BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033852
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/99 (98%), Positives = 99/99 (100%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 199 bits (505), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 95/99 (95%), Positives = 99/99 (100%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KK
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK 101
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/99 (93%), Positives = 96/99 (96%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KK
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKK 99
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/99 (87%), Positives = 92/99 (92%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG VNLGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KK
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKK 102
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 81/95 (85%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
Y+RLRPLSY DVF++ FSL+S ASYENV K F
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWF 98
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 155 bits (391), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 115
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 155 bits (391), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 155 bits (391), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 155 bits (391), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 155 bits (391), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 155 bits (391), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 154 bits (390), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 154 bits (390), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 154 bits (390), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 154 bits (390), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 81/93 (87%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 154 bits (389), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/100 (68%), Positives = 82/100 (82%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
+A IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V K +
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWY 250
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 154 bits (389), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/100 (68%), Positives = 82/100 (82%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
+A IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V K +
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWY 250
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 154 bits (389), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/100 (68%), Positives = 82/100 (82%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
+A IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V K +
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWY 250
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 82/98 (83%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDT
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 103
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N P +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 82/99 (82%)
Query: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
S+ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTA
Sbjct: 6 GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
GQEDY+RLRPLSY DVF++ FSL+S ASYENV K F
Sbjct: 66 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWF 104
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 82/97 (84%)
Query: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
+ + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
GQEDY+RLRPLSY DV ++ FSL+S AS+ENV K
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 152 bits (383), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 152 bits (383), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DV ++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 96
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DV ++ FSL+S AS+ENV K
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 96
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DV ++ FSL+S AS+ENV K
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 100
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 152 bits (383), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 99
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/95 (73%), Positives = 80/95 (84%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101
Y+RLRPLSY DVF++ FSL+S ASYENV K F
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWF 105
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 80/93 (86%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N F +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FSL+S AS+ENV K
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 106
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 84/112 (75%), Gaps = 19/112 (16%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67 YNRLRPLSY--------------RG-----ADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY RG ADVF++ FSL+S AS+ENV K
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAK 117
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 82/99 (82%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
+SA + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 103
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 80/97 (82%)
Query: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
S+ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTA
Sbjct: 4 GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
GQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 100
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 80/98 (81%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 99
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 80/98 (81%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 99
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 80/98 (81%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 98
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 106
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 97
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 98
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 78/93 (83%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 79/98 (80%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
S + IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 103
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N P++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
Y+RLRPLSY DVF++ FS++S +S+ENV +K
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 100
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 8/113 (7%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
+KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G LGL+DTAGQE
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKK--------VFNCSWLLIQT 110
DY+RLRPLSY DVF++ FS+++ AS++NV ++ N +LLI T
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 130
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 76/93 (81%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
+KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+++LRPL Y D+F+L FS++S +S++NV++K
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEK 113
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 21 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 118
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
SA+ K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDT
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 102
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 100
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 21 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 118
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 100
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 4 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 63 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 101
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 2 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 99
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 100
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEK 118
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 118 bits (295), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 96
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 96
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGD A GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 2 MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 99
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+A R K V VGD A GKTC+LI ++ + FP YVPTVF+N+ A++ VDG V L LWD
Sbjct: 1 MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
TAGQEDY+R RPLSY DV ++ FS+ S S EN+ +K
Sbjct: 60 TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEK 98
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 66/92 (71%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + + FP YVPTVF+N+ A++ VDG V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+RLRPLSY DV ++ FS+ S S EN+ +K
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 101
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTC+LI + FP YVPTVF+N+ A+V VDG V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+RLRPLSY ++V ++ FS+ S ENV +K
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEK 103
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 70/98 (71%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
+ + +K V VGDGAVGKTC+L++++ PT YVPTVF+NFS + L LWDT
Sbjct: 18 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQE+Y+RLRPLSY +DV +L F++ ++ S++N++ K
Sbjct: 78 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTK 115
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 70/98 (71%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
+ + +K V VGDGAVGKTC+L++++ PT YVPTVF+NFS + L LWDT
Sbjct: 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
AGQE+Y+RLRPLSY +DV +L F++ ++ S++N++ K
Sbjct: 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTK 116
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R +K V VGDG GKT +L+ + FP Y PTVF+ + N+ V G V+L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+DY+RLRPL Y A V +L F + S S++N+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI 124
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 1 MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
M ++ +KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
WDT+G Y+ +RPLSY +D ++ F + + ++V KK
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 116
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 1 MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
M ++ +KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
WDT+G Y+ +RPLSY +D ++ F + + ++V KK
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 121
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 3 ASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
+++ +KC V VGD GKT +L + + FP +YVPTVF+N++A+ +D + L LWD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK 99
T+G Y+ +RPLSY +D ++ F + + ++V KK
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 100
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+ +RPL Y +D +L F + + ++ KK
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKK 104
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+ +RPL Y +D +L F + + ++ KK
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKK 103
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VGD GKT ML + +P YVPTVF+N++A + + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKK 99
+ +RPL Y +D +L F + + ++ KK
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKK 120
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
S +K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V L +WDTA
Sbjct: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVA 97
GQE + LR YRGAD +L FS+ + S+EN+
Sbjct: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG 99
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
IK V VG+GAVGK+ M+ Y F DY T+ D + V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVA 97
+++ + YRGA +L FS + S+E ++
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS 97
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + SY NV +
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ 102
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + SY NV +
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ 102
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +WDTA
Sbjct: 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKVF 101
GQE + LR YRG+D +L FS+ S++N++ KK F
Sbjct: 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +N F T T+ F + ++ VDG V + +WDTA
Sbjct: 7 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKVF 101
GQE + LR YRG+D +L FS+ S++N++ KK F
Sbjct: 67 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 107
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+L FS+ S+
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESF 90
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+L FS+ S+
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESF 94
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+ FS+ S+
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESF 105
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+ FS+ S+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESF 93
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ + YRGA I+ + + + S+ NV +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 92
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+ FS+ S+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESF 91
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+ FS+ S+
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESF 101
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 99
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 99
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 101
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 118
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
S K + +GDG VGK+ ++ Y +N F + T+ F + ++ VDG V + +WDTA
Sbjct: 9 SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVA--KKVF 101
GQE + LR YRG+D +L FS+ S++N++ KK F
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 109
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 126
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S+ NV +
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
+GD VGK+C+L+ + +T+ Y+ T+ +F + +DG T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71 RPLSYRGADVFILAFSLISKASYENVAK 98
YRGA I+ + + + S+ NV +
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNVKQ 91
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ +R R + F+ F++ + S+E++ +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ 95
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + + YRG+ I+ + + + S+ V
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 99
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + + YRG+ I+ + + + S+ V
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 99
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ +R R + F+ F++ + S+E++ +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ 95
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ VGK+C+L+ ++ +T+ DY+ T+ +F V +DG TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + + YRG+ I+ + + + S+ V
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 112
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ +R R + F+ F++ + S+E++ +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ 95
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENV 96
+ +R R + F+ F++ + S+E++
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ +R R + F+ F++ + S+E++ +
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ 95
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y R+ YRGA +L + + +YENV +
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVER 98
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K V VG VGK+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENV 96
+ +R R + F+ F++ + S+E++
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI 94
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
++ L P+ YR ++ IL + + + S++ V
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV 97
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
++ L P+ YR ++ IL + + + S++ V
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV 111
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+G VGKT +++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
++ L P+ YR ++ IL + + + S++ V
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV 97
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +GD VGK+C+L+ + +T+ Y+ T+ +F + ++ TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA I+ + + + S++NV +
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ 102
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGKTC+L ++ + F + ++ T+ +F + +DG + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ + YRGA +L + + ++ S++N+
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI 97
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGKTC+L ++ + F + ++ T+ +F + +DG + L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ + YRGA +L + + ++ S++N+
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNI 99
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ + + + + F DY PT D++ VV+DG V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68 NRLRPLSYRGADVFILAFSLISKASY 93
+R +R + F+ FS+ S+
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESF 93
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
K + VGD VGKTC+L+ + F ++ TV +F V+ VDG V L +WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENV 96
+ + YR A +L + + +KAS++N+
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNI 102
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
S +K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDT
Sbjct: 4 GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
AGQE + + YRGA IL + + + ++ N+ +
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 100
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ + YRGA IL + + + ++ N+ +
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQ 96
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 113
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 63
K + +GD VGK+ +L+ + NTF Y+ T+ +F V ++G V L +WDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
QE + + YRG I+ + + S S+ NV +
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
+K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L LWDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + + YRGA IL + + + ++ N+ +
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAG 63
+K + +GD VGKT ++ Y ++ + Y T+ +F + V VDG V + +WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
QE + L YRGAD +L + + + +S+EN+
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENI 100
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ + YRGA IL + + + ++ N+ +
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQ 96
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
+K + +GD VGK+C+L+ + + F ++ T+ +F V ++G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ + YRGA IL + + + ++ N+ +
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 96
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
+K + +G+ VGK+ +L+ +T +TF + T+ +F + VDG+ L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASY 93
+ L P YRGA IL + + + ++
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTF 103
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +GD GK+ +++ + + F T+ F S + V+ +TV +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
Y+ L P+ YRGA I+ F + ++AS+E K
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
S K + +GD VGK+C+L+ +T F + T+ F A +V +DG + L +WDT
Sbjct: 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106
AGQE + + YRGA +L + + + ++ ++ SWL
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHL------TSWL 116
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV +GS+ V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAGQE + L +R A F+L F L S+ S+ NV
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV 126
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G GK+C+L + N F D T+ F + VV V G TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVA 97
E + + YRGA +L + + S+ +Y ++A
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA 117
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
S SR K + +GD VGKTC+ + + FP T+ +F V +DG + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61 TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLI 108
TAGQE + + + YR + + + + AS+ ++ + C L+
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL 124
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAG E + L +R A F+L F L S+ S+ NV
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV 112
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + L YRGAD +L F + + +++ +
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + L YRGAD +L F + + +++ +
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + + F TDY PT+ D+++ V+D L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+L FS+ + S+E + K
Sbjct: 78 EGFLLVFSVTDRGSFEEIYK 97
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 101
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 98
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + L YRGAD +L F + + +++ +
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAG E + L +R A F+L F L S+ S+ NV
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV 112
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F + T+ F+ ++ VDG T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E Y + YRGA +L + + +YENV +
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 104
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
IK V +G+ AVGK+ +++ + SN F + PT+ F + V ++ TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASY 93
+ L P YR A ++ + + S+
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSF 91
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAG E + L +R A F+L F L S+ S+ NV
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV 112
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +GD VGK+C+L+ +T F + T+ F A ++ +DG + L +WDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ + YRGA +L + + + ++ ++
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHL 101
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 69 YHSLAPMYYRGAQAAIVVYDITNEESF 95
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
K + +G+ +VGKT L Y +TF +V TV +F V V L +WDTAGQE
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV---AKKVFNCSW 105
Y + YRGA FIL + + ++ S+ V A ++ SW
Sbjct: 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGKT ++ + +TF +Y T+ D S + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ L P R + I+ + + ++ S+EN K
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTK 94
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 2 SASRF--IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 58
SAS+ K V +G+ AVGK+ +++ + F T+ F + +V +D +TV +
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
WDTAGQE Y+ L P+ YRGA I+ + + ++ ++
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETF 96
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
S K + +GD VGK+C+L +T F D T+ F ++ V G + L +WDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106
GQE + + YRGA ++ + + +++Y +++ SWL
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS------SWL 110
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +G+ VGKTC++ +T FP T+ +F V ++G V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASY 93
E + + YR A+ IL + + + S+
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESF 114
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV DG++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAG E + L +R A F+L F L S+ S+ NV
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV 112
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
SR K + +GD VGKTC+ + + FP T+ +F V +DG + + LWDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63 GQEDYNR-LRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLI 108
GQE + + + YR + + + AS+ ++ + C L+
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL 133
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P YRGA I+ + + ++ S+
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESF 95
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67 YNRLRPLSYRGADVFILAFSL 87
Y+ L P+ YRGA I+ + +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDI 87
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 83 EGFLCVFAINNTKSFEDIHQ 102
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By
The Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T N F D T+ F+ + ++G + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYEN 95
E Y + YRGA ++ + + +SYEN
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYEN 103
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSL 87
Y+ L P+ YRGA I+ + +
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDI 85
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant
In Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus
Des C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate
Conformation Of H-Ras P21 At 1.35 Angstroms Resolution:
Implications For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In
Calcium A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution:
One Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs
Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs
Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs
Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1RVD|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQ 100
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQ 100
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp (2)
Length = 166
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ VGK+ +++ + F T+ F + V +D +TV +WDTAGQE
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESF 94
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V VGD +VGKTC++ + + F T+ +F+ + + G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + + YR A+ ILA+ + ++S+ +V
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSV 120
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
+K + +GD VGKT ++ Y + F Y T+ +F + V+VD V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + L YRGAD +L F + + +++ +
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
Length = 166
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
K + +G+ +VGKT L Y ++F +V TV +F + + + L +WDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
Y + YRGA FIL + + ++ S+ V
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAV 96
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 54
IK + +GD VGKT +L YT F + ++ TV +F VV G +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
+L LWDTAG E + L +R A F+L F L ++ S+ NV
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV 112
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFILAFSLISKASYENV 96
+ F+ F++ + S+E++
Sbjct: 77 EGFLCVFAINNTKSFEDI 94
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFILAFSLISKASYENV 96
+ F+ F++ + S+E++
Sbjct: 77 EGFLCVFAINNTKSFEDI 94
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
Length = 167
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + +R L + F L +S+ +++++ ++
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL 93
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
Y+ L P+ YRGA I+ + + ++ S+
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESF 93
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
S K + +GD VGK+C+L +T F D T+ F ++ V G + L +WDTA
Sbjct: 28 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106
GQ + + YRGA ++ + + +++Y +++ SWL
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS------SWL 125
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y P++ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 82 EGFLCVFAINNTKSFEDIHQ 101
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ +++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
K + +G+ +VGKT L Y ++F +V TV +F V + L +WDTAGQE
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV---AKKVFNCSW 105
Y + YRGA F+L + + ++ S+ V A ++ SW
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW 125
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F +Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + +R L + F L +S+ +++++ ++
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL 93
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F ++ PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72
G G VGK+ +++ + TF Y+PTV D + + D S L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73 LSYRGADVFILAFSLISKASYENV 96
LS FIL +S+ S+ S E +
Sbjct: 70 LSISKGHAFILVYSITSRQSLEEL 93
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + +R L + F L +S+ +++++ ++
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL 93
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
K V +G+ VGKT +L +T N F D T+ FS V+ G+ V +WDTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
Y + YRGA +L F L +Y V +
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYAVVER 103
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79 DVFILAFSLISKASYENV 96
+ F+ F++ + S+E++
Sbjct: 94 EGFLCVFAINNTKSFEDI 111
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASY 93
E + + YRGA +L + + S+ +Y
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETY 98
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWD 60
S+ + K V GD AVGK+ L+ N F + T+ +F ++VDG L LWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
TAGQE + + +R AD +L + + + S+ N+
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI 119
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
K V +G+ VGKT +L +T N F D T+ FS V+ G+ V +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
Y + YRGA +L F L +Y V +
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVER 118
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASY 93
E + + YRGA +L + + S+ +Y
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY 99
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
SA R +K +GD VGK+ ++ + + F + PT+ +F V G+ ++ L WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
TAGQE ++ L P+ YRG+ ++ + + + S+ + K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK 116
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
++ + +G VGKT ++ +T +TF TV +F V + G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+N + YR A IL + + K +++++ K
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPK 119
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 65
K V +GD VGK+ +L +T + F + T+ F+ + + + +WDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
Y + YRGA +L + + K S+EN+ K
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEK 101
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79 DVFILAFSLISKASYENV 96
+ F+ F++ + S+ ++
Sbjct: 94 EGFLCVFAINNSKSFADI 111
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound
Form
Length = 166
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YVPT+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVA 97
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 102
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 81 EGFLCVFAINNTKSFEDIHQ 100
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ +++ + F T+ F + V +D +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFILAFSL 87
Y+ L P+ YRGA I+ + +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDI 87
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F +Y PT+ D++ VV+DG T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp
Length = 166
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I N F + PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVAK 98
+ F+ F++ + S+E++ +
Sbjct: 76 EGFLCVFAINNTKSFEDIHQ 95
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
K + +G+ +VGKT L Y ++F +V TV +F + + + L +WDTAG E
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
Y + YRGA FIL + + ++ S+ V
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAV 99
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YVPT+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
QE + L P R + V ++ + + + S+ +K
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVAK 98
D F++ +S+ KAS+E+V +
Sbjct: 91 DGFLIVYSVTDKASFEHVDR 110
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F DY PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79 DVFILAFSLISKASYENVAK 98
D F++ +S+ KAS+E+V +
Sbjct: 86 DGFLIVYSVTDKASFEHVDR 105
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ L P R + V ++ + + + S++ +K
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSK 95
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVAK 98
D F++ +S+ KAS+E+V +
Sbjct: 91 DGFLIVYSVTDKASFEHVDR 110
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
R K V +G VGK+ + + + F Y PT+ D++ V VD L + DTAG
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENV 96
E + +R L + F L +S+ +++++ ++
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL 95
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAK 98
+ L P R + V ++ + + + S++ K
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK 94
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + + F +DY PT+ D+++ VDG L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79 DVFILAFSLISKASYENVAK 98
F+L F++ + S+ V K
Sbjct: 82 HGFLLVFAINDRQSFNEVGK 101
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M+ S +K G VGK+ +++ + + F +Y PT+ + +D V++ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
TAGQED + R R + F+L + + + S+E V
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEV 117
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + I + F +Y PT+ D++ + +D L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVAK 98
D F++ +S+ KAS+E+V +
Sbjct: 91 DGFLIVYSVTDKASFEHVDR 110
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K + +G+ GK+C+L + F D T+ F + ++ V G V L +WDTAG E
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASY 93
+ + YRGA +L + + S+ +Y
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETY 96
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
Y LR Y A I+ F + S+ +Y+NV
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
K V +GD VGK+ +L +T++ F + T+ F+ + V+ + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYEN 95
E Y + YRGA ++ + + +SYEN
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYEN 100
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
S R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
TAGQE + L P R + ++ + + + S++ K
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK 99
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M S+ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYE 94
TAGQ++Y+ + P +Y D+ +IL +S+ S S+E
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE 94
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ + + + + TF Y PT+ D + + VD S L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79 DVFILAFSLISKASYENV 96
FIL +SL+++ S++++
Sbjct: 76 QGFILVYSLVNQQSFQDI 93
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M S+ K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYE 94
TAGQ++Y+ + P +Y D+ +IL +S+ S S+E
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE 94
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 94
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTYKNV 101
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 106
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + L P R + V ++ + + + S++ K
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK 99
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ TV L LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + L P R + V ++ + + + S++ K
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK 109
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 63
R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASY 93
QE + L P+ YRG+ I+ + + + ++
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETF 93
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
K +G +VGK+ + I + F Y PT+ + F+ + V+G +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 NRLRPLSYRGADV--FILAFSLISKASYENVAKKVFNCSWL 106
+ + P +Y D+ +IL +S+ S S+E + KV + L
Sbjct: 63 S-IFPQTY-SIDINGYILVYSVTSIKSFEVI--KVIHGKLL 99
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
SA R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
TAG E + L P+ YRG+ I+ + + + ++
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
M R+ K V +G VGKT + + F Y PTV + +S V + +L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYNRLRPLSY-RGADVFILAFSLISKASYE 94
TAGQ++Y+ L P S+ G ++L +S+ S S++
Sbjct: 79 TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ 112
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ +++ + TF Y+PT+ D + + D S L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79 DVFILAFSLISKASYENVA 97
FIL FS+ SK S E +
Sbjct: 81 HAFILVFSVTSKQSLEELG 99
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ L Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNV 95
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNV 96
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 103
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVA 97
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 98
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
R K V +G+ +VGKT ++ + ++F Y T+ D S + ++ T+ L LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
E + L P R + ++ + + + S++ K
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK 106
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F YV T+ V + + +WDTAG E
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLW 59
S R +K V +GDGA GKT + + TF Y T+ D F + + G+ V L +W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96
D GQ ++ GA +L + + + S+EN+
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL 98
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + F Y+ T+ + + + + +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNV 103
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
K V VGDG GKT + + + YV T+ V + + +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96
+ LR Y A I+ F + S+ +Y+NV
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 106
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 65
K +GDG VGKT + F +Y TV N + D G+ + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAK 98
L+ + Y GA IL F + S+ + +N+A+
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLAR 105
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
S SR K +G +VGK+ + I + F PT+ + F+ + V+G +L L D
Sbjct: 1 QSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVD 58
Query: 61 TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYE 94
TAGQ++Y+ + P +Y D+ +IL +S+ S S+E
Sbjct: 59 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE 92
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87
+ +WDTAGQE Y + PL YRGA I+ F +
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
Length = 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
+ +G GK+ + + + + F ++Y P + D +S+ VD V+L + DTA
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 1 MSASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTV-FDNFSANVVVDGSTVN-- 55
++A+ K VG+ VGK+ ++ +TS + F DY T + A V + +TV+
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 95
L L DTAG + Y + G IL F + S S+E+
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES 114
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 18 GKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG 77
GKT + S F D +PTV F+ V G+ V + +WD GQ + + RG
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMWERYCRG 90
Query: 78 ADVFILAFSLISKASYENVAKKVFN 102
+ + + E ++ N
Sbjct: 91 VNAIVYMIDAADREKIEASRNELHN 115
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
++ VG GKT + S F D +PTV F+ + G+ V + LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKVFN 102
+ + RG + + E ++ N
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN 124
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 18 GKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG 77
GKT + S F D +PTV F+ + G+ V + LWD GQ + + RG
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRG 90
Query: 78 ADVFILAFSLISKASYENVAKKVFN 102
+ + E ++ N
Sbjct: 91 VSAIVYMVDAADQEKIEASKNELHN 115
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 43 FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
++ VD + +++ LWD AGQE +R L G D F
Sbjct: 114 YTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 43 FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
++ VD + +++ LWD AGQE +R L G D F
Sbjct: 134 YTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|3F4T|A Chain A, Crystal Structure Of Wolbachia Pipientis Alpha-Dsba1
C97aC146A
Length = 226
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 69 RLRPLSYRGADVFILAFSLISKASYENVAKKVFNC--SW 105
R PL YRG +L+ + + Y N K VFN SW
Sbjct: 80 RHFPLDYRGLKAAMLSHAYEKQEDYFNFNKAVFNSIDSW 118
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-------- 58
IK +GDG GKT +L TF P NVV + GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 59 -----WDTAGQE 65
WD GQE
Sbjct: 98 CLFHFWDFGGQE 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,154,579
Number of Sequences: 62578
Number of extensions: 118154
Number of successful extensions: 597
Number of sequences better than 100.0: 286
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 287
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)