A RNA polymerase alpha su 93.8 0.038 1.3E-06 41.7 2.9 41 18-60 13-58 (235)
9 2a6h_A DNA-directed RNA polyme 93.6 0.053 1.8E-06 42.7 3.7 38 17-56 9-51 (315)
10 3lu0_A DNA-directed RNA polyme 93.2 0.07 2.4E-06 42.3 3.8 48 54-101 178-231 (329)
11 1bdf_A RNA polymerase alpha su 93.2 0.1 3.5E-06 39.3 4.5 47 56-102 180-232 (235)
12 2a6h_A DNA-directed RNA polyme 92.9 0.14 4.9E-06 40.2 5.1 47 55-101 173-225 (315)
13 3h0g_C DNA-directed RNA polyme 92.7 0.076 2.6E-06 41.6 3.2 36 16-53 4-39 (297)
14 2pa8_D DNA-directed RNA polyme 92.6 0.29 9.9E-06 37.0 6.3 41 68-108 223-263 (265)
15 3h0g_C DNA-directed RNA polyme 92.3 0.11 3.8E-06 40.6 3.7 40 68-107 226-265 (297)
16 3lu0_A DNA-directed RNA polyme 91.9 0.12 4E-06 41.0 3.5 34 27-60 20-58 (329)
17 3ba3_A Protein LP_0091, pyrido 49.4 18 0.00062 24.8 3.7 31 45-76 53-83 (145)
18 3u7z_A Putative metal binding 38.4 59 0.002 21.2 4.7 36 14-49 4-39 (101)
19 4aq4_A SN-glycerol-3-phosphate 38.0 30 0.001 25.5 3.6 26 79-104 391-416 (419)
20 1uct_A Immunoglobulin alpha FC 33.0 19 0.00066 24.8 1.7 23 27-49 188-213 (218)
21 3ljm_A Coil Ser L9C; de novo d 33.0 54 0.0018 16.9 3.9 24 84-107 3-26 (31)
22 1p6f_A NKP46, natural cytotoxi 30.1 11 0.00037 26.8 0.0 13 38-50 228-240 (242)
23 3v26_X ORF3, ORF95, probable s 28.9 98 0.0033 19.6 4.5 35 72-107 60-94 (101)
24 1c1y_B Proto-onkogene serine/t 28.2 49 0.0017 20.8 2.9 20 73-92 14-33 (77)
25 2qn6_B Translation initiation 26.4 56 0.0019 20.9 3.0 40 58-100 44-83 (93)
26 2l05_A Serine/threonine-protei 25.7 56 0.0019 21.4 2.9 19 74-92 31-49 (95)
27 3tqm_A Ribosome-associated fac 25.1 1.2E+02 0.0041 18.7 4.4 34 72-106 60-93 (96)
28 2wkb_A Macrophage migration in 24.6 1.4E+02 0.0048 19.0 4.8 26 71-96 1-28 (125)
29 4ano_A ESSB; membrane protein, 23.9 10 0.00035 28.1 -1.1 61 25-88 20-80 (219)
30 2plg_A TLL0839 protein; hypoth 23.9 1.9E+02 0.0065 20.3 7.2 98 8-109 50-153 (163)
31 3cra_A Protein MAZG; tandem-re 23.6 1.1E+02 0.0038 23.2 4.6 27 80-106 211-237 (265)
32 1t4b_A Aspartate-semialdehyde 23.2 2.6E+02 0.0089 21.6 6.9 55 37-92 235-296 (367)
33 2al3_A TUG long isoform; TUG U 23.1 73 0.0025 20.5 3.0 23 72-94 21-43 (90)
34 3dhx_A Methionine import ATP-b 22.8 79 0.0027 20.0 3.2 38 29-66 65-102 (106)
35 3ezx_A MMCP 1, monomethylamine 22.4 1.8E+02 0.0061 20.6 5.4 37 28-64 93-131 (215)
36 2xcz_A Possible ATLS1-like lig 22.3 1.4E+02 0.0049 18.5 4.4 26 71-96 2-28 (115)
37 1yz7_A Probable translation in 21.7 2.2E+02 0.0076 20.2 5.9 46 52-100 121-166 (188)
38 2atz_A H. pylori predicted cod 21.1 1.2E+02 0.0041 21.9 4.1 75 28-109 71-146 (180)
39 3ny5_A Serine/threonine-protei 20.9 79 0.0027 20.7 2.9 19 74-92 27-45 (96)
40 1wxm_A A-RAF proto-oncogene se 20.4 65 0.0022 20.6 2.3 19 74-92 21-39 (86)
41 2x4k_A 4-oxalocrotonate tautom 20.2 1.1E+02 0.0039 16.3 4.3 25 71-95 4-30 (63)
No 1
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=6.4e-51 Score=286.01 Aligned_cols=109 Identities=43% Similarity=0.698 Sum_probs=108.0
Q ss_pred CCCCccccceecCCCceeeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCC
Q 033845 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (110)
Q Consensus 1 mn~p~~~~~~~l~~~~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (110)
||||||||+|+|+||++|+++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++
T Consensus 1 mnap~~~e~f~l~~ge~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (120)
T 1twf_K 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG 80 (120)
T ss_dssp CCSCCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTT
T ss_pred CCCCCccceeecCCCCceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033845 81 SSPMQAYNQAINDLDKELDTLKSAFEVKH 109 (110)
Q Consensus 81 ~~P~~al~~a~~~l~~~~~~l~~~f~~~~ 109 (110)
.+|.+||++|+++|++.|++++++|+++|
T Consensus 81 ~~p~eaL~~a~~~L~~~~~~l~~~f~~e~ 109 (120)
T 1twf_K 81 YDPKDALKNACNSIINKLGALKTNFETEW 109 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977
No 2
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-51 Score=288.40 Aligned_cols=109 Identities=45% Similarity=0.676 Sum_probs=107.6
Q ss_pred CCCCccccceecCCCceeeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCC
Q 033845 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (110)
Q Consensus 1 mn~p~~~~~~~l~~~~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (110)
||||||||+|+| ||++||++.+|++++|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++
T Consensus 1 mnap~~~e~f~l-~ge~Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~ 79 (123)
T 3h0g_K 1 MNQPERYELIEL-MGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVED 79 (123)
T ss_dssp CCCCCGGGTSSC-SSCCSCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSS
T ss_pred CCCCCccceeEe-CCCcceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 033845 81 SSPMQAYNQAINDLDKELDTLKSAFEVKHL 110 (110)
Q Consensus 81 ~~P~~al~~a~~~l~~~~~~l~~~f~~~~~ 110 (110)
.+|++||++|+++|++.|+++++.|++||.
T Consensus 80 ~~p~eaL~~al~~L~~~~~~l~~~F~~~~~ 109 (123)
T 3h0g_K 80 CSPKQVIVDAAKSLITHLEEIKVNFMREWE 109 (123)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999983
No 3
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=100.00 E-value=2.2e-39 Score=225.96 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=90.2
Q ss_pred cCCCceeeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHH
Q 033845 12 VPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91 (110)
Q Consensus 12 l~~~~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~ 91 (110)
-++|++|+++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+|+. |.+||++|+
T Consensus 4 ~~~~~~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p~eaL~~al 82 (115)
T 1xpp_A 4 QRERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAV 82 (115)
T ss_dssp -----CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-HHHHHHHHH
T ss_pred ccccccceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-hHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 033845 92 NDLDKELDTLKSAFEVKH 109 (110)
Q Consensus 92 ~~l~~~~~~l~~~f~~~~ 109 (110)
++|++.|+++++.|++++
T Consensus 83 ~~L~~~~~~l~~~f~~a~ 100 (115)
T 1xpp_A 83 RKLSKLYEDLGTQFQKEF 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 4
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=100.00 E-value=2.5e-38 Score=212.88 Aligned_cols=89 Identities=31% Similarity=0.392 Sum_probs=84.6
Q ss_pred eeecCCCcceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 033845 21 YERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDT 100 (110)
Q Consensus 21 ~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~ 100 (110)
+..+++.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++.+|.+||++|+++|++.|++
T Consensus 3 ikvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~ 82 (92)
T 2pa8_L 3 IRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSH 82 (92)
T ss_dssp EEEEEEETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 34446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 033845 101 LKSAFEVKH 109 (110)
Q Consensus 101 l~~~f~~~~ 109 (110)
++++|+++.
T Consensus 83 ~~~~f~~~~ 91 (92)
T 2pa8_L 83 YIDEIKGLT 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=95.49 E-value=0.011 Score=44.89 Aligned_cols=34 Identities=9% Similarity=-0.069 Sum_probs=26.5
Q ss_pred eeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcC
Q 033845 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD 53 (110)
Q Consensus 18 Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~ 53 (110)
+|++... .++.++|.+.|-|+||||+||-.|+..
T Consensus 2 ~i~i~~~--~~~~~~f~l~g~~~t~~NalRRills~ 35 (265)
T 2pa8_D 2 SINLLHK--DDTRIDLVFEGYPLEFVNAIRRASMLY 35 (265)
T ss_dssp CEEEEEE--CSSEEEEEEESSCHHHHHHHHHHHHHS
T ss_pred eEEEEEc--CCCEEEEEEeCCCHHHHHHHHHHHHHc
Confidence 3455543 478899999999999999999888874
No 6
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=94.65 E-value=0.078 Score=41.76 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCeeeeeeeCCC---------CCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033845 54 ENVLFAGYKLPH---------PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEV 107 (110)
Q Consensus 54 ~~V~fAgY~vpH---------Pl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
+-|.-+.|.++- .-.+++.|.|-|+|+.+|.+||.+|++-|.+.|+.|.+.+..
T Consensus 202 ~pv~~v~~~ve~~~~~rv~~~~d~dkfif~VET~Gsi~Peeav~~A~kIL~~kl~~f~~~l~~ 264 (318)
T 1twf_C 202 PQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQ 264 (318)
T ss_dssp CCCGGGTTSCCCCSSSCCCTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeEEecccccccccccccCCEEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666642 123689999999999999999999999999999999988764
No 7
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=94.02 E-value=0.024 Score=44.68 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=30.1
Q ss_pred ceeeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcC-CC
Q 033845 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD-EN 55 (110)
Q Consensus 16 ~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~-~~ 55 (110)
..+|++.. ..++.++|.+.|-|+||||+||-.|+.. |.
T Consensus 5 ~p~I~i~~--~~~~~~kF~leG~~~tlaNALRRiLLSevPg 43 (318)
T 1twf_C 5 GPQVKIRE--ASKDNVDFILSNVDLAMANSLRRVMIAEIPT 43 (318)
T ss_dssp SSBCCCSC--CCSSEECCEEBSSCHHHHHHHHHHHHHCCCE
T ss_pred CCeEEEEE--ecCCEEEEEEEccChhHHHHHHHHHHHcCcc
Confidence 34455554 4688999999999999999999999874 44
No 8
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=93.75 E-value=0.038 Score=41.72 Aligned_cols=41 Identities=29% Similarity=0.281 Sum_probs=31.0
Q ss_pred eeEeeecCCCcceeEEEEc----cCCcchHHHHHHHHhcC-CCeeeee
Q 033845 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHRD-ENVLFAG 60 (110)
Q Consensus 18 Ki~~~~~~k~~n~~~~~i~----~EDHTlgNlLr~~L~~~-~~V~fAg 60 (110)
+|++.. ..++.++|.+. |-++|+||+||-.|+.. |+.-.-+
T Consensus 13 ~i~i~~--~~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~ 58 (235)
T 1bdf_A 13 LVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTE 58 (235)
T ss_dssp EEEEEE--SSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred eEEEEE--ccCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEE
Confidence 366655 35788999995 99999999999999884 6544433
No 9
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=93.64 E-value=0.053 Score=42.66 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=29.8
Q ss_pred eeeEeeecCCCcceeEEEE----ccCCcchHHHHHHHHhcC-CCe
Q 033845 17 KKVSYERDTKIINAASFTI----EREEHTIGNILRMQLHRD-ENV 56 (110)
Q Consensus 17 ~Ki~~~~~~k~~n~~~~~i----~~EDHTlgNlLr~~L~~~-~~V 56 (110)
++|++... .++.++|.+ .|-++|+||+||-.|+.. |+.
T Consensus 9 p~i~i~~~--~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~ 51 (315)
T 2a6h_A 9 PVFTVRTQ--GREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGT 51 (315)
T ss_dssp CEEEEEEE--TTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEc--cCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCce
Confidence 34565543 588999999 499999999999999985 543
No 10
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=93.23 E-value=0.07 Score=42.33 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=38.4
Q ss_pred CCeeeeeeeCC-----CCC-CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033845 54 ENVLFAGYKLP-----HPL-QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (110)
Q Consensus 54 ~~V~fAgY~vp-----HPl-~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l 101 (110)
.=|.-+.|.|. ... .++..|-|.|+|+++|.+||..|++-|++.+.-|
T Consensus 178 sPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f 231 (329)
T 3lu0_A 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 (329)
T ss_dssp CCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTS
T ss_pred CceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44666778664 333 4899999999999999999999999998876544
No 11
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=93.22 E-value=0.1 Score=39.32 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=38.0
Q ss_pred eeeeeeeCCCC------CCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033845 56 VLFAGYKLPHP------LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102 (110)
Q Consensus 56 V~fAgY~vpHP------l~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~ 102 (110)
|.-+.|+++-. -.++..|.|-|+|+.+|.+||.+|++-|.+.|+.|.
T Consensus 180 v~~v~y~ve~~~v~~~~~~d~li~eIeT~Gsi~P~eal~~A~~iL~~~~~~f~ 232 (235)
T 1bdf_A 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (235)
T ss_dssp EEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred EEEEEEEccCccccccccCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45577776422 236899999999999999999999999999887664
No 12
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=92.95 E-value=0.14 Score=40.19 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=38.2
Q ss_pred CeeeeeeeCCC------CCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033845 55 NVLFAGYKLPH------PLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (110)
Q Consensus 55 ~V~fAgY~vpH------Pl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l 101 (110)
.|.-+.|.+.- .-.+++.|.|-|+|+.+|.+||.+|++-|.+.|..|
T Consensus 173 pv~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f 225 (315)
T 2a6h_A 173 PVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYF 225 (315)
T ss_dssp CEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred CceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35556776531 234789999999999999999999999999998877
No 13
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.65 E-value=0.076 Score=41.55 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=29.4
Q ss_pred ceeeEeeecCCCcceeEEEEccCCcchHHHHHHHHhcC
Q 033845 16 TKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD 53 (110)
Q Consensus 16 ~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~L~~~ 53 (110)
.++|++.. ..++.++|.+.|-|.||||+||-.|+..
T Consensus 4 ~p~I~i~~--~~~~~~~F~l~g~~~tiaNALRRiLLSe 39 (297)
T 3h0g_C 4 ETHITIRN--ISKNSVDFVLTNTSLAVANSLRRVVLAE 39 (297)
T ss_dssp CCSBCCCC--BCSSEEEEEECSCCHHHHHHHHHHHHSS
T ss_pred CCeEEEEE--ccCCEEEEEEECCChhHHHHHHHHHHHc
Confidence 45566665 4668999999999999999999999884
No 14
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=92.56 E-value=0.29 Score=36.96 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=37.0
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033845 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEVK 108 (110)
Q Consensus 68 ~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~~~ 108 (110)
.++..+.|.|+|..+|.+++.+|++-|.+.++.|.+.+...
T Consensus 223 ~d~~i~~VEt~Gsl~Pee~v~~A~~iL~~~~~~~~~~l~~~ 263 (265)
T 2pa8_D 223 EDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEV 263 (265)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999988764
No 15
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.29 E-value=0.11 Score=40.65 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033845 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEV 107 (110)
Q Consensus 68 ~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
.+++.|.|.|+|+.+|.+++.+|++-|.+.++.|.+.++.
T Consensus 226 ~dkfif~VET~Gsl~p~eiv~~A~~iL~~kl~~f~~~L~~ 265 (297)
T 3h0g_C 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265 (297)
T ss_dssp CCCEEEEEEBCSSSCTTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999988764
No 16
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=91.90 E-value=0.12 Score=41.02 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=28.3
Q ss_pred CcceeEEEEc----cCCcchHHHHHHHHhcC-CCeeeee
Q 033845 27 IINAASFTIE----REEHTIGNILRMQLHRD-ENVLFAG 60 (110)
Q Consensus 27 ~~n~~~~~i~----~EDHTlgNlLr~~L~~~-~~V~fAg 60 (110)
.++.+.|.+. |-++|+||+||-.|+.. |+.-.-+
T Consensus 20 ~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~ 58 (329)
T 3lu0_A 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 (329)
T ss_dssp TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEE
T ss_pred CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEE
Confidence 6889999998 99999999999999984 6543333
No 17
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=49.37 E-value=18 Score=24.84 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCeeeeeeeCCCCCCcceEEEEE
Q 033845 45 ILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76 (110)
Q Consensus 45 lLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIq 76 (110)
---.+|.++|+|.+++|.-.-+- +..+||++
T Consensus 53 ~k~~ql~~Np~V~i~~~~~d~~~-~~~~IRi~ 83 (145)
T 3ba3_A 53 PALKVYDQNPDIAFITIPNDGTA-GNPYLRAQ 83 (145)
T ss_dssp THHHHHTTCCEEEEEEEECTTCT-TCCEEEEE
T ss_pred HHHHHHHhCCCEEEEEECCCCCc-cceEEEEE
Confidence 34578899999999999754332 46777776
No 18
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=38.39 E-value=59 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCceeeEeeecCCCcceeEEEEccCCcchHHHHHHH
Q 033845 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQ 49 (110)
Q Consensus 14 ~~~~Ki~~~~~~k~~n~~~~~i~~EDHTlgNlLr~~ 49 (110)
.|+++|++.-........+|.+.-+..||+.+|...
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~ 39 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESE 39 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHT
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHc
Confidence 578888888877777788888988889999998653
No 19
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=38.02 E-value=30 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033845 79 SQSSPMQAYNQAINDLDKELDTLKSA 104 (110)
Q Consensus 79 ~~~~P~~al~~a~~~l~~~~~~l~~~ 104 (110)
|+.+|.+||+++.+.+.+.++.+.+.
T Consensus 391 g~~t~e~al~~~~~~~~~~L~~y~k~ 416 (419)
T 4aq4_A 391 GKKTPQQALDTAVERGNQLLRRFEKS 416 (419)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688888887777666666555443
No 20
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=33.02 E-value=19 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=6.6
Q ss_pred CcceeEEEEcc---CCcchHHHHHHH
Q 033845 27 IINAASFTIER---EEHTIGNILRMQ 49 (110)
Q Consensus 27 ~~n~~~~~i~~---EDHTlgNlLr~~ 49 (110)
..+.+++.+.| -|+|.+|++|..
T Consensus 188 ~S~~~~l~V~g~~~~~~t~~n~~~~~ 213 (218)
T 1uct_A 188 PSNALELVVTDSIHQDYTTQNLILEH 213 (218)
T ss_dssp CCCCEEEEEC----------------
T ss_pred CCCcEEEEEecCCCcCCChhhhhhhh
Confidence 34567777766 589999999874
No 21
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.00 E-value=54 Score=16.86 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033845 84 MQAYNQAINDLDKELDTLKSAFEV 107 (110)
Q Consensus 84 ~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
-+||++-|..|.+.++.++++++.
T Consensus 3 wealekkcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888898888888887753
No 22
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=30.07 E-value=11 Score=26.82 Aligned_cols=13 Identities=54% Similarity=0.711 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHH
Q 033845 38 EEHTIGNILRMQL 50 (110)
Q Consensus 38 EDHTlgNlLr~~L 50 (110)
.|||++||||..|
T Consensus 228 ~~~~~~nl~r~~~ 240 (242)
T 1p6f_A 228 WDHTAQNLLRMGL 240 (242)
T ss_dssp -------------
T ss_pred ccchheeeeEEEe
Confidence 4999999998765
No 23
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=28.95 E-value=98 Score=19.55 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033845 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEV 107 (110)
Q Consensus 72 ~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~~ 107 (110)
.|++.-.+. +...|+..|++.|...+...++++..
T Consensus 60 ~l~ae~~~~-d~yaAID~a~dkLerQLrK~K~k~~~ 94 (101)
T 3v26_X 60 EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLKQ 94 (101)
T ss_dssp CEEEEECCS-SSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecC-CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466665544 88999999999999999999988764
No 24
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.22 E-value=49 Score=20.78 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=16.9
Q ss_pred EEEEeCCCCCHHHHHHHHHH
Q 033845 73 VRIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 73 lrIqT~~~~~P~~al~~a~~ 92 (110)
=+|+..+|.+..+||.+|++
T Consensus 14 T~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 14 TVVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEEECCTTCBHHHHHHHHHH
T ss_pred EEEEecCCcCHHHHHHHHHH
Confidence 35777889999999999986
No 25
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=26.41 E-value=56 Score=20.87 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=25.0
Q ss_pred eeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 033845 58 FAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDT 100 (110)
Q Consensus 58 fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~ 100 (110)
.-=|.|-=|+ -.|++++..-....++|++|++.+.+.++.
T Consensus 44 vkI~~vgaP~---Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~ 83 (93)
T 2qn6_B 44 IKIYTIGAPR---YRVDVVGTNPKEASEALNQIISNLIKIGKE 83 (93)
T ss_dssp EEEEESSTTE---EEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCe---EEEEEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444 566666654335567788888877776654
No 26
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.69 E-value=56 Score=21.36 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=16.4
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033845 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~P~~al~~a~~ 92 (110)
+|+..+|.+..+||.+|++
T Consensus 31 ~V~VrpG~tlrdAL~KaLk 49 (95)
T 2l05_A 31 VVPARCGVTVRDSLKKALM 49 (95)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 5777789999999999986
No 27
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=25.08 E-value=1.2e+02 Score=18.67 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033845 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 72 ~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
.|++...+. +...|+..|++.|...+...+++..
T Consensus 60 ~l~a~~~~~-d~y~Aid~a~dklerqL~k~k~k~~ 93 (96)
T 3tqm_A 60 TINAQAESD-DMYKTVDLLMHKLETQLSKYKAKKG 93 (96)
T ss_dssp EEEEEECCS-CHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred EEEEEEecC-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666544 8999999999999999888776553
No 28
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.59 E-value=1.4e+02 Score=19.04 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=16.6
Q ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHHH
Q 033845 71 IIVRIHTTSQSSP--MQAYNQAINDLDK 96 (110)
Q Consensus 71 ~~lrIqT~~~~~P--~~al~~a~~~l~~ 96 (110)
|.++|+|..+.++ .++|.+++.++..
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala 28 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAIS 28 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHH
Confidence 4688999877666 3555555554443
No 29
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=23.95 E-value=10 Score=28.06 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=52.4
Q ss_pred CCCcceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHH
Q 033845 25 TKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88 (110)
Q Consensus 25 ~k~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~ 88 (110)
.+ ++..+++|..++--+-+.+...|+..++--| ...|. -.++.+.|..+...+..|.+.++
T Consensus 20 ~k-~~~~~~~l~ks~ik~~~~~e~~lL~~~~~~f-~~~I~-~~eD~~~i~y~~~~~~~~f~~i~ 80 (219)
T 4ano_A 20 IN-DQPYTVIFQRAKLKMQDPLELEVLKEVDPCI-VRDID-VSEDEVKVVIKPPSSFLTFAAIR 80 (219)
T ss_dssp EE-ETTEEEEEEGGGCCCCSGGGGGGGGGSCSSS-EEEEE-ECSSEEEEEEECCTTCEEHHHHH
T ss_pred ec-CCeEEEEEEHHHhccCCHHHHHHHhccCCCC-CeEEE-EeCCEEEEEEEcCcccCcHHHHH
Confidence 45 7789999999999999999999999999889 88877 67899999999987667776663
No 30
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=23.94 E-value=1.9e+02 Score=20.29 Aligned_cols=98 Identities=10% Similarity=0.018 Sum_probs=61.7
Q ss_pred cceecCCCceeeEeeecC-CCcceeEEEE---ccCCcchHHHHHHHHhcCCC-eeeeeeeCCCCCCcceEEEE-EeCCCC
Q 033845 8 ERFVVPEGTKKVSYERDT-KIINAASFTI---EREEHTIGNILRMQLHRDEN-VLFAGYKLPHPLQYKIIVRI-HTTSQS 81 (110)
Q Consensus 8 ~~~~l~~~~~Ki~~~~~~-k~~n~~~~~i---~~EDHTlgNlLr~~L~~~~~-V~fAgY~vpHPl~~~~~lrI-qT~~~~ 81 (110)
.++.+..|+-.|-+.... ...+.+++.. ....--..-++|..|..|-. -.-|.|-+.. +.+++.- .+-++.
T Consensus 50 ~~W~~~~GSveV~V~l~g~~d~~~L~V~SPV~~lP~~~~~~l~~~LLE~N~~~t~~arFaI~~---n~V~~v~~r~ls~L 126 (163)
T 2plg_A 50 KIWMFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIAE---EQVQVVASRTLGGI 126 (163)
T ss_dssp EEEEEEETTEEEEEEECCSSTTCEEEEEEEEEESCCTTHHHHHHHHHHHTTTTTTTCEEEEET---TEEEEEEEEECTTC
T ss_pred CceEEEECCEEEEEEecCCCCCCEEEEEEEeccCchhhHHHHHHHHHHhccccccceEEEEEC---CEEEEEEEEEcccC
Confidence 445555566555555442 2333333322 22123467788888888755 3345677764 5555544 445778
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033845 82 SPMQAYNQAINDLDKELDTLKSAFEVKH 109 (110)
Q Consensus 82 ~P~~al~~a~~~l~~~~~~l~~~f~~~~ 109 (110)
+| +-+..|+..+....+++-+++..+|
T Consensus 127 d~-~E~~~aIt~V~~lAD~~Dd~L~~~f 153 (163)
T 2plg_A 127 TA-GEISRLITIVATLADDYDDALRAEF 153 (163)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 5569999999999999998888877
No 31
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=23.58 E-value=1.1e+02 Score=23.22 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033845 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 80 ~~~P~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
+++|..||+.|..+....|..+++...
T Consensus 211 gIDpE~ALr~an~KF~~Rf~~~E~~~~ 237 (265)
T 3cra_A 211 GTKAEIALQKANEKFERRFREVERIVA 237 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999987764
No 32
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=23.24 E-value=2.6e+02 Score=21.57 Aligned_cols=55 Identities=7% Similarity=-0.151 Sum_probs=41.3
Q ss_pred cCCcc-----hHHHHHHHHh--cCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHH
Q 033845 37 REEHT-----IGNILRMQLH--RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 37 ~EDHT-----lgNlLr~~L~--~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~~ 92 (110)
+..|| +.+-++..|- ..-.|.|...+||-+--.-.-+.++++...++ +.++++++
T Consensus 235 ~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~-eei~~~l~ 296 (367)
T 1t4b_A 235 DNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSI-PTVEELLA 296 (367)
T ss_dssp TTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCH-HHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCH-HHHHHHHH
Confidence 44566 8889998875 34479999999999988889999999877665 44445444
No 33
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.12 E-value=73 Score=20.47 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Q 033845 72 IVRIHTTSQSSPMQAYNQAINDL 94 (110)
Q Consensus 72 ~lrIqT~~~~~P~~al~~a~~~l 94 (110)
..+|++.++....++|++||+..
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~ 43 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQ 43 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHh
Confidence 45567777778899999999853
No 34
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=22.83 E-value=79 Score=20.03 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=29.5
Q ss_pred ceeEEEEccCCcchHHHHHHHHhcCCCeeeeeeeCCCC
Q 033845 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66 (110)
Q Consensus 29 n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vpHP 66 (110)
-...+.+.|++--+..++.+.-.+.=.|+..||...|-
T Consensus 65 G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~~ 102 (106)
T 3dhx_A 65 GIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEHH 102 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC--
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeecc
Confidence 34567778888888888888777788899999998873
No 35
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.44 E-value=1.8e+02 Score=20.64 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=26.4
Q ss_pred cceeEEEEccCCcchHHHHHHHHhcCCC--eeeeeeeCC
Q 033845 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (110)
Q Consensus 28 ~n~~~~~i~~EDHTlgNlLr~~L~~~~~--V~fAgY~vp 64 (110)
+.-+..++.||-|.+|-.+...+++..+ |.+-|-.+|
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 131 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVL 131 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCC
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCC
Confidence 3445667789999999999998888754 334454444
No 36
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.33 E-value=1.4e+02 Score=18.50 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=16.2
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHH
Q 033845 71 IIVRIHTTSQSSP-MQAYNQAINDLDK 96 (110)
Q Consensus 71 ~~lrIqT~~~~~P-~~al~~a~~~l~~ 96 (110)
|.++|+|..+.++ .++|.+++.++..
T Consensus 2 P~i~i~~~~~~~~~~~~l~~~~~~~l~ 28 (115)
T 2xcz_A 2 PLINIQASVPAVADANSLLQELSSKLA 28 (115)
T ss_dssp CEEEEEESSCCCTTHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhHHHHHHHHHHHHH
Confidence 5678888766555 5666666555443
No 37
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=21.75 E-value=2.2e+02 Score=20.25 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=29.9
Q ss_pred cCCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 033845 52 RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDT 100 (110)
Q Consensus 52 ~~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~ 100 (110)
..+++..-=|.|-=|+ -.|+++|..-....++|++|++.+.+.+..
T Consensus 121 ~~~~~~ikI~lvgaP~---Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~ 166 (188)
T 1yz7_A 121 KEKDVEVKFTYLGAPR---YRIDITAPDYYKAEEVLESIAEEILRVIKE 166 (188)
T ss_dssp TSTTCEEEEEECSTTE---EEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEcCcE---EEEEEeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456655555565554 566777764445678888888888877654
No 38
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=21.07 E-value=1.2e+02 Score=21.89 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=50.7
Q ss_pred cceeEEEEccCCcchHHHHHHHHhc-CCCeeeeeeeCCCCCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033845 28 INAASFTIEREEHTIGNILRMQLHR-DENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106 (110)
Q Consensus 28 ~n~~~~~i~~EDHTlgNlLr~~L~~-~~~V~fAgY~vpHPl~~~~~lrIqT~~~~~P~~al~~a~~~l~~~~~~l~~~f~ 106 (110)
-+.+.|.-.|.++-..--....|++ ..-+.|.+|.-.||= ...+.|+.. -++ |.+|++-....-..|..+.-
T Consensus 71 veniVfdYnG~~pErF~hraqlLlReeGfinftaY~tKtpg--hlhlyIhkg--htt---L~E~~ql~~~lS~kLa~klp 143 (180)
T 2atz_A 71 VENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPG--HLHLYVHKG--HTE---LGEGERLVKTLSMKLAQGLP 143 (180)
T ss_dssp ESCEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEEECSSTT--CEEEEECCC--SEE---HHHHHHHHHHHHHHHHTTSC
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHHHhCcceeEeeccCCCC--eEEEEEecC--Ccc---HHHHHHHHHHHHHHHHhhCc
Confidence 3568888899998776666666665 566789999999984 477777743 233 55666555555555555555
Q ss_pred hhh
Q 033845 107 VKH 109 (110)
Q Consensus 107 ~~~ 109 (110)
.+|
T Consensus 144 keW 146 (180)
T 2atz_A 144 KEW 146 (180)
T ss_dssp CCE
T ss_pred cce
Confidence 555
No 39
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=20.86 E-value=79 Score=20.66 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=16.2
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033845 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~P~~al~~a~~ 92 (110)
.|+..+|.+..+||.+|++
T Consensus 27 ~V~VrpG~tlrdaL~KaLk 45 (96)
T 3ny5_A 27 VVPARCGVTVRDSLKKALM 45 (96)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4677789999999999986
No 40
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.44 E-value=65 Score=20.65 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=16.2
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033845 74 RIHTTSQSSPMQAYNQAIN 92 (110)
Q Consensus 74 rIqT~~~~~P~~al~~a~~ 92 (110)
+|+..+|.+..+||.+|++
T Consensus 21 ~V~VrpG~tlrdaL~KaLk 39 (86)
T 1wxm_A 21 VVTVRDGMSVYDSLDKALK 39 (86)
T ss_dssp EEECCSSCBSHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4677789999999999986
No 41
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.20 E-value=1.1e+02 Score=16.28 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=14.4
Q ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHH
Q 033845 71 IIVRIHTTSQSSP--MQAYNQAINDLD 95 (110)
Q Consensus 71 ~~lrIqT~~~~~P--~~al~~a~~~l~ 95 (110)
+.++|++.++.++ +++|.+++.++.
T Consensus 4 P~i~i~~~~g~s~e~k~~l~~~l~~~l 30 (63)
T 2x4k_A 4 PIVNVKLLEGRSDEQLKNLVSEVTDAV 30 (63)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 5677777666666 344555544443
Done!