Citrus Sinensis ID: 033850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccEccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mapkqpntglfvglnkghvvtkkelpprpsdrkgktskrVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSaggaekkk
Flexible Loop (DISEMBL)
mapkqpntglfvglnkghvvtkkelpprpsdrkgktskrvhfVKNLirevagfapyerRITEllkvgkdkralkvakrklgthkrakkkreemsnalrkmrsaggaekkk
Low Complexity Region (SEG)
MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK
Disordered region (IsUnstruct)
*********LFVGLN************************VHFVKNLIREVAGFAPYERRITELLKVGKD*****************************************
Disordered Region (DISOPRED)
*****PNTGLFVGLNKGHVV*********************FVKNLIREVAGFAPYERRITELL*********KVAKRKLGTHKRA************************
Disordered Region (DISEMBL)
MAPKQPNTGLFVGLNKGHVVTKKELP***********KRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKR********************************
Disordered Region (DISPRO)
******NTGLFVGLNKGHVVTK*************TSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTxxxxxxxxxxxxxxxxxxxxxGGAEKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9LZ57	108	60S ribosomal protein L36	yes	no	0.936	0.953	0.828	1e-41
Q9M352	112	60S ribosomal protein L36	no	no	1.0	0.982	0.785	1e-41
O80929	113	60S ribosomal protein L36	no	no	0.9	0.876	0.838	2e-41
P52866	106	60S ribosomal protein L36	N/A	no	0.809	0.839	0.808	3e-36
Q9LRB8	101	60S ribosomal protein L36	N/A	no	0.890	0.970	0.683	7e-30
Q4PM12	110	60S ribosomal protein L36	N/A	no	0.909	0.909	0.62	2e-26
Q92365	99	60S ribosomal protein L36	yes	no	0.890	0.989	0.582	2e-26
O94658	99	60S ribosomal protein L36	yes	no	0.890	0.989	0.572	3e-25
Q5RAZ9	105	60S ribosomal protein L36	yes	no	0.854	0.895	0.608	9e-25
Q9Y3U8	105	60S ribosomal protein L36	yes	no	0.854	0.895	0.608	9e-25

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 97/105 (92%), Gaps = 2/105 (1%)

Query: 8   TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
           TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR  F++NLI+EVAG APYE+RITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRS--AGGAEKKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS  AG +EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 96/112 (85%), Gaps = 2/112 (1%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           M   Q  TGLFVGLNKGHVVT++EL PRP  RKGKTSKR  F++NLI+EVAG APYE+RI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA--EKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

Arabidopsis thaliana (taxid: 3702)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 91/99 (91%)

Query: 8   TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
           TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR  F++ LIREVAG APYE+RITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA 106
           KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GGA
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGA 106

Arabidopsis thaliana (taxid: 3702)

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 81/89 (91%)

Query: 1  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
          MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKR HFV+NLIREVAGF PYE+RI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKK 89
          TELLKVGKDKRALKV + K+G  + +K++
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESKEE 89

Daucus carota (taxid: 4039)

>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 78/98 (79%)

Query: 10  LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKD 69
           + VGLNKGH VTKK   PRPS RKG  S+RV  V+ ++REVAG+APYERR+ ELLKVGKD
Sbjct: 4   IAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKD 63

Query: 70  KRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAE 107
           KRALK+ KRKLGTH R KKKREEM+  LRKM++A   E
Sbjct: 64  KRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

Enteromorpha compressa (taxid: 63659)

>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 72/100 (72%)

Query: 10  LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKD 69
           L VGL KGH VTK E  PRPS RKG  SK   FV++LIREV GFAP+ERR  ELLKV KD
Sbjct: 7   LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKD 66

Query: 70  KRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
           KRALK  K++LGTH R K+KR+E+SN L   R A   ++K
Sbjct: 67  KRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106

Ixodes scapularis (taxid: 6945)

>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36a PE=3 SV=2

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 80/103 (77%), Gaps = 5/103 (4%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAP     GL VGLNKG V+TK++LP RPS RKG+ SKR  FV++++REVAGFAPYERR+
Sbjct: 1   MAP-----GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRV 55

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
            EL++  +DKRA K+AK++LGT KRAK K EE+++ ++  R A
Sbjct: 56  MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36b PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 78/103 (75%), Gaps = 5/103 (4%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAP     GL VGLNKG  +TK++LP RPS RKG  SKR  FV++++REVAGFAPYERR+
Sbjct: 1   MAP-----GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRV 55

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
            EL++  +DKRA K+AK++LGT KRAK K EE+++ ++  R A
Sbjct: 56  MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 3/97 (3%)

Query: 1  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
          MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct: 1  MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
           ELLKV KDKRALK  K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94

Pongo abelii (taxid: 9601)

>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 3/97 (3%)

Query: 1  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
          MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct: 1  MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
           ELLKV KDKRALK  K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
197312875	110	ribosomal protein L36 [Rheum australe]	1.0	1.0	0.927	4e-51
297745282	145	unnamed protein product [Vitis vinifera]	1.0	0.758	0.927	1e-50
225464487	110	PREDICTED: 60S ribosomal protein L36-3 i	1.0	1.0	0.927	1e-50
225454218	110	PREDICTED: 60S ribosomal protein L36-3 [	1.0	1.0	0.927	2e-50
224079093	110	predicted protein [Populus trichocarpa]	1.0	1.0	0.927	2e-50
224116904	110	predicted protein [Populus trichocarpa]	1.0	1.0	0.909	6e-50
356574026	110	PREDICTED: 60S ribosomal protein L36-3 [	1.0	1.0	0.909	1e-49
224137042	110	predicted protein [Populus trichocarpa]	1.0	1.0	0.918	1e-49
356535863	110	PREDICTED: 60S ribosomal protein L36-3-l	1.0	1.0	0.909	3e-49
388509878	111	unknown [Lotus japonicus]	1.0	0.990	0.909	3e-49

>gi|197312875|gb|ACH63218.1| ribosomal protein L36 [Rheum australe]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 108/110 (98%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQP++GLFVGLNKGH+VTKKELP +PSDRKGKTSKRVHFV+NLIREVAGFAPYE+RI
Sbjct: 1   MAPKQPSSGLFVGLNKGHIVTKKELPAKPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN LRKMRSAGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGAEKKK 110

Source: Rheum australe

Species: Rheum australe

Genus: Rheum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745282|emb|CBI40362.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 106/110 (96%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFV+N+IREVAGFAPYE+RI
Sbjct: 36  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRI 95

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+ LRKMRS G  EKKK
Sbjct: 96  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464487|ref|XP_002268801.1| PREDICTED: 60S ribosomal protein L36-3 isoform 2 [Vitis vinifera] gi|225464489|ref|XP_002268754.1| PREDICTED: 60S ribosomal protein L36-3 isoform 1 [Vitis vinifera] gi|302143845|emb|CBI22706.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 106/110 (96%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELPPRPSDRKGKTSKRVHFV+NLIREVAGFAPYE+RI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+ LRKMRS G  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454218|ref|XP_002273507.1| PREDICTED: 60S ribosomal protein L36-3 [Vitis vinifera] gi|147820141|emb|CAN64895.1| hypothetical protein VITISV_013224 [Vitis vinifera]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 106/110 (96%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFV+N+IREVAGFAPYE+RI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+ LRKMRS G  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079093|ref|XP_002305746.1| predicted protein [Populus trichocarpa] gi|118484529|gb|ABK94139.1| unknown [Populus trichocarpa] gi|118487398|gb|ABK95527.1| unknown [Populus trichocarpa] gi|222848710|gb|EEE86257.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/110 (92%), Positives = 107/110 (97%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKRV FV++LIREVAGFAPYE+RI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN LRKMR+AGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116904|ref|XP_002317423.1| predicted protein [Populus trichocarpa] gi|222860488|gb|EEE98035.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 106/110 (96%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKRV FV++LIREVAGFAPYE+RI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSN LRKMR+AGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574026|ref|XP_003555154.1| PREDICTED: 60S ribosomal protein L36-3 [Glycine max]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 105/110 (95%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPK P+TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFV+NLIREVAGFAPYE+RI
Sbjct: 1   MAPKHPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN LRKMR+ G  +KKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137042|ref|XP_002322479.1| predicted protein [Populus trichocarpa] gi|118482219|gb|ABK93038.1| unknown [Populus trichocarpa] gi|118484900|gb|ABK94316.1| unknown [Populus trichocarpa] gi|222869475|gb|EEF06606.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/110 (91%), Positives = 106/110 (96%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQPNTGLFVGLNKGHVVTKK+L PRPSDRKGK+SKRV FV++LIREVAGFAPYE+RI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN LRKMRSAGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535863|ref|XP_003536462.1| PREDICTED: 60S ribosomal protein L36-3-like [Glycine max]

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 105/110 (95%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPK P+TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFV+NLIREVAGFAPYE+RI
Sbjct: 1   MAPKPPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN LRKMR+ G  +KKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509878|gb|AFK43005.1| unknown [Lotus japonicus]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/110 (90%), Positives = 105/110 (95%)

Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAPKQP+TGLFVGLNKGHVVTKKEL PRPSDRKGKTSKRVHFV++LIREVAGFAPYE+RI
Sbjct: 1   MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKKK 110
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSN LRKMRS GGA  KK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKK 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	0.936	0.953	0.828	3.6e-41
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	1.0	0.982	0.785	4.6e-41
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.927	0.902	0.819	3.3e-40
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.945	0.990	0.596	1.2e-26
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.945	0.990	0.596	1.2e-26
RGD|2322117	105	LOC100360439 "ribosomal protei	0.945	0.990	0.596	1.2e-26
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.945	0.990	0.596	1.9e-26
POMBASE|SPCC970.05	99	rpl3601 "60S ribosomal protein	0.863	0.959	0.6	3.2e-26
RGD|2319728	104	LOC100361644 "ribosomal protei	0.945	1.0	0.570	3.2e-26
RGD|2320881	104	LOC100361079 "ribosomal protei	0.945	1.0	0.570	3.2e-26

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/105 (82%), Positives = 97/105 (92%)

Query:     8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
             TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR  F++NLI+EVAG APYE+RITELLKVG
Sbjct:     4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query:    68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRS--AGGAEKKK 110
             KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS  AG +EKKK
Sbjct:    64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 88/112 (78%), Positives = 96/112 (85%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             M   Q  TGLFVGLNKGHVVT++EL PRP  RKGKTSKR  F++NLI+EVAG APYE+RI
Sbjct:     1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA--EKKK 110
             TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG   EKKK
Sbjct:    61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 86/105 (81%), Positives = 94/105 (89%)

Query:     8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
             TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR  F++ LIREVAG APYE+RITELLKVG
Sbjct:     8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query:    68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA---EKK 109
             KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GGA   EKK
Sbjct:    68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/109 (59%), Positives = 78/109 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
              ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A  A KK
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA--AAKK 104

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/109 (59%), Positives = 78/109 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
              ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A  A KK
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA--AAKK 104

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2322117 LOC100360439 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/109 (59%), Positives = 78/109 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + +GLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct:     1 MALRYP---MAMGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
              ELLKV KDKRALK  K+K+GTH RAK+KREE+SN L  MR A  A KK
Sbjct:    58 MELLKVSKDKRALKFIKKKVGTHIRAKRKREELSNVLAAMRKA--AAKK 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 65/109 (59%), Positives = 78/109 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPYERR 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
              ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A  A KK
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA--AAKK 104

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

POMBASE|SPCC970.05 rpl3601 "60S ribosomal protein L36" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/95 (60%), Positives = 77/95 (81%)

Query:     9 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGK 68
             GL VGLNKG V+TK++LP RPS RKG+ SKR  FV++++REVAGFAPYERR+ EL++  +
Sbjct:     4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query:    69 DKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
             DKRA K+AK++LGT KRAK K EE+++ ++  R A
Sbjct:    64 DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 61/107 (57%), Positives = 76/107 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPY+RR 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAE 107
              ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A   +
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKD 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|2320881 LOC100361079 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 61/107 (57%), Positives = 76/107 (71%)

Query:     1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
             MA + P   + VGLNKGH VTK    PR S R+G+ +K   FV+++IREV GFAPY+RR 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAE 107
              ELLKV KDKRALK  K+++GTH RAK+KREE+SN L  MR A   +
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKD 104

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.6395	0.7818	0.8190	yes	no
Q3T171	RL36_BOVIN	No assigned EC number	0.6082	0.8545	0.8952	yes	no
Q92365	RL36A_SCHPO	No assigned EC number	0.5825	0.8909	0.9898	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.6082	0.8545	0.8952	yes	no
P39032	RL36_RAT	No assigned EC number	0.5979	0.8545	0.8952	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.5979	0.8545	0.8952	yes	no
Q8UW19	RL36_LAPHA	No assigned EC number	0.5979	0.8545	0.8952	N/A	no
Q55AQ9	RL36_DICDI	No assigned EC number	0.4891	0.8181	0.8571	yes	no
O80929	RL361_ARATH	No assigned EC number	0.8383	0.9	0.8761	no	no
P52866	RL36_DAUCA	No assigned EC number	0.8089	0.8090	0.8396	N/A	no
Q24F59	RL36_TETTS	No assigned EC number	0.5050	0.8454	0.8942	N/A	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5876	0.8545	0.8952	yes	no
Q66KU4	RL36_XENLA	No assigned EC number	0.5979	0.8545	0.8952	N/A	no
P49630	RL36_DROME	No assigned EC number	0.5	0.8545	0.8173	yes	no
Q90YT2	RL36_ICTPU	No assigned EC number	0.5876	0.8545	0.8952	N/A	no
Q9LRB8	RL36_ENTCP	No assigned EC number	0.6836	0.8909	0.9702	N/A	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.6082	0.8545	0.8952	yes	no
O94658	RL36B_SCHPO	No assigned EC number	0.5728	0.8909	0.9898	yes	no
P49181	RL36_CAEEL	No assigned EC number	0.5368	0.8636	0.9134	yes	no
Q4PM12	RL36_IXOSC	No assigned EC number	0.62	0.9090	0.9090	N/A	no
P05745	RL36A_YEAST	No assigned EC number	0.5	0.8181	0.9	yes	no
Q9LZ57	RL363_ARATH	No assigned EC number	0.8285	0.9363	0.9537	yes	no
O14455	RL36B_YEAST	No assigned EC number	0.5	0.8181	0.9	yes	no
Q9HFR7	RL36_TRIHM	No assigned EC number	0.5288	0.9363	0.9809	N/A	no
Q9M352	RL362_ARATH	No assigned EC number	0.7857	1.0	0.9821	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	1e-41
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	9e-33
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	3e-19
pfam12794	339	pfam12794, MscS_TM, Mechanosensitive ion channel i	0.003

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score =  131 bits (333), Expect = 1e-41
 Identities = 67/95 (70%), Positives = 79/95 (83%)

Query: 9   GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGK 68
           G+ VGLNKGH VTK+   PRPS RKGK SKR  FV+++IREVAGFAPYE+R+ ELLKVGK
Sbjct: 1   GIAVGLNKGHKVTKRPRKPRPSRRKGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGK 60

Query: 69  DKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
           DKRALK AK++LGTH+RAK+KREE+SN L   R A
Sbjct: 61  DKRALKFAKKRLGTHRRAKRKREELSNVLAAQRKA 95

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score =  109 bits (275), Expect = 9e-33
 Identities = 65/96 (67%), Positives = 76/96 (79%)

Query: 6   PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLK 65
           P TG+ VGLNKGH+VTK+   P PS RKG  SKR   VK++IREV GF+PYERR+ ELLK
Sbjct: 1   PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLK 60

Query: 66  VGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 101
           VGKDKRALK AK++LGTHKRAK KR+E+  ALR  R
Sbjct: 61  VGKDKRALKYAKKRLGTHKRAKAKRDEIQEALRAQR 96

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 75.4 bits (185), Expect = 3e-19
 Identities = 49/90 (54%), Positives = 71/90 (78%)

Query: 8  TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
           GL VGLNKG  VTK++ P RPS +KG+ SKR  FV++++RE+AG +PYERR+ EL++  
Sbjct: 5  PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNS 64

Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
          +DKRA K+AK++LG+ KRAK K EE+++ +
Sbjct: 65 QDKRARKLAKKRLGSLKRAKAKVEELTSVI 94

Length = 97

>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane domain 1

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 70  KRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGG 105
           KR L +A+R+L  ++RAK KR E+     +      
Sbjct: 248 KRWLLIARRRL-AYERAKAKRAEILAQRAEEEEESS 282

The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this domain is one of the inner membrane domains. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	100.0

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.3e-55  Score=308.17  Aligned_cols=98  Identities=66%  Similarity=1.006  Sum_probs=84.5

Q ss_pred             CCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033850            6 PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR   85 (110)
Q Consensus         6 ~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R   85 (110)
                      +++|||||||+||+||++.++++||+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|
T Consensus         1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R   80 (98)
T PF01158_consen    1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR   80 (98)
T ss_dssp             --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred             CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 033850           86 AKKKREEMSNALRKMRSA  103 (110)
Q Consensus        86 AKrK~eel~~vl~~~Rk~  103 (110)
                      ||+|+|||+|||++||++
T Consensus        81 AKrKrEel~~vl~~~rk~   98 (98)
T PF01158_consen   81 AKRKREELSNVLAAMRKA   98 (98)
T ss_dssp             HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=3.5e-54  Score=304.91  Aligned_cols=98  Identities=66%  Similarity=1.016  Sum_probs=95.8

Q ss_pred             CCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033850            6 PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR   85 (110)
Q Consensus         6 ~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R   85 (110)
                      +++||||||||||+||++.++++||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|
T Consensus         1 ~~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~R   80 (98)
T PTZ00196          1 PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKR   80 (98)
T ss_pred             CCCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 033850           86 AKKKREEMSNALRKMRSA  103 (110)
Q Consensus        86 AKrK~eel~~vl~~~Rk~  103 (110)
                      ||+|+|||++||++||+.
T Consensus        81 aK~Kreel~~vl~~~rkk   98 (98)
T PTZ00196         81 AKAKRDEIQEALRAQRKK   98 (98)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999973

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-50  Score=288.19  Aligned_cols=101  Identities=68%  Similarity=0.960  Sum_probs=98.0

Q ss_pred             CCCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhH
Q 033850            5 QPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHK   84 (110)
Q Consensus         5 ~~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~   84 (110)
                      +..+|++||||+||++|++++.||+|+++|.+|+|++||+|||+|||||||||+++||||++|+||+|+||+|+|||||+
T Consensus         2 ~~~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~   81 (102)
T KOG3452|consen    2 AVCYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHK   81 (102)
T ss_pred             CcccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q 033850           85 RAKKKREEMSNALRKMRSAGG  105 (110)
Q Consensus        85 RAKrK~eel~~vl~~~Rk~~a  105 (110)
                      |||+|+|||+|||++||++++
T Consensus        82 RAk~KrEELsnvl~~~rk~~~  102 (102)
T KOG3452|consen   82 RAKRKREELSNVLAAMRKAHA  102 (102)
T ss_pred             HHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999764

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-35  Score=207.48  Aligned_cols=93  Identities=53%  Similarity=0.896  Sum_probs=90.6

Q ss_pred             CccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033850            7 NTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRA   86 (110)
Q Consensus         7 ~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~RA   86 (110)
                      ..|+++|||+|-+||++...+|||.++|.+++|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||
T Consensus         4 ~~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRA   83 (97)
T COG5051           4 APGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRA   83 (97)
T ss_pred             ccchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 033850           87 KKKREEMSNALRK   99 (110)
Q Consensus        87 KrK~eel~~vl~~   99 (110)
                      +.|.|||.++|++
T Consensus        84 kaKvEel~~~i~~   96 (97)
T COG5051          84 KAKVEELTSVIQS   96 (97)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		6e-50
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		1e-19
3zf7_m	109	High-resolution Cryo-electron Microscopy Structure		1e-18
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-17

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score =  191 bits (486), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 101/106 (95%)
Query: 1   MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
           MAP QP +GLFVG+NKGHVVTK+ELPPRPSDRKGK +KRVHFV+NLIREVAGFAPYE+RI
Sbjct: 1   MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA 106
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+ LRKMRSAGG 
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGGG 106

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%)
Query: 8  TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
          TG+ +GLNKG  VT     P+ S +KG  S R  FV++L+RE+AG +PYERR+ +L++  
Sbjct: 5  TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
           +KRA KVAK++LG+  RAK K EEM+N +
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNII 94

>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 109

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 64/94 (68%)
Query: 6   PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLK 65
           P TG+  G NKG+  T++   P  +DR     K++  VK +I ++ GF+P ERR+ ELL+
Sbjct: 11  PRTGIIAGFNKGYKTTRRARRPSSNDRYALPHKKLRAVKAIISDLVGFSPMERRVQELLR 70
Query: 66  VGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 99
           VGKDKRALK  K++LG+ K AKK+R ++  ALR+
Sbjct: 71  VGKDKRALKFCKKRLGSIKAAKKRRAKVEEALRQ 104

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
Query: 9   GLFVGLNKGHVVTK--KELPPRPS-DRKGKTSKRVHFVKNLIREVAGFAPYERRITELLK 65
           G  VG+NKG + T+  K+L    +  RKGK  KRV  V+ +IREV GFAPYE+RI EL+K
Sbjct: 4   GQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63
Query: 66  VG--KD-KRALKVAKRKLGTHKRAKKKREEMSNALRKMR 101
            G  KD K+A K+A+++LGTH+RAK K+  +  A+R  R
Sbjct: 64  AGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQR 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	9e-33
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	2e-31
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	7e-26

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 92.0 bits (228), Expect = 7e-26
 Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 6/100 (6%)

Query: 8   TGLFVGLNKGHVVTKKEL---PPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELL 64
            G  VG+NKG + T+ E          RKGK  KRV  V+ +IREV GFAPYE+RI EL+
Sbjct: 3   KGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELI 62

Query: 65  KVGK---DKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 101
           K G     K+A K+A+++LGTH+RAK K+  +  A+R  R
Sbjct: 63  KAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQR 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=2.6e-54  Score=307.28  Aligned_cols=96  Identities=50%  Similarity=0.795  Sum_probs=94.6

Q ss_pred             CccceeeecCCceec---ccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 033850            7 NTGLFVGLNKGHVVT---KKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGK---DKRALKVAKRKL   80 (110)
Q Consensus         7 ~~giavGlnKGhkvt---k~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~sk---dKrAlKf~KKRl   80 (110)
                      ++|||||||+||+||   ++.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+   |||||||+|+||
T Consensus         2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl   81 (104)
T 4a18_Q            2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL   81 (104)
T ss_dssp             CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence            589999999999999   99999999999999999999999999999999999999999999999   999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHh
Q 033850           81 GTHKRAKKKREEMSNALRKMRS  102 (110)
Q Consensus        81 Gth~RAKrK~eel~~vl~~~Rk  102 (110)
                      |||+|||+|+|||+|||++||+
T Consensus        82 Gth~RAKrKreel~~vl~~~Rk  103 (104)
T 4a18_Q           82 GTHRRAKVKKALLEEAVRAQRK  103 (104)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00