Query 033852
Match_columns 110
No_of_seqs 129 out of 1243
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.1E-34 2.4E-39 180.6 9.7 105 4-109 7-112 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 7.2E-33 1.6E-37 172.0 10.5 105 4-109 3-108 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.8E-32 6.1E-37 169.8 9.6 103 5-108 21-124 (221)
4 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-30 5.2E-35 163.4 11.9 107 3-109 2-108 (182)
5 KOG0098 GTPase Rab2, small G p 100.0 1.1E-30 2.4E-35 161.7 9.2 109 1-110 1-111 (216)
6 cd04131 Rnd Rnd subfamily. Th 100.0 6.3E-30 1.4E-34 161.0 12.2 104 6-109 1-104 (178)
7 cd04133 Rop_like Rop subfamily 100.0 8.9E-30 1.9E-34 160.1 12.5 101 7-107 2-102 (176)
8 cd01875 RhoG RhoG subfamily. 100.0 9.5E-30 2.1E-34 161.6 12.0 102 5-106 2-103 (191)
9 KOG0080 GTPase Rab18, small G 100.0 1E-29 2.2E-34 154.4 10.4 102 5-107 10-112 (209)
10 KOG0078 GTP-binding protein SE 100.0 4.5E-30 9.7E-35 161.7 8.8 106 3-109 9-115 (207)
11 KOG0079 GTP-binding protein H- 100.0 1.1E-30 2.4E-35 156.8 5.5 104 5-109 7-111 (198)
12 KOG0087 GTPase Rab11/YPT3, sma 100.0 8.3E-30 1.8E-34 160.4 9.4 105 4-109 12-117 (222)
13 cd01874 Cdc42 Cdc42 subfamily. 100.0 1E-28 2.2E-33 155.0 12.4 102 6-107 1-102 (175)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5E-29 1.1E-33 162.4 11.3 104 5-108 12-115 (232)
15 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-29 2.7E-34 156.7 7.6 100 4-104 7-107 (210)
16 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.2E-29 1.3E-33 161.1 10.8 103 6-108 1-103 (222)
17 cd01871 Rac1_like Rac1-like su 100.0 4.4E-28 9.5E-33 152.0 12.1 101 7-107 2-102 (174)
18 cd04121 Rab40 Rab40 subfamily. 100.0 3.2E-28 7E-33 154.5 10.8 105 4-109 4-109 (189)
19 cd04120 Rab12 Rab12 subfamily. 100.0 2.8E-28 6.2E-33 156.2 10.4 99 7-106 1-100 (202)
20 KOG0095 GTPase Rab30, small G 100.0 9.8E-29 2.1E-33 148.8 6.4 104 4-108 5-109 (213)
21 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-27 3.3E-32 150.6 11.0 100 7-107 1-101 (182)
22 KOG0086 GTPase Rab4, small G p 100.0 2.8E-28 6.1E-33 147.3 6.9 104 5-109 8-112 (214)
23 KOG0393 Ras-related small GTPa 100.0 2.5E-28 5.4E-33 154.0 6.7 107 4-110 2-109 (198)
24 cd04134 Rho3 Rho3 subfamily. 99.9 4.8E-27 1E-31 148.9 12.3 100 8-107 2-101 (189)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.2E-27 4.8E-32 148.6 10.2 99 6-105 2-100 (172)
26 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.5E-26 3.2E-31 144.6 12.5 100 7-106 1-100 (173)
27 PTZ00369 Ras-like protein; Pro 99.9 7.2E-27 1.6E-31 148.1 10.8 101 4-105 3-103 (189)
28 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.8E-27 8.3E-32 150.9 9.5 99 7-106 1-105 (202)
29 cd04136 Rap_like Rap-like subf 99.9 7.5E-27 1.6E-31 144.1 9.9 99 6-105 1-99 (163)
30 PLN03071 GTP-binding nuclear p 99.9 1.5E-26 3.2E-31 149.8 11.6 103 4-107 11-114 (219)
31 smart00174 RHO Rho (Ras homolo 99.9 2.1E-26 4.5E-31 143.7 11.8 100 9-108 1-100 (174)
32 cd04122 Rab14 Rab14 subfamily. 99.9 1.4E-26 3.1E-31 143.7 10.4 100 6-106 2-102 (166)
33 cd04132 Rho4_like Rho4-like su 99.9 1.9E-26 4E-31 145.6 10.7 99 7-105 1-100 (187)
34 cd04176 Rap2 Rap2 subgroup. T 99.9 1.6E-26 3.5E-31 142.9 10.1 99 6-105 1-99 (163)
35 cd04117 Rab15 Rab15 subfamily. 99.9 2.2E-26 4.7E-31 142.5 10.6 100 7-107 1-101 (161)
36 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2E-26 4.3E-31 147.3 10.5 98 7-105 1-100 (201)
37 cd04175 Rap1 Rap1 subgroup. T 99.9 3E-26 6.6E-31 141.8 9.8 99 6-105 1-99 (164)
38 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.9E-26 8.4E-31 142.7 10.2 97 8-105 2-99 (170)
39 PF00071 Ras: Ras family; Int 99.9 1.4E-26 3.1E-31 142.9 8.1 101 8-109 1-102 (162)
40 PLN00023 GTP-binding protein; 99.9 4.3E-26 9.2E-31 153.6 10.9 104 3-107 18-135 (334)
41 KOG0091 GTPase Rab39, small G 99.9 1.7E-27 3.8E-32 145.1 3.6 103 5-108 7-111 (213)
42 cd04124 RabL2 RabL2 subfamily. 99.9 9.3E-26 2E-30 139.6 11.2 100 7-107 1-101 (161)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 5.5E-26 1.2E-30 141.3 10.0 101 5-106 2-103 (167)
44 cd01865 Rab3 Rab3 subfamily. 99.9 8.9E-26 1.9E-30 140.1 10.7 100 7-107 2-102 (165)
45 cd04135 Tc10 TC10 subfamily. 99.9 2.5E-25 5.3E-30 138.8 12.7 101 7-107 1-101 (174)
46 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.9E-26 1.5E-30 139.3 10.0 99 6-105 1-99 (162)
47 cd04119 RJL RJL (RabJ-Like) su 99.9 7.4E-26 1.6E-30 139.9 9.8 99 7-106 1-100 (168)
48 cd04110 Rab35 Rab35 subfamily. 99.9 1.3E-25 2.8E-30 143.4 10.8 103 4-107 4-107 (199)
49 cd04144 Ras2 Ras2 subfamily. 99.9 3.9E-26 8.6E-31 144.8 8.2 97 8-105 1-97 (190)
50 cd01870 RhoA_like RhoA-like su 99.9 3.3E-25 7.1E-30 138.4 12.0 101 6-106 1-101 (175)
51 cd00877 Ran Ran (Ras-related n 99.9 2.7E-25 5.9E-30 138.3 11.5 99 7-106 1-100 (166)
52 cd04116 Rab9 Rab9 subfamily. 99.9 2.2E-25 4.7E-30 138.7 11.0 101 3-104 2-103 (170)
53 cd01892 Miro2 Miro2 subfamily. 99.9 3.6E-25 7.7E-30 138.2 12.0 101 3-104 1-103 (169)
54 cd04143 Rhes_like Rhes_like su 99.9 9.4E-26 2E-30 148.4 9.7 98 7-105 1-98 (247)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2E-25 4.4E-30 138.4 10.1 100 6-106 2-102 (166)
56 cd04140 ARHI_like ARHI subfami 99.9 2.2E-25 4.8E-30 138.3 10.0 98 7-105 2-99 (165)
57 cd04109 Rab28 Rab28 subfamily. 99.9 1.9E-25 4.1E-30 144.2 10.0 100 7-107 1-102 (215)
58 cd04127 Rab27A Rab27a subfamil 99.9 1.8E-25 4E-30 140.2 9.7 102 4-106 2-114 (180)
59 cd04125 RabA_like RabA-like su 99.9 3.2E-25 6.9E-30 140.3 10.7 100 7-107 1-101 (188)
60 cd04111 Rab39 Rab39 subfamily. 99.9 2.7E-25 5.9E-30 143.2 10.3 101 5-106 1-103 (211)
61 cd04106 Rab23_lke Rab23-like s 99.9 3.1E-25 6.6E-30 136.8 10.0 99 7-106 1-102 (162)
62 cd04118 Rab24 Rab24 subfamily. 99.9 7.6E-25 1.6E-29 138.9 11.8 100 7-107 1-102 (193)
63 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.5E-25 9.8E-30 137.6 10.6 101 5-106 1-103 (170)
64 cd01864 Rab19 Rab19 subfamily. 99.9 4.5E-25 9.7E-30 136.8 10.1 101 5-106 2-103 (165)
65 cd01868 Rab11_like Rab11-like. 99.9 4.9E-25 1.1E-29 136.4 10.3 102 5-107 2-104 (165)
66 KOG0093 GTPase Rab3, small G p 99.9 2.7E-25 5.9E-30 133.5 8.4 100 5-105 20-120 (193)
67 smart00173 RAS Ras subfamily o 99.9 3.8E-25 8.2E-30 136.7 9.3 97 7-104 1-97 (164)
68 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.2E-25 1.6E-29 135.3 10.3 100 5-105 1-100 (164)
69 PLN03110 Rab GTPase; Provision 99.9 7.7E-25 1.7E-29 141.5 10.9 102 5-107 11-113 (216)
70 smart00176 RAN Ran (Ras-relate 99.9 6.4E-25 1.4E-29 140.5 9.8 95 12-107 1-96 (200)
71 PLN03108 Rab family protein; P 99.9 1.1E-24 2.5E-29 140.2 10.6 104 1-105 1-105 (210)
72 cd04103 Centaurin_gamma Centau 99.9 1.4E-24 2.9E-29 134.4 10.5 94 7-107 1-94 (158)
73 cd04113 Rab4 Rab4 subfamily. 99.9 1.4E-24 3E-29 134.0 10.2 98 7-105 1-99 (161)
74 cd00157 Rho Rho (Ras homology) 99.9 4.9E-24 1.1E-28 132.4 12.6 101 7-107 1-101 (171)
75 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-24 3.4E-29 134.9 10.1 101 5-106 3-104 (168)
76 cd01873 RhoBTB RhoBTB subfamil 99.9 3.5E-24 7.7E-29 136.6 11.7 100 6-107 2-117 (195)
77 cd04177 RSR1 RSR1 subgroup. R 99.9 2.2E-24 4.7E-29 134.2 10.5 100 6-106 1-100 (168)
78 KOG0088 GTPase Rab21, small G 99.9 1.2E-25 2.6E-30 136.6 4.4 105 4-109 11-116 (218)
79 cd01861 Rab6 Rab6 subfamily. 99.9 2.5E-24 5.4E-29 132.6 10.1 99 7-106 1-100 (161)
80 cd04112 Rab26 Rab26 subfamily. 99.9 2.3E-24 5E-29 136.8 10.1 100 7-107 1-102 (191)
81 cd04146 RERG_RasL11_like RERG/ 99.9 2.6E-24 5.6E-29 133.4 8.1 98 8-106 1-99 (165)
82 cd04101 RabL4 RabL4 (Rab-like4 99.9 6.6E-24 1.4E-28 131.2 9.7 100 7-107 1-104 (164)
83 cd01860 Rab5_related Rab5-rela 99.9 7.9E-24 1.7E-28 130.6 9.9 101 6-107 1-102 (163)
84 PTZ00132 GTP-binding nuclear p 99.9 1.7E-23 3.8E-28 134.9 11.3 103 2-105 5-108 (215)
85 PLN03118 Rab family protein; P 99.9 1.8E-23 3.8E-28 134.6 10.8 99 5-104 13-112 (211)
86 smart00175 RAB Rab subfamily o 99.9 1.5E-23 3.3E-28 129.3 9.8 99 7-106 1-100 (164)
87 cd04129 Rho2 Rho2 subfamily. 99.9 4.4E-23 9.4E-28 130.6 12.1 103 6-108 1-103 (187)
88 cd01863 Rab18 Rab18 subfamily. 99.9 3.3E-23 7.1E-28 127.7 10.7 99 7-106 1-100 (161)
89 cd01862 Rab7 Rab7 subfamily. 99.9 2.5E-23 5.5E-28 129.2 10.2 97 7-104 1-98 (172)
90 cd04126 Rab20 Rab20 subfamily. 99.9 2.6E-23 5.7E-28 134.7 10.5 92 7-102 1-92 (220)
91 cd01893 Miro1 Miro1 subfamily. 99.9 2.5E-23 5.5E-28 129.2 9.6 99 7-106 1-99 (166)
92 cd04142 RRP22 RRP22 subfamily. 99.9 5.2E-23 1.1E-27 131.5 10.7 98 7-105 1-107 (198)
93 cd04123 Rab21 Rab21 subfamily. 99.9 5.7E-23 1.2E-27 126.3 10.4 99 7-106 1-100 (162)
94 cd04114 Rab30 Rab30 subfamily. 99.9 8.1E-23 1.8E-27 126.8 11.1 105 1-106 1-107 (169)
95 KOG0097 GTPase Rab14, small G 99.9 1.2E-23 2.5E-28 126.1 6.4 103 4-107 9-112 (215)
96 KOG0083 GTPase Rab26/Rab37, sm 99.9 4.1E-25 9E-30 131.0 -0.1 97 10-107 1-99 (192)
97 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.4E-23 5.1E-28 129.4 7.6 94 8-105 1-94 (164)
98 KOG0395 Ras-related GTPase [Ge 99.9 2.3E-23 4.9E-28 132.9 7.3 99 5-104 2-100 (196)
99 cd04147 Ras_dva Ras-dva subfam 99.9 6.2E-23 1.4E-27 130.9 8.9 97 8-105 1-97 (198)
100 cd04149 Arf6 Arf6 subfamily. 99.9 3.8E-23 8.3E-28 128.9 7.2 97 4-104 7-103 (168)
101 cd04148 RGK RGK subfamily. Th 99.9 1.8E-22 3.8E-27 131.0 10.3 97 7-106 1-100 (221)
102 smart00177 ARF ARF-like small 99.9 6.2E-23 1.3E-27 128.7 7.9 95 4-102 11-105 (175)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.9 7.4E-23 1.6E-27 126.6 8.0 93 7-103 1-93 (159)
104 PTZ00133 ADP-ribosylation fact 99.9 6.1E-23 1.3E-27 129.6 7.5 96 4-103 15-110 (182)
105 KOG0081 GTPase Rab27, small G 99.9 4.3E-25 9.3E-30 134.3 -2.5 102 5-107 8-119 (219)
106 PLN00223 ADP-ribosylation fact 99.9 8.1E-23 1.8E-27 128.9 7.6 93 4-100 15-107 (181)
107 cd04139 RalA_RalB RalA/RalB su 99.9 2.9E-22 6.3E-27 123.4 9.5 97 7-104 1-97 (164)
108 PF08477 Miro: Miro-like prote 99.9 2.3E-22 5.1E-27 118.6 8.4 99 8-106 1-104 (119)
109 cd00154 Rab Rab family. Rab G 99.9 6.3E-22 1.4E-26 120.7 9.3 100 7-107 1-101 (159)
110 COG1100 GTPase SAR1 and relate 99.9 4E-22 8.6E-27 128.5 8.7 104 5-108 4-108 (219)
111 cd00876 Ras Ras family. The R 99.9 4.3E-22 9.4E-27 122.1 8.0 96 8-104 1-96 (160)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.7E-22 1.2E-26 125.1 8.3 98 5-104 2-101 (183)
113 cd04137 RheB Rheb (Ras Homolog 99.9 9.4E-22 2E-26 123.4 9.0 96 7-103 2-97 (180)
114 cd04158 ARD1 ARD1 subfamily. 99.9 6.8E-22 1.5E-26 123.2 7.7 92 8-104 1-92 (169)
115 cd04161 Arl2l1_Arl13_like Arl2 99.9 6.6E-22 1.4E-26 123.2 6.5 93 8-105 1-93 (167)
116 KOG4252 GTP-binding protein [S 99.9 2E-23 4.2E-28 129.3 -2.3 100 5-105 19-119 (246)
117 cd04154 Arl2 Arl2 subfamily. 99.8 6.4E-21 1.4E-25 119.1 8.5 96 4-104 12-107 (173)
118 cd04157 Arl6 Arl6 subfamily. 99.8 3.2E-21 6.9E-26 118.8 6.2 93 8-104 1-94 (162)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 7.6E-21 1.6E-25 119.0 7.6 96 4-103 13-108 (174)
120 KOG1673 Ras GTPases [General f 99.8 3.7E-21 8E-26 116.7 5.7 103 5-108 19-122 (205)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.2E-20 6.8E-25 114.3 7.8 93 8-104 1-93 (160)
122 cd04151 Arl1 Arl1 subfamily. 99.8 2.1E-20 4.5E-25 115.1 6.6 91 8-102 1-91 (158)
123 KOG0073 GTP-binding ADP-ribosy 99.8 4.6E-20 1E-24 112.5 7.2 94 4-101 14-107 (185)
124 KOG0070 GTP-binding ADP-ribosy 99.8 1.9E-20 4.1E-25 116.1 5.6 98 3-104 14-111 (181)
125 PF00025 Arf: ADP-ribosylation 99.8 7.3E-20 1.6E-24 114.9 7.4 95 3-101 11-105 (175)
126 cd04159 Arl10_like Arl10-like 99.8 1.1E-19 2.4E-24 110.8 7.7 90 9-102 2-91 (159)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.8 8.4E-20 1.8E-24 112.2 6.8 91 8-103 1-91 (158)
128 smart00178 SAR Sar1p-like memb 99.8 1.9E-19 4E-24 113.8 8.1 94 4-102 15-108 (184)
129 cd00879 Sar1 Sar1 subfamily. 99.8 3.1E-19 6.8E-24 112.8 8.5 95 4-103 17-111 (190)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.8 7.5E-19 1.6E-23 108.8 7.6 92 8-103 1-98 (167)
131 TIGR00231 small_GTP small GTP- 99.8 6.9E-18 1.5E-22 102.4 8.6 100 6-105 1-102 (161)
132 cd04105 SR_beta Signal recogni 99.7 7.5E-18 1.6E-22 108.1 8.0 94 8-102 2-98 (203)
133 KOG0071 GTP-binding ADP-ribosy 99.7 7.5E-18 1.6E-22 100.8 7.0 98 4-105 15-112 (180)
134 cd01890 LepA LepA subfamily. 99.7 4.7E-18 1E-22 106.3 6.5 94 8-102 2-114 (179)
135 cd04155 Arl3 Arl3 subfamily. 99.7 2.4E-17 5.2E-22 102.6 8.4 92 4-99 12-103 (173)
136 KOG0074 GTP-binding ADP-ribosy 99.7 3.3E-17 7.2E-22 98.2 8.1 98 4-104 15-112 (185)
137 KOG0075 GTP-binding ADP-ribosy 99.7 2.6E-18 5.7E-23 103.4 1.1 90 5-97 19-108 (186)
138 cd04171 SelB SelB subfamily. 99.7 8.3E-17 1.8E-21 99.0 7.7 87 8-96 2-96 (164)
139 KOG1707 Predicted Ras related/ 99.7 3.7E-17 7.9E-22 115.9 5.2 104 4-108 7-110 (625)
140 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 1.7E-16 3.6E-21 99.1 6.9 100 5-105 9-109 (216)
141 cd01898 Obg Obg subfamily. Th 99.7 1.6E-16 3.4E-21 98.5 6.5 95 8-105 2-106 (170)
142 cd01891 TypA_BipA TypA (tyrosi 99.7 9.7E-17 2.1E-21 102.0 5.2 83 8-90 4-101 (194)
143 cd00882 Ras_like_GTPase Ras-li 99.7 5.5E-16 1.2E-20 93.0 8.0 89 11-100 1-90 (157)
144 PTZ00099 rab6; Provisional 99.7 6.3E-16 1.4E-20 97.2 7.8 77 29-106 3-80 (176)
145 TIGR02528 EutP ethanolamine ut 99.7 1.2E-16 2.6E-21 96.7 4.3 79 8-102 2-85 (142)
146 KOG3883 Ras family small GTPas 99.7 1.2E-15 2.6E-20 92.6 8.4 92 5-96 8-103 (198)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 8.6E-16 1.9E-20 95.0 8.0 89 8-96 2-95 (168)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.2E-15 4.7E-20 106.3 9.8 95 5-104 202-306 (442)
149 cd01878 HflX HflX subfamily. 99.6 1.4E-15 3.1E-20 97.2 6.3 95 5-103 40-145 (204)
150 cd01897 NOG NOG1 is a nucleola 99.6 8E-15 1.7E-19 90.8 9.0 95 8-106 2-109 (168)
151 PRK15494 era GTPase Era; Provi 99.6 5.1E-15 1.1E-19 101.5 8.2 99 1-104 47-156 (339)
152 KOG4423 GTP-binding protein-li 99.6 2.8E-18 6E-23 106.9 -7.4 101 5-106 24-126 (229)
153 PRK04213 GTP-binding protein; 99.6 8.8E-16 1.9E-20 97.9 3.3 81 4-89 7-102 (201)
154 TIGR03598 GTPase_YsxC ribosome 99.6 6.5E-15 1.4E-19 92.6 6.5 92 2-96 14-119 (179)
155 PRK05291 trmE tRNA modificatio 99.6 1.6E-14 3.5E-19 102.2 9.2 95 5-102 214-318 (449)
156 TIGR01393 lepA GTP-binding pro 99.6 5.1E-15 1.1E-19 107.6 6.7 95 7-102 4-117 (595)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2E-14 4.4E-19 87.6 7.7 88 7-96 2-99 (157)
158 KOG0076 GTP-binding ADP-ribosy 99.6 1.8E-15 3.9E-20 93.4 2.9 97 1-100 12-115 (197)
159 TIGR03156 GTP_HflX GTP-binding 99.5 1.4E-14 3.1E-19 99.6 6.8 94 5-101 188-291 (351)
160 PRK03003 GTP-binding protein D 99.5 3.3E-14 7.2E-19 101.2 7.8 90 5-96 210-312 (472)
161 cd01879 FeoB Ferrous iron tran 99.5 6.9E-14 1.5E-18 85.6 7.9 82 11-94 1-91 (158)
162 cd01895 EngA2 EngA2 subfamily. 99.5 9.4E-14 2E-18 85.8 7.7 89 6-96 2-103 (174)
163 TIGR00487 IF-2 translation ini 99.5 1.4E-13 3E-18 100.0 9.6 91 5-96 86-180 (587)
164 TIGR03594 GTPase_EngA ribosome 99.5 1.9E-13 4E-18 96.1 10.0 90 5-96 171-273 (429)
165 PRK00454 engB GTP-binding prot 99.5 6.3E-14 1.4E-18 88.8 6.7 89 3-93 21-122 (196)
166 cd01894 EngA1 EngA1 subfamily. 99.5 5.6E-14 1.2E-18 85.7 6.2 82 10-93 1-92 (157)
167 cd04167 Snu114p Snu114p subfam 99.5 1.9E-14 4.2E-19 92.8 4.2 88 8-95 2-112 (213)
168 cd00881 GTP_translation_factor 99.5 4.5E-14 9.7E-19 88.6 5.7 87 8-94 1-102 (189)
169 PRK03003 GTP-binding protein D 99.5 4.1E-14 8.8E-19 100.7 6.1 86 6-93 38-133 (472)
170 PRK00093 GTP-binding protein D 99.5 1.4E-13 3.1E-18 96.9 8.3 94 7-103 2-107 (435)
171 cd01881 Obg_like The Obg-like 99.5 2.1E-13 4.6E-18 84.7 7.6 92 11-104 1-106 (176)
172 PRK12299 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.5E-18 94.6 6.6 98 7-106 159-264 (335)
173 cd04163 Era Era subfamily. Er 99.5 4.4E-13 9.6E-18 82.0 7.5 86 5-90 2-95 (168)
174 cd01889 SelB_euk SelB subfamil 99.4 1.9E-13 4.2E-18 86.8 5.8 86 7-92 1-106 (192)
175 TIGR00436 era GTP-binding prot 99.4 3.3E-13 7.2E-18 90.0 7.1 85 8-94 2-96 (270)
176 KOG0072 GTP-binding ADP-ribosy 99.4 2.4E-14 5.1E-19 86.2 1.4 96 4-103 16-111 (182)
177 CHL00189 infB translation init 99.4 2.7E-13 5.7E-18 100.3 7.2 92 5-96 243-340 (742)
178 cd04168 TetM_like Tet(M)-like 99.4 1.4E-13 3E-18 90.3 4.6 86 8-93 1-103 (237)
179 PRK05433 GTP-binding protein L 99.4 3.4E-13 7.4E-18 98.3 6.6 99 2-101 3-120 (600)
180 PRK10218 GTP-binding protein; 99.4 7.4E-13 1.6E-17 96.5 8.0 87 5-91 4-105 (607)
181 PRK09518 bifunctional cytidyla 99.4 6E-13 1.3E-17 98.8 7.6 90 5-96 449-551 (712)
182 PRK05306 infB translation init 99.4 1.5E-12 3.2E-17 97.0 9.7 91 4-96 288-382 (787)
183 cd01850 CDC_Septin CDC/Septin. 99.4 4.2E-12 9.1E-17 85.0 10.9 60 5-64 3-73 (276)
184 TIGR00491 aIF-2 translation in 99.4 7E-13 1.5E-17 96.4 7.6 89 8-96 6-114 (590)
185 cd01896 DRG The developmentall 99.4 5.2E-12 1.1E-16 82.7 10.9 87 8-96 2-97 (233)
186 TIGR02729 Obg_CgtA Obg family 99.4 7.5E-13 1.6E-17 90.5 6.6 97 7-105 158-265 (329)
187 PRK11058 GTPase HflX; Provisio 99.4 5.5E-13 1.2E-17 93.8 6.1 97 7-104 198-305 (426)
188 TIGR00475 selB selenocysteine- 99.4 1.8E-12 3.8E-17 94.4 8.8 88 7-96 1-95 (581)
189 cd04169 RF3 RF3 subfamily. Pe 99.4 6.1E-13 1.3E-17 88.6 5.5 84 8-91 4-108 (267)
190 TIGR03594 GTPase_EngA ribosome 99.4 1.2E-12 2.7E-17 92.0 7.0 83 8-92 1-93 (429)
191 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 1.2E-12 2.6E-17 85.4 6.4 83 8-91 1-90 (232)
192 PRK15467 ethanolamine utilizat 99.4 6.6E-13 1.4E-17 82.1 4.1 73 8-93 3-80 (158)
193 PRK00093 GTP-binding protein D 99.4 7.7E-12 1.7E-16 88.2 10.0 90 5-96 172-274 (435)
194 smart00010 small_GTPase Small 99.4 2.8E-12 6.1E-17 75.5 6.4 69 7-104 1-70 (124)
195 PRK04004 translation initiatio 99.4 5.9E-12 1.3E-16 91.7 9.1 92 5-96 5-116 (586)
196 PRK12317 elongation factor 1-a 99.3 6.1E-12 1.3E-16 88.6 8.3 89 1-89 1-119 (425)
197 cd01885 EF2 EF2 (for archaea a 99.3 4.8E-12 1E-16 82.3 7.2 89 8-96 2-115 (222)
198 PF01926 MMR_HSR1: 50S ribosom 99.3 1.3E-11 2.8E-16 72.5 8.4 86 8-96 1-100 (116)
199 COG2229 Predicted GTPase [Gene 99.3 5.9E-12 1.3E-16 78.5 6.8 89 3-93 7-107 (187)
200 cd04104 p47_IIGP_like p47 (47- 99.3 2.7E-12 5.8E-17 82.0 5.3 80 6-85 1-88 (197)
201 PRK13351 elongation factor G; 99.3 1.1E-12 2.5E-17 97.0 4.0 98 4-102 6-120 (687)
202 PRK00089 era GTPase Era; Revie 99.3 7.6E-12 1.7E-16 84.1 7.6 83 5-89 4-96 (292)
203 PRK12297 obgE GTPase CgtA; Rev 99.3 7.1E-12 1.5E-16 88.1 7.7 96 8-106 160-267 (424)
204 cd00880 Era_like Era (E. coli 99.3 8.7E-12 1.9E-16 75.4 6.9 85 11-96 1-94 (163)
205 cd01876 YihA_EngB The YihA (En 99.3 5E-12 1.1E-16 77.5 5.9 93 8-104 1-109 (170)
206 cd01899 Ygr210 Ygr210 subfamil 99.3 6.9E-12 1.5E-16 85.4 6.4 81 9-89 1-111 (318)
207 cd04170 EF-G_bact Elongation f 99.3 4E-12 8.6E-17 84.7 5.0 88 8-95 1-105 (268)
208 PRK09518 bifunctional cytidyla 99.3 9.4E-12 2E-16 92.5 6.7 84 5-90 274-367 (712)
209 TIGR00483 EF-1_alpha translati 99.3 1.3E-11 2.8E-16 87.0 6.8 91 3-93 4-124 (426)
210 PF09439 SRPRB: Signal recogni 99.3 1.4E-12 3E-17 82.1 1.1 96 6-103 3-102 (181)
211 cd01888 eIF2_gamma eIF2-gamma 99.2 3.5E-11 7.5E-16 77.2 7.0 46 54-100 83-132 (203)
212 KOG0077 Vesicle coat complex C 99.2 8.4E-12 1.8E-16 76.8 3.4 92 5-100 19-110 (193)
213 PRK00741 prfC peptide chain re 99.2 1.5E-11 3.4E-16 88.5 5.3 86 5-90 9-115 (526)
214 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.4E-11 3E-16 79.3 4.5 83 8-90 1-113 (208)
215 TIGR01394 TypA_BipA GTP-bindin 99.2 2.6E-11 5.6E-16 88.5 6.2 83 8-90 3-100 (594)
216 PRK09554 feoB ferrous iron tra 99.2 2E-10 4.4E-15 85.9 10.4 87 5-93 2-101 (772)
217 PRK12298 obgE GTPase CgtA; Rev 99.2 5.1E-11 1.1E-15 83.2 6.1 97 8-106 161-268 (390)
218 KOG1423 Ras-like GTPase ERA [C 99.2 1.7E-10 3.8E-15 77.4 8.0 86 4-89 70-167 (379)
219 TIGR00490 aEF-2 translation el 99.2 1.9E-11 4.1E-16 90.9 3.8 86 5-90 18-122 (720)
220 PF02421 FeoB_N: Ferrous iron 99.1 3.4E-10 7.4E-15 69.9 7.8 88 7-96 1-97 (156)
221 PRK09602 translation-associate 99.1 2.1E-10 4.7E-15 80.2 7.8 82 7-88 2-113 (396)
222 TIGR00503 prfC peptide chain r 99.1 1E-10 2.2E-15 84.4 6.2 86 5-90 10-116 (527)
223 TIGR00991 3a0901s02IAP34 GTP-b 99.1 2.1E-10 4.6E-15 77.6 7.2 83 4-88 36-129 (313)
224 COG3596 Predicted GTPase [Gene 99.1 2.8E-11 6E-16 80.0 2.9 86 4-91 37-131 (296)
225 cd01886 EF-G Elongation factor 99.1 1E-10 2.2E-15 78.2 5.5 83 8-90 1-100 (270)
226 COG0486 ThdF Predicted GTPase 99.1 4.2E-10 9.2E-15 78.9 8.7 84 5-90 216-309 (454)
227 PF00009 GTP_EFTU: Elongation 99.1 8.9E-11 1.9E-15 74.4 4.6 87 5-92 2-108 (188)
228 PRK12296 obgE GTPase CgtA; Rev 99.1 2.9E-10 6.4E-15 81.3 7.5 82 6-89 159-248 (500)
229 TIGR00437 feoB ferrous iron tr 99.1 5.6E-10 1.2E-14 81.6 8.9 78 13-92 1-87 (591)
230 cd01884 EF_Tu EF-Tu subfamily. 99.1 2.7E-10 5.8E-15 72.8 6.3 85 6-90 2-101 (195)
231 cd01853 Toc34_like Toc34-like 99.1 6.2E-10 1.3E-14 73.6 7.8 84 4-89 29-126 (249)
232 KOG1707 Predicted Ras related/ 99.1 1.1E-09 2.3E-14 78.6 9.4 94 3-98 422-516 (625)
233 TIGR03680 eif2g_arch translati 99.1 1.6E-10 3.5E-15 81.1 5.2 93 4-96 2-126 (406)
234 TIGR00485 EF-Tu translation el 99.1 3.5E-10 7.6E-15 79.1 6.4 94 3-96 9-120 (394)
235 COG1159 Era GTPase [General fu 99.1 5.5E-10 1.2E-14 74.6 6.9 87 2-90 2-98 (298)
236 PRK10512 selenocysteinyl-tRNA- 99.1 8.9E-10 1.9E-14 80.8 8.3 87 8-96 2-96 (614)
237 PRK04000 translation initiatio 99.1 3.9E-10 8.4E-15 79.3 6.1 93 3-96 6-131 (411)
238 PRK12735 elongation factor Tu; 99.1 6.5E-10 1.4E-14 77.9 7.0 87 4-90 10-111 (396)
239 TIGR00484 EF-G translation elo 99.0 2.9E-10 6.3E-15 84.4 5.3 92 5-96 9-117 (689)
240 cd01883 EF1_alpha Eukaryotic e 99.0 3.1E-10 6.6E-15 73.6 4.8 83 8-90 1-113 (219)
241 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 2.5E-09 5.5E-14 68.1 8.9 81 7-89 1-95 (196)
242 PRK12736 elongation factor Tu; 99.0 1.1E-09 2.5E-14 76.6 6.5 87 3-89 9-110 (394)
243 PLN03126 Elongation factor Tu; 99.0 1.2E-09 2.6E-14 78.1 6.6 88 3-90 78-180 (478)
244 CHL00071 tufA elongation facto 99.0 1.8E-09 4E-14 75.9 6.9 88 3-90 9-111 (409)
245 PF10662 PduV-EutP: Ethanolami 99.0 8.6E-10 1.9E-14 67.0 4.3 72 8-92 3-78 (143)
246 PF04548 AIG1: AIG1 family; I 99.0 1.4E-09 3E-14 70.3 5.5 81 7-89 1-95 (212)
247 PF05783 DLIC: Dynein light in 99.0 3.3E-09 7.2E-14 75.6 7.6 100 6-108 25-131 (472)
248 cd00066 G-alpha G protein alph 98.9 3.9E-09 8.4E-14 72.1 7.0 39 52-90 159-197 (317)
249 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.2E-09 1.3E-13 63.2 6.4 53 8-64 85-138 (141)
250 PF00735 Septin: Septin; Inte 98.9 1.3E-08 2.7E-13 68.5 8.4 58 6-63 4-72 (281)
251 COG1160 Predicted GTPases [Gen 98.9 3.9E-09 8.4E-14 74.0 5.8 81 7-89 4-95 (444)
252 PLN00043 elongation factor 1-a 98.9 2.7E-09 5.8E-14 75.8 5.1 87 3-89 4-120 (447)
253 COG1163 DRG Predicted GTPase [ 98.9 3.2E-08 6.9E-13 67.1 9.8 90 5-96 62-160 (365)
254 PRK00049 elongation factor Tu; 98.9 9.1E-09 2E-13 72.2 7.5 87 4-90 10-111 (396)
255 KOG3886 GTP-binding protein [S 98.9 5E-10 1.1E-14 72.7 1.0 84 6-91 4-95 (295)
256 cd04165 GTPBP1_like GTPBP1-lik 98.9 3.3E-09 7.1E-14 69.2 4.7 83 8-90 1-122 (224)
257 COG1160 Predicted GTPases [Gen 98.9 3.2E-08 7E-13 69.5 9.5 90 5-96 177-279 (444)
258 PRK05124 cysN sulfate adenylyl 98.9 6.7E-09 1.4E-13 74.3 6.3 88 3-90 24-143 (474)
259 TIGR02034 CysN sulfate adenyly 98.8 3.3E-09 7.2E-14 74.6 4.1 84 7-90 1-116 (406)
260 PTZ00141 elongation factor 1- 98.8 1.3E-08 2.8E-13 72.4 7.0 88 3-90 4-121 (446)
261 PRK12739 elongation factor G; 98.8 5.7E-09 1.2E-13 77.6 5.1 88 5-92 7-111 (691)
262 PLN03127 Elongation factor Tu; 98.8 2.4E-08 5.2E-13 71.0 7.6 87 4-90 59-160 (447)
263 KOG0705 GTPase-activating prot 98.8 3.8E-09 8.3E-14 75.7 3.5 88 4-97 28-115 (749)
264 PRK12740 elongation factor G; 98.8 3.3E-09 7.1E-14 78.6 3.1 89 12-101 1-106 (668)
265 COG5256 TEF1 Translation elong 98.8 2.6E-08 5.7E-13 69.2 6.8 90 2-91 3-122 (428)
266 KOG1191 Mitochondrial GTPase [ 98.8 3.3E-08 7.1E-13 70.0 7.3 81 5-87 267-358 (531)
267 PTZ00258 GTP-binding protein; 98.8 5E-08 1.1E-12 68.2 7.6 83 5-88 20-126 (390)
268 cd01859 MJ1464 MJ1464. This f 98.8 5.8E-08 1.3E-12 59.7 7.1 55 5-63 100-155 (156)
269 cd01856 YlqF YlqF. Proteins o 98.7 6.2E-08 1.3E-12 60.6 7.1 56 5-64 114-170 (171)
270 TIGR00993 3a0901s04IAP86 chlor 98.7 5.1E-08 1.1E-12 71.7 7.3 82 5-89 117-213 (763)
271 smart00275 G_alpha G protein a 98.7 2.3E-08 4.9E-13 69.0 5.1 36 54-89 184-219 (342)
272 KOG3905 Dynein light intermedi 98.7 3.9E-08 8.5E-13 67.0 6.0 100 6-108 52-158 (473)
273 PF05049 IIGP: Interferon-indu 98.7 9.5E-09 2.1E-13 71.2 3.0 82 5-86 34-123 (376)
274 PRK00007 elongation factor G; 98.7 2.6E-08 5.6E-13 74.2 5.3 90 5-94 9-115 (693)
275 PRK05506 bifunctional sulfate 98.7 4.2E-08 9E-13 72.5 6.3 87 4-90 22-140 (632)
276 PRK09601 GTP-binding protein Y 98.7 1.3E-07 2.7E-12 65.6 7.9 81 7-88 3-107 (364)
277 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.3E-07 2.8E-12 58.3 7.3 55 5-63 101-156 (157)
278 PLN00116 translation elongatio 98.7 2.1E-08 4.6E-13 76.0 4.4 101 5-106 18-149 (843)
279 PTZ00416 elongation factor 2; 98.7 3.1E-08 6.8E-13 75.1 5.2 88 5-92 18-130 (836)
280 COG0218 Predicted GTPase [Gene 98.7 7.8E-08 1.7E-12 61.3 5.5 85 3-90 21-119 (200)
281 COG1084 Predicted GTPase [Gene 98.6 2.1E-07 4.5E-12 63.2 7.5 82 5-90 167-260 (346)
282 cd04178 Nucleostemin_like Nucl 98.6 2E-07 4.3E-12 58.6 6.9 54 6-63 117-171 (172)
283 TIGR03596 GTPase_YlqF ribosome 98.6 2.2E-07 4.8E-12 62.3 7.5 56 5-64 117-173 (276)
284 cd01900 YchF YchF subfamily. 98.6 1.4E-07 3E-12 63.2 6.2 79 9-88 1-103 (274)
285 PRK07560 elongation factor EF- 98.6 8.5E-08 1.9E-12 71.9 5.3 87 6-92 20-125 (731)
286 KOG0090 Signal recognition par 98.6 2.5E-08 5.3E-13 64.0 2.0 93 7-103 39-135 (238)
287 PRK09563 rbgA GTPase YlqF; Rev 98.6 5.1E-07 1.1E-11 60.9 8.2 57 5-65 120-177 (287)
288 COG0480 FusA Translation elong 98.5 1.3E-07 2.8E-12 70.3 4.5 105 4-109 8-130 (697)
289 COG5019 CDC3 Septin family pro 98.5 8.1E-07 1.8E-11 61.2 7.5 62 5-66 22-94 (373)
290 cd01855 YqeH YqeH. YqeH is an 98.5 4.6E-07 1E-11 57.4 5.8 25 6-30 127-151 (190)
291 COG0370 FeoB Fe2+ transport sy 98.5 1.6E-06 3.6E-11 63.6 9.1 86 5-92 2-96 (653)
292 cd01882 BMS1 Bms1. Bms1 is an 98.4 7.3E-07 1.6E-11 58.2 5.9 79 5-90 38-116 (225)
293 PF00350 Dynamin_N: Dynamin fa 98.4 1.8E-06 3.9E-11 53.4 7.4 49 55-104 102-154 (168)
294 PF03193 DUF258: Protein of un 98.4 3E-07 6.6E-12 57.1 3.5 24 7-30 36-59 (161)
295 KOG1486 GTP-binding protein DR 98.4 3.6E-06 7.8E-11 55.8 8.4 94 6-102 62-164 (364)
296 KOG2655 Septin family protein 98.4 1.9E-06 4.1E-11 59.6 7.2 60 6-65 21-90 (366)
297 COG1161 Predicted GTPases [Gen 98.3 2.1E-06 4.5E-11 58.9 6.7 57 4-64 130-187 (322)
298 PRK12288 GTPase RsgA; Reviewed 98.3 7.2E-07 1.6E-11 61.7 4.4 57 9-68 208-271 (347)
299 cd01849 YlqF_related_GTPase Yl 98.3 3.8E-06 8.3E-11 51.7 6.9 54 5-63 99-154 (155)
300 TIGR00092 GTP-binding protein 98.2 5.2E-06 1.1E-10 57.8 6.8 82 7-89 3-109 (368)
301 PRK12289 GTPase RsgA; Reviewed 98.2 4.1E-06 8.9E-11 58.1 5.9 22 9-30 175-196 (352)
302 KOG0082 G-protein alpha subuni 98.2 1.4E-06 2.9E-11 60.1 3.4 38 54-91 195-232 (354)
303 KOG1547 Septin CDC10 and relat 98.2 3E-06 6.6E-11 55.8 4.9 64 3-66 43-116 (336)
304 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.3E-06 4.9E-11 57.8 4.3 25 7-31 162-186 (287)
305 COG1162 Predicted GTPases [Gen 98.2 5.1E-06 1.1E-10 56.2 5.7 58 8-68 166-230 (301)
306 TIGR00157 ribosome small subun 98.1 6.8E-06 1.5E-10 54.4 5.7 23 8-30 122-144 (245)
307 KOG0468 U5 snRNP-specific prot 98.1 4E-06 8.7E-11 61.9 4.9 93 4-96 126-239 (971)
308 TIGR03597 GTPase_YqeH ribosome 98.1 5.2E-06 1.1E-10 57.8 5.0 24 7-30 155-178 (360)
309 COG0532 InfB Translation initi 98.1 2E-05 4.3E-10 56.6 7.9 91 6-96 5-100 (509)
310 KOG0458 Elongation factor 1 al 98.1 2.4E-05 5.2E-10 56.8 8.1 86 4-89 175-290 (603)
311 COG4917 EutP Ethanolamine util 98.1 2E-06 4.4E-11 51.1 1.8 24 8-31 3-26 (148)
312 cd01851 GBP Guanylate-binding 98.1 1.8E-05 3.8E-10 51.7 6.3 62 5-66 6-72 (224)
313 PRK14845 translation initiatio 98.1 1.4E-05 3.1E-10 61.9 6.7 41 56-96 528-571 (1049)
314 KOG3887 Predicted small GTPase 98.1 5.5E-06 1.2E-10 54.7 3.8 88 8-96 29-122 (347)
315 KOG0462 Elongation factor-type 98.1 2.2E-05 4.7E-10 56.9 7.1 96 7-102 61-173 (650)
316 COG0012 Predicted GTPase, prob 98.0 4.7E-05 1E-09 52.9 8.1 84 6-89 2-109 (372)
317 PRK00098 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 55.0 4.4 24 7-30 165-188 (298)
318 KOG4273 Uncharacterized conser 97.9 9.2E-05 2E-09 49.3 7.9 94 7-104 5-104 (418)
319 COG2262 HflX GTPases [General 97.9 3.6E-05 7.7E-10 53.9 6.3 90 6-96 192-290 (411)
320 PRK13796 GTPase YqeH; Provisio 97.9 2.1E-05 4.6E-10 54.8 5.2 23 7-29 161-183 (365)
321 PF13207 AAA_17: AAA domain; P 97.8 1.6E-05 3.4E-10 46.7 2.9 22 8-29 1-22 (121)
322 PRK08118 topology modulation p 97.8 1.7E-05 3.7E-10 49.6 3.2 22 8-29 3-24 (167)
323 TIGR02836 spore_IV_A stage IV 97.8 0.00011 2.4E-09 52.1 7.4 25 5-29 16-40 (492)
324 COG0563 Adk Adenylate kinase a 97.8 1.6E-05 3.5E-10 50.2 3.0 23 7-29 1-23 (178)
325 PTZ00327 eukaryotic translatio 97.8 1.9E-05 4E-10 56.7 3.5 88 3-90 31-153 (460)
326 TIGR00235 udk uridine kinase. 97.8 2.7E-05 5.8E-10 50.1 3.9 28 1-28 1-28 (207)
327 KOG1489 Predicted GTP-binding 97.8 0.00019 4.1E-09 49.1 7.6 88 8-97 198-297 (366)
328 COG4108 PrfC Peptide chain rel 97.8 2.6E-05 5.7E-10 55.2 3.5 86 5-90 11-117 (528)
329 COG1217 TypA Predicted membran 97.8 8.5E-05 1.8E-09 53.2 6.0 82 8-89 7-103 (603)
330 PF13671 AAA_33: AAA domain; P 97.8 2E-05 4.4E-10 47.4 2.7 19 9-27 2-20 (143)
331 PRK07261 topology modulation p 97.8 2.8E-05 6.1E-10 48.7 3.2 21 8-28 2-22 (171)
332 KOG1145 Mitochondrial translat 97.7 0.00015 3.3E-09 52.7 7.0 86 8-96 155-246 (683)
333 COG1126 GlnQ ABC-type polar am 97.7 4.1E-05 8.9E-10 49.8 3.7 25 8-32 30-54 (240)
334 KOG0464 Elongation factor G [T 97.7 1E-05 2.2E-10 57.2 0.6 101 8-109 39-156 (753)
335 KOG1491 Predicted GTP-binding 97.7 0.00028 6.1E-09 48.7 7.1 84 5-89 19-126 (391)
336 COG5192 BMS1 GTP-binding prote 97.7 5.9E-05 1.3E-09 55.3 4.0 77 4-88 67-144 (1077)
337 COG1618 Predicted nucleotide k 97.7 0.00026 5.6E-09 44.1 6.3 57 4-62 3-59 (179)
338 PRK10751 molybdopterin-guanine 97.7 6.9E-05 1.5E-09 47.2 3.8 28 1-28 1-28 (173)
339 PF00004 AAA: ATPase family as 97.7 4.9E-05 1.1E-09 44.9 3.0 21 9-29 1-21 (132)
340 PF13521 AAA_28: AAA domain; P 97.6 3.9E-05 8.5E-10 47.5 2.5 22 8-29 1-22 (163)
341 KOG3859 Septins (P-loop GTPase 97.6 0.00024 5.2E-09 48.0 6.3 60 4-63 40-104 (406)
342 KOG0461 Selenocysteine-specifi 97.6 0.00021 4.6E-09 49.6 6.0 88 3-90 4-106 (522)
343 COG0481 LepA Membrane GTPase L 97.6 0.0003 6.5E-09 50.6 6.7 95 7-101 10-123 (603)
344 smart00382 AAA ATPases associa 97.6 7.8E-05 1.7E-09 43.8 3.3 27 7-33 3-29 (148)
345 COG1116 TauB ABC-type nitrate/ 97.6 6.5E-05 1.4E-09 49.6 3.0 22 9-30 32-53 (248)
346 COG3839 MalK ABC-type sugar tr 97.6 6.2E-05 1.3E-09 51.9 3.0 22 9-30 32-53 (338)
347 PRK06217 hypothetical protein; 97.6 8.1E-05 1.7E-09 47.0 3.2 23 7-29 2-24 (183)
348 cd02019 NK Nucleoside/nucleoti 97.6 9.4E-05 2E-09 39.5 3.0 21 9-29 2-22 (69)
349 PRK14530 adenylate kinase; Pro 97.6 0.0001 2.2E-09 47.7 3.6 20 8-27 5-24 (215)
350 PRK10078 ribose 1,5-bisphospho 97.6 8.1E-05 1.8E-09 47.1 3.0 22 8-29 4-25 (186)
351 PF00005 ABC_tran: ABC transpo 97.5 7.7E-05 1.7E-09 44.6 2.8 23 8-30 13-35 (137)
352 PF07728 AAA_5: AAA domain (dy 97.5 8.3E-05 1.8E-09 44.7 2.9 22 8-29 1-22 (139)
353 KOG1954 Endocytosis/signaling 97.5 0.00022 4.8E-09 49.9 5.2 89 8-96 60-203 (532)
354 PRK05480 uridine/cytidine kina 97.5 0.00014 3.1E-09 46.7 3.9 25 4-28 4-28 (209)
355 TIGR02322 phosphon_PhnN phosph 97.5 9.6E-05 2.1E-09 46.3 3.0 22 8-29 3-24 (179)
356 PF03266 NTPase_1: NTPase; In 97.5 0.00011 2.3E-09 46.1 3.1 21 8-28 1-21 (168)
357 PF13555 AAA_29: P-loop contai 97.5 0.00014 3E-09 38.2 3.0 21 8-28 25-45 (62)
358 COG1136 SalX ABC-type antimicr 97.5 9.5E-05 2.1E-09 48.4 2.9 23 8-30 33-55 (226)
359 PRK03839 putative kinase; Prov 97.5 0.00011 2.3E-09 46.2 3.1 22 8-29 2-23 (180)
360 PTZ00088 adenylate kinase 1; P 97.5 0.00013 2.9E-09 47.8 3.6 29 1-29 1-29 (229)
361 PF04665 Pox_A32: Poxvirus A32 97.5 0.00012 2.5E-09 48.4 3.3 25 5-29 12-36 (241)
362 PRK14527 adenylate kinase; Pro 97.5 0.00015 3.3E-09 46.0 3.7 27 1-27 1-27 (191)
363 cd00071 GMPK Guanosine monopho 97.5 0.00012 2.5E-09 44.4 3.0 21 9-29 2-22 (137)
364 PRK00300 gmk guanylate kinase; 97.5 0.00016 3.5E-09 46.2 3.7 22 8-29 7-28 (205)
365 TIGR03263 guanyl_kin guanylate 97.5 0.00012 2.6E-09 45.8 3.0 22 8-29 3-24 (180)
366 PRK14532 adenylate kinase; Pro 97.5 0.00013 2.7E-09 46.2 3.1 21 8-28 2-22 (188)
367 PF05729 NACHT: NACHT domain 97.5 0.00011 2.4E-09 44.9 2.8 21 9-29 3-23 (166)
368 PF03205 MobB: Molybdopterin g 97.5 0.00011 2.3E-09 44.7 2.6 22 8-29 2-23 (140)
369 COG1117 PstB ABC-type phosphat 97.4 0.00015 3.2E-09 47.3 3.2 21 7-27 34-54 (253)
370 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00013 2.8E-09 45.8 3.0 20 8-27 5-24 (188)
371 TIGR00101 ureG urease accessor 97.4 0.00016 3.5E-09 46.5 3.4 23 7-29 2-24 (199)
372 PRK14738 gmk guanylate kinase; 97.4 0.00022 4.8E-09 45.9 4.0 25 5-29 12-36 (206)
373 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00014 3.1E-09 42.3 2.8 21 7-27 16-36 (107)
374 PF13238 AAA_18: AAA domain; P 97.4 0.00013 2.9E-09 42.8 2.7 21 9-29 1-21 (129)
375 PRK14737 gmk guanylate kinase; 97.4 0.00016 3.4E-09 46.1 3.1 23 7-29 5-27 (186)
376 COG3638 ABC-type phosphate/pho 97.4 0.00015 3.2E-09 47.7 2.9 21 8-28 32-52 (258)
377 PRK13949 shikimate kinase; Pro 97.4 0.00018 3.8E-09 45.1 3.2 21 8-28 3-23 (169)
378 PF13401 AAA_22: AAA domain; P 97.4 0.00013 2.9E-09 43.1 2.5 25 6-30 4-28 (131)
379 PF13191 AAA_16: AAA ATPase do 97.4 0.00014 2.9E-09 45.4 2.6 23 6-28 24-46 (185)
380 PRK14531 adenylate kinase; Pro 97.4 0.00019 4.1E-09 45.3 3.3 22 7-28 3-24 (183)
381 cd00009 AAA The AAA+ (ATPases 97.4 0.00017 3.8E-09 42.7 2.9 25 6-30 19-43 (151)
382 cd02023 UMPK Uridine monophosp 97.4 0.00017 3.7E-09 46.0 3.0 20 9-28 2-21 (198)
383 COG3842 PotA ABC-type spermidi 97.4 0.00022 4.7E-09 49.6 3.7 23 9-31 34-56 (352)
384 PRK08233 hypothetical protein; 97.4 0.00019 4E-09 44.9 3.0 22 7-28 4-25 (182)
385 PRK02496 adk adenylate kinase; 97.4 0.00022 4.8E-09 44.9 3.4 22 7-28 2-23 (184)
386 cd01428 ADK Adenylate kinase ( 97.3 0.00018 3.9E-09 45.5 2.7 22 8-29 1-22 (194)
387 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00024 5.2E-09 45.9 3.2 22 8-29 32-53 (218)
388 cd03238 ABC_UvrA The excision 97.3 0.00025 5.4E-09 44.8 3.1 21 7-27 22-42 (176)
389 TIGR01351 adk adenylate kinase 97.3 0.00019 4.2E-09 46.2 2.7 21 8-28 1-21 (210)
390 COG4525 TauB ABC-type taurine 97.3 0.00022 4.7E-09 46.1 2.8 21 8-28 33-53 (259)
391 PRK13695 putative NTPase; Prov 97.3 0.00025 5.4E-09 44.4 3.1 22 7-28 1-22 (174)
392 PLN02674 adenylate kinase 97.3 0.00028 6E-09 46.8 3.5 25 4-28 29-53 (244)
393 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00024 5.1E-09 44.6 3.0 20 9-28 2-21 (183)
394 COG1120 FepC ABC-type cobalami 97.3 0.00023 4.9E-09 47.5 3.0 20 9-28 31-50 (258)
395 PF13173 AAA_14: AAA domain 97.3 0.00022 4.9E-09 42.4 2.7 24 8-31 4-27 (128)
396 PF02367 UPF0079: Uncharacteri 97.3 0.00072 1.6E-08 40.3 4.6 23 7-29 16-38 (123)
397 TIGR00960 3a0501s02 Type II (G 97.3 0.00029 6.3E-09 45.4 3.2 22 8-29 31-52 (216)
398 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0003 6.5E-09 44.4 3.2 23 8-30 27-49 (177)
399 PLN02200 adenylate kinase fami 97.3 0.00041 8.9E-09 45.7 3.9 24 5-28 42-65 (234)
400 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00031 6.6E-09 45.0 3.2 23 8-30 28-50 (205)
401 COG2895 CysN GTPases - Sulfate 97.3 0.00099 2.1E-08 46.4 5.8 87 1-87 1-119 (431)
402 PRK05057 aroK shikimate kinase 97.3 0.00036 7.7E-09 43.8 3.4 22 7-28 5-26 (172)
403 smart00053 DYNc Dynamin, GTPas 97.3 0.00037 8E-09 46.1 3.6 24 7-30 27-50 (240)
404 TIGR02315 ABC_phnC phosphonate 97.3 0.00032 6.8E-09 46.1 3.2 22 8-29 30-51 (243)
405 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00033 7.1E-09 45.0 3.3 22 8-29 29-50 (211)
406 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00029 6.2E-09 42.6 2.8 23 7-29 23-45 (133)
407 cd03292 ABC_FtsE_transporter F 97.3 0.00034 7.3E-09 45.0 3.3 22 8-29 29-50 (214)
408 TIGR03608 L_ocin_972_ABC putat 97.2 0.00034 7.5E-09 44.7 3.3 23 8-30 26-48 (206)
409 PRK00279 adk adenylate kinase; 97.2 0.00032 7E-09 45.4 3.2 22 7-28 1-22 (215)
410 KOG1532 GTPase XAB1, interacts 97.2 0.0002 4.4E-09 48.2 2.2 26 4-29 17-42 (366)
411 PRK09270 nucleoside triphospha 97.2 0.00044 9.5E-09 45.2 3.7 25 4-28 31-55 (229)
412 TIGR01313 therm_gnt_kin carboh 97.2 0.00025 5.3E-09 43.8 2.5 21 9-29 1-21 (163)
413 cd01130 VirB11-like_ATPase Typ 97.2 0.00036 7.8E-09 44.2 3.2 24 6-29 25-48 (186)
414 cd02025 PanK Pantothenate kina 97.2 0.00029 6.2E-09 46.0 2.8 20 9-28 2-21 (220)
415 cd03264 ABC_drug_resistance_li 97.2 0.00032 6.9E-09 45.1 3.0 22 8-29 27-48 (211)
416 cd03261 ABC_Org_Solvent_Resist 97.2 0.00035 7.6E-09 45.7 3.2 22 8-29 28-49 (235)
417 TIGR01166 cbiO cobalt transpor 97.2 0.00037 8E-09 44.1 3.2 22 8-29 20-41 (190)
418 cd03224 ABC_TM1139_LivF_branch 97.2 0.00035 7.6E-09 45.2 3.2 22 8-29 28-49 (222)
419 cd01131 PilT Pilus retraction 97.2 0.00033 7.1E-09 44.9 3.0 22 8-29 3-24 (198)
420 PRK00131 aroK shikimate kinase 97.2 0.00048 1E-08 42.6 3.7 22 7-28 5-26 (175)
421 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00038 8.1E-09 44.8 3.3 23 8-30 28-50 (213)
422 cd03269 ABC_putative_ATPase Th 97.2 0.00038 8.2E-09 44.7 3.3 23 8-30 28-50 (210)
423 KOG1144 Translation initiation 97.2 0.0012 2.7E-08 49.8 6.2 83 7-89 476-575 (1064)
424 TIGR02673 FtsE cell division A 97.2 0.00038 8.2E-09 44.8 3.3 22 8-29 30-51 (214)
425 cd03259 ABC_Carb_Solutes_like 97.2 0.00039 8.4E-09 44.8 3.3 22 8-29 28-49 (213)
426 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00039 8.5E-09 45.0 3.3 22 8-29 32-53 (220)
427 cd03265 ABC_DrrA DrrA is the A 97.2 0.0004 8.7E-09 45.0 3.3 22 8-29 28-49 (220)
428 COG0194 Gmk Guanylate kinase [ 97.2 0.00036 7.8E-09 44.3 2.9 24 7-30 5-28 (191)
429 PF03029 ATP_bind_1: Conserved 97.2 0.0002 4.3E-09 47.3 1.9 40 55-94 92-142 (238)
430 PRK11629 lolD lipoprotein tran 97.2 0.00039 8.6E-09 45.4 3.3 23 8-30 37-59 (233)
431 PHA00729 NTP-binding motif con 97.2 0.00044 9.4E-09 45.3 3.4 24 6-29 17-40 (226)
432 TIGR02211 LolD_lipo_ex lipopro 97.2 0.0004 8.7E-09 44.9 3.3 23 8-30 33-55 (221)
433 cd03218 ABC_YhbG The ABC trans 97.2 0.0004 8.6E-09 45.3 3.2 23 8-30 28-50 (232)
434 PRK00625 shikimate kinase; Pro 97.2 0.00039 8.4E-09 43.8 3.0 21 8-28 2-22 (173)
435 PRK14528 adenylate kinase; Pro 97.2 0.00043 9.2E-09 43.9 3.2 20 8-27 3-22 (186)
436 cd03219 ABC_Mj1267_LivG_branch 97.2 0.00038 8.2E-09 45.5 3.1 22 8-29 28-49 (236)
437 cd03260 ABC_PstB_phosphate_tra 97.2 0.00042 9E-09 45.1 3.3 23 8-30 28-50 (227)
438 cd03257 ABC_NikE_OppD_transpor 97.2 0.00041 9E-09 45.0 3.2 23 8-30 33-55 (228)
439 cd03263 ABC_subfamily_A The AB 97.2 0.00039 8.4E-09 45.0 3.0 23 8-30 30-52 (220)
440 PRK11248 tauB taurine transpor 97.2 0.00043 9.2E-09 46.0 3.3 23 8-30 29-51 (255)
441 cd03301 ABC_MalK_N The N-termi 97.2 0.00045 9.6E-09 44.5 3.3 23 8-30 28-50 (213)
442 PRK14529 adenylate kinase; Pro 97.2 0.00042 9E-09 45.4 3.1 22 7-28 1-22 (223)
443 PRK13540 cytochrome c biogenes 97.2 0.00064 1.4E-08 43.4 4.0 23 8-30 29-51 (200)
444 PRK13541 cytochrome c biogenes 97.2 0.00045 9.9E-09 44.0 3.3 23 8-30 28-50 (195)
445 COG0536 Obg Predicted GTPase [ 97.2 0.00085 1.8E-08 46.3 4.7 83 8-91 161-251 (369)
446 cd03266 ABC_NatA_sodium_export 97.2 0.00044 9.6E-09 44.6 3.2 22 8-29 33-54 (218)
447 PF13479 AAA_24: AAA domain 97.2 0.00039 8.4E-09 45.1 2.9 22 5-26 2-23 (213)
448 cd03229 ABC_Class3 This class 97.2 0.00049 1.1E-08 43.2 3.3 22 8-29 28-49 (178)
449 cd03258 ABC_MetN_methionine_tr 97.2 0.00046 9.9E-09 45.0 3.3 23 8-30 33-55 (233)
450 cd03256 ABC_PhnC_transporter A 97.2 0.00045 9.8E-09 45.2 3.2 23 8-30 29-51 (241)
451 PRK14526 adenylate kinase; Pro 97.2 0.00045 9.8E-09 44.8 3.2 21 8-28 2-22 (211)
452 cd03214 ABC_Iron-Siderophores_ 97.2 0.00049 1.1E-08 43.3 3.3 22 8-29 27-48 (180)
453 PRK06547 hypothetical protein; 97.2 0.00057 1.2E-08 43.0 3.5 26 4-29 13-38 (172)
454 cd03216 ABC_Carb_Monos_I This 97.2 0.00074 1.6E-08 41.9 4.0 23 8-30 28-50 (163)
455 TIGR03015 pepcterm_ATPase puta 97.2 0.0004 8.8E-09 46.1 3.0 22 8-29 45-66 (269)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.00044 9.5E-09 42.1 2.9 23 8-30 28-50 (144)
457 cd03235 ABC_Metallic_Cations A 97.2 0.00045 9.7E-09 44.5 3.1 22 8-29 27-48 (213)
458 TIGR03410 urea_trans_UrtE urea 97.2 0.00047 1E-08 44.9 3.2 23 8-30 28-50 (230)
459 TIGR02323 CP_lyasePhnK phospho 97.1 0.00048 1E-08 45.5 3.2 23 8-30 31-53 (253)
460 PRK10908 cell division protein 97.1 0.00051 1.1E-08 44.5 3.3 22 8-29 30-51 (222)
461 cd03268 ABC_BcrA_bacitracin_re 97.1 0.00051 1.1E-08 44.1 3.3 23 8-30 28-50 (208)
462 PRK15177 Vi polysaccharide exp 97.1 0.00069 1.5E-08 43.9 3.9 23 8-30 15-37 (213)
463 cd03247 ABCC_cytochrome_bd The 97.1 0.00053 1.1E-08 43.0 3.3 23 8-30 30-52 (178)
464 cd02021 GntK Gluconate kinase 97.1 0.00047 1E-08 41.9 2.9 21 9-29 2-22 (150)
465 TIGR01189 ccmA heme ABC export 97.1 0.00053 1.1E-08 43.7 3.3 23 8-30 28-50 (198)
466 PRK08099 bifunctional DNA-bind 97.1 0.00046 1E-08 48.8 3.2 24 6-29 219-242 (399)
467 cd03223 ABCD_peroxisomal_ALDP 97.1 0.00055 1.2E-08 42.6 3.2 23 8-30 29-51 (166)
468 TIGR01978 sufC FeS assembly AT 97.1 0.0005 1.1E-08 45.1 3.2 22 8-29 28-49 (243)
469 cd03296 ABC_CysA_sulfate_impor 97.1 0.00051 1.1E-08 45.0 3.2 22 8-29 30-51 (239)
470 PRK11247 ssuB aliphatic sulfon 97.1 0.00052 1.1E-08 45.7 3.3 23 8-30 40-62 (257)
471 TIGR02770 nickel_nikD nickel i 97.1 0.0005 1.1E-08 44.9 3.2 23 8-30 14-36 (230)
472 PF00625 Guanylate_kin: Guanyl 97.1 0.00049 1.1E-08 43.4 3.0 21 9-29 5-25 (183)
473 PRK10895 lipopolysaccharide AB 97.1 0.00053 1.1E-08 45.0 3.3 23 8-30 31-53 (241)
474 smart00072 GuKc Guanylate kina 97.1 0.00052 1.1E-08 43.4 3.1 23 8-30 4-26 (184)
475 PRK13539 cytochrome c biogenes 97.1 0.00056 1.2E-08 44.0 3.3 23 8-30 30-52 (207)
476 TIGR00073 hypB hydrogenase acc 97.1 0.00048 1E-08 44.3 3.0 24 6-29 22-45 (207)
477 cd03215 ABC_Carb_Monos_II This 97.1 0.00055 1.2E-08 43.1 3.2 23 8-30 28-50 (182)
478 PF01637 Arch_ATPase: Archaeal 97.1 0.0004 8.6E-09 44.7 2.6 25 6-30 20-44 (234)
479 PRK14242 phosphate transporter 97.1 0.00054 1.2E-08 45.3 3.3 22 8-29 34-55 (253)
480 PRK10646 ADP-binding protein; 97.1 0.0029 6.3E-08 39.1 6.2 22 8-29 30-51 (153)
481 TIGR03864 PQQ_ABC_ATP ABC tran 97.1 0.00057 1.2E-08 44.8 3.3 23 8-30 29-51 (236)
482 PRK11124 artP arginine transpo 97.1 0.00056 1.2E-08 44.9 3.3 23 8-30 30-52 (242)
483 cd03230 ABC_DR_subfamily_A Thi 97.1 0.0006 1.3E-08 42.6 3.3 22 8-29 28-49 (173)
484 PRK13538 cytochrome c biogenes 97.1 0.00058 1.3E-08 43.8 3.2 23 8-30 29-51 (204)
485 PRK13543 cytochrome c biogenes 97.1 0.00056 1.2E-08 44.2 3.2 23 8-30 39-61 (214)
486 cd03297 ABC_ModC_molybdenum_tr 97.1 0.00057 1.2E-08 44.1 3.2 24 7-30 24-47 (214)
487 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00053 1.2E-08 47.2 3.2 23 7-29 163-185 (325)
488 cd01672 TMPK Thymidine monopho 97.1 0.00051 1.1E-08 43.3 2.9 20 9-28 3-22 (200)
489 KOG0467 Translation elongation 97.1 0.0016 3.4E-08 49.2 5.7 103 3-105 6-126 (887)
490 KOG3347 Predicted nucleotide k 97.1 0.00041 8.9E-09 42.8 2.3 25 4-28 5-29 (176)
491 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.00059 1.3E-08 45.2 3.2 23 8-30 27-49 (246)
492 PRK08356 hypothetical protein; 97.1 0.00094 2E-08 42.6 4.1 25 7-31 6-30 (195)
493 cd03253 ABCC_ATM1_transporter 97.1 0.00059 1.3E-08 44.6 3.2 23 8-30 29-51 (236)
494 cd03232 ABC_PDR_domain2 The pl 97.1 0.00061 1.3E-08 43.3 3.2 22 8-29 35-56 (192)
495 PRK06762 hypothetical protein; 97.1 0.00056 1.2E-08 42.3 3.0 22 8-29 4-25 (166)
496 PRK11264 putative amino-acid A 97.1 0.0006 1.3E-08 44.9 3.3 22 8-29 31-52 (250)
497 cd03233 ABC_PDR_domain1 The pl 97.1 0.00056 1.2E-08 43.9 3.0 23 8-30 35-57 (202)
498 COG3840 ThiQ ABC-type thiamine 97.1 0.0008 1.7E-08 43.0 3.6 24 8-31 27-50 (231)
499 cd03298 ABC_ThiQ_thiamine_tran 97.1 0.00061 1.3E-08 43.8 3.2 23 8-30 26-48 (211)
500 cd03246 ABCC_Protease_Secretio 97.1 0.00065 1.4E-08 42.5 3.3 23 8-30 30-52 (173)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=180.64 Aligned_cols=105 Identities=33% Similarity=0.641 Sum_probs=99.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+|+||+|||||+|+.||+.+.|.+.+..|.+..+ .+.+.++++.++++|||++||++|+.+...|||+||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 4789999999999999999999999999999999999887 558899999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||+++.+||+++ ..|+.+++.+..
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~ 112 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYAS 112 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhcc
Confidence 99999999999999 999999987654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-33 Score=171.99 Aligned_cols=105 Identities=32% Similarity=0.611 Sum_probs=98.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..++|++|||+.+||||||+.||..+.|.+...||.+..| .+.+.+++..++++||||+||++|.++.+.|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5689999999999999999999999999998889997666 668889999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||+++.+||..+ +.|++++..+.|
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~ 108 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQAS 108 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCC
Confidence 99999999999999 999999988766
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.8e-32 Score=169.84 Aligned_cols=103 Identities=31% Similarity=0.500 Sum_probs=97.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+|+++||+.+|||||||.||+.+.|...|.+|.|..| .+.+.+.+.++.+++|||+||++|+++.+.|+|++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 569999999999999999999999999999999998777 6688899999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
|||++|..||++. ++|+++++...
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~ 124 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRER 124 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhcc
Confidence 9999999999999 99999887653
No 4
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=2.4e-30 Score=163.43 Aligned_cols=107 Identities=35% Similarity=0.632 Sum_probs=98.6
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+...+||+++|++|||||||+.+|..+.|.+.+.||.+..+.+.+.+++..+.+++||++|+++|..+++.+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45789999999999999999999999999999999998888777888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||+++++||+++...|+++++...|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~ 108 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP 108 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999987899988766443
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=161.75 Aligned_cols=109 Identities=28% Similarity=0.535 Sum_probs=103.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (110)
|+..+.+|++++||.|||||+|+.||+...|.+.+..|.+..+ .+.+++++.+++++|||++|++.|++++..||+.|-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6778899999999999999999999999999999999999888 668999999999999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHhchhccccccc-CC
Q 033852 80 VFILAFSLISKASYENVAKKVFNCSWLLI-QT 110 (110)
Q Consensus 80 ~~il~~d~~~~~s~~~~~~~w~~~~~~~~-~~ 110 (110)
++|||||+++++||..+ ..|+.+++.+. ||
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~N 111 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNEN 111 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCC
Confidence 99999999999999999 99999999884 44
No 6
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.3e-30 Score=160.99 Aligned_cols=104 Identities=34% Similarity=0.625 Sum_probs=95.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
++||+++|++|||||||+++|..+.|...+.|+.+..+.+.+.+++..+.+++||++|++.|..+.+.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 57999999999999999999999999999999998888777888999999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccccC
Q 033852 86 SLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
|+++++||+++...|++.++...|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~ 104 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP 104 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC
Confidence 999999999976899988765443
No 7
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=8.9e-30 Score=160.09 Aligned_cols=101 Identities=84% Similarity=1.280 Sum_probs=94.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+|++++|++|||||||+.+|+.+.|..++.||.+..+.+.+.+++..+.++|||++|+++|+.+++.++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999999999999988887777888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhcccccc
Q 033852 87 LISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+++++||+++.+.|++++...
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~ 102 (176)
T cd04133 82 LISRASYENVLKKWVPELRHY 102 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 999999999867899987643
No 8
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=9.5e-30 Score=161.64 Aligned_cols=102 Identities=62% Similarity=1.042 Sum_probs=94.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
..+||+++|+.|||||||+.+|..+.|.+.+.||.+..+...+.+++..+.+++||++|+++|+.+++.+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999999999999888877777889999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||+++++||+++...|++++..
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~ 103 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH 103 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999996689876654
No 9
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1e-29 Score=154.43 Aligned_cols=102 Identities=32% Similarity=0.545 Sum_probs=93.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|++|||||||+.+|..+.|.+....|.+..+ .+.+.+++..+++.|||++||++|+.+.+.||++|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 469999999999999999999999999888655678777 5578899999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||++.+++|.++ +.|++++.-.
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Y 112 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLY 112 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhh
Confidence 9999999999999 9999987543
No 10
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-30 Score=161.70 Aligned_cols=106 Identities=29% Similarity=0.600 Sum_probs=99.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.+|++++||+|||||+|+.||..+.|...+..|.+..+ .+.+.+++..+.+++||++||++|+.+...|+++|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 35789999999999999999999999999999999998887 55888999999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhcccccccC
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
++|||++++.||+++ ..|++.+.++.+
T Consensus 89 ~LvyDitne~Sfeni-~~W~~~I~e~a~ 115 (207)
T KOG0078|consen 89 LLVYDITNEKSFENI-RNWIKNIDEHAS 115 (207)
T ss_pred EEEEEccchHHHHHH-HHHHHHHHhhCC
Confidence 999999999999999 669999988765
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.1e-30 Score=156.82 Aligned_cols=104 Identities=30% Similarity=0.584 Sum_probs=97.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+|.+++||+|||||+|+.+|..+.|..+|..|.+..+ .+.+.+++..++++|||++|+++|+.+...|+++.|++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 467899999999999999999999999999999998777 5588899999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccccC
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
|||+++.+||.++ .+|+++++..-|
T Consensus 87 VYDVTn~ESF~Nv-~rWLeei~~ncd 111 (198)
T KOG0079|consen 87 VYDVTNGESFNNV-KRWLEEIRNNCD 111 (198)
T ss_pred EEECcchhhhHhH-HHHHHHHHhcCc
Confidence 9999999999999 999999987654
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.3e-30 Score=160.36 Aligned_cols=105 Identities=34% Similarity=0.542 Sum_probs=99.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+|++++||+|||||-|+.||..++|..+..+|.+..+ ...+.++++.+..+|||++||++|+.+...||++|.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 3679999999999999999999999999999899998887 458889999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||++++.+|+++ .+|+.+++++..
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad 117 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHAD 117 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCC
Confidence 99999999999999 999999999873
No 13
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1e-28 Score=155.01 Aligned_cols=102 Identities=60% Similarity=1.020 Sum_probs=93.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
.+||+++|++|||||||+++|..+.|.+.+.|+.+..+...+.+++..+.+++||++|++++..++..+++.+|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999989999998888767778888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|+++++||+++...|++.+...
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~ 102 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH 102 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999966798877543
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=5e-29 Score=162.38 Aligned_cols=104 Identities=35% Similarity=0.577 Sum_probs=96.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
..+||+++|+.|||||+|+.+|..+.|...+.|+.+..+...+.+++..+.++|||++|+++|..+.+.++++||++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 47899999999999999999999999999999999888877788899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
||+++++||+++...|++++....
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~ 115 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC 115 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC
Confidence 999999999996589999876543
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=156.73 Aligned_cols=100 Identities=34% Similarity=0.612 Sum_probs=93.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+..+||+++||+|||||||+++|.+.+|...+-.|++..+ .+.+.+++..+.++||||+||++|.++.-.+||+||+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 4578999999999999999999999999999999998776 778999999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
++||+++++||+++ +.|-++.
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EF 107 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEF 107 (210)
T ss_pred EEeecCChhhhccH-HHHHHHH
Confidence 99999999999999 9998654
No 16
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=6.2e-29 Score=161.09 Aligned_cols=103 Identities=33% Similarity=0.659 Sum_probs=95.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
++||+|+|++|||||+|+.+|..+.|++.+.||.+..+...+.+++..+.+.|||++|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 47999999999999999999999999999999998888777888999999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
|+++++||+++...|.+++....
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~ 103 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC 103 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999889988765443
No 17
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=4.4e-28 Score=152.03 Aligned_cols=101 Identities=69% Similarity=1.162 Sum_probs=92.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||+.+|..+.|..++.|+.+..+...+..++..+.+++||++|++++..+++.+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999999999999887777677788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhcccccc
Q 033852 87 LISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+++++||+++...|++.+...
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~ 102 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH 102 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999977898766543
No 18
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=3.2e-28 Score=154.51 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=94.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|+.|||||||+++|..+.|...+.++.+..+ ...+.+++..+.+++||++|+++|..+++.+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999999888888877666 346778889999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||+++++||+++ ..|++++..+.|
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~ 109 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAP 109 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCC
Confidence 99999999999999 889999876543
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=2.8e-28 Score=156.15 Aligned_cols=99 Identities=28% Similarity=0.519 Sum_probs=90.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+.|+++|+.|||||||+++|..+.|.+.+.+|.+..+ .+.+.+++..+.+++||++|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999999998889987665 457788888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+++ ..|++.+..
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~ 100 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDK 100 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999 789987654
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-29 Score=148.84 Aligned_cols=104 Identities=30% Similarity=0.531 Sum_probs=96.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|..|||||+|+++|.++-|++....|.+..+ .+.+.+++++++++|||++||++|+++...||+.||++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 4578999999999999999999999999999888888766 678999999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
++||++-..||+-+ ..|+.++....
T Consensus 85 lvydiscqpsfdcl-pewlreie~ya 109 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYA 109 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHh
Confidence 99999999999999 99999886543
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=1.5e-27 Score=150.59 Aligned_cols=100 Identities=25% Similarity=0.564 Sum_probs=91.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+|++++|+.|||||||+++|+.+.|.+.+.||.+..+ .+.+.+++..+.+.+||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999998999997666 457788888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|+++++||+++ ..|++.+...
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~ 101 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGF 101 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 8899877653
No 22
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-28 Score=147.30 Aligned_cols=104 Identities=32% Similarity=0.546 Sum_probs=97.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+|++++|+.|+|||+|+++|+.++|.....-|.+..+ ++.+.+.++.++++|||++||++|++..+.||++|-+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 578999999999999999999999999998888998888 5678889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccccC
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
|||+++++||+.+ ..|+.+++...|
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs 112 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLAS 112 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCC
Confidence 9999999999999 999999987765
No 23
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=153.98 Aligned_cols=107 Identities=66% Similarity=1.067 Sum_probs=101.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++||.++|||+|+..|..+.|++.|.||.-++|...+.++ +..+.+.+||++||++|+.+++..|.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccCC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQT 110 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~~ 110 (110)
+||++++++||++++++|+++++.+-|+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~ 109 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPN 109 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCC
Confidence 9999999999999999999999887764
No 24
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=4.8e-27 Score=148.94 Aligned_cols=100 Identities=48% Similarity=0.774 Sum_probs=91.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|++|||||||+++|..+.|...+.|+.+..+...+..++..+.+++||++|++++..+++.+++.+|++|+|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999998889999888777777788889999999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcccccc
Q 033852 88 ISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~~~ 107 (110)
++++||+++...|++.+...
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~ 101 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH 101 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999966899887654
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=2.2e-27 Score=148.58 Aligned_cols=99 Identities=26% Similarity=0.468 Sum_probs=90.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
.+||+++|++|||||||+++|..+.|...+.|+.+..+...+.+++..+.+++||++|++++..+++.+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999999988899998777777888999999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|+++++||+++ ..|+..+.
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~ 100 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLIT 100 (172)
T ss_pred ECCchhHHHHH-HHHHHHHH
Confidence 99999999999 55765544
No 26
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=1.5e-26 Score=144.61 Aligned_cols=100 Identities=53% Similarity=0.955 Sum_probs=91.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+|++++|++|||||||+.++.++.|..++.|+..+.+...+.+++..+.+++||++|++++..+++.+++.+|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999999998898877776677888888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhccccc
Q 033852 87 LISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++++||+++.+.|++.+..
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~ 100 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRK 100 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999997789977654
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=7.2e-27 Score=148.09 Aligned_cols=101 Identities=34% Similarity=0.551 Sum_probs=93.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||++++..+.+...+.|+.+..+.+.+.+++..+.+++||++|++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 46799999999999999999999999998888899888887778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||+++++||+++ ..|++.+.
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~ 103 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQIL 103 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999 77887654
No 28
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=3.8e-27 Score=150.88 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=88.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEEC-----CeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
+||+++|++|||||||+++|+++.|.+.+.+|.+..+. +.+..+ +..+.++|||++|+++|..+++.+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999988899876553 344442 567999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|+|||+++++||+++ ..|++++..
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~ 105 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALN 105 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHH
Confidence 9999999999999999 899988754
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=7.5e-27 Score=144.07 Aligned_cols=99 Identities=28% Similarity=0.557 Sum_probs=90.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
.+||+++|++|||||||++++..+.|...+.|+.+..+...+.+++..+.+++||++|++++..++..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999999888888887777777888888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|+++++||+++ ..|++.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~ 99 (163)
T cd04136 81 SITSQSSFNDL-QDLREQIL 99 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHH
Confidence 99999999999 77876654
No 30
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1.5e-26 Score=149.84 Aligned_cols=103 Identities=27% Similarity=0.408 Sum_probs=92.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||+++++.+.|...+.++.+..+. ..+..++..+.+.+||++|+++|..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56899999999999999999999999999988999976654 45667778899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||+++++||+++ ..|++++...
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~ 114 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRV 114 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999999 8899877643
No 31
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=2.1e-26 Score=143.71 Aligned_cols=100 Identities=65% Similarity=1.067 Sum_probs=91.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~ 88 (110)
|+++|++|||||||+++|..+.|...+.++....+...+..++..+.+.+||++|++++..+++.+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999988888888777777788888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhchhccccccc
Q 033852 89 SKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 89 ~~~s~~~~~~~w~~~~~~~~ 108 (110)
+++||+++...|++.+....
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~ 100 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC 100 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC
Confidence 99999999778998876543
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=1.4e-26 Score=143.74 Aligned_cols=100 Identities=28% Similarity=0.560 Sum_probs=90.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
.+||+++|++|||||||++++..+.|...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999998888888876664 4677888899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||+++++||+++ ..|++.+..
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~ 102 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARN 102 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999 889876543
No 33
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.9e-26 Score=145.60 Aligned_cols=99 Identities=48% Similarity=0.894 Sum_probs=89.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||+++|.++.+...+.|+.+..+...+... +..+.+.+||++|++++..+++.+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999999888898887776666665 77889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|+++++||+++...|++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~ 100 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVN 100 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHH
Confidence 99999999999778987664
No 34
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.94 E-value=1.6e-26 Score=142.87 Aligned_cols=99 Identities=30% Similarity=0.548 Sum_probs=89.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
++||+++|++|||||||+++++.+.+.+.+.++.+..+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999988888887666677778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|+++++||+++ ..|+..+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~ 99 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIV 99 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHH
Confidence 99999999999 77776554
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=2.2e-26 Score=142.54 Aligned_cols=100 Identities=33% Similarity=0.580 Sum_probs=90.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++..+.|.+.+.|+.+..+ ...+.+++..+.+++||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999988889987665 456778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|+++++||+++ ..|++.+...
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~ 101 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEY 101 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 7899876544
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=2e-26 Score=147.32 Aligned_cols=98 Identities=32% Similarity=0.486 Sum_probs=88.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+||+++|++|||||||+++|.++.+...+.|+.+..+ ...+..+ +..+.+.+||++|++.+..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888899998665 4456676 7889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||+++++||+++ ..|+.++.
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~ 100 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLD 100 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHH
Confidence 999999999999 88987654
No 37
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=3e-26 Score=141.84 Aligned_cols=99 Identities=27% Similarity=0.549 Sum_probs=90.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
++||+++|++|||||||+++++.+.+.+.+.|+.+..+...+..++..+.+++||++|++++..+++.+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888889888777777888888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|+++++||+++ ..|+..+.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~ 99 (164)
T cd04175 81 SITAQSTFNDL-QDLREQIL 99 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHH
Confidence 99999999999 67776654
No 38
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.94 E-value=3.9e-26 Score=142.71 Aligned_cols=97 Identities=34% Similarity=0.613 Sum_probs=89.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
||+++|++|||||||+++|..+.|.+.+.|+.+..+. ..+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999999999999999999987764 567778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhcccc
Q 033852 87 LISKASYENVAKKVFNCSW 105 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~ 105 (110)
+++++||+.+ ..|++.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~ 99 (170)
T cd04108 82 LTDVASLEHT-RQWLEDAL 99 (170)
T ss_pred CcCHHHHHHH-HHHHHHHH
Confidence 9999999999 78998753
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=1.4e-26 Score=142.86 Aligned_cols=101 Identities=40% Similarity=0.719 Sum_probs=92.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
||+++|+.|||||||+++|.++.|.+.+.++.+ +.+...+..++..+.+++||++|++++..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999984 4456788889999999999999999999888999999999999999
Q ss_pred CCChhHHHHHHhchhcccccccC
Q 033852 87 LISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+++++||+++ ..|++.+....+
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~ 102 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKP 102 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHST
T ss_pred cccccccccc-cccccccccccc
Confidence 9999999999 699998765543
No 40
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=4.3e-26 Score=153.57 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=92.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEEC-------------CeEEEEEEEecCCccccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~d~~g~~~~~ 68 (110)
+...+||+++|+.|||||||+++|+.+.|...+.+|.+..+ .+.+.++ +..+.++|||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34689999999999999999999999999988899998765 3445543 356889999999999999
Q ss_pred cCCcccccCCcEEEEEEECCChhHHHHHHhchhcccccc
Q 033852 69 RLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
.+++.|+++++++|+|||+++++||+++ ..|++++...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~ 135 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAAT 135 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHh
Confidence 9999999999999999999999999999 8999887653
No 41
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.7e-27 Score=145.10 Aligned_cols=103 Identities=27% Similarity=0.477 Sum_probs=93.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEE-CCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
++++++++||+-||||+|+++|..++|.+-.+||.+.++ ...+.+ .+..+++++||++||++|+++++.||++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 689999999999999999999999999999999998665 444544 577899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
++||++|++||+.+ +.|++++..+.
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~ 111 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMAT 111 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhc
Confidence 99999999999999 99999887654
No 42
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=9.3e-26 Score=139.63 Aligned_cols=100 Identities=27% Similarity=0.483 Sum_probs=88.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++..+.|.+.+.++.+..+ ...+..++..+.+++||++|++.|..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999888777775444 445667888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|++++.+|+++ ..|++.+...
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~ 101 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREY 101 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 8998877543
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=5.5e-26 Score=141.27 Aligned_cols=101 Identities=30% Similarity=0.636 Sum_probs=91.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|++|||||||++++.++.|...+.++.+..+ ...+..++..+.+++||++|++++..++..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999999889887665 3467778888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++ ..|++.+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~ 103 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEE 103 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHH
Confidence 9999999999999 679987654
No 44
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=8.9e-26 Score=140.09 Aligned_cols=100 Identities=33% Similarity=0.570 Sum_probs=89.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++.++.|...+.|+.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888887655 345566778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|+++++||+++ ..|++.+...
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~ 102 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTY 102 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 8899887653
No 45
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=2.5e-25 Score=138.83 Aligned_cols=101 Identities=54% Similarity=0.974 Sum_probs=91.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|+|||||+++|..+.|...+.++....+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776677788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhcccccc
Q 033852 87 LISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+++++||+++...|++.+...
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~ 101 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY 101 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999977898876543
No 46
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=6.9e-26 Score=139.29 Aligned_cols=99 Identities=35% Similarity=0.566 Sum_probs=89.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
++||+++|++|||||||+++|.++.+...+.|+.+..+...+.+++..+.+++||++|++++..++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999999888889888777777778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|++++++|+++ ..|+..+.
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~ 99 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIK 99 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHH
Confidence 99999999999 66766543
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=7.4e-26 Score=139.89 Aligned_cols=99 Identities=23% Similarity=0.520 Sum_probs=90.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+++||++|++.+..+++.+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999999899887766 456778888999999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+.+ ..|++++..
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~ 100 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQ 100 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHH
Confidence 99999999999 889887654
No 48
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=1.3e-25 Score=143.44 Aligned_cols=103 Identities=31% Similarity=0.591 Sum_probs=91.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||+++|.++.|...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999999998888888876553 46667788889999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||+++++||+++ ..|++.+...
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~ 107 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQN 107 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999999 7899876554
No 49
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=3.9e-26 Score=144.81 Aligned_cols=97 Identities=40% Similarity=0.621 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|++|||||||+++|+.+.|...+.++.+..+...+..++..+.+++||++|+++|..++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888877766677888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcccc
Q 033852 88 ISKASYENVAKKVFNCSW 105 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~ 105 (110)
++++||+++ ..|++.+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~ 97 (190)
T cd04144 81 TSRSTFERV-ERFREQIQ 97 (190)
T ss_pred CCHHHHHHH-HHHHHHHH
Confidence 999999999 78877654
No 50
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=3.3e-25 Score=138.39 Aligned_cols=101 Identities=53% Similarity=0.877 Sum_probs=91.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+.|++++|++|||||||+++|..+.|.+.+.|+.+..+...+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36899999999999999999999999888889888777666778888899999999999999999988999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+++...|++.+..
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~ 101 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKH 101 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999997789876654
No 51
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=2.7e-25 Score=138.32 Aligned_cols=99 Identities=30% Similarity=0.477 Sum_probs=88.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888876654 35566778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+++ ..|++.+..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~ 100 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVR 100 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999 789988764
No 52
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.93 E-value=2.2e-25 Score=138.72 Aligned_cols=101 Identities=36% Similarity=0.623 Sum_probs=90.7
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
....+||+++|++|||||||+++|..+.+.+.+.++.+..+ ...+..++..+.+++||++|++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888788887655 45677889999999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
++|||+++++||+.+ ..|+.++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~ 103 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEF 103 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHH
Confidence 999999999999999 7888754
No 53
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=3.6e-25 Score=138.19 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
+++.+||+++|++|||||||+++|+.+.|. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 467899999999999999999999999998 888899877664 467778888899999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+++|||+++++||+++ ..|+...
T Consensus 81 ~llv~d~~~~~s~~~~-~~~~~~~ 103 (169)
T cd01892 81 ACLVYDSSDPKSFSYC-AEVYKKY 103 (169)
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHh
Confidence 9999999999999999 7887754
No 54
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.93 E-value=9.4e-26 Score=148.37 Aligned_cols=98 Identities=31% Similarity=0.495 Sum_probs=89.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||+++|+++.|...+.|+.++.+.+.+.+++..+.++|||++|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888898886667777888999999999999999999888888999999999999
Q ss_pred CCChhHHHHHHhchhcccc
Q 033852 87 LISKASYENVAKKVFNCSW 105 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~ 105 (110)
+++++||+++ ..|++.+.
T Consensus 81 v~~~~Sf~~i-~~~~~~I~ 98 (247)
T cd04143 81 LDNRESFEEV-CRLREQIL 98 (247)
T ss_pred CCCHHHHHHH-HHHHHHHH
Confidence 9999999999 77776653
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=2e-25 Score=138.39 Aligned_cols=100 Identities=32% Similarity=0.664 Sum_probs=89.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++++..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999999888888887655 44677788889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||+++++||+++ ..|++.+..
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~ 102 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDR 102 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHH
Confidence 999999999999 779887654
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=2.2e-25 Score=138.31 Aligned_cols=98 Identities=28% Similarity=0.548 Sum_probs=88.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||++++..+.|...+.|+.+..+...+..+...+.+.+||++|++++..++..+++.++++|+|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888898887777667778888999999999999999998889999999999999
Q ss_pred CCChhHHHHHHhchhcccc
Q 033852 87 LISKASYENVAKKVFNCSW 105 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~ 105 (110)
+++++||+++ ..|++.+.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~ 99 (165)
T cd04140 82 VTSKQSLEEL-KPIYELIC 99 (165)
T ss_pred CCCHHHHHHH-HHHHHHHH
Confidence 9999999999 66765443
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=1.9e-25 Score=144.20 Aligned_cols=100 Identities=29% Similarity=0.480 Sum_probs=89.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECC-eEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+|++++|++|||||||+++|.++.|...+.|+.+..+ ...+.+++ ..+.++|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999997554 45666654 578999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
||+++++||+++ ..|++.+...
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~ 102 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKV 102 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHh
Confidence 999999999999 7898877653
No 58
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=1.8e-25 Score=140.16 Aligned_cols=102 Identities=37% Similarity=0.608 Sum_probs=88.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEEC----------CeEEEEEEEecCCccccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVD----------GSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
.+.+||+++|++|||||||++++..+.+.+.+.++.+..+.. .+... +..+.+.+||++|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 357999999999999999999999999999888888765533 33332 4568999999999999999999
Q ss_pred ccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 73 LSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
.+++++|++++|||+++++||+++ ..|++.+..
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~ 114 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQT 114 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999 889987654
No 59
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=3.2e-25 Score=140.27 Aligned_cols=100 Identities=31% Similarity=0.534 Sum_probs=89.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||+++|.++.|...+.++.+..+ ...+.+++..+.+++||++|++++..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999887888887665 456777888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|+++++||+++ ..|++++...
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~ 101 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRY 101 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 6698876643
No 60
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=2.7e-25 Score=143.21 Aligned_cols=101 Identities=30% Similarity=0.512 Sum_probs=88.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEE-CCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+++||+++|++|||||||+++|.++.+...+.++.+..+ .+.+.+ ++..+.+++||++|++.+..++..+++.+|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 368999999999999999999999999888788886554 445555 466789999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++++||+++ ..|++.+..
T Consensus 81 lv~D~~~~~Sf~~l-~~~~~~i~~ 103 (211)
T cd04111 81 LVFDITNRESFEHV-HDWLEEARS 103 (211)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 789987643
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=3.1e-25 Score=136.83 Aligned_cols=99 Identities=34% Similarity=0.598 Sum_probs=88.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEEC--CeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+.+. +..+.+++||++|++++..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999999888888887666 3455555 778899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++ ..|++.+..
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~ 102 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEA 102 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 889877654
No 62
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=7.6e-25 Score=138.92 Aligned_cols=100 Identities=34% Similarity=0.569 Sum_probs=89.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+||+++|++|||||||+++|.++.|.. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999875 5788887766 44677888999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
||+++++||+++ ..|++.+...
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~ 102 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNL 102 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhc
Confidence 999999999999 7899876543
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.93 E-value=4.5e-25 Score=137.57 Aligned_cols=101 Identities=28% Similarity=0.557 Sum_probs=89.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccc-cCCcccccCCcEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFI 82 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i 82 (110)
+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||++|+++++ .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999999888888887655 4467788888999999999999886 57888999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++++||+++ ..|++++..
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~ 103 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQ 103 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHH
Confidence 99999999999999 889976654
No 64
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4.5e-25 Score=136.80 Aligned_cols=101 Identities=31% Similarity=0.536 Sum_probs=89.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999999888778776554 4466778888899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++ ..|+..+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~ 103 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEK 103 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHH
Confidence 9999999999999 889887654
No 65
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=4.9e-25 Score=136.45 Aligned_cols=102 Identities=33% Similarity=0.555 Sum_probs=91.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+|++++|++|||||||++++..+.+...+.|+.+..+ ...+..++..+.+.+||++|++++..+++.+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999999888888887665 4467778888899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||+++++||+++ ..|++.+...
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~ 104 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDH 104 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHh
Confidence 9999999999999 7899877554
No 66
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-25 Score=133.47 Aligned_cols=100 Identities=32% Similarity=0.584 Sum_probs=91.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+|++++|++.||||||+.|++.+.|...+..|.+..+. +.+.-..+.+.+++||+.|+++++.+...|+|+|+++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4679999999999999999999999999999999988774 456566778999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||++|++||..+ +.|.-.+.
T Consensus 100 myDitNeeSf~sv-qdw~tqIk 120 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIK 120 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHhe
Confidence 9999999999999 89986553
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.93 E-value=3.8e-25 Score=136.75 Aligned_cols=97 Identities=33% Similarity=0.616 Sum_probs=88.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||+++++.+.+...+.++....+......++..+.+++||++|++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhccc
Q 033852 87 LISKASYENVAKKVFNCS 104 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~ 104 (110)
++++++|+++ ..|+..+
T Consensus 81 ~~~~~s~~~~-~~~~~~i 97 (164)
T smart00173 81 ITDRQSFEEI-KKFREQI 97 (164)
T ss_pred CCCHHHHHHH-HHHHHHH
Confidence 9999999999 7776554
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=7.2e-25 Score=135.30 Aligned_cols=100 Identities=35% Similarity=0.583 Sum_probs=90.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+|++++|++|||||||+++++.+.+...+.++.+..+.....+++..+.+++||++|++++..++..+++.+|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 35899999999999999999999999888888888777766677888889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||++++++|+++ ..|+..+.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~ 100 (164)
T cd04145 81 FSVTDRGSFEEV-DKFHTQIL 100 (164)
T ss_pred EECCCHHHHHHH-HHHHHHHH
Confidence 999999999999 77876654
No 69
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=7.7e-25 Score=141.54 Aligned_cols=102 Identities=31% Similarity=0.525 Sum_probs=92.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 578999999999999999999999999888888887666 4577788888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||+++++||+++ ..|++.+...
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~ 113 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDH 113 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHh
Confidence 9999999999999 8898776543
No 70
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=6.4e-25 Score=140.50 Aligned_cols=95 Identities=27% Similarity=0.443 Sum_probs=86.4
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 12 lG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+|++|||||||+++|+.+.|.+.+.|+.+..+ ...+.+++..+.+.|||++|+++|..+++.|+++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899997666 44667788899999999999999999999999999999999999999
Q ss_pred hHHHHHHhchhcccccc
Q 033852 91 ASYENVAKKVFNCSWLL 107 (110)
Q Consensus 91 ~s~~~~~~~w~~~~~~~ 107 (110)
+||+++ ..|++++...
T Consensus 81 ~S~~~i-~~w~~~i~~~ 96 (200)
T smart00176 81 VTYKNV-PNWHRDLVRV 96 (200)
T ss_pred HHHHHH-HHHHHHHHHh
Confidence 999999 7899987653
No 71
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=140.20 Aligned_cols=104 Identities=27% Similarity=0.550 Sum_probs=93.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (110)
|.....+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777889999999999999999999999999888888887665 446778888899999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHhchhcccc
Q 033852 80 VFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 80 ~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
++|+|||+++++||+.+ ..|++.+.
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~ 105 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDAR 105 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHH
Confidence 99999999999999999 77887654
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=1.4e-24 Score=134.39 Aligned_cols=94 Identities=26% Similarity=0.347 Sum_probs=80.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|+.|||||||+.+|+.+.|.+.+.|+. ..+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999999987765553 44556778888889999999999975 346788999999999
Q ss_pred CCChhHHHHHHhchhcccccc
Q 033852 87 LISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~ 107 (110)
++|++||+++ ..|++.+...
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~ 94 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSY 94 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHh
Confidence 9999999999 6798877643
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=1.4e-24 Score=133.97 Aligned_cols=98 Identities=31% Similarity=0.568 Sum_probs=87.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+|++++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888778776655 445677888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhcccc
Q 033852 86 SLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~ 105 (110)
|++++++|+++ ..|++.+.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~ 99 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDAR 99 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHH
Confidence 99999999999 78987664
No 74
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=4.9e-24 Score=132.36 Aligned_cols=101 Identities=65% Similarity=1.061 Sum_probs=90.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||++|++++......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999998887888877777777788889999999999999988888888999999999999
Q ss_pred CCChhHHHHHHhchhcccccc
Q 033852 87 LISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+++++||.++...|++.+...
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~ 101 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY 101 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999978898766543
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.92 E-value=1.6e-24 Score=134.90 Aligned_cols=101 Identities=27% Similarity=0.565 Sum_probs=89.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999998888778776655 3456778888899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+.+ ..|++.++.
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~ 104 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQ 104 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 789987654
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=3.5e-24 Score=136.61 Aligned_cols=100 Identities=40% Similarity=0.614 Sum_probs=80.2
Q ss_pred ceEEEEECCCCCcHHHHHH-HHhcC-----CCCCCCCCcee--eeEEEE--------EEECCeEEEEEEEecCCcccccc
Q 033852 6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~-~~~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
.+||+++|+.|||||||+. ++.++ .|...+.||.+ ..+... +.+++..+.+++||++|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 66554 35567788885 334322 25688899999999999975 3
Q ss_pred CCcccccCCcEEEEEEECCChhHHHHHHhchhcccccc
Q 033852 70 LRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+...+++++|++|+|||+++++||+++...|++++...
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~ 117 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF 117 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh
Confidence 56678999999999999999999999966798877543
No 77
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.92 E-value=2.2e-24 Score=134.21 Aligned_cols=100 Identities=30% Similarity=0.535 Sum_probs=91.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
.+|++++|++|||||||+++|..+.+...+.++.+..+.+.+..++..+.+++||++|+++|..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888888777777778888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|++++++|+.+ ..|.+.+..
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~ 100 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLR 100 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999 778876643
No 78
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.2e-25 Score=136.63 Aligned_cols=105 Identities=31% Similarity=0.578 Sum_probs=96.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+||++++|..-||||||+-||+.++|..+...|....| .+.+.+.+....+.|||++||++|..+-+.||++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 3589999999999999999999999999999888886555 667888889999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccccC
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|||++|++||+.+ ..|..+++.-..
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlG 116 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLG 116 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhC
Confidence 99999999999999 999998876443
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.92 E-value=2.5e-24 Score=132.62 Aligned_cols=99 Identities=32% Similarity=0.541 Sum_probs=88.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+++||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999888778776554 556777888889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+.+ ..|++.+..
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~ 100 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRD 100 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999 789887654
No 80
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.3e-24 Score=136.82 Aligned_cols=100 Identities=34% Similarity=0.643 Sum_probs=87.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+||+++|++|||||||++++..+.+.. .+.++.+..+. ..+.+++..+.++|||++|++++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 56777776654 3567788899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
||+++++||+++ ..|++.+...
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~ 102 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEY 102 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHh
Confidence 999999999999 7798877654
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.91 E-value=2.6e-24 Score=133.37 Aligned_cols=98 Identities=28% Similarity=0.489 Sum_probs=84.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc-cccCCcccccCCcEEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~il~~d 86 (110)
||+++|++|||||||+++++.+.+...+.++....+...+.+++..+.+++||++|++. +......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999999988878887666666677888889999999999985 34556778999999999999
Q ss_pred CCChhHHHHHHhchhccccc
Q 033852 87 LISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++++||+++ ..|++.+..
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~ 99 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIRE 99 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHH
Confidence 9999999999 778766554
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=6.6e-24 Score=131.18 Aligned_cols=100 Identities=38% Similarity=0.596 Sum_probs=85.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeeE-EEEEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+||+++|++|||||||++++..+ .+.+++.++.+..+ ...+..+ +..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 68788888886555 3445554 56799999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||+++++||+++ ..|++.+...
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~ 104 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTA 104 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHh
Confidence 99999999999999 8998876543
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=7.9e-24 Score=130.63 Aligned_cols=101 Identities=34% Similarity=0.579 Sum_probs=89.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
++||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999887788887655 45777888899999999999999988888999999999999
Q ss_pred EECCChhHHHHHHhchhcccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
||++++++|+.+ ..|+..+...
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~ 102 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRN 102 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHh
Confidence 999999999999 8888766443
No 84
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=1.7e-23 Score=134.91 Aligned_cols=103 Identities=28% Similarity=0.448 Sum_probs=91.5
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
.+...+|++++|++|||||||+++++.+.+...+.++.+..+.. .+..+++.+.+.+||++|++++..++..+++.+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 45678999999999999999999999999988889999776644 55568888999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhcccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+++|||++++.||.++ ..|+..+.
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~ 108 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIV 108 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHH
Confidence 9999999999999999 78887654
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=134.60 Aligned_cols=99 Identities=30% Similarity=0.544 Sum_probs=86.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|++|||||||+++|.++.+. .+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 5789999999999999999999998874 5577777655 3456678888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||+++++||+++.+.|...+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~ 112 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEV 112 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHH
Confidence 999999999999977786554
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=1.5e-23 Score=129.25 Aligned_cols=99 Identities=33% Similarity=0.608 Sum_probs=87.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999998877778777665 346677888889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|++++++|+.+ ..|++.+..
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~ 100 (164)
T smart00175 81 DITNRESFENL-KNWLKELRE 100 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999 679887543
No 87
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=4.4e-23 Score=130.57 Aligned_cols=103 Identities=48% Similarity=0.761 Sum_probs=90.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+.|++++|+.|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+....+.+++.+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 46999999999999999999999999888788877766666777888899999999999998888888889999999999
Q ss_pred ECCChhHHHHHHhchhccccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
|+++++||+++...|++.+..+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~ 103 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC 103 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999778998876543
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=3.3e-23 Score=127.70 Aligned_cols=99 Identities=34% Similarity=0.634 Sum_probs=86.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+|++++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999987777787776654 35667778899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+++++||+.+ ..|++.+..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~ 100 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELET 100 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHH
Confidence 99999999999 669876544
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=2.5e-23 Score=129.24 Aligned_cols=97 Identities=34% Similarity=0.622 Sum_probs=86.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++.++.+...+.++.+..+ .+.+..++..+.+.+||++|++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777776555 446677888899999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccc
Q 033852 86 SLISKASYENVAKKVFNCS 104 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~ 104 (110)
|++++++|+++ ..|.++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~ 98 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEF 98 (172)
T ss_pred ECCCHHHHHHH-HHHHHHH
Confidence 99999999998 7787653
No 90
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.90 E-value=2.6e-23 Score=134.73 Aligned_cols=92 Identities=33% Similarity=0.548 Sum_probs=77.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||+++|..+.|.. +.++.+..+... ....+.+.|||++|++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999975 477776554321 1246789999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhc
Q 033852 87 LISKASYENVAKKVFN 102 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~ 102 (110)
+++++||+++...|..
T Consensus 77 vt~~~Sf~~l~~~~~~ 92 (220)
T cd04126 77 VSNVQSLEELEDRFLG 92 (220)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999544443
No 91
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=2.5e-23 Score=129.24 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=82.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+|++++|++|||||||+++|..+.|...+.+ ....+......++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 4899999999999999999999999766433 323333444556778899999999999888777788899999999999
Q ss_pred CCChhHHHHHHhchhccccc
Q 033852 87 LISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++++||+.+...|++.++.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~ 99 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRR 99 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999996789876654
No 92
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=5.2e-23 Score=131.51 Aligned_cols=98 Identities=26% Similarity=0.489 Sum_probs=81.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEECCeEEEEEEEecCCccccccC--------CcccccC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~ 77 (110)
+||+++|++|||||||+++|..+.|...+.|+.+.. +...+..++..+.+++||++|.+++... ...+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888888644 3456677888899999999997654322 2345789
Q ss_pred CcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 78 ADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|++|+|||+++++||+++ ..|++.+.
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~ 107 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQIL 107 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999999999 77776553
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=5.7e-23 Score=126.26 Aligned_cols=99 Identities=36% Similarity=0.630 Sum_probs=85.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||+++++.+.+...+.++....+ ...+...+..+.+.+||++|++.+..+++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999998776666664444 445666777889999999999999999999999999999999
Q ss_pred ECCChhHHHHHHhchhccccc
Q 033852 86 SLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|++++++|+.+ ..|++++..
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~ 100 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQ 100 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999 778877654
No 94
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=8.1e-23 Score=126.84 Aligned_cols=105 Identities=29% Similarity=0.538 Sum_probs=90.3
Q ss_pred CCC-ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCC
Q 033852 1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (110)
Q Consensus 1 m~~-~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 78 (110)
|.. ...+|++++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 664 4579999999999999999999998888777777776444 44667788888999999999999988888999999
Q ss_pred cEEEEEEECCChhHHHHHHhchhccccc
Q 033852 79 DVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 79 ~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|++++|||++++++|+++ ..|++++..
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~ 107 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQ 107 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999999 789876643
No 95
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-23 Score=126.14 Aligned_cols=103 Identities=29% Similarity=0.556 Sum_probs=95.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+|.+++||-|||||+|+++|...+|.....-+.+..+ .+.+.+.+++++++|||+.||++|+...+.|+++|-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 3578999999999999999999999999888878888887 557889999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||++.+.++..+ ..|+.+.+..
T Consensus 89 mvyditrrstynhl-sswl~dar~l 112 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNL 112 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhcc
Confidence 99999999999999 9999887764
No 96
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=4.1e-25 Score=131.05 Aligned_cols=97 Identities=32% Similarity=0.613 Sum_probs=87.6
Q ss_pred EEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 10 VTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 10 ~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
+++||+++|||+|+-||..+.|.. ..+++.+..|+. .+..++.++++++||+.||++|++....||+.||+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 379999999999999999998864 567788888854 677899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcccccc
Q 033852 88 ISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~~~ 107 (110)
.|..||+++ +.|+.++.+.
T Consensus 81 ankasfdn~-~~wlsei~ey 99 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEY 99 (192)
T ss_pred ccchhHHHH-HHHHHHHHHH
Confidence 999999999 9999887654
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=2.4e-23 Score=129.41 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=81.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
.|+++|++|||||||+++|.++.+...+.|+.+... ..++...+.+.+||++|+++++.++..+++++|++|+|||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 379999999999999999999988888888886543 23445568899999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcccc
Q 033852 88 ISKASYENVAKKVFNCSW 105 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~ 105 (110)
+++++|.++ ..|+..+.
T Consensus 78 t~~~s~~~~-~~~l~~~~ 94 (164)
T cd04162 78 ADSERLPLA-RQELHQLL 94 (164)
T ss_pred CCHHHHHHH-HHHHHHHH
Confidence 999999999 66666553
No 98
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.89 E-value=2.3e-23 Score=132.87 Aligned_cols=99 Identities=35% Similarity=0.635 Sum_probs=93.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
..+|++++|.+|||||+|+.+|.++.|.+.|.||.++.|++.+.++++.+.+.|+|++|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccc
Q 033852 85 FSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~ 104 (110)
|+++|+.||+.+ ..+...+
T Consensus 82 ysitd~~SF~~~-~~l~~~I 100 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQI 100 (196)
T ss_pred EECCCHHHHHHH-HHHHHHH
Confidence 999999999999 5555444
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=6.2e-23 Score=130.92 Aligned_cols=97 Identities=27% Similarity=0.457 Sum_probs=85.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|++|||||||+++|+.+.+...+.++........+.+.+..+.+++||++|+..+..++..+++.+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999988877777655555677788889999999999999998888999999999999999
Q ss_pred CChhHHHHHHhchhcccc
Q 033852 88 ISKASYENVAKKVFNCSW 105 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~ 105 (110)
+++++|+.+ ..|+..+.
T Consensus 81 ~~~~s~~~~-~~~~~~i~ 97 (198)
T cd04147 81 DDPESFEEV-ERLREEIL 97 (198)
T ss_pred CCHHHHHHH-HHHHHHHH
Confidence 999999999 77776543
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=3.8e-23 Score=128.95 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=80.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
++.+||+++|++|||||||++++..+.+.. +.|+.+..+. .+.. ..+.+++||++|++++..+++.+++.+|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 467999999999999999999999888754 5677765543 2222 45789999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++.+|+++...|.+.+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~ 103 (168)
T cd04149 83 VVDSADRDRIDEARQELHRII 103 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHh
Confidence 999999999999955444443
No 101
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=1.8e-22 Score=130.95 Aligned_cols=97 Identities=23% Similarity=0.336 Sum_probs=81.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcee-eeEEEEEEECCeEEEEEEEecCCccccccCCccccc-CCcEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 83 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~il 83 (110)
+||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++....+.+||++|++ ..+...+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999999886 66677765 4456677788888999999999998 233445566 8999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++ ..|++.+..
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~ 100 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRR 100 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 778876644
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=6.2e-23 Score=128.71 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=79.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||++++..+.+. .+.||.+..+.. +.. ..+.+.+||++|++++..++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~-~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET-VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE-EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34799999999999999999999988875 457887765532 223 35789999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhc
Q 033852 84 AFSLISKASYENVAKKVFN 102 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~ 102 (110)
|||++++++|+++.+.|..
T Consensus 87 v~D~t~~~s~~~~~~~l~~ 105 (175)
T smart00177 87 VVDSNDRDRIDEAREELHR 105 (175)
T ss_pred EEECCCHHHHHHHHHHHHH
Confidence 9999999999999544443
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=7.4e-23 Score=126.56 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=77.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||++++..+.+. .+.|+.+..+. .+.. ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999988886 46787765543 2333 45789999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhcc
Q 033852 87 LISKASYENVAKKVFNC 103 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~ 103 (110)
++++.+|+++.+.|.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~ 93 (159)
T cd04150 77 SNDRERIGEAREELQRM 93 (159)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999994444433
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=6.1e-23 Score=129.56 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=80.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+..+||+++|++|||||||++++..+.+.. +.||.+..+. .+.. ..+.+++||++|+++++.++..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999999888865 5777776553 2333 45789999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcc
Q 033852 84 AFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~ 103 (110)
|||++++++|+++.+.|.+.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~ 110 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERM 110 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHH
Confidence 99999999999995444433
No 105
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.3e-25 Score=134.27 Aligned_cols=102 Identities=38% Similarity=0.597 Sum_probs=90.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEE---------CCeEEEEEEEecCCccccccCCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV---------DGSTVNLGLWDTAGQEDYNRLRPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~i~d~~g~~~~~~~~~~~ 74 (110)
+.+|.+.+||+|||||+|++++..+.|..+.+.|.+..++. .+.. .+..+.+++||++||++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 56799999999999999999999999999999999887754 3322 2356899999999999999999999
Q ss_pred ccCCcEEEEEEECCChhHHHHHHhchhcccccc
Q 033852 75 YRGADVFILAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+++|-+++++||+++++||-++ ..|+..++.+
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~h 119 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTH 119 (219)
T ss_pred HHhhccceEEEeccchHHHHHH-HHHHHHHHHh
Confidence 9999999999999999999999 9999877654
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=8.1e-23 Score=128.93 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=78.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|+++||||||++++..+.+. .+.||.+..+. .+. ...+.+++||++|+++++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999988886 45788776543 233 345789999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhch
Q 033852 84 AFSLISKASYENVAKKV 100 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w 100 (110)
|||++++++|.++...|
T Consensus 91 V~D~s~~~s~~~~~~~l 107 (181)
T PLN00223 91 VVDSNDRDRVVEARDEL 107 (181)
T ss_pred EEeCCcHHHHHHHHHHH
Confidence 99999999999984433
No 107
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.88 E-value=2.9e-22 Score=123.43 Aligned_cols=97 Identities=35% Similarity=0.601 Sum_probs=86.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||++|+..+...+..+++.++++++|||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhccc
Q 033852 87 LISKASYENVAKKVFNCS 104 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~ 104 (110)
++++.+|+++ ..|+...
T Consensus 81 ~~~~~s~~~~-~~~~~~~ 97 (164)
T cd04139 81 ITDMESFTAT-AEFREQI 97 (164)
T ss_pred CCCHHHHHHH-HHHHHHH
Confidence 9999999999 5555433
No 108
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=2.3e-22 Score=118.58 Aligned_cols=99 Identities=28% Similarity=0.414 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
||+|+|++|||||||+++|++..+. ..+.+..+..+ ............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 12223333333 23455666666799999999999888888789999999999
Q ss_pred EECCChhHHHHHHhc--hhccccc
Q 033852 85 FSLISKASYENVAKK--VFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~--w~~~~~~ 106 (110)
||+++++||+++.+. |++.++.
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~ 104 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK 104 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc
Confidence 999999999998544 7776653
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=6.3e-22 Score=120.71 Aligned_cols=100 Identities=37% Similarity=0.655 Sum_probs=87.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++....+.+||++|+..+......+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888778877665 446667778889999999999999889999999999999999
Q ss_pred ECCChhHHHHHHhchhcccccc
Q 033852 86 SLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|++++++++.+ ..|+......
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~ 101 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEY 101 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHh
Confidence 99999999999 6698766543
No 110
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=4e-22 Score=128.49 Aligned_cols=104 Identities=34% Similarity=0.554 Sum_probs=90.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|+.|||||||+++|..+.+.+.+.++.+..+.. .....+..+.+.+||++|+++++.+++.|+++++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999988988766644 44445558889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
|||.++..++.++.+.|.+++....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~ 108 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELA 108 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhC
Confidence 9999998887777799998876644
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=4.3e-22 Score=122.12 Aligned_cols=96 Identities=39% Similarity=0.675 Sum_probs=84.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|++|||||||++++..+.+...+.++....+......++..+.+++||++|++.+..+...+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999998888888888766666677777789999999999999988888999999999999999
Q ss_pred CChhHHHHHHhchhccc
Q 033852 88 ISKASYENVAKKVFNCS 104 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~ 104 (110)
++++++.++ ..|...+
T Consensus 81 ~~~~s~~~~-~~~~~~~ 96 (160)
T cd00876 81 TDRESFEEI-KGYREQI 96 (160)
T ss_pred CCHHHHHHH-HHHHHHH
Confidence 999999999 5554433
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=5.7e-22 Score=125.13 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=80.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEE-CCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+||+++|++|||||||++++..+.+... .|+.+.... ..+.. ++..+.+.+||++|++++..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999999888655 677654432 23333 446788999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|||++++++++.+ ..|+..+
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i 101 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKI 101 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHH
Confidence 99999999999888 6666543
No 113
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=9.4e-22 Score=123.39 Aligned_cols=96 Identities=30% Similarity=0.523 Sum_probs=84.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
.||+++|++|||||||++++..+.+...+.|+....+......++..+.+.+||++|++++..++..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999988877888876666667778888899999999999999899999999999999999
Q ss_pred CCChhHHHHHHhchhcc
Q 033852 87 LISKASYENVAKKVFNC 103 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~ 103 (110)
+++.++|+.+ ..|+..
T Consensus 82 ~~~~~~~~~~-~~~~~~ 97 (180)
T cd04137 82 VTSRKSFEVV-KVIYDK 97 (180)
T ss_pred CCCHHHHHHH-HHHHHH
Confidence 9999999999 554433
No 114
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=6.8e-22 Score=123.23 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=77.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
|++++|++|||||||++++.++.+.. +.||.+..+. .+.. ..+.+.+||++|++++...+..+++.+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987754 6777765553 2333 457799999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhccc
Q 033852 88 ISKASYENVAKKVFNCS 104 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~ 104 (110)
+++++|.++ ..|+..+
T Consensus 77 s~~~s~~~~-~~~~~~~ 92 (169)
T cd04158 77 SHRDRVSEA-HSELAKL 92 (169)
T ss_pred CcHHHHHHH-HHHHHHH
Confidence 999999999 5565544
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=6.6e-22 Score=123.18 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=78.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
+|+++|++|||||||++++.+. +...+.|+.+... ..+.. ..+.+++||++|+++++.++..|++.+|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 7777788887643 23434 347799999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcccc
Q 033852 88 ISKASYENVAKKVFNCSW 105 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~~ 105 (110)
+++.+|+++ ..|+..+.
T Consensus 77 s~~~s~~~~-~~~l~~l~ 93 (167)
T cd04161 77 SDDDRVQEV-KEILRELL 93 (167)
T ss_pred CchhHHHHH-HHHHHHHH
Confidence 999999999 67776543
No 116
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=2e-23 Score=129.27 Aligned_cols=100 Identities=37% Similarity=0.571 Sum_probs=91.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.-+|++++|..+|||+|+++|||.+.|...+..+.+..+ ...+.++.+.+.+.+||++|+++|+.+...||++|.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 578999999999999999999999999999998988776 4467778888889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||+-+|+.||+.. ..|++.+.
T Consensus 99 VFSTTDr~SFea~-~~w~~kv~ 119 (246)
T KOG4252|consen 99 VFSTTDRYSFEAT-LEWYNKVQ 119 (246)
T ss_pred EEecccHHHHHHH-HHHHHHHH
Confidence 9999999999999 89987654
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.85 E-value=6.4e-21 Score=119.12 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=78.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+|++++|++|||||||++++....+ ..+.|+.+.... .+..+ .+.+.+||++|++.++.++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIK-TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4678999999999999999999997754 455677664332 33344 4678999999999998888999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++.+|+++ ..|+..+
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~ 107 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKEL 107 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHH
Confidence 9999999999998 5566543
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=3.2e-21 Score=118.76 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=75.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+|+++|++|||||||++++..+.+ ...+.|+.+..... . ....+.+.+||++|++++..++..+++.+|++|+|||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 589999999999999999998763 55667777644322 2 2345779999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhccc
Q 033852 87 LISKASYENVAKKVFNCS 104 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~ 104 (110)
++++.+|..+ ..|+..+
T Consensus 78 ~~~~~~~~~~-~~~~~~~ 94 (162)
T cd04157 78 SSDRLRLVVV-KDELELL 94 (162)
T ss_pred CCcHHHHHHH-HHHHHHH
Confidence 9999999887 5555443
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=7.6e-21 Score=119.05 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=79.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||++++..+.+.. +.|+.+..+. ....+ .+.+.+||++|++.+...+..+++.+|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 457899999999999999999999988865 4677765543 23333 4779999999999999899999999999999
Q ss_pred EEECCChhHHHHHHhchhcc
Q 033852 84 AFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~ 103 (110)
|||++++++|..+.+.|...
T Consensus 89 V~D~s~~~~~~~~~~~l~~~ 108 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKM 108 (174)
T ss_pred EEECCCHHHHHHHHHHHHHH
Confidence 99999999998884444433
No 120
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=116.69 Aligned_cols=103 Identities=22% Similarity=0.530 Sum_probs=95.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
-.+|+-++||+.+|||||+-.+.++++.+++..+.+.++ .+.+.+.+..+.+.|||.+|++++..+.+..+.++.++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 378999999999999999999999999888888888776 5688899999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
+||++.++++..+ ..|+..++...
T Consensus 99 mFDLt~r~TLnSi-~~WY~QAr~~N 122 (205)
T KOG1673|consen 99 MFDLTRRSTLNSI-KEWYRQARGLN 122 (205)
T ss_pred EEecCchHHHHHH-HHHHHHHhccC
Confidence 9999999999999 99999887654
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.83 E-value=3.2e-20 Score=114.27 Aligned_cols=93 Identities=19% Similarity=0.313 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
+|+++|++|||||||+++|..+.+... .|+.+..+. .+.. +..+.+.+||++|++.+...+..+++.+|++++|||.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999988644 566664432 2333 3457899999999999988888899999999999999
Q ss_pred CChhHHHHHHhchhccc
Q 033852 88 ISKASYENVAKKVFNCS 104 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~~ 104 (110)
+++.+|.++ ..|+..+
T Consensus 78 ~~~~~~~~~-~~~~~~~ 93 (160)
T cd04156 78 SDEARLDES-QKELKHI 93 (160)
T ss_pred CcHHHHHHH-HHHHHHH
Confidence 999999998 5555543
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=2.1e-20 Score=115.15 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=74.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|+++||||+|++++..+.+.. +.|+.+..+. .+. ...+.+++||++|++.+..++..+++.++++|+|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998887754 4666655443 222 2457799999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhc
Q 033852 88 ISKASYENVAKKVFN 102 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~ 102 (110)
+++.++....+.|..
T Consensus 77 ~~~~~~~~~~~~~~~ 91 (158)
T cd04151 77 TDRDRLGTAKEELHA 91 (158)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999877555543
No 123
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.82 E-value=4.6e-20 Score=112.50 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=79.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+++++|+++|..|+|||+++++|.+.. .+...|+.+..+.. +. -..+.+++||++||..++++|+.||.++|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l~--~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT-LE--YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE-EE--ecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 468999999999999999999988766 45557888877654 22 345779999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchh
Q 033852 84 AFSLISKASYENVAKKVF 101 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~ 101 (110)
|+|.+|+..|++.....-
T Consensus 90 vvDssD~~r~~e~~~~L~ 107 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELT 107 (185)
T ss_pred EEECchHHHHHHHHHHHH
Confidence 999999999988755443
No 124
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.9e-20 Score=116.10 Aligned_cols=98 Identities=21% Similarity=0.337 Sum_probs=85.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+.+|+++|-.++||||+++++..+++... .||.+.+... +.+. .+.+++||++||++++++|+.|++..+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 56789999999999999999999999998777 9999987654 3333 578999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|.|.+|++.+.++++.....+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l 111 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRML 111 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999976655444
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=7.3e-20 Score=114.94 Aligned_cols=95 Identities=22% Similarity=0.362 Sum_probs=79.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.++.+||+++|.+|+||||+++++..+.+.. ..||.+.... .+..++ +.+.+||++|+..++++|+.|++.+|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc-eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4789999999999999999999999876544 5777776543 344444 56899999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchh
Q 033852 83 LAFSLISKASYENVAKKVF 101 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~ 101 (110)
+|.|.++.+.+.++++...
T Consensus 87 fVvDssd~~~l~e~~~~L~ 105 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELK 105 (175)
T ss_dssp EEEETTGGGGHHHHHHHHH
T ss_pred EEEecccceeecccccchh
Confidence 9999999988888854433
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=1.1e-19 Score=110.85 Aligned_cols=90 Identities=24% Similarity=0.391 Sum_probs=77.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~ 88 (110)
++++|++|||||||++++.+.++...+.|+.+..+.. +... .+.+.+||++|+..+...+..+++.+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7899999999999999999999998888888766543 3333 377999999999999999999999999999999999
Q ss_pred ChhHHHHHHhchhc
Q 033852 89 SKASYENVAKKVFN 102 (110)
Q Consensus 89 ~~~s~~~~~~~w~~ 102 (110)
+++++..+ ..|+.
T Consensus 79 ~~~~~~~~-~~~~~ 91 (159)
T cd04159 79 DRTALEAA-KNELH 91 (159)
T ss_pred CHHHHHHH-HHHHH
Confidence 99999887 44443
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=8.4e-20 Score=112.24 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=74.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
||+++|++|||||||+++++++.+ ..+.++.+..... +... .+.+.+||++|++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET-VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE-EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999884 3445666544322 3333 46799999999999999999999999999999999
Q ss_pred CChhHHHHHHhchhcc
Q 033852 88 ISKASYENVAKKVFNC 103 (110)
Q Consensus 88 ~~~~s~~~~~~~w~~~ 103 (110)
+++++|..+ ..|+..
T Consensus 77 ~~~~~~~~~-~~~~~~ 91 (158)
T cd00878 77 SDRERIEEA-KEELHK 91 (158)
T ss_pred CCHHHHHHH-HHHHHH
Confidence 999999998 555543
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=1.9e-19 Score=113.78 Aligned_cols=94 Identities=15% Similarity=0.279 Sum_probs=76.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.++++++|.+|||||||++++.++.+.. +.|+.+.... .+..+ .+.+.+||++|+..++.++..+++.+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE-ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 567999999999999999999999887643 3555544322 22233 4678999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhc
Q 033852 84 AFSLISKASYENVAKKVFN 102 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~ 102 (110)
|+|++++++|.+. ..|+.
T Consensus 91 vvD~~~~~~~~~~-~~~l~ 108 (184)
T smart00178 91 LVDAYDKERFAES-KRELD 108 (184)
T ss_pred EEECCcHHHHHHH-HHHHH
Confidence 9999999999888 44443
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=3.1e-19 Score=112.85 Aligned_cols=95 Identities=17% Similarity=0.302 Sum_probs=77.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+..|++++|++|||||||++++.++.+. .+.|+.+... ..+..++ +.+.+||++|+..+...+..+++.++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 46889999999999999999999988874 4566665432 2344444 568999999999988888889999999999
Q ss_pred EEECCChhHHHHHHhchhcc
Q 033852 84 AFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~ 103 (110)
|+|+++.++|++. ..|+..
T Consensus 93 V~D~~~~~s~~~~-~~~~~~ 111 (190)
T cd00879 93 LVDAADPERFQES-KEELDS 111 (190)
T ss_pred EEECCcHHHHHHH-HHHHHH
Confidence 9999999999888 445443
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=7.5e-19 Score=108.81 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=71.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
+|+++|++|||||||++++..... ...+.++.+..+. .+..+ ...+.+||++|++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999875422 2334455544442 23333 46789999999999999889999999999
Q ss_pred EEEEECCChhHHHHHHhchhcc
Q 033852 82 ILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~ 103 (110)
++|+|.++++++..+ ..|+..
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~ 98 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEK 98 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHH
Confidence 999999999999988 555543
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=6.9e-18 Score=102.40 Aligned_cols=100 Identities=35% Similarity=0.496 Sum_probs=82.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
.+||+++|.+|+|||||++++..+.+...+.++....+.. .+..++..+.+.+||++|+.++..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999998777777777655543 456677668899999999999988888889999999999
Q ss_pred EECCCh-hHHHHHHhchhcccc
Q 033852 85 FSLISK-ASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~-~s~~~~~~~w~~~~~ 105 (110)
+|+... .++......|...+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~ 102 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEII 102 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHH
Confidence 999988 777777546665443
No 132
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.75 E-value=7.5e-18 Score=108.09 Aligned_cols=94 Identities=13% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCC-cEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAF 85 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~il~~ 85 (110)
+++++|++|||||+|++++..+.+...+.++.. .+.. .....+....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988776544322 2221 111123456799999999999988888889998 9999999
Q ss_pred ECCCh-hHHHHHHhchhc
Q 033852 86 SLISK-ASYENVAKKVFN 102 (110)
Q Consensus 86 d~~~~-~s~~~~~~~w~~ 102 (110)
|.++. +++..+.+.|+.
T Consensus 81 D~~~~~~~~~~~~~~l~~ 98 (203)
T cd04105 81 DSATFQKNLKDVAEFLYD 98 (203)
T ss_pred ECccchhHHHHHHHHHHH
Confidence 99998 788888555554
No 133
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.5e-18 Score=100.79 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=83.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.++++++++|-.++||||++..++.+... ...||.+++... ++ .+.+.+.+||++|+++.+++|.+||.+..++|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvet-Vt--ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET-VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEE-EE--eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46899999999999999999999988854 448999887643 33 355779999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|.|..+++..+++++.....+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~ 112 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIIN 112 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhC
Confidence 9999999999988766655443
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=4.7e-18 Score=106.32 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=69.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-------CCCCCCCce------eeeEEE-EEE--E---CCeEEEEEEEecCCccccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFSA-NVV--V---DGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~-------~~~~~~~~~------~~~~~~-~~~--~---~~~~~~~~i~d~~g~~~~~ 68 (110)
+++++|+.+||||||+++|++.. +...+.++. +..+.. .+. . ++..+.+.+||++|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998732 222222222 222211 122 2 5677889999999999999
Q ss_pred cCCcccccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 69 RLRPLSYRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
..+..+++.+|++|+|||+++..+++.. ..|..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~ 114 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYL 114 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHH
Confidence 9888999999999999999998777666 55543
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=2.4e-17 Score=102.63 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=73.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.++++++|++|||||||++++.+..+.. +.++.+..+. .+..++ ..+.+||++|+..+...+..+++.++++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~-~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK-TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999999876643 4566554332 333443 568999999999888888888999999999
Q ss_pred EEECCChhHHHHHHhc
Q 033852 84 AFSLISKASYENVAKK 99 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~ 99 (110)
|+|+++..+|......
T Consensus 88 v~D~~~~~~~~~~~~~ 103 (173)
T cd04155 88 VIDSADKKRLEEAGAE 103 (173)
T ss_pred EEeCCCHHHHHHHHHH
Confidence 9999999999887333
No 136
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.73 E-value=3.3e-17 Score=98.21 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=81.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
++.+|++++|-.++|||||++.+..... ....||.+++..+ +.. .+++.+++||++|+...+++|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~-v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK-VEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE-Eee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5789999999999999999999877664 4446888876544 322 456889999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|.|.+|+..|+++.+.+.+.+
T Consensus 92 VIDS~D~krfeE~~~el~ELl 112 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELL 112 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHh
Confidence 999999999999866655443
No 137
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.70 E-value=2.6e-18 Score=103.43 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=79.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
.++.+.++|-.++|||||++....+++.+...|+.+++.++ +..+.+.+.+||.+||.+|+.+|..|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46789999999999999999999999999999999988765 345667789999999999999999999999999999
Q ss_pred EECCChhHHHHHH
Q 033852 85 FSLISKASYENVA 97 (110)
Q Consensus 85 ~d~~~~~s~~~~~ 97 (110)
.|..|++.....+
T Consensus 96 VDaad~~k~~~sr 108 (186)
T KOG0075|consen 96 VDAADPDKLEASR 108 (186)
T ss_pred eecCCcccchhhH
Confidence 9999987665443
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.70 E-value=8.3e-17 Score=99.01 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=62.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---CCCCCCCC--ceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.++++|++|||||||++++.+. .+..++.+ +....+. .+...+ ...+.+||++|++++......+++.+|+++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFA-YLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeE-EEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 5899999999999999999863 33333222 2222222 233331 357899999999988766667788999999
Q ss_pred EEEECCC---hhHHHHH
Q 033852 83 LAFSLIS---KASYENV 96 (110)
Q Consensus 83 l~~d~~~---~~s~~~~ 96 (110)
+|+|+++ +++++.+
T Consensus 80 ~V~d~~~~~~~~~~~~~ 96 (164)
T cd04171 80 LVVAADEGIMPQTREHL 96 (164)
T ss_pred EEEECCCCccHhHHHHH
Confidence 9999988 5666655
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.68 E-value=3.7e-17 Score=115.91 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=85.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.++|+++||.||||||||-++...+|+++ .|.....+..+..+....+...|.|++..++-+......++.||++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4689999999999999999999999999888 555544443334444455668899998776666666778899999999
Q ss_pred EEECCChhHHHHHHhchhccccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
+|+++++++.+.+..+|+|.++...
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~ 110 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLF 110 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhccc
Confidence 9999999999999999999998764
No 140
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.7e-16 Score=99.14 Aligned_cols=100 Identities=28% Similarity=0.395 Sum_probs=88.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEE-ECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+|++++|+.|.|||+++.+...++|...+.++.+......+. .+.+.+++..||+.|++.+-.+..-|+-++.+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 37899999999999999999999999999999999877655443 34456999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+||++.+-++.++ .+|.++..
T Consensus 89 mFdVtsr~t~~n~-~rwhrd~~ 109 (216)
T KOG0096|consen 89 MFDVTSRFTYKNV-PRWHRDLV 109 (216)
T ss_pred Eeeeeehhhhhcc-hHHHHHHH
Confidence 9999999999999 88887643
No 141
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=1.6e-16 Score=98.53 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=62.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC--CceeeeEEEEEEECCeEEEEEEEecCCccc----cccCCccccc---CC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSYR---GA 78 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~~---~~ 78 (110)
.|+++|++|||||||++++.+........ .+..... ..+..++ ...+.+||+||..+ ...+...+++ .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~-~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL-GVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc-eEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 58999999999999999998765321111 1111111 1122222 24689999999642 2233444443 59
Q ss_pred cEEEEEEECCCh-hHHHHHHhchhcccc
Q 033852 79 DVFILAFSLISK-ASYENVAKKVFNCSW 105 (110)
Q Consensus 79 ~~~il~~d~~~~-~s~~~~~~~w~~~~~ 105 (110)
|++++|+|++++ ++++++ ..|.+.+.
T Consensus 80 d~vi~v~D~~~~~~~~~~~-~~~~~~l~ 106 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDY-KTIRNELE 106 (170)
T ss_pred CEEEEEEecCCCCCHHHHH-HHHHHHHH
Confidence 999999999999 788888 77876654
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=9.7e-17 Score=102.04 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc--CCCCCCC------------CCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDY------------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~--~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
+|+++|+++||||||+++|+. +.+...+ .++.+..+ .....+......+.+||++|+++|.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 5554432 11222222 22333445567899999999999999999
Q ss_pred ccccCCcEEEEEEECCCh
Q 033852 73 LSYRGADVFILAFSLISK 90 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~ 90 (110)
.+++.+|++++|||+++.
T Consensus 84 ~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG 101 (194)
T ss_pred HHHHhcCEEEEEEECCCC
Confidence 999999999999999873
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=5.5e-16 Score=93.01 Aligned_cols=89 Identities=46% Similarity=0.797 Sum_probs=72.4
Q ss_pred EECCCCCcHHHHHHHHhcCCC-CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 11 vlG~~~~GKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
++|++|+|||||++++..... .....++....+............+.+||++|...+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 4555555533334455556677889999999998887777788899999999999999
Q ss_pred hhHHHHHHhch
Q 033852 90 KASYENVAKKV 100 (110)
Q Consensus 90 ~~s~~~~~~~w 100 (110)
+.++..+ ..|
T Consensus 81 ~~~~~~~-~~~ 90 (157)
T cd00882 81 RESFENV-KEW 90 (157)
T ss_pred HHHHHHH-HHH
Confidence 9999988 544
No 144
>PTZ00099 rab6; Provisional
Probab=99.65 E-value=6.3e-16 Score=97.25 Aligned_cols=77 Identities=32% Similarity=0.525 Sum_probs=68.6
Q ss_pred CCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+.|.+.+.||.+..+ .+.+.+++..+.+.|||++|++++..++..++++||++|+|||+++++||+++ ..|++.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 568888899998666 55678889999999999999999999999999999999999999999999999 789887643
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=1.2e-16 Score=96.72 Aligned_cols=79 Identities=23% Similarity=0.211 Sum_probs=57.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcc-----ccccCCcccccCCcEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 82 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~~i 82 (110)
||+++|++|||||||+++|.++.+. +.++.+..+ . -.+||++|+. .+..+.. .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 333332222 1 1689999972 3343433 478999999
Q ss_pred EEEECCChhHHHHHHhchhc
Q 033852 83 LAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~ 102 (110)
+|||++++.++... .|..
T Consensus 68 lv~d~~~~~s~~~~--~~~~ 85 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFAS 85 (142)
T ss_pred EEecCCCCCcCCCh--hHHH
Confidence 99999999998653 4544
No 146
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.65 E-value=1.2e-15 Score=92.62 Aligned_cols=92 Identities=32% Similarity=0.447 Sum_probs=77.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEE-CCeEEEEEEEecCCcccc-ccCCcccccCCcE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ 80 (110)
+..|++++|..+||||++++++..++.. .++.||.++.|...+.. .+..-.+.++|+.|...+ ..+-..|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4679999999999999999999877644 35678888888776655 345567899999998777 5677788999999
Q ss_pred EEEEEECCChhHHHHH
Q 033852 81 FILAFSLISKASYENV 96 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~ 96 (110)
+++|||..|++||+.+
T Consensus 88 fVLVYs~~d~eSf~rv 103 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV 103 (198)
T ss_pred EEEEecCCCHHHHHHH
Confidence 9999999999999987
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.65 E-value=8.6e-16 Score=94.97 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=66.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
.++++|++|+|||||++++..+.+.....+....... ..+... .....+.+||++|+..+..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999999998876653333322221 222222 13567899999999988888888889999999999
Q ss_pred ECCC---hhHHHHH
Q 033852 86 SLIS---KASYENV 96 (110)
Q Consensus 86 d~~~---~~s~~~~ 96 (110)
|+++ +++++.+
T Consensus 82 d~~~~~~~~~~~~~ 95 (168)
T cd01887 82 AADDGVMPQTIEAI 95 (168)
T ss_pred ECCCCccHHHHHHH
Confidence 9988 4455444
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=2.2e-15 Score=106.30 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=70.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC--------Cccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 74 (110)
..+|++++|++|||||||++++.+... ...+..+..+.+...+..++. .+.+||++|..++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998753 344334444444555666664 4689999998765432 2357
Q ss_pred ccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 75 YRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
++.+|++++|||.+++.+++.. |+...
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~ 306 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDL 306 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHH
Confidence 7899999999999999887764 55444
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=1.4e-15 Score=97.24 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=63.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCC--CCceeeeEEEEEEECCeEEEEEEEecCCcccc---------ccCCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPL 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~ 73 (110)
..++|+++|++|||||||++++.+..+.... .++.... ...+...+. ..+.+||++|..+. .... .
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4579999999999999999999988753321 2222222 222333332 36889999997321 1111 1
Q ss_pred cccCCcEEEEEEECCChhHHHHHHhchhcc
Q 033852 74 SYRGADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
.+..+|++++|+|++++.++..+ ..|.+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~ 145 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQI-ETVEKV 145 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHH-HHHHHH
Confidence 25689999999999999888776 445443
No 150
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=8e-15 Score=90.76 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=59.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEECCeEEEEEEEecCCccccccCCcc---------ccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------SYR 76 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---------~~~ 76 (110)
+|+++|++|||||||++++.++.+.....+ +..... .. .....+.+.+||++|+.+....... ...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV-GH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE-EE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 689999999999999999999876433111 111111 11 1223478999999998532111010 112
Q ss_pred CCcEEEEEEECCChhHH--HHHHhchhccccc
Q 033852 77 GADVFILAFSLISKASY--ENVAKKVFNCSWL 106 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~--~~~~~~w~~~~~~ 106 (110)
.+|++++|+|.+++.++ +.. ..|++.+..
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~ 109 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKP 109 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHh
Confidence 36899999999987654 454 566666543
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.60 E-value=5.1e-15 Score=101.47 Aligned_cols=99 Identities=17% Similarity=0.306 Sum_probs=64.8
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCCCceeeeEEEEEEECCeEEEEEEEecCCccc-cccCCc----
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP---- 72 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~---- 72 (110)
|+..+.++++++|++|||||||+++|.+..+.. ....| .......+..++ .++.+|||||..+ +..+..
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT-r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r 123 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT-RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVR 123 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc-cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHH
Confidence 344567899999999999999999999887642 22222 222233344444 4579999999853 222221
Q ss_pred ---ccccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 73 ---LSYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 73 ---~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
..++.+|++++|+|.++ +|.++...|+..+
T Consensus 124 ~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l 156 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLK--SFDDITHNILDKL 156 (339)
T ss_pred HHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHH
Confidence 23678999999999655 4555534455443
No 152
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-18 Score=106.90 Aligned_cols=101 Identities=28% Similarity=0.427 Sum_probs=88.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEEC-CeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+|++|+|+-|+|||++++++....|...|..+.+..+.- ...-+ ...+++++||+.||++|-.+..-|++.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 46899999999999999999999999999988888776643 33333 34478999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++.-+|+.. ..|.+++-.
T Consensus 104 iVfdvt~s~tfe~~-skwkqdlds 126 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPV-SKWKQDLDS 126 (229)
T ss_pred EEEEccccccccHH-HHHHHhccC
Confidence 99999999999999 999987643
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.59 E-value=8.8e-16 Score=97.92 Aligned_cols=81 Identities=21% Similarity=0.132 Sum_probs=54.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCC-----------ccccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~ 72 (110)
...++|+++|.+|||||||++++.++.+.....|..... ...+... .+.+||++| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 357899999999999999999999888765544433221 1122222 489999999 456666665
Q ss_pred cccc-C---CcEEEEEEECCC
Q 033852 73 LSYR-G---ADVFILAFSLIS 89 (110)
Q Consensus 73 ~~~~-~---~~~~il~~d~~~ 89 (110)
.+++ . ++++++|.|.++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHhhhhhheEEEEEEeCcc
Confidence 6654 3 455566666543
No 154
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.58 E-value=6.5e-15 Score=92.60 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCcc----------ccccC
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE----------DYNRL 70 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~----------~~~~~ 70 (110)
+..+..+++++|++|+|||||++++++..+...+.++.+..... ....++ .+.+||++|.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 45678999999999999999999999887555444444433222 122232 58899999953 23333
Q ss_pred Cccccc---CCcEEEEEEECCChhHHHHH
Q 033852 71 RPLSYR---GADVFILAFSLISKASYENV 96 (110)
Q Consensus 71 ~~~~~~---~~~~~il~~d~~~~~s~~~~ 96 (110)
...+++ .++++++|+|.+++-+..+.
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 334554 36899999999886554443
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=1.6e-14 Score=102.17 Aligned_cols=95 Identities=24% Similarity=0.275 Sum_probs=69.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC--------Cccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 74 (110)
..++++++|.+|+|||||++++.+... ......+..+.....+..++ ..+.+||++|..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998764 23323333333444555555 45789999998765432 2236
Q ss_pred ccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 75 YRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
++.+|++++|||.+++.+++.. ..|..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~ 318 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE 318 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh
Confidence 7899999999999999888866 55654
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.57 E-value=5.1e-15 Score=107.61 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=69.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC-------CCCCCCCc------eeeeEE-EEEEE-----CCeEEEEEEEecCCcccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPT------VFDNFS-ANVVV-----DGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~-------~~~~~~~~------~~~~~~-~~~~~-----~~~~~~~~i~d~~g~~~~ 67 (110)
-+++++|+.++|||||+++++... +...+..+ .+..+. ..+.+ ++..+.+++||++|+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998642 22222221 133332 22222 456789999999999999
Q ss_pred ccCCcccccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
...+..+++.+|++|+|+|+++..+++.. ..|..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~ 117 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYL 117 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHH
Confidence 88888999999999999999997776666 44443
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.56 E-value=2e-14 Score=87.61 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=61.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC--------Cccccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 76 (110)
++++++|++|+|||||++++...... ....++...........+ ...+.+||++|..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 222222222222233333 356899999997655322 223567
Q ss_pred CCcEEEEEEECCChhHHHHH
Q 033852 77 GADVFILAFSLISKASYENV 96 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~~ 96 (110)
.+|++++|+|++++.+....
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~ 99 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL 99 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH
Confidence 89999999999998887777
No 158
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.8e-15 Score=93.38 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=73.9
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC---CCC----CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 73 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 73 (110)
|.+...+.++++|..++|||+|+...... .+. ....+|.+-+.- .+.+. ...+.+||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVC--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeec--cceeEEEEcCChHHHHHHHHH
Confidence 45667899999999999999999886643 221 122344454432 23334 345899999999999999999
Q ss_pred cccCCcEEEEEEECCChhHHHHHHhch
Q 033852 74 SYRGADVFILAFSLISKASYENVAKKV 100 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~s~~~~~~~w 100 (110)
||..+|++|+++|.+|++.|+..+...
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~ 115 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAF 115 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHH
Confidence 999999999999999999988775433
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.55 E-value=1.4e-14 Score=99.63 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=64.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEecCCcc---------ccccCCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 74 (110)
..++|+++|.+|||||||++++.+..+..... .+..+.....+...+. ..+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 34899999999999999999999876532222 2222223334555322 368899999972 122222 24
Q ss_pred ccCCcEEEEEEECCChhHHHHHHhchh
Q 033852 75 YRGADVFILAFSLISKASYENVAKKVF 101 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~~~~w~ 101 (110)
++.||++++|+|++++.+++.+ ..|.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~ 291 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVE 291 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHH
Confidence 7789999999999999888776 4443
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=3.3e-14 Score=101.16 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=64.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccc----------cccCC-
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~- 71 (110)
..+|++++|.++||||||++++++..+. .....+..+.....+..++.. +.+||++|..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988642 222233333344455566655 57999999632 22221
Q ss_pred cccccCCcEEEEEEECCChhHHHHH
Q 033852 72 PLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
..+++.+|++++|||+++..+++.+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~ 312 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ 312 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH
Confidence 2356899999999999999888876
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.53 E-value=6.9e-14 Score=85.55 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=58.1
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeEEEEEEECCeEEEEEEEecCCccccccC------Cccccc--CCcEE
Q 033852 11 TVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR--GADVF 81 (110)
Q Consensus 11 vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~~~~ 81 (110)
++|++|||||||++++.+..+.....+.. .......+..++ ..+.+||+||+..+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999999876444333322 222233444554 46899999999876643 445554 89999
Q ss_pred EEEEECCChhHHH
Q 033852 82 ILAFSLISKASYE 94 (110)
Q Consensus 82 il~~d~~~~~s~~ 94 (110)
++|+|.++.++..
T Consensus 79 i~v~d~~~~~~~~ 91 (158)
T cd01879 79 VNVVDATNLERNL 91 (158)
T ss_pred EEEeeCCcchhHH
Confidence 9999999876543
No 162
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=9.4e-14 Score=85.76 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=59.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC-----------Cc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 72 (110)
.++|+++|++|+|||||++++.+..+.. ....+...........++. .+.+||++|..+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999998875322 1112222222223334444 3689999997543111 11
Q ss_pred ccccCCcEEEEEEECCChhHHHHH
Q 033852 73 LSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
..++.+|++++|+|.+++.+....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL 103 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH
Confidence 245689999999999998776554
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.51 E-value=1.4e-13 Score=100.01 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=68.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+..+|+++|+.++|||||++++....+.....+...... ...+..++. ..+.|||+||++.|..++...++.+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 457899999999999999999998877655433221111 223333332 268999999999999999889999999999
Q ss_pred EEECCC---hhHHHHH
Q 033852 84 AFSLIS---KASYENV 96 (110)
Q Consensus 84 ~~d~~~---~~s~~~~ 96 (110)
|+|.++ +++++.+
T Consensus 165 VVda~dgv~~qT~e~i 180 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI 180 (587)
T ss_pred EEECCCCCCHhHHHHH
Confidence 999987 4555544
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.51 E-value=1.9e-13 Score=96.14 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=64.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCC-----------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 71 (110)
..++++++|.+++|||||++++++.+.. .....+..+.....+..++. .+.+||++|..+.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987632 22233333333334444554 58899999976554332
Q ss_pred cccccCCcEEEEEEECCChhHHHHH
Q 033852 72 PLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
..+++.+|++|+|+|.++..+.+..
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~ 273 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL 273 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH
Confidence 2357889999999999998877665
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.51 E-value=6.3e-14 Score=88.82 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=59.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCc----------cccccCCc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP 72 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~ 72 (110)
.....+++++|++|+|||||+++++++.+...+.++.+......... ....+.+||++|. +++..+..
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 34678999999999999999999998876555555544332221111 1257899999994 23333444
Q ss_pred ccccC---CcEEEEEEECCChhHH
Q 033852 73 LSYRG---ADVFILAFSLISKASY 93 (110)
Q Consensus 73 ~~~~~---~~~~il~~d~~~~~s~ 93 (110)
.+++. ++++++++|.+++.+.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCH
Confidence 45554 3678888898875443
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=5.6e-14 Score=85.73 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=56.9
Q ss_pred EEECCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc--------CCcccccCCc
Q 033852 10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (110)
Q Consensus 10 ~vlG~~~~GKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~ 79 (110)
+++|.+|||||||++++.... +.....++...........++ ..+.+||+||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999775 223333333333333344444 5689999999887544 2334678899
Q ss_pred EEEEEEECCChhHH
Q 033852 80 VFILAFSLISKASY 93 (110)
Q Consensus 80 ~~il~~d~~~~~s~ 93 (110)
++++++|..+..+.
T Consensus 79 ~ii~v~d~~~~~~~ 92 (157)
T cd01894 79 VILFVVDGREGLTP 92 (157)
T ss_pred EEEEEEeccccCCc
Confidence 99999999875443
No 167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.50 E-value=1.9e-14 Score=92.81 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=63.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC-----------CCc------eeeeEE-EEEE--E---CCeEEEEEEEecCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPT------VFDNFS-ANVV--V---DGSTVNLGLWDTAGQ 64 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~-----------~~~------~~~~~~-~~~~--~---~~~~~~~~i~d~~g~ 64 (110)
+++++|+.++|||||+.+++........ ..+ .+..+. .... . ++..+.+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 000 111111 1111 1 355688999999999
Q ss_pred cccccCCcccccCCcEEEEEEECCChhHHHH
Q 033852 65 EDYNRLRPLSYRGADVFILAFSLISKASYEN 95 (110)
Q Consensus 65 ~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~ 95 (110)
.+|......+++.+|++++|+|.++..++..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~ 112 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT 112 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH
Confidence 9998777888999999999999988766543
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.50 E-value=4.5e-14 Score=88.60 Aligned_cols=87 Identities=17% Similarity=0.051 Sum_probs=62.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCce--------------eeeEEE-EEEECCeEEEEEEEecCCccccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
+|+++|++|+|||||++.+.+........... +..... ..........+.+||++|...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887654432211 011110 111222346789999999988888888
Q ss_pred ccccCCcEEEEEEECCChhHHH
Q 033852 73 LSYRGADVFILAFSLISKASYE 94 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~ 94 (110)
.+++.+|++++|+|.++..+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~ 102 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ 102 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH
Confidence 8899999999999998865543
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=4.1e-14 Score=100.72 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=60.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCce-eeeEEEEEEECCeEEEEEEEecCCccc--------cccCCcccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 75 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 75 (110)
..+|+++|.+|||||||++++.+..+.. ...+.. .+.....+..++. .+.+||++|.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4589999999999999999999876422 222222 2222333444444 478999999763 223345578
Q ss_pred cCCcEEEEEEECCChhHH
Q 033852 76 RGADVFILAFSLISKASY 93 (110)
Q Consensus 76 ~~~~~~il~~d~~~~~s~ 93 (110)
+.+|++|+|||+++..++
T Consensus 116 ~~aD~il~VvD~~~~~s~ 133 (472)
T PRK03003 116 RTADAVLFVVDATVGATA 133 (472)
T ss_pred HhCCEEEEEEECCCCCCH
Confidence 899999999999987554
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1.4e-13 Score=96.93 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=63.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc--------cccCCccccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 76 (110)
.+|+++|.+|||||||++++.+... ......+..+.....+..++ ..+.+||++|.+. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 4899999999999999999998763 22322222233333444555 6689999999876 2223345678
Q ss_pred CCcEEEEEEECCChhHH--HHHHhchhcc
Q 033852 77 GADVFILAFSLISKASY--ENVAKKVFNC 103 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~--~~~~~~w~~~ 103 (110)
.+|++|+|+|.++..+. ..+ ..|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~-~~~l~~ 107 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEI-AKILRK 107 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHHHHH
Confidence 99999999999885333 223 455543
No 171
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.48 E-value=2.1e-13 Score=84.74 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=58.8
Q ss_pred EECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCccc----cccCCc---ccccCCcEEE
Q 033852 11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRP---LSYRGADVFI 82 (110)
Q Consensus 11 vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~---~~~~~~~~~i 82 (110)
++|++|||||||++++.+..+. ..+..+........+..++ ...+.+||+||..+ .+.+.. .+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999988652 2222222111112233331 34589999999632 222322 2467899999
Q ss_pred EEEECCCh------hHHHHHHhchhccc
Q 033852 83 LAFSLISK------ASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~------~s~~~~~~~w~~~~ 104 (110)
+|+|.+++ .+++++ ..|...+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 106 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAEL 106 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHH
Confidence 99999998 577776 5555444
No 172
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=1.1e-13 Score=94.64 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=64.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCccc----cccCCcc---cccCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPL---SYRGA 78 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~~~~~ 78 (110)
-.|.++|.++||||||++++......- .+.-|........+... ....+.+||+||..+ ...+... ++..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 368999999999999999998765321 12112211111123332 223588999999743 1223333 45579
Q ss_pred cEEEEEEECCChhHHHHHHhchhccccc
Q 033852 79 DVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 79 ~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++++|+|+++.++++.+ +.|..++..
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~ 264 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEK 264 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHH
Confidence 999999999998888888 888877654
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.45 E-value=4.4e-13 Score=82.04 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc--------CCccccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYR 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 76 (110)
...+|+++|.+|+|||||++++.+..+........................+.+||++|...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998775432211111111111111223346788999999754332 2233477
Q ss_pred CCcEEEEEEECCCh
Q 033852 77 GADVFILAFSLISK 90 (110)
Q Consensus 77 ~~~~~il~~d~~~~ 90 (110)
.+|++++|+|.+++
T Consensus 82 ~~d~i~~v~d~~~~ 95 (168)
T cd04163 82 DVDLVLFVVDASEP 95 (168)
T ss_pred hCCEEEEEEECCCc
Confidence 89999999999987
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.45 E-value=1.9e-13 Score=86.76 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=54.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC----CCCCCC-----CCceeeeEEE-EEE----------ECCeEEEEEEEecCCccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY-----VPTVFDNFSA-NVV----------VDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~----~~~~~~-----~~~~~~~~~~-~~~----------~~~~~~~~~i~d~~g~~~ 66 (110)
++++++|+.++|||||+++|+.. .+...+ -.|....+.. .+. ..+....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 121111 1222222211 111 123357899999999865
Q ss_pred cccCCcccccCCcEEEEEEECCChhH
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
+........+.+|++++|+|.++..+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~ 106 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQ 106 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 43222233456899999999988443
No 175
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.45 E-value=3.3e-13 Score=89.96 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=57.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc-C-------CcccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L-------RPLSYRG 77 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~-------~~~~~~~ 77 (110)
+++++|.+|||||||++++.+.++.. ....|...... .+...+ ..++.+||+||..+... + ...+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999887532 11223332222 222222 24689999999754321 1 2345789
Q ss_pred CcEEEEEEECCChhHHH
Q 033852 78 ADVFILAFSLISKASYE 94 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~ 94 (110)
+|++++|+|.++..+++
T Consensus 80 aDvvl~VvD~~~~~~~~ 96 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG 96 (270)
T ss_pred CCEEEEEEECCCCCchH
Confidence 99999999999877664
No 176
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.4e-14 Score=86.22 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=78.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
++..+++++|-.|+|||+++.++.-++.... .|+.++.... +..+...+++||.+|+...+++|+.||.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~---v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET---VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc---cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4788999999999999999999988886555 7887765432 22356779999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcc
Q 033852 84 AFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~ 103 (110)
|.|.+|++.........+..
T Consensus 92 VVDssd~dris~a~~el~~m 111 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSM 111 (182)
T ss_pred EEeccchhhhhhhHHHHHHH
Confidence 99999988766554444433
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.45 E-value=2.7e-13 Score=100.31 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=69.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee---eeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
+...|+++|..++|||||+.++....+.....+... ..+......++....+.|||+||++.|..++..+++.+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 456899999999999999999998776543322111 11222333344567899999999999999998999999999
Q ss_pred EEEEECCC---hhHHHHH
Q 033852 82 ILAFSLIS---KASYENV 96 (110)
Q Consensus 82 il~~d~~~---~~s~~~~ 96 (110)
|+|+|+++ +++++.+
T Consensus 323 ILVVDA~dGv~~QT~E~I 340 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI 340 (742)
T ss_pred EEEEECcCCCChhhHHHH
Confidence 99999988 4566555
No 178
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.44 E-value=1.4e-13 Score=90.34 Aligned_cols=86 Identities=19% Similarity=0.058 Sum_probs=60.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-CC-------CC-----CC---CceeeeE-EEEEEECCeEEEEEEEecCCccccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT-FP-------TD-----YV---PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~-~~-------~~-----~~---~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
+++++|..|+|||||+++++... .. .. +. ...+..+ .....+.....++.+||+||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 47899999999999999997531 10 00 00 0111112 122333445578999999999998888
Q ss_pred CcccccCCcEEEEEEECCChhHH
Q 033852 71 RPLSYRGADVFILAFSLISKASY 93 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~~s~ 93 (110)
...+++.+|++++|+|.++..+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~ 103 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA 103 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH
Confidence 88899999999999999986543
No 179
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.43 E-value=3.4e-13 Score=98.28 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcC--CCCC-----CCC------CceeeeEE-EEEEE-----CCeEEEEEEEecC
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYV------PTVFDNFS-ANVVV-----DGSTVNLGLWDTA 62 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~-----~~~------~~~~~~~~-~~~~~-----~~~~~~~~i~d~~ 62 (110)
...+.-+++++|+.++|||||+.+++.. .+.. .+. ...+..+. ..+.. ++..+.+++||+|
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 3345558999999999999999999863 2111 110 11122221 11222 4557889999999
Q ss_pred CccccccCCcccccCCcEEEEEEECCChhHHHHHHhchh
Q 033852 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101 (110)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~ 101 (110)
|+.+|...+..+++.+|++|+|+|.++..+.+.. ..|.
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~ 120 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVY 120 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHH
Confidence 9999988888899999999999999987555554 4444
No 180
>PRK10218 GTP-binding protein; Provisional
Probab=99.42 E-value=7.4e-13 Score=96.48 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=66.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc--CCCCCCC------------CCceeeeE-EEEEEECCeEEEEEEEecCCcccccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY------------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
..-+|+++|+.++|||||+.+++. +.+.... ..+.+..+ .+...+....+.+.+||++|+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 345899999999999999999986 4443321 11223333 23444556678899999999999998
Q ss_pred CCcccccCCcEEEEEEECCChh
Q 033852 70 LRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~ 91 (110)
.+..+++.+|++|+|+|.++..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~ 105 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP 105 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc
Confidence 8899999999999999998753
No 181
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.42 E-value=6e-13 Score=98.75 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=64.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc----------cccC-C
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-R 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~ 71 (110)
...||+++|.+|||||||++++.+.+. ...+.++..+.+...+..++.. +.+||++|..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 457999999999999999999998864 3333444444444455566655 56999999642 1111 1
Q ss_pred cccccCCcEEEEEEECCChhHHHHH
Q 033852 72 PLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
..+++.+|++++|+|.++..+++.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~ 551 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL 551 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH
Confidence 2346789999999999998888776
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.42 E-value=1.5e-12 Score=97.02 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=68.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.-.|+++|..++|||||++++..+.+.....+..-... ...+..++ ..+.|||+||++.|..++...++.+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3566899999999999999999988776544322211111 12333443 56899999999999999988999999999
Q ss_pred EEEECCC---hhHHHHH
Q 033852 83 LAFSLIS---KASYENV 96 (110)
Q Consensus 83 l~~d~~~---~~s~~~~ 96 (110)
+|||.++ +++++.+
T Consensus 366 LVVdAddGv~~qT~e~i 382 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI 382 (787)
T ss_pred EEEECCCCCCHhHHHHH
Confidence 9999998 5565554
No 183
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.42 E-value=4.2e-12 Score=85.01 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=45.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCC----------CCCceeee-EEEEEEECCeEEEEEEEecCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVFDN-FSANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~ 64 (110)
-.++|+++|++|+|||||++++++..+... ..++.... +...+..++..+.+.+||++|-
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 468999999999999999999998876543 22333222 2334556778899999999994
No 184
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.42 E-value=7e-13 Score=96.36 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=64.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC----CceeeeEEEEEEEC--------CeE-----EEEEEEecCCccccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV----PTVFDNFSANVVVD--------GST-----VNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~-----~~~~i~d~~g~~~~~~~ 70 (110)
-|+++|+.++|||||++++.+..+..... ++.+..+...-... ... ..+.+||+||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 58999999999999999999887654321 22222221110000 011 23889999999999999
Q ss_pred CcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 71 RPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
+..+++.+|++++|||+++ +++++.+
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i 114 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEAL 114 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHH
Confidence 8889999999999999997 7777776
No 185
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.41 E-value=5.2e-12 Score=82.68 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=58.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCccccc----c---CCcccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----R---LRPLSYRGAD 79 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~---~~~~~~~~~~ 79 (110)
+++++|.+|+|||||++++.+..... .+..+........+..++ ..+++||+||..+.. . ....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999765322 222222111122333444 568999999975432 1 1234678999
Q ss_pred EEEEEEECCChh-HHHHH
Q 033852 80 VFILAFSLISKA-SYENV 96 (110)
Q Consensus 80 ~~il~~d~~~~~-s~~~~ 96 (110)
++++|+|+++++ +.+.+
T Consensus 80 ~il~V~D~t~~~~~~~~~ 97 (233)
T cd01896 80 LILMVLDATKPEGHREIL 97 (233)
T ss_pred EEEEEecCCcchhHHHHH
Confidence 999999998876 44444
No 186
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.40 E-value=7.5e-13 Score=90.50 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=62.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCcccc----ccCCcccc---cCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLSY---RGA 78 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~~~---~~~ 78 (110)
..|+++|.++||||||++++....... .+..|........+..++ ...+.+||+||..+. ..+...++ ..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 478999999999999999998765321 111121111111223332 356899999997532 23334444 469
Q ss_pred cEEEEEEECCCh---hHHHHHHhchhcccc
Q 033852 79 DVFILAFSLISK---ASYENVAKKVFNCSW 105 (110)
Q Consensus 79 ~~~il~~d~~~~---~s~~~~~~~w~~~~~ 105 (110)
+++++|+|+++. ++++++ ..|.+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~ 265 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDY-EIIRNELK 265 (329)
T ss_pred CEEEEEEcCccccccCHHHHH-HHHHHHHH
Confidence 999999999987 677777 66665543
No 187
>PRK11058 GTPase HflX; Provisional
Probab=99.40 E-value=5.5e-13 Score=93.85 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=63.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeEEEEEEECCeEEEEEEEecCCcccc--ccCCc------ccccC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 77 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~~~~~------~~~~~ 77 (110)
.+++++|.+|||||||++++.+..+.....+ +.-+.....+...+. ..+.+||++|..+. ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998764322221 222222233444432 24679999997432 11122 23678
Q ss_pred CcEEEEEEECCChhHHHHHH--hchhccc
Q 033852 78 ADVFILAFSLISKASYENVA--KKVFNCS 104 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~~~~--~~w~~~~ 104 (110)
||++|+|+|++++.+++.+. ..|+..+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 99999999999998887762 2444443
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.40 E-value=1.8e-12 Score=94.36 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=65.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC---CCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+.|+++|..++|||||++++.+. .+.++..+...... ...+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 36899999999999999999853 34333333322222 22344444 67899999999998777777888999999
Q ss_pred EEEECCC---hhHHHHH
Q 033852 83 LAFSLIS---KASYENV 96 (110)
Q Consensus 83 l~~d~~~---~~s~~~~ 96 (110)
+|+|+++ +++++.+
T Consensus 79 LVVDa~~G~~~qT~ehl 95 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL 95 (581)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 9999998 6777666
No 189
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=6.1e-13 Score=88.63 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=59.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC-CCCCC----------------CCCc---eeeeE-EEEEEECCeEEEEEEEecCCccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN-TFPTD----------------YVPT---VFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~-~~~~~----------------~~~~---~~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
+|+++|..|+|||||+++++.. ..... +.+. .+..+ .....+....+.+.+||++|+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6899999999999999998742 11110 0000 01111 22334555668899999999998
Q ss_pred cccCCcccccCCcEEEEEEECCChh
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~ 91 (110)
|.......++.+|++|+|+|.++..
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~ 108 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGV 108 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCc
Confidence 8776667789999999999998753
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=1.2e-12 Score=92.01 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCcc--------ccccCCcccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYRG 77 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 77 (110)
+|+++|.+|||||||++++.+.... ........+.....+..++. .+.+||+||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 22222222223334444444 48999999963 333445567889
Q ss_pred CcEEEEEEECCChhH
Q 033852 78 ADVFILAFSLISKAS 92 (110)
Q Consensus 78 ~~~~il~~d~~~~~s 92 (110)
+|++++|+|..+..+
T Consensus 79 ad~vl~vvD~~~~~~ 93 (429)
T TIGR03594 79 ADVILFVVDGREGLT 93 (429)
T ss_pred CCEEEEEEeCCCCCC
Confidence 999999999987533
No 191
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.38 E-value=1.2e-12 Score=85.44 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=51.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEE-CCeEEEEEEEecCCcccccc-----CCcccccCCcE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNR-----LRPLSYRGADV 80 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~ 80 (110)
||+++|..++||||+.+-+..+-.+.+ ....+.+... ...+ ....+.+++||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999888776644333 2222222211 1112 23345799999999976543 24556789999
Q ss_pred EEEEEECCChh
Q 033852 81 FILAFSLISKA 91 (110)
Q Consensus 81 ~il~~d~~~~~ 91 (110)
+|+|+|+.+.+
T Consensus 80 LIyV~D~qs~~ 90 (232)
T PF04670_consen 80 LIYVFDAQSDD 90 (232)
T ss_dssp EEEEEETT-ST
T ss_pred EEEEEEccccc
Confidence 99999999543
No 192
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=6.6e-13 Score=82.14 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=49.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcccc-----ccCCcccccCCcEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGADVFI 82 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i 82 (110)
+|+++|.+|+|||||++++.+. +... .++.... .... .+||+||.... ..+. ..++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~~-~~~~~v~------~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTLA-RKTQAVE------FNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-CccC-ccceEEE------ECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEEE
Confidence 7999999999999999996643 3211 1222211 1221 26999997322 2222 2367999999
Q ss_pred EEEECCChhHH
Q 033852 83 LAFSLISKASY 93 (110)
Q Consensus 83 l~~d~~~~~s~ 93 (110)
+|+|.++.+++
T Consensus 70 ~v~d~~~~~s~ 80 (158)
T PRK15467 70 YVHGANDPESR 80 (158)
T ss_pred EEEeCCCcccc
Confidence 99999998876
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=7.7e-12 Score=88.20 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC-----------C
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-P-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~ 71 (110)
..++|+++|.+|+|||||++++++... . .....+..+.....+..++. .+.+||++|..+...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 468999999999999999999997652 1 22222333333333444443 4689999996433221 1
Q ss_pred cccccCCcEEEEEEECCChhHHHHH
Q 033852 72 PLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
..+++.+|++|+|+|++++.+.+..
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL 274 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 2356789999999999998776655
No 194
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=2.8e-12 Score=75.52 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=53.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC-CceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~ 85 (110)
+|++++|+.|+|||+|+.++..+.|...+. ++.+ +..+...+++.++++++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998888765433 3323 3444556788899999999
Q ss_pred ECCChhHHHHHHhchhccc
Q 033852 86 SLISKASYENVAKKVFNCS 104 (110)
Q Consensus 86 d~~~~~s~~~~~~~w~~~~ 104 (110)
+.++++|++++ |.+.+
T Consensus 55 ~~~~~~s~~~~---~~~~i 70 (124)
T smart00010 55 RVDDRDSADNK---NVPEV 70 (124)
T ss_pred EccCHHHHHHH---hHHHH
Confidence 99999998765 65543
No 195
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.36 E-value=5.9e-12 Score=91.65 Aligned_cols=92 Identities=23% Similarity=0.240 Sum_probs=64.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCC----CceeeeEEEEEEE---CCeE-----E-----EEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----PTVFDNFSANVVV---DGST-----V-----NLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~-----~-----~~~i~d~~g~~~~ 67 (110)
+.-.|+++|..++|||||++++.+........ ++.+..+...-.. .+.. . .+.+||+||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 34469999999999999999997664432211 1222222110000 0111 1 1689999999999
Q ss_pred ccCCcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 68 NRLRPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
..++...++.+|++++|+|+++ +++++.+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i 116 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI 116 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH
Confidence 9888888899999999999998 7888777
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.34 E-value=6.1e-12 Score=88.64 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCC--CCCC------------------C----C--C---ceeeeEE-EEEEEC
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------Y----V--P---TVFDNFS-ANVVVD 50 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~------------------~----~--~---~~~~~~~-~~~~~~ 50 (110)
|++.+.++++++|..++|||||+.+++... .... + + + ..+.... ....+.
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 788899999999999999999999998421 1100 0 0 0 0111111 112233
Q ss_pred CeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
.....+.+||+||+++|.......++.+|++++|+|.++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 455779999999998875544455788999999999987
No 197
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.34 E-value=4.8e-12 Score=82.32 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=62.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCCCC---------C---ceeeeEE-E--EEEEC--------CeEEEEEEEecC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYV---------P---TVFDNFS-A--NVVVD--------GSTVNLGLWDTA 62 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~--~~~~~~---------~---~~~~~~~-~--~~~~~--------~~~~~~~i~d~~ 62 (110)
+++++|..++|||||+.+++... ...... + ..+.... . ..... +..+.+.+||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999987532 111000 0 0011110 0 11122 347889999999
Q ss_pred CccccccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
|+++|......+++.+|++++|+|+++..+.+..
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~ 115 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE 115 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH
Confidence 9999988888899999999999999987665543
No 198
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.34 E-value=1.3e-11 Score=72.48 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=55.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccc----------ccCCcccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----------NRLRPLSY 75 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~~~~ 75 (110)
+|+++|.+|+|||||++.+.+.... ....++........+..++.. +.++|+||...- ..... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 6899999999999999999975431 111222222222344556655 469999996431 11222 33
Q ss_pred cCCcEEEEEEECCCh--hHHHHH
Q 033852 76 RGADVFILAFSLISK--ASYENV 96 (110)
Q Consensus 76 ~~~~~~il~~d~~~~--~s~~~~ 96 (110)
..+|++++|+|.+++ ++..++
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~ 100 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNI 100 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHH
T ss_pred HHCCEEEEEEECCCCCCHHHHHH
Confidence 789999999998884 345555
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=5.9e-12 Score=78.53 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCC--------CCC---c-eeeeEEEEEEECCeEEEEEEEecCCccccccC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVP---T-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~--------~~~---~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
.....||++.|+.++|||||++.+........ +.. + ...+|-+ +.. .....+.++++|||++|+-+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~-~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IEL-DEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEE-cCcceEEEecCCCcHHHHHH
Confidence 34678999999999999999999887764211 111 1 1222222 112 22245889999999999999
Q ss_pred CcccccCCcEEEEEEECCChhHH
Q 033852 71 RPLSYRGADVFILAFSLISKASY 93 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~~s~ 93 (110)
|..+++++.++|++.|.+++..|
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~ 107 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF 107 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch
Confidence 99999999999999999999998
No 200
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.33 E-value=2.7e-12 Score=82.00 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=48.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-eEEE-EEEE-CCeEEEEEEEecCCccccccCCccc-----ccC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLS-----YRG 77 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~-----~~~ 77 (110)
.+||+++|++|+|||||++.+.+..+......+.+. .... ...+ ......+.+||++|..+.......| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986654332222221 1110 0011 1112358999999975432222222 567
Q ss_pred CcEEEEEE
Q 033852 78 ADVFILAF 85 (110)
Q Consensus 78 ~~~~il~~ 85 (110)
+|+++++.
T Consensus 81 ~d~~l~v~ 88 (197)
T cd04104 81 YDFFIIIS 88 (197)
T ss_pred cCEEEEEe
Confidence 88888873
No 201
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=1.1e-12 Score=96.95 Aligned_cols=98 Identities=19% Similarity=0.118 Sum_probs=67.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCC--C-----------CCCCC---ceeeeE-EEEEEECCeEEEEEEEecCCccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--P-----------TDYVP---TVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~--~-----------~~~~~---~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
....+|+++|..++|||||+++++...- . ..+.+ ..+... .....+......+.+||+||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999975310 0 00000 001111 11122233457899999999999
Q ss_pred cccCCcccccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
|......+++.+|++++|+|.++..+.+.. ..|..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~ 120 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQ 120 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHH
Confidence 888888899999999999999988776655 55543
No 202
>PRK00089 era GTPase Era; Reviewed
Probab=99.32 E-value=7.6e-12 Score=84.14 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=55.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEecCCcccccc--------CCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 74 (110)
+...|+++|.+|||||||++++++..+... ...+....... +... ...++.+||+||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~-i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRG-IVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEE-EEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 556799999999999999999998765322 11122222221 2122 236799999999754321 22235
Q ss_pred ccCCcEEEEEEECCC
Q 033852 75 YRGADVFILAFSLIS 89 (110)
Q Consensus 75 ~~~~~~~il~~d~~~ 89 (110)
+..+|++++|+|+++
T Consensus 82 ~~~~D~il~vvd~~~ 96 (292)
T PRK00089 82 LKDVDLVLFVVDADE 96 (292)
T ss_pred HhcCCEEEEEEeCCC
Confidence 678999999999998
No 203
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=7.1e-12 Score=88.10 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=60.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCCc-eeeeEEEEEEECCeEEEEEEEecCCccc----cccCCcccc---cCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGA 78 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~ 78 (110)
.|+++|.++||||||++++.+....- .+..+ ....+- .+..+. ...+.+||+||..+ ...+...|+ ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 78999999999999999999766321 11111 122111 122221 24589999999643 223334444 469
Q ss_pred cEEEEEEECCCh---hHHHHHHhchhccccc
Q 033852 79 DVFILAFSLISK---ASYENVAKKVFNCSWL 106 (110)
Q Consensus 79 ~~~il~~d~~~~---~s~~~~~~~w~~~~~~ 106 (110)
+++|+|+|+++. +++++. ..|..++..
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~ 267 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKL 267 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhh
Confidence 999999999864 566666 566555443
No 204
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.32 E-value=8.7e-12 Score=75.43 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=58.0
Q ss_pred EECCCCCcHHHHHHHHhcCCCCC-CCC-CceeeeEEEEEEECCeEEEEEEEecCCccccccCCc-------ccccCCcEE
Q 033852 11 TVGDGAVGKTCMLISYTSNTFPT-DYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (110)
Q Consensus 11 vlG~~~~GKtsl~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------~~~~~~~~~ 81 (110)
++|..|+|||||++++.+..... ... ++............ ....+.+||++|...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999998765442 211 22222222222222 145689999999876654333 367899999
Q ss_pred EEEEECCChhHHHHH
Q 033852 82 ILAFSLISKASYENV 96 (110)
Q Consensus 82 il~~d~~~~~s~~~~ 96 (110)
++++|.++..+....
T Consensus 80 l~v~~~~~~~~~~~~ 94 (163)
T cd00880 80 LFVVDADLRADEEEE 94 (163)
T ss_pred EEEEeCCCCCCHHHH
Confidence 999999998777666
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.31 E-value=5e-12 Score=77.55 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=59.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccc----------cccCCccccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED----------YNRLRPLSYR 76 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~~ 76 (110)
+|+++|++|+|||||++.+.++.+.....++.+..... ....+. .+.+||++|... +......|++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999766655555554433222 222222 688999998432 3333334444
Q ss_pred ---CCcEEEEEEECCChh--HHHHHHhchhccc
Q 033852 77 ---GADVFILAFSLISKA--SYENVAKKVFNCS 104 (110)
Q Consensus 77 ---~~~~~il~~d~~~~~--s~~~~~~~w~~~~ 104 (110)
.++++++++|.++.. ....+ ..|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~-~~~l~~~ 109 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEM-LDWLEEL 109 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHH-HHHHHHc
Confidence 357888999998653 22333 4666543
No 206
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.30 E-value=6.9e-12 Score=85.39 Aligned_cols=81 Identities=23% Similarity=0.219 Sum_probs=56.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCC------CCCCceeeeEEEE----------------EEECC-eEEEEEEEecCCc-
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTFPT------DYVPTVFDNFSAN----------------VVVDG-STVNLGLWDTAGQ- 64 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~-~~~~~~i~d~~g~- 64 (110)
+.++|.++||||||++++.+..+.. ...|+.+..+... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999886431 2234444333210 00122 3477999999997
Q ss_pred ---cccccCCccc---ccCCcEEEEEEECCC
Q 033852 65 ---EDYNRLRPLS---YRGADVFILAFSLIS 89 (110)
Q Consensus 65 ---~~~~~~~~~~---~~~~~~~il~~d~~~ 89 (110)
+++..+.+.+ ++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4555555554 889999999999973
No 207
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.30 E-value=4e-12 Score=84.68 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=58.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC------Cce----------eeeE-EEEEEECCeEEEEEEEecCCccccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTV----------FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~------~~~----------~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
+|+++|.+|+|||||+++++......... .+. +... ............+.+||+||..+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 47999999999999999987532110000 000 0111 111222233467899999999888777
Q ss_pred CcccccCCcEEEEEEECCChhHHHH
Q 033852 71 RPLSYRGADVFILAFSLISKASYEN 95 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~~s~~~ 95 (110)
...+++.+|++++|+|.++......
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~ 105 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT 105 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH
Confidence 7788999999999999998655443
No 208
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=9.4e-12 Score=92.47 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=55.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCce-eeeEEEEEEECCeEEEEEEEecCCcccc--------ccCCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~ 74 (110)
...+|+++|.++||||||++++++..... ...|.. .+........++ ..+.+||++|.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34689999999999999999999775421 112222 111122223333 45889999997632 2233446
Q ss_pred ccCCcEEEEEEECCCh
Q 033852 75 YRGADVFILAFSLISK 90 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~ 90 (110)
++.+|++|+|+|.++.
T Consensus 352 ~~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 352 VSLADAVVFVVDGQVG 367 (712)
T ss_pred HHhCCEEEEEEECCCC
Confidence 7899999999999864
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.27 E-value=1.3e-11 Score=87.02 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=61.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhc--CCCCCCC----------------------C-----CceeeeEE-EEEEECCe
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY----------------------V-----PTVFDNFS-ANVVVDGS 52 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~~----------------------~-----~~~~~~~~-~~~~~~~~ 52 (110)
+.+.++++++|..++|||||+.+++. +...... + ...+.... ........
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45789999999999999999999985 3221100 0 00011111 11223444
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHH
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~ 93 (110)
...+.+||++|+++|.......++.+|++++|+|+++.+++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 57899999999988765555567899999999999988543
No 210
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=1.4e-12 Score=82.13 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=61.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcc---cccCCcEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVFI 82 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~~i 82 (110)
.=.++++|++|+|||+|..++..+...+...+. .......+ -....-.+.+.|+||+.+.+..... +...+.++|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 346899999999999999999999765553333 22221111 1223345889999999988764333 477899999
Q ss_pred EEEECCC-hhHHHHHHhchhcc
Q 033852 83 LAFSLIS-KASYENVAKKVFNC 103 (110)
Q Consensus 83 l~~d~~~-~~s~~~~~~~w~~~ 103 (110)
+|.|.+. ..+...+.++.+..
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~i 102 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDI 102 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHH
Confidence 9999974 56677776666544
No 211
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.24 E-value=3.5e-11 Score=77.21 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=35.9
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCCh----hHHHHHHhch
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKV 100 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~----~s~~~~~~~w 100 (110)
..+.|||+||++++.......+..+|++++|+|++++ ++++.+ ..|
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~ 132 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AAL 132 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHH
Confidence 6789999999988866666667789999999999873 455555 444
No 212
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.4e-12 Score=76.83 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=73.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.-|++++|-.++|||||++.+..+.. .++.||.-..-. ...+. ...++..|.+|...-+..|..|+-.+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE-~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE-ELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChH-Hheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 456999999999999999999998875 344666633211 12233 35689999999998899999999999999999
Q ss_pred EECCChhHHHHHHhch
Q 033852 85 FSLISKASYENVAKKV 100 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w 100 (110)
+|+.|.+.|.+.+...
T Consensus 95 vda~d~er~~es~~el 110 (193)
T KOG0077|consen 95 VDAYDQERFAESKKEL 110 (193)
T ss_pred eehhhHHHhHHHHHHH
Confidence 9999999998886543
No 213
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.23 E-value=1.5e-11 Score=88.53 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc--CCCCCC-----------C----C---CceeeeEEE-EEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-----------Y----V---PTVFDNFSA-NVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~-----------~----~---~~~~~~~~~-~~~~~~~~~~~~i~d~~g 63 (110)
+.-+++++|..++|||||+++++. +..... . . ...+..+.. ...+....+.+.+||+||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999973 211000 0 0 001222221 233444567899999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCCh
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+.+|......+++.+|++|+|+|.++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~g 115 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKG 115 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCC
Confidence 999887777788999999999999875
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.22 E-value=1.4e-11 Score=79.32 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=54.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-CCCC-C------------------------CCc---eeeeEE-EEEEECCeEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT-FPTD-Y------------------------VPT---VFDNFS-ANVVVDGSTVNLG 57 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~-~~~~-~------------------------~~~---~~~~~~-~~~~~~~~~~~~~ 57 (110)
+++++|.+++|||||+++++... .... . .+. .+.... ...........+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999986432 1110 0 000 011110 0112223345688
Q ss_pred EEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 58 i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+||+||+++|.......++.+|++|+|+|.++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999988755455667899999999999875
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.22 E-value=2.6e-11 Score=88.46 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc--CCCCCCCC------------CceeeeE-EEEEEECCeEEEEEEEecCCccccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~--~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
+|+++|..++|||||+.+++. +.+..... ...+..+ .+...+....+.+.+||+||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999985 44432211 1112222 22333444567899999999999988888
Q ss_pred ccccCCcEEEEEEECCCh
Q 033852 73 LSYRGADVFILAFSLISK 90 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~ 90 (110)
.+++.+|++++|+|.++.
T Consensus 83 ~~l~~aD~alLVVDa~~G 100 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG 100 (594)
T ss_pred HHHHhCCEEEEEEeCCCC
Confidence 899999999999999863
No 216
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.20 E-value=2e-10 Score=85.91 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=59.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCc----------c
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~----------~ 73 (110)
++++|+++|.+|||||||++++.+...... ...+.+.. +..........+++||+||..++..... .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999987654222 12233222 2222334456789999999877654221 2
Q ss_pred cc--cCCcEEEEEEECCChhHH
Q 033852 74 SY--RGADVFILAFSLISKASY 93 (110)
Q Consensus 74 ~~--~~~~~~il~~d~~~~~s~ 93 (110)
++ ..+|++++|+|.++.++-
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~ 101 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN 101 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh
Confidence 32 379999999999987653
No 217
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=5.1e-11 Score=83.17 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=60.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEecCCcccccc----CC---cccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LR---PLSYRGAD 79 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~---~~~~~~~~ 79 (110)
.|.++|.++||||||++++...+.... +..|......-.+...+ ...+.++|+||..+-.. +. ...+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 789999999999999999987653221 11122111111222322 23488999999753211 11 12467899
Q ss_pred EEEEEEECC---ChhHHHHHHhchhccccc
Q 033852 80 VFILAFSLI---SKASYENVAKKVFNCSWL 106 (110)
Q Consensus 80 ~~il~~d~~---~~~s~~~~~~~w~~~~~~ 106 (110)
++++|+|++ +.+.++.. ..|++++..
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~ 268 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEK 268 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHh
Confidence 999999998 45666666 666655543
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-10 Score=77.42 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=58.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc------------CC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------------LR 71 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------------~~ 71 (110)
.+.+.++++|.|+||||||.+.+++.+.........-...+..-.+.....++.++|+||--.-.. --
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 568899999999999999999999998765533322222222222344557899999999432111 11
Q ss_pred cccccCCcEEEEEEECCC
Q 033852 72 PLSYRGADVFILAFSLIS 89 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~ 89 (110)
...+..||++++++|+++
T Consensus 150 ~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASA 167 (379)
T ss_pred HHHHhhCCEEEEEEeccC
Confidence 123457999999999996
No 219
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.17 E-value=1.9e-11 Score=90.93 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=61.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC---------------CCCCC---CCCceeeeE-EEEEEECCeEEEEEEEecCCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN---------------TFPTD---YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~---------------~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (110)
...+|+++|+.++|||||+.+++.. .+.+. ...|..... ......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4569999999999999999999752 11111 111221111 1122345667889999999999
Q ss_pred ccccCCcccccCCcEEEEEEECCCh
Q 033852 66 DYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+|.......++.+|++|+|+|..+.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCC
Confidence 9877777889999999999999873
No 220
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.15 E-value=3.4e-10 Score=69.90 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=55.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeEEEEEEECCeEEEEEEEecCCcccccc------CCcccc--cC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--RG 77 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~ 77 (110)
++|+++|.++||||||++++.+...... +..+.-......+...+ ..+.+.|+||.-...+ +...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999998874322 22222222233445555 4588999999533322 223333 47
Q ss_pred CcEEEEEEECCChhHHHHH
Q 033852 78 ADVFILAFSLISKASYENV 96 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~~~ 96 (110)
.|+++.|.|.++.+.=.++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l 97 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL 97 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
Confidence 9999999999997654444
No 221
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.15 E-value=2.1e-10 Score=80.19 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=55.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CC-----CCceeeeEEE-EE---------------EEC-CeEEEEEEEecCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DY-----VPTVFDNFSA-NV---------------VVD-GSTVNLGLWDTAG 63 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~-----~~~~~~~~~~-~~---------------~~~-~~~~~~~i~d~~g 63 (110)
++|.++|.++||||||++++.+..+.. .+ .|+.+..+.. .+ ..+ .....+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876643 22 1222222210 00 011 2336799999999
Q ss_pred c----cccccCCccc---ccCCcEEEEEEECC
Q 033852 64 Q----EDYNRLRPLS---YRGADVFILAFSLI 88 (110)
Q Consensus 64 ~----~~~~~~~~~~---~~~~~~~il~~d~~ 88 (110)
. .+...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344455566 78999999999997
No 222
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.14 E-value=1e-10 Score=84.37 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=61.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc-CCCCCCC-------------------CCceeeeE-EEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS-NTFPTDY-------------------VPTVFDNF-SANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~-~~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g 63 (110)
+..+++++|..++|||||+++++. ....... ....+..+ .....++...+.+.+||+||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 466999999999999999999853 2221100 00112222 22344556678899999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCCh
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+.+|.......++.+|++|+|+|.++.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 988877666788999999999999874
No 223
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.14 E-value=2.1e-10 Score=77.56 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=51.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC-------Cccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLS 74 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~ 74 (110)
...++|+++|.+|+||||+++++++..... ...+............+ ...+.++||||..+.... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 367899999999999999999999775321 21121111111122233 356899999997643211 1111
Q ss_pred c--cCCcEEEEEEECC
Q 033852 75 Y--RGADVFILAFSLI 88 (110)
Q Consensus 75 ~--~~~~~~il~~d~~ 88 (110)
+ ...|++++|..++
T Consensus 114 l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLD 129 (313)
T ss_pred hhcCCCCEEEEEeccC
Confidence 2 2689999996554
No 224
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=2.8e-11 Score=80.04 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=59.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCC-C-ceeeeEEEEEEECCeEEEEEEEecCCccc-------cccCCccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P-TVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPLS 74 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~ 74 (110)
...+++++.|..|+|||||++.++.++..+... + ............++ -.+.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 467899999999999999999999876544321 1 11111111122233 3489999998654 56666778
Q ss_pred ccCCcEEEEEEECCChh
Q 033852 75 YRGADVFILAFSLISKA 91 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~ 91 (110)
+..+|.++++.+..|+.
T Consensus 115 l~~~DLvL~l~~~~dra 131 (296)
T COG3596 115 LPKLDLVLWLIKADDRA 131 (296)
T ss_pred hhhccEEEEeccCCCcc
Confidence 88999999999888753
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.14 E-value=1e-10 Score=78.15 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=56.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc--CCCCC--C---------CCC---ceeeeEE-EEEEECCeEEEEEEEecCCccccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTS--NTFPT--D---------YVP---TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~--~~~~~--~---------~~~---~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
+++++|..++|||||+++++. +.... . +.+ ..+.... ....+.....++.++|+||..+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 478999999999999999874 21110 0 000 0111111 11222334567899999999888777
Q ss_pred CcccccCCcEEEEEEECCCh
Q 033852 71 RPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~ 90 (110)
+..+++.+|++++|.|..+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g 100 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHHHHHcCEEEEEEECCCC
Confidence 78889999999999999774
No 226
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=78.94 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=64.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCc--------cc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------LS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------~~ 74 (110)
.-+|++++|.|+||||||++.+.+.+- ......|..+.....+.+++.+ +.+.||+|..+...... ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence 468999999999999999999998753 3333445566666677777755 78999999776554332 34
Q ss_pred ccCCcEEEEEEECCCh
Q 033852 75 YRGADVFILAFSLISK 90 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~ 90 (110)
+.+||.+++|+|.+.+
T Consensus 294 i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 294 IEEADLVLFVLDASQP 309 (454)
T ss_pred HHhCCEEEEEEeCCCC
Confidence 6789999999999995
No 227
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.12 E-value=8.9e-11 Score=74.36 Aligned_cols=87 Identities=20% Similarity=0.146 Sum_probs=59.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCC------------------CCCceeeeEEEEEEECCeEEEEEEEecCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTD------------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 64 (110)
+..+|+++|+.++|||||+.++....- ... ..-+.... ......+.....+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~-~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLS-FISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSE-EEEEEBTESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccc-cccccccccccceeecccccc
Confidence 457899999999999999999985432 110 00011111 111111244567999999999
Q ss_pred cccccCCcccccCCcEEEEEEECCChhH
Q 033852 65 EDYNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 65 ~~~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
.+|.......++.+|++|+|.|..+.-.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~ 108 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQ 108 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBST
T ss_pred cceeecccceecccccceeeeecccccc
Confidence 9887766777889999999999986433
No 228
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=2.9e-10 Score=81.26 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=52.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCccc----cccCC---cccccC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLR---PLSYRG 77 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~---~~~~~~ 77 (110)
..+|+|+|.++||||||++++......- .+..|.-......+...+ ..+.+||+||..+ ...+. -.++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 3479999999999999999998765322 111121111111233333 5689999999632 11111 123567
Q ss_pred CcEEEEEEECCC
Q 033852 78 ADVFILAFSLIS 89 (110)
Q Consensus 78 ~~~~il~~d~~~ 89 (110)
++++|+|+|+++
T Consensus 237 advLv~VVD~s~ 248 (500)
T PRK12296 237 CAVLVHVVDCAT 248 (500)
T ss_pred cCEEEEEECCcc
Confidence 999999999985
No 229
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.11 E-value=5.6e-10 Score=81.60 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEECCeEEEEEEEecCCccccccC------Ccccc--cCCcEEEE
Q 033852 13 GDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL 83 (110)
Q Consensus 13 G~~~~GKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~il 83 (110)
|++|||||||++++.+..+.....|..... ....+..++. .+++||+||+.++... ...++ ..+|+++.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999887644333433222 2334445554 4789999999877654 23333 37899999
Q ss_pred EEECCChhH
Q 033852 84 AFSLISKAS 92 (110)
Q Consensus 84 ~~d~~~~~s 92 (110)
|+|.++.+.
T Consensus 79 VvDat~ler 87 (591)
T TIGR00437 79 VVDASNLER 87 (591)
T ss_pred EecCCcchh
Confidence 999998543
No 230
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.11 E-value=2.7e-10 Score=72.81 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=57.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC------CCC-----CC---ceeeeEE-EEEEECCeEEEEEEEecCCccccccC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFP------TDY-----VP---TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~------~~~-----~~---~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
.++++++|..++|||||+.+++..... ..+ .+ ..+.... ..........++.+.|+||..+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 578999999999999999999753100 000 00 1112221 12233344567899999999887665
Q ss_pred CcccccCCcEEEEEEECCCh
Q 033852 71 RPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~ 90 (110)
....+..+|++++|.|.+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG 101 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC
Confidence 56677889999999999864
No 231
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=6.2e-10 Score=73.59 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=52.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEecCCccccc--c--------CC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--R--------LR 71 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--~--------~~ 71 (110)
...++|+|+|.+|||||||++++.+...... ..+............++ ..+.+||+||-.+.. . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3578999999999999999999998764322 11222111111222333 568999999976442 1 01
Q ss_pred ccccc--CCcEEEEEEECCC
Q 033852 72 PLSYR--GADVFILAFSLIS 89 (110)
Q Consensus 72 ~~~~~--~~~~~il~~d~~~ 89 (110)
..++. ..++++++..++.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHhccCCCEEEEEEcCCC
Confidence 22332 5788888866653
No 232
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=1.1e-09 Score=78.62 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=73.5
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
+++-++|.++|+.++|||.|++.|+++.+..++..+....+.. .+...++...+.+-|.+-. ....+.... ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 4567899999999999999999999999888766666555533 4555677778888888765 443343333 679999
Q ss_pred EEEEECCChhHHHHHHh
Q 033852 82 ILAFSLISKASYENVAK 98 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~ 98 (110)
+++||.+++.||..+..
T Consensus 500 ~~~YDsS~p~sf~~~a~ 516 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAE 516 (625)
T ss_pred EEecccCCchHHHHHHH
Confidence 99999999999998854
No 233
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.09 E-value=1.6e-10 Score=81.12 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=60.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC---CC--CCceeee-----------------EEEEEEECC------eEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DY--VPTVFDN-----------------FSANVVVDG------STVN 55 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~---~~--~~~~~~~-----------------~~~~~~~~~------~~~~ 55 (110)
.+.++++++|..++|||||++.+.+..... +. .-|.... +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999986432111 10 0011100 001000011 1357
Q ss_pred EEEEecCCccccccCCcccccCCcEEEEEEECCC----hhHHHHH
Q 033852 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENV 96 (110)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----~~s~~~~ 96 (110)
+++||+||+++|..........+|++++|+|.++ .++.+.+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l 126 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL 126 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH
Confidence 8999999999887666666778999999999995 3455544
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.08 E-value=3.5e-10 Score=79.13 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=60.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC-----C--CC-----CCC--CCceeeeE-EEEEEECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN-----T--FP-----TDY--VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~-----~--~~-----~~~--~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
..+.++++++|..++|||||+.++... + +. ... ....+... ...+........+.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356889999999999999999999732 1 00 000 00011111 112333444567899999999887
Q ss_pred ccCCcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 68 NRLRPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
..........+|++++|+|+++ +++.+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l 120 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHI 120 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 5444444567899999999987 4444433
No 235
>COG1159 Era GTPase [General function prediction only]
Probab=99.08 E-value=5.5e-10 Score=74.58 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEecCCccccccC--------C
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------R 71 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~ 71 (110)
...+..-++++|.|+||||||++++++.+..-. ...|........++.+ ..++.+.||||-.+-+.. .
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 345667899999999999999999999875321 1122222223233333 567899999996443222 2
Q ss_pred cccccCCcEEEEEEECCCh
Q 033852 72 PLSYRGADVFILAFSLISK 90 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~ 90 (110)
...+.++|++++|.|.++.
T Consensus 80 ~~sl~dvDlilfvvd~~~~ 98 (298)
T COG1159 80 RSALKDVDLILFVVDADEG 98 (298)
T ss_pred HHHhccCcEEEEEEecccc
Confidence 2336689999999999873
No 236
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.07 E-value=8.9e-10 Score=80.83 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=59.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---CCCCCC--CCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
-|.++|..++|||||++++.+. .+.++. -.|....+.. ....+ ...+.+||+||+++|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~-~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY-WPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEE-EecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 4789999999999999999853 333222 2222222221 21212 234799999999988655556678999999
Q ss_pred EEEECCC---hhHHHHH
Q 033852 83 LAFSLIS---KASYENV 96 (110)
Q Consensus 83 l~~d~~~---~~s~~~~ 96 (110)
+|+|.++ +++.+.+
T Consensus 80 LVVda~eg~~~qT~ehl 96 (614)
T PRK10512 80 LVVACDDGVMAQTREHL 96 (614)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 9999987 5666655
No 237
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.06 E-value=3.9e-10 Score=79.33 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=57.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCC------CceeeeE-----------------EEEEEEC--C----eE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNF-----------------SANVVVD--G----ST 53 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~------~~~~~~~-----------------~~~~~~~--~----~~ 53 (110)
..+.++++++|+.++|||||+.++.+. +..... .|....+ ......+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 457899999999999999999988542 111100 1111111 0000001 0 13
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCC----hhHHHHH
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENV 96 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----~~s~~~~ 96 (110)
..+.+||+||+++|..........+|++++|+|+++ .++.+.+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l 131 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL 131 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH
Confidence 578999999998875433334456799999999995 4555554
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.05 E-value=6.5e-10 Score=77.85 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=57.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC-------CCCC--CCC-----CceeeeEE-EEEEECCeEEEEEEEecCCccccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPT--DYV-----PTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~-------~~~~--~~~-----~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
++.++++++|..++|||||+.++++. .+.. ... ...+.... ..........++.++|+||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46889999999999999999999862 1000 000 01112111 122233344568999999998775
Q ss_pred cCCcccccCCcEEEEEEECCCh
Q 033852 69 RLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~ 90 (110)
......+..+|++++|+|..+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCC
Confidence 5444567789999999999873
No 239
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.05 E-value=2.9e-10 Score=84.39 Aligned_cols=92 Identities=15% Similarity=0.037 Sum_probs=61.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CCCC--CCCC------------ceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT--DYVP------------TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~--~~~~------------~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
+.-+|+++|..++|||||+++++.. .... .... ..+.... ..........++.+||+||..++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3458999999999999999999742 1100 0000 0011111 11222223467999999999988
Q ss_pred ccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 68 NRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
......+++.+|++++|+|.++..+.+..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~ 117 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE 117 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH
Confidence 77778889999999999999886554433
No 240
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.05 E-value=3.1e-10 Score=73.65 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=54.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC--CCCC--------------C----------CCCc---eeeeE-EEEEEECCeEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN--TFPT--------------D----------YVPT---VFDNF-SANVVVDGSTVNLG 57 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~--~~~~--------------~----------~~~~---~~~~~-~~~~~~~~~~~~~~ 57 (110)
+|+++|..++|||||+.+++.. .... . ..+. .+... .....+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4789999999999999998632 1100 0 0000 01111 11122333456799
Q ss_pred EEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 58 i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+||++|+.+|.......++.+|++|+|+|.++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999987766555667789999999999884
No 241
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.05 E-value=2.5e-09 Score=68.15 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=51.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC---CceeeeEEEEEEECCeEEEEEEEecCCcccccc--------C---Cc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------L---RP 72 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~ 72 (110)
++|+++|.+|||||||++.+++.+...... +............++ ..+.++|+||-.+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999875432211 111111111222333 4689999999654321 1 11
Q ss_pred ccccCCcEEEEEEECCC
Q 033852 73 LSYRGADVFILAFSLIS 89 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~ 89 (110)
....+.|++|+|.++.+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 12357899999999886
No 242
>PRK12736 elongation factor Tu; Reviewed
Probab=99.00 E-value=1.1e-09 Score=76.61 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=57.7
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCC------CC---C-----CceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT------DY---V-----PTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~------~~---~-----~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
.++.++++++|..++|||||+.++++..... .+ + ...+.... ...........+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 3567899999999999999999997531100 00 0 01111111 12223334456889999999887
Q ss_pred ccCCcccccCCcEEEEEEECCC
Q 033852 68 NRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~ 89 (110)
.......+..+|++++|+|.++
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 5544455678999999999986
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.00 E-value=1.2e-09 Score=78.10 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC------CCCCCC--------CCceeeeEEE-EEEECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN------TFPTDY--------VPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~------~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
+.+.++++++|..++|||||+.+++.. .....+ ....+..... ..........+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 346789999999999999999999852 111110 0011111111 1122333457899999999887
Q ss_pred ccCCcccccCCcEEEEEEECCCh
Q 033852 68 NRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
..-....+..+|++++|+|..+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 55445566789999999998864
No 244
>CHL00071 tufA elongation factor Tu
Probab=98.98 E-value=1.8e-09 Score=75.90 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=58.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCC------CCCC--------ceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT------DYVP--------TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~------~~~~--------~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
+.+.++++++|..++|||||++++++..-.. .+.. ..+.... ..........++.+.|+||..+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4578999999999999999999998641100 0000 0111111 11223334456789999998877
Q ss_pred ccCCcccccCCcEEEEEEECCCh
Q 033852 68 NRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.......+..+|++++|.|....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCC
Confidence 55555567789999999999863
No 245
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.97 E-value=8.6e-10 Score=67.02 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=43.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCcc----ccccCCcccccCCcEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~~~~il 83 (110)
|++++|+.|+|||||++++.+.+.... .|....|. =.+.|+||.= .+..-.-....+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~i~~~-----------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQAIEYY-----------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--ccceeEec-----------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988665222 22111111 1246777741 111111122336777777
Q ss_pred EEECCChhH
Q 033852 84 AFSLISKAS 92 (110)
Q Consensus 84 ~~d~~~~~s 92 (110)
+.|.+++.+
T Consensus 70 l~dat~~~~ 78 (143)
T PF10662_consen 70 LQDATEPRS 78 (143)
T ss_pred EecCCCCCc
Confidence 777776543
No 246
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.97 E-value=1.4e-09 Score=70.30 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=48.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC-Cc--eeeeEEEEEEECCeEEEEEEEecCCcccccc--------CC---c
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LR---P 72 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~---~ 72 (110)
++|+|+|..|+||||+++.+++....+... .. ...........++. .+.++||||-.+... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876543321 11 11111223345664 478999999532211 11 1
Q ss_pred ccccCCcEEEEEEECCC
Q 033852 73 LSYRGADVFILAFSLIS 89 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~ 89 (110)
....+.|++|+|+.+++
T Consensus 79 ~~~~g~ha~llVi~~~r 95 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR 95 (212)
T ss_dssp HTTT-ESEEEEEEETTB
T ss_pred hccCCCeEEEEEEecCc
Confidence 12347899999999883
No 247
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.96 E-value=3.3e-09 Score=75.56 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=70.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEEC--CeEEEEEEEecCCccccccCCcccccC----C
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRG----A 78 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 78 (110)
.-.|+|+|+.++|||||+.+|...+ .+.++.+-.|.. .+.-+ ....++.+|..+|...+..+.+..+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4589999999999999999986543 334555555533 23221 223578999998877776666655542 3
Q ss_pred cEEEEEEECCChhHHHHHHhchhccccccc
Q 033852 79 DVFILAFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 79 ~~~il~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
-.+|||.|++.|..+-+-..+|+..+++++
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i 131 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHI 131 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHH
Confidence 467889999999986544499998877654
No 248
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.94 E-value=3.9e-09 Score=72.06 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=35.4
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
..+.+.+||++|+...+..|..++.+++++|+|.|+++-
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 346788999999999999999999999999999999873
No 249
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=6.2e-09 Score=63.20 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEECCeEEEEEEEecCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~ 64 (110)
+++++|.+|||||||++++........ ....+.. ....+.+++ .+.+||+||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775432 2222221 122333433 3689999985
No 250
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.90 E-value=1.3e-08 Score=68.49 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCC----------Cceeee-EEEEEEECCeEEEEEEEecCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----------PTVFDN-FSANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~i~d~~g 63 (110)
.++|+|+|.+|+|||||++.+++........ .+.... ....+.-++..+.+.++||+|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 6899999999999999999999875543320 111111 122444577889999999998
No 251
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=74.04 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=56.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccc---------cCCcccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~ 75 (110)
-.|+++|-++||||||.+|++.... ...+..+..+.........+.+ +.+.||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 4699999999999999999998754 2333333334334444455544 8999999976432 1233346
Q ss_pred cCCcEEEEEEECCC
Q 033852 76 RGADVFILAFSLIS 89 (110)
Q Consensus 76 ~~~~~~il~~d~~~ 89 (110)
..||++|+|.|...
T Consensus 82 ~eADvilfvVD~~~ 95 (444)
T COG1160 82 EEADVILFVVDGRE 95 (444)
T ss_pred HhCCEEEEEEeCCC
Confidence 68999999999876
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.89 E-value=2.7e-09 Score=75.82 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC--CCCCC------------------------CCCc---eeeeEEE-EEEECCe
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------YVPT---VFDNFSA-NVVVDGS 52 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~------------------------~~~~---~~~~~~~-~~~~~~~ 52 (110)
.++.++++++|..++|||||+.+++.. ..... ..+. .+..... .......
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 356889999999999999999988642 11000 0000 0111111 1223445
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
...+.+.|+||+++|.......++.+|++|+|+|.++
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 6789999999999998777788899999999999987
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.89 E-value=3.2e-08 Score=67.10 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=59.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc-------CCccccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYR 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~ 76 (110)
.-..++++|.|.||||||++.+.+..... .|.-|.-....-.+.. ...++++.|+||.-+-.+ ..-...|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 34689999999999999999998876433 2332222222223333 446689999997432211 1224578
Q ss_pred CCcEEEEEEECCChhH-HHHH
Q 033852 77 GADVFILAFSLISKAS-YENV 96 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s-~~~~ 96 (110)
.||.+++|.|+....+ .+.+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i 160 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDII 160 (365)
T ss_pred cCCEEEEEEecCCChhHHHHH
Confidence 9999999999997766 4444
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=98.88 E-value=9.1e-09 Score=72.16 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=58.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCC---C---CC-----CC---ceeeeEE-EEEEECCeEEEEEEEecCCccccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---T---DY-----VP---TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~---~---~~-----~~---~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
.+.++++++|..++|||||+.+++..... . .+ .+ ..+.... ..........++.+.|+||..+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56789999999999999999999863110 0 00 00 1111111 122233344568899999998776
Q ss_pred cCCcccccCCcEEEEEEECCCh
Q 033852 69 RLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~ 90 (110)
......+..+|++++|.|..+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCC
Confidence 5555667899999999999864
No 255
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=5e-10 Score=72.68 Aligned_cols=84 Identities=25% Similarity=0.365 Sum_probs=55.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCC---CCCceeeeEEEEEEECCeEEEEEEEecCCcccc-----ccCCcccccC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRG 77 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~~~ 77 (110)
.-|++++|.+|+|||++-..+..+-.... .-+|......+.... +...+.+||++||+.+ .......++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl--Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL--GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh--hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 45899999999999998776654321111 112222322222222 3366899999999854 2245567889
Q ss_pred CcEEEEEEECCChh
Q 033852 78 ADVFILAFSLISKA 91 (110)
Q Consensus 78 ~~~~il~~d~~~~~ 91 (110)
.++++.+||+...+
T Consensus 82 V~vli~vFDves~e 95 (295)
T KOG3886|consen 82 VQVLIYVFDVESRE 95 (295)
T ss_pred heeeeeeeeccchh
Confidence 99999999998764
No 256
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.88 E-value=3.3e-09 Score=69.17 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=52.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-----------------------eeeEEEE--------------EEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------------FDNFSAN--------------VVVD 50 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-----------------------~~~~~~~--------------~~~~ 50 (110)
|++++|+.++|||||+.+|..+.|.+...... +...... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999876644211000 0000000 0011
Q ss_pred CeEEEEEEEecCCccccccCCcccc--cCCcEEEEEEECCCh
Q 033852 51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISK 90 (110)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~--~~~~~~il~~d~~~~ 90 (110)
.....+.+.|+||.++|.......+ +.+|++++|.|.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 1235688999999988744333333 368999999998764
No 257
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.87 E-value=3.2e-08 Score=69.50 Aligned_cols=90 Identities=23% Similarity=0.271 Sum_probs=62.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccC-----------C
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~ 71 (110)
..+|++++|-|+||||||++++++.+- ......|..+.....+..+++. +.+.||+|..+-..+ .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 359999999999999999999998753 2232344455556666666765 679999985432111 1
Q ss_pred cccccCCcEEEEEEECCChhHHHHH
Q 033852 72 PLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 72 ~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
...+..++.+++|.|.+.+-+-+..
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~ 279 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL 279 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH
Confidence 2235579999999999987654433
No 258
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.86 E-value=6.7e-09 Score=74.31 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=56.7
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCC--CCCCC----------CCc-------------------eeeeEEE-EEEEC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPT-------------------VFDNFSA-NVVVD 50 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~~----------~~~-------------------~~~~~~~-~~~~~ 50 (110)
.+..++++++|..++|||||+.+++... ..... ..+ .+..... .....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3568999999999999999999987442 11100 000 0011111 11123
Q ss_pred CeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
....++.++|+||+++|.......++.+|++++|+|.+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3445789999999887754333446899999999998753
No 259
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.84 E-value=3.3e-09 Score=74.56 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=54.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC--CCCC-----------CCCc------------------eeeeEEE-EEEECCeEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTD-----------YVPT------------------VFDNFSA-NVVVDGSTV 54 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~--~~~~-----------~~~~------------------~~~~~~~-~~~~~~~~~ 54 (110)
++++++|..++|||||+.+++... .... .-.+ .+..... .........
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986331 1110 0000 0001111 112233445
Q ss_pred EEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.+.++|+||+++|.......+..+|++++|+|....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 789999999988854444567899999999998754
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.84 E-value=1.3e-08 Score=72.36 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=60.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhc--CCCCCC------------------------CCC---ceeeeEE-EEEEECCe
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------YVP---TVFDNFS-ANVVVDGS 52 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~------------------------~~~---~~~~~~~-~~~~~~~~ 52 (110)
+.+.++++++|..++|||||+.+++. +..... ..+ ..+.... ........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45788999999999999999999875 211100 000 0011111 11223445
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
...+.|.|+||+.+|..-....+..+|++++|.|.++.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 57899999999998866556667899999999999863
No 261
>PRK12739 elongation factor G; Reviewed
Probab=98.83 E-value=5.7e-09 Score=77.63 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=58.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CCCC--CCC------------CceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT--DYV------------PTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~--~~~------------~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
+..+|+++|..++|||||+++++.. .... ... ...+.... ..........++.++|+||..+|
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4568999999999999999999742 1100 000 00011111 11122223467899999999888
Q ss_pred ccCCcccccCCcEEEEEEECCChhH
Q 033852 68 NRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
.......++.+|++|+|+|..+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~ 111 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 7777788899999999999987543
No 262
>PLN03127 Elongation factor Tu; Provisional
Probab=98.81 E-value=2.4e-08 Score=71.03 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=56.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC------CCCCCC---C--C---ceeeeE-EEEEEECCeEEEEEEEecCCccccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPTDY---V--P---TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~------~~~~~~---~--~---~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
.+.++++++|..++|||||+.++... .....+ + + ..+... ...........++.+.|+||..+|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46789999999999999999998621 100000 0 0 011111 1122334445678999999998775
Q ss_pred cCCcccccCCcEEEEEEECCCh
Q 033852 69 RLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.........+|++++|.|.++.
T Consensus 139 ~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCC
Confidence 4433455679999999999763
No 263
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.81 E-value=3.8e-09 Score=75.66 Aligned_cols=88 Identities=27% Similarity=0.375 Sum_probs=73.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+++|+-++|..++|||+|+++|+.+.|.+.. .+.+..|.+.+.++++...+-+.|.+|..+ ..|...+|++|+
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 36889999999999999999999999998774 444555677777888888888999887322 356778999999
Q ss_pred EEECCChhHHHHHH
Q 033852 84 AFSLISKASYENVA 97 (110)
Q Consensus 84 ~~d~~~~~s~~~~~ 97 (110)
||.+-+..+|+.+.
T Consensus 102 vf~~~d~~s~q~v~ 115 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQ 115 (749)
T ss_pred EEEeccccCHHHHH
Confidence 99999999999984
No 264
>PRK12740 elongation factor G; Reviewed
Probab=98.80 E-value=3.3e-09 Score=78.62 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=58.0
Q ss_pred ECCCCCcHHHHHHHHhcCCC--CC--CCCC--c----------eeeeEE-EEEEECCeEEEEEEEecCCccccccCCccc
Q 033852 12 VGDGAVGKTCMLISYTSNTF--PT--DYVP--T----------VFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLS 74 (110)
Q Consensus 12 lG~~~~GKtsl~~~~~~~~~--~~--~~~~--~----------~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 74 (110)
+|..++|||||+++++...- .. .... + .+.... .........+.+.+||+||..++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999954311 00 0000 0 011111 111222344779999999998877777778
Q ss_pred ccCCcEEEEEEECCChhHHHHHHhchh
Q 033852 75 YRGADVFILAFSLISKASYENVAKKVF 101 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~~~~w~ 101 (110)
++.+|++++++|.++..+.... ..|.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~ 106 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWR 106 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHH
Confidence 8999999999999987666554 4443
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.6e-08 Score=69.24 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcC--CCCCC----------------------CCCce-----eeeEEE-EEEECC
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD----------------------YVPTV-----FDNFSA-NVVVDG 51 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~----------------------~~~~~-----~~~~~~-~~~~~~ 51 (110)
++.+.++++++|+..+|||||+-+++.. .+.+. .+.+. +..+.. ......
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 5678999999999999999999998753 22110 00000 111111 122334
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECCChh
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~ 91 (110)
..+.++|.|+||..+|-.-.-.-.++||+.|||.|+.+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 4567999999998877554445677899999999998763
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.3e-08 Score=70.03 Aligned_cols=81 Identities=27% Similarity=0.308 Sum_probs=59.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccc-ccc--------CCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNR--------LRPL 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~--------~~~~ 73 (110)
..++++++|.|+||||||++.+...+.. .....|..+.....+++++.+ +.+.||+|..+ -.. ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence 4589999999999999999999987642 222344456666677777765 67899999655 111 1223
Q ss_pred cccCCcEEEEEEEC
Q 033852 74 SYRGADVFILAFSL 87 (110)
Q Consensus 74 ~~~~~~~~il~~d~ 87 (110)
.++.+|++++|+|.
T Consensus 345 ~~~~advi~~vvda 358 (531)
T KOG1191|consen 345 RIERADVILLVVDA 358 (531)
T ss_pred HHhhcCEEEEEecc
Confidence 36689999999999
No 267
>PTZ00258 GTP-binding protein; Provisional
Probab=98.76 E-value=5e-08 Score=68.18 Aligned_cols=83 Identities=23% Similarity=0.206 Sum_probs=51.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ce-eeeEEEEEEECCe---------------EEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 67 (110)
..++|.++|.++||||||++.+.+........| +. .... ..+.+.+. ..++++.|+||...-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~-g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNT-ARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceE-EEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 467999999999999999999976653322112 21 1111 12222211 245899999995432
Q ss_pred c----cCCcc---cccCCcEEEEEEECC
Q 033852 68 N----RLRPL---SYRGADVFILAFSLI 88 (110)
Q Consensus 68 ~----~~~~~---~~~~~~~~il~~d~~ 88 (110)
. .+... .++.+|++++|.|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 12222 356899999999974
No 268
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=5.8e-08 Score=59.70 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=38.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE-EEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g 63 (110)
...+++++|.+++|||||++++.+... ....++.+...... +..++ .+.+||+||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 456899999999999999999986553 33345555443322 22222 488999998
No 269
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.74 E-value=6.2e-08 Score=60.58 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=38.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~ 64 (110)
..++++++|.+++|||||++++....+... .+..+..... .+..+ ..+.++|+||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 457999999999999999999998776422 2222232222 23332 34789999984
No 270
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.73 E-value=5.1e-08 Score=71.75 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=51.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC-CCCC--CCceeeeEEEEEEECCeEEEEEEEecCCcccccc-------C---C
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---R 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~---~ 71 (110)
..++|+|+|.+|+||||+++.+++... .... ..|... .......++ ..+.++||||..+... + .
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 357899999999999999999998753 2221 112221 111122333 4589999999764311 1 1
Q ss_pred ccccc--CCcEEEEEEECCC
Q 033852 72 PLSYR--GADVFILAFSLIS 89 (110)
Q Consensus 72 ~~~~~--~~~~~il~~d~~~ 89 (110)
..++. ..|++|+|..++.
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~ 213 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDM 213 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCC
Confidence 11333 5899999988763
No 271
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.72 E-value=2.3e-08 Score=68.97 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=33.7
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
+.+.+||++|+...+..|..++.+++++|+|.|+++
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd 219 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSE 219 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcc
Confidence 557899999999999999999999999999999997
No 272
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.72 E-value=3.9e-08 Score=66.96 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=67.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEEC--CeEEEEEEEecCCccccccCCcccccC---Cc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRG---AD 79 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~---~~ 79 (110)
.-.|+|+|+.|+|||||+.++.+.+-. .+-.+-.|.. .++.+ +.-.++.+|-..|.--...+....+.. ++
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 447999999999999999998877622 2333333422 33322 233667888888876666655544432 23
Q ss_pred -EEEEEEECCChhHHHHHHhchhccccccc
Q 033852 80 -VFILAFSLISKASYENVAKKVFNCSWLLI 108 (110)
Q Consensus 80 -~~il~~d~~~~~s~~~~~~~w~~~~~~~~ 108 (110)
.+|++.|++++...-+-.++|....++++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehi 158 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHI 158 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 46778999999775444499998877764
No 273
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.71 E-value=9.5e-09 Score=71.24 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCce--eeeEEEEEEECCeEEEEEEEecCCccccccCCcc-----ccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-----SYR 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-----~~~ 76 (110)
..++|+|.|++|+||||||+.+.+-.-. +...++. +............--.+.+||.||...-..-... -+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 4789999999999999999999753221 2222322 1111111111111123789999996533222222 244
Q ss_pred CCcEEEEEEE
Q 033852 77 GADVFILAFS 86 (110)
Q Consensus 77 ~~~~~il~~d 86 (110)
.-|.+|++.+
T Consensus 114 ~yD~fiii~s 123 (376)
T PF05049_consen 114 RYDFFIIISS 123 (376)
T ss_dssp G-SEEEEEES
T ss_pred ccCEEEEEeC
Confidence 6788887755
No 274
>PRK00007 elongation factor G; Reviewed
Probab=98.71 E-value=2.6e-08 Score=74.23 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=58.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc--CCCCC--CCC------------CceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPT--DYV------------PTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~--~~~------------~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
+..+|+++|..++|||||+++++. +.... ... ...+.... ...........+.+.|+||..+|
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 455999999999999999999974 22110 000 00111111 11222223467899999998877
Q ss_pred ccCCcccccCCcEEEEEEECCChhHHH
Q 033852 68 NRLRPLSYRGADVFILAFSLISKASYE 94 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~~s~~ 94 (110)
..-....++.+|++++|.|....-+-+
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~q 115 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQ 115 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchh
Confidence 555566678899999999987654333
No 275
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.70 E-value=4.2e-08 Score=72.46 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=55.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC-CCCC-----------CCCc--e-----------------eeeEEE-EEEECC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTD-----------YVPT--V-----------------FDNFSA-NVVVDG 51 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~-~~~~-----------~~~~--~-----------------~~~~~~-~~~~~~ 51 (110)
+..++++++|..++|||||+.+++... .... ...+ . +..... ......
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 457899999999999999999988532 1110 0000 0 000000 111223
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
...++.++|+||.++|.......+..+|++++|+|.++.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 345678999999987754333457789999999999753
No 276
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.69 E-value=1.3e-07 Score=65.60 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=50.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCce-eeeEEEEEEECCe---------------EEEEEEEecCCcccc--
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY-- 67 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~-- 67 (110)
+++.++|.++||||||++++.+..... .+..+. .... ..+.+.+. ...+++.|+||..+-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~-G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE-EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999998876322 111111 1111 11122111 135899999996432
Q ss_pred --ccCCcc---cccCCcEEEEEEECC
Q 033852 68 --NRLRPL---SYRGADVFILAFSLI 88 (110)
Q Consensus 68 --~~~~~~---~~~~~~~~il~~d~~ 88 (110)
..+... .++.+|+++.|.|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112222 356899999999984
No 277
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=1.3e-07 Score=58.29 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=35.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g 63 (110)
..++++++|.+|||||||++++........ .+..+..... .+..+. .+.+.|+||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999987654222 2222222111 122222 267899998
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.68 E-value=2.1e-08 Score=76.04 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=64.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCC---------CC---ceeeeEEE---EEEE--------------CCeE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDY---------VP---TVFDNFSA---NVVV--------------DGST 53 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~---------~~---~~~~~~~~---~~~~--------------~~~~ 53 (110)
+.-+|+++|..++|||||+.+++...- .... .+ ..+..+.. .+.. .+..
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 455899999999999999999875421 0000 00 00111110 0111 1235
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+.+++.|+||+.+|..-....++.+|++|+|.|..+.-..+.. ..|-.....
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~ 149 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE 149 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHC
Confidence 7789999999999977777788999999999999876444433 344443333
No 279
>PTZ00416 elongation factor 2; Provisional
Probab=98.68 E-value=3.1e-08 Score=75.07 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=58.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--CCCCCCC-c-----------eeeeEEE---EEEEC--------CeEEEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP-T-----------VFDNFSA---NVVVD--------GSTVNLGLW 59 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~~~~-~-----------~~~~~~~---~~~~~--------~~~~~~~i~ 59 (110)
+.-+|+++|..++|||||+.+++... ....... + .+..+.. ..... +....+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34589999999999999999998531 1110000 0 0111110 11111 225678999
Q ss_pred ecCCccccccCCcccccCCcEEEEEEECCChhH
Q 033852 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 60 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
|+||..+|..-....++.+|++|+|.|..+.-.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~ 130 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC 130 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence 999998887766777899999999999988543
No 280
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.65 E-value=7.8e-08 Score=61.26 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=55.1
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE-EEECCeEEEEEEEecCC----------ccccccCC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g----------~~~~~~~~ 71 (110)
+....-|+++|-++||||||++.+++.+-....+.|.|.+...+ ..++++ +.+.|.|| ++....+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 34556899999999999999999999763233344445443332 223333 77999998 23334455
Q ss_pred ccccc---CCcEEEEEEECCCh
Q 033852 72 PLSYR---GADVFILAFSLISK 90 (110)
Q Consensus 72 ~~~~~---~~~~~il~~d~~~~ 90 (110)
..|++ +..+++++.|.-.+
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~ 119 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHP 119 (200)
T ss_pred HHHHhhchhheEEEEEEECCCC
Confidence 55554 35667778887654
No 281
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=63.24 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=52.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEE---CCeEEEEEEEecCCcc--ccccCCccc-----
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV---DGSTVNLGLWDTAGQE--DYNRLRPLS----- 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~--~~~~~~~~~----- 74 (110)
....+++.|.|+||||||++.+.+.+..-+.-|.. .+.+++ .....++++.||||.= ....+.+-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT----TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT----TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc----ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 45689999999999999999998877543322311 222222 3344678999999942 222222111
Q ss_pred -c-cCCcEEEEEEECCCh
Q 033852 75 -Y-RGADVFILAFSLISK 90 (110)
Q Consensus 75 -~-~~~~~~il~~d~~~~ 90 (110)
+ .-+++++++||.+..
T Consensus 243 AL~hl~~~IlF~~D~Se~ 260 (346)
T COG1084 243 ALRHLAGVILFLFDPSET 260 (346)
T ss_pred HHHHhcCeEEEEEcCccc
Confidence 1 136888899998863
No 282
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.63 E-value=2e-07 Score=58.58 Aligned_cols=54 Identities=26% Similarity=0.178 Sum_probs=35.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g 63 (110)
.++++++|.+++|||||++++.+...... .+..+.... ..+..+. .+.++|+||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 47999999999999999999998654222 222222221 1222322 478999998
No 283
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.62 E-value=2.2e-07 Score=62.34 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=37.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~ 64 (110)
..++++++|.+|||||||++++.+...... .+..+.+. ...+.++. .+.++|+||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 468999999999999999999987654322 11112211 11233322 3689999997
No 284
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.61 E-value=1.4e-07 Score=63.23 Aligned_cols=79 Identities=20% Similarity=0.139 Sum_probs=48.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCC-ce-eeeEEEEEEECCe---------------EEEEEEEecCCcccc----
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVP-TV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY---- 67 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~---- 67 (110)
+.++|.++||||||++++.+........| +. .... ..+.+.+. ...+++.|++|..+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~-g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee-eeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 47899999999999999988765322112 11 2211 12222221 235899999995421
Q ss_pred ccCCccc---ccCCcEEEEEEECC
Q 033852 68 NRLRPLS---YRGADVFILAFSLI 88 (110)
Q Consensus 68 ~~~~~~~---~~~~~~~il~~d~~ 88 (110)
..+...+ ++.+|+++.|.|..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222223 46799999999874
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.59 E-value=8.5e-08 Score=71.87 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=58.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC-C-CCCC---------CCce---eeeEEE---E--EEECCeEEEEEEEecCCccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT-F-PTDY---------VPTV---FDNFSA---N--VVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~-~-~~~~---------~~~~---~~~~~~---~--~~~~~~~~~~~i~d~~g~~~ 66 (110)
.-+|+++|..++|||||+.+++... . .... .+.. +.+... . ...++....+.+.|+||..+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3479999999999999999997531 1 1100 0000 011100 0 11234567899999999998
Q ss_pred cccCCcccccCCcEEEEEEECCChhH
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
|.......++.+|++|+|.|......
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~ 125 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVM 125 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCC
Confidence 87777778899999999999887533
No 286
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.5e-08 Score=64.03 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=61.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCccccc---CCcEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFIL 83 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~il 83 (110)
-.++++|..++|||+|..++..+.+.....+..+.. ....+.+.. .++.|.||+.+.+.-...++. .+-++++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~--a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE--ATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccce--eeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 368999999999999999999996655432222111 111122222 789999999988775555555 7889999
Q ss_pred EEECC-ChhHHHHHHhchhcc
Q 033852 84 AFSLI-SKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~-~~~s~~~~~~~w~~~ 103 (110)
|.|.. .......+.+..+..
T Consensus 115 VVDSa~f~k~vrdvaefLydi 135 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDI 135 (238)
T ss_pred EEeccccchhhHHHHHHHHHH
Confidence 88764 344555554555543
No 287
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=5.1e-07 Score=60.92 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=38.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~ 65 (110)
..++++++|.+|||||||++++.+...... .+..+.+.. ..+..+. .+.++|+||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998764322 222222221 1233332 37799999973
No 288
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.3e-07 Score=70.32 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=75.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC--CCCC--C-------CC-----CceeeeE-EEEEEECCe-EEEEEEEecCCcc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--D-------YV-----PTVFDNF-SANVVVDGS-TVNLGLWDTAGQE 65 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~--~-------~~-----~~~~~~~-~~~~~~~~~-~~~~~i~d~~g~~ 65 (110)
.+.-++.++|.-.+|||||..+++.. .... + .+ ...+.++ ...+.+... .+.+++.||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 34568999999999999999998743 2211 0 00 0112222 223333334 5889999999999
Q ss_pred ccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccccccC
Q 033852 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
+|-.-..+.++-+|++++|+|....-..+.- ..|....+..+|
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~~vp 130 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKYGVP 130 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhcCCC
Confidence 9999888999999999999999987776666 777777666655
No 289
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.49 E-value=8.1e-07 Score=61.16 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=44.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCC----------CCCceeeeEE-EEEEECCeEEEEEEEecCCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
-.+.++++|++|.|||||++.+++...... ..++...... ..+.-++..+.+++.|+||-.+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 478999999999999999999998743322 1233333332 2444577889999999998443
No 290
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.48 E-value=4.6e-07 Score=57.45 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
...++++|.+|||||||++++....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998754
No 291
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.6e-06 Score=63.64 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=56.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc------CCccccc-
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~- 76 (110)
+..+++++|.||||||||.+++.+.+.. .++....-....-.....+. ++++.|.||.-.... +...|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3567999999999999999999987643 23222222222223333443 489999999643332 2333332
Q ss_pred -CCcEEEEEEECCChhH
Q 033852 77 -GADVFILAFSLISKAS 92 (110)
Q Consensus 77 -~~~~~il~~d~~~~~s 92 (110)
..|+++-+.|.+|.+.
T Consensus 80 ~~~D~ivnVvDAtnLeR 96 (653)
T COG0370 80 GKPDLIVNVVDATNLER 96 (653)
T ss_pred CCCCEEEEEcccchHHH
Confidence 5799999999999775
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.43 E-value=7.3e-07 Score=58.19 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=49.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
....++++|.+|+|||+|++.+....-........+. +. + ......++.+.|++|.- ..+. ...+.+|+++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--V-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--E-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 4567999999999999999988764211111111121 11 1 11234567899999853 1221 235789999999
Q ss_pred EECCCh
Q 033852 85 FSLISK 90 (110)
Q Consensus 85 ~d~~~~ 90 (110)
.|.+..
T Consensus 111 iDa~~~ 116 (225)
T cd01882 111 IDASFG 116 (225)
T ss_pred EecCcC
Confidence 998754
No 293
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.43 E-value=1.8e-06 Score=53.40 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=34.5
Q ss_pred EEEEEecCCccc----cccCCcccccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 55 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 55 ~~~i~d~~g~~~----~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
.+.|+|+||-.. ...++..++..+|++|+|.+.++..+-... ..|.+..
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~ 154 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQML 154 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHH
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHh
Confidence 467899998642 335677888999999999999986554444 4444443
No 294
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.41 E-value=3e-07 Score=57.06 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-.++++|++|||||||++.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 357999999999999999999874
No 295
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.40 E-value=3.6e-06 Score=55.84 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=63.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCccc--------cccCCccccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 76 (110)
--+++++|=|.||||||+..+...... ..|.-|....+.-.++.++.. +++.|.||.-+ -++. -...+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQv-iavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQV-IAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceE-EEEee
Confidence 468999999999999999998765532 233334444444455666655 78999987432 2222 23467
Q ss_pred CCcEEEEEEECCChhHHHHHHhchhc
Q 033852 77 GADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
.||.+++|.|.+..+.-..+.++=++
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe 164 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELE 164 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHH
Confidence 89999999999987766554444443
No 296
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.9e-06 Score=59.56 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=41.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCC---------CCCceeeeEEE-EEEECCeEEEEEEEecCCcc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~ 65 (110)
.|.++++|++|.|||||++.++...+... ...+......+ .+.-++..+.+++.||||-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfG 90 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFG 90 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCc
Confidence 58999999999999999999887754432 11122222222 33346778999999999843
No 297
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=2.1e-06 Score=58.91 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=39.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~ 64 (110)
...+++.++|-++|||||||+++.+...... .+..|.+-.. .+.++.. +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3468899999999999999999998875222 2222433222 3334443 789999995
No 298
>PRK12288 GTPase RsgA; Reviewed
Probab=98.34 E-value=7.2e-07 Score=61.71 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=34.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCC-CCCCce---ee--e-EEEEEEECCeEEEEEEEecCCccccc
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV---FD--N-FSANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~---~~--~-~~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
++++|.+|||||||++++....-.. ...+.. |. + ....+.+.+.. .+.|+||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 6899999999999999999764322 112111 11 1 11123333222 489999976653
No 299
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.32 E-value=3.8e-06 Score=51.65 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=34.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCC-ceeeeEEEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVP-TVFDNFSANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g 63 (110)
...+++++|.+|+|||||++.+....-.. ...+ +.... ..+... ..+.+.|+||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 45789999999999999999998765322 1111 11111 112222 2378999998
No 300
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.24 E-value=5.2e-06 Score=57.78 Aligned_cols=82 Identities=18% Similarity=0.084 Sum_probs=52.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CC-CCCCc-eeeeEEEEEEECC---------------eEEEEEEEecCCcccc-
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPT-VFDNFSANVVVDG---------------STVNLGLWDTAGQEDY- 67 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~---------------~~~~~~i~d~~g~~~~- 67 (110)
+++.++|.+++|||||.+.+..... .. .|..+ ..... ..+.+.+ ....+++.|.+|...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~-g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNA-GVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCce-eEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7999999999999999999987765 32 22222 12211 1122211 1246789999985432
Q ss_pred ---ccCCcc---cccCCcEEEEEEECCC
Q 033852 68 ---NRLRPL---SYRGADVFILAFSLIS 89 (110)
Q Consensus 68 ---~~~~~~---~~~~~~~~il~~d~~~ 89 (110)
..+-.. .++.+|+++.|.+..+
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 223333 3578999999998753
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=98.21 E-value=4.1e-06 Score=58.10 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~ 30 (110)
++|+|.+|||||||++.+....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999664
No 302
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.21 E-value=1.4e-06 Score=60.14 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=33.5
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCChh
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~ 91 (110)
..+.++|+|||..-+.-|...+.+++++|+|.++++-+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYd 232 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYD 232 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhh
Confidence 56789999999888888999999999999999998643
No 303
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=3e-06 Score=55.78 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=43.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCC-CC--------ceee-eEEEEEEECCeEEEEEEEecCCccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VP--------TVFD-NFSANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~-~~--------~~~~-~~~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
..-.|+|+|+|.+|.|||||++.+.......+. .+ |.+. ...+.+.-++...++++.|+||-.+
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 345789999999999999999998766543321 11 1111 1233444577788999999998443
No 304
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=2.3e-06 Score=57.82 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
-.++++|.+|||||||++.+.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4689999999999999999987643
No 305
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=5.1e-06 Score=56.16 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=34.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCCce---e---eeEEEEEEECCeEEEEEEEecCCccccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTV---F---DNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~---~---~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
-.+++|.+|||||||++++....-.. ...+.. | ......+...+.. .|.|+||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 57899999999999999998643211 111111 1 1222234453333 378999876553
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.15 E-value=6.8e-06 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|.+|||||||++++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999998764
No 307
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=4e-06 Score=61.89 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=66.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce---------------eeeE-EEEEE-----ECCeEEEEEEEecC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---------------FDNF-SANVV-----VDGSTVNLGLWDTA 62 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~-----~~~~~~~~~i~d~~ 62 (110)
.....+.++|.-+.|||+|+..+....-++-...+. +-.+ ...++ ..++.+-+++.|++
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 356689999999999999999988653322111000 1111 11111 25677889999999
Q ss_pred CccccccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 63 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
|+..|..-....++.+|++++++|+.+.-.++.-
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE 239 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE 239 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH
Confidence 9999988888889999999999999887665443
No 308
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.12 E-value=5.2e-06 Score=57.77 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+++++|.+|||||||++++....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999998753
No 309
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2e-05 Score=56.64 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=66.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeEEEEEEECC-eEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.-=|.++|.-.-|||||+-.+-..........-. ..-....+..+. ..-.+.|.||||++.|..++.+-..-+|+++|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 3447899999999999999998877644322111 111122344431 22358999999999999999999999999999
Q ss_pred EEECCC---hhHHHHH
Q 033852 84 AFSLIS---KASYENV 96 (110)
Q Consensus 84 ~~d~~~---~~s~~~~ 96 (110)
|.|++| +++.+.+
T Consensus 85 VVa~dDGv~pQTiEAI 100 (509)
T COG0532 85 VVAADDGVMPQTIEAI 100 (509)
T ss_pred EEEccCCcchhHHHHH
Confidence 999998 5555555
No 310
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.4e-05 Score=56.80 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=58.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC--C------------------CCCCCC----Cce-----eeeEE-EEEEECCeE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN--T------------------FPTDYV----PTV-----FDNFS-ANVVVDGST 53 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~--~------------------~~~~~~----~~~-----~~~~~-~~~~~~~~~ 53 (110)
...+.++++|+-.+|||||+.+++.. + ..-.|. .|. +.... ....++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35789999999999999999987753 1 110111 111 11221 122344556
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
..++|.|.||...|-+-.-.-..+||+.+||.|++.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 778999999988876655556678999999999875
No 311
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.07 E-value=2e-06 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
|++++|..|+|||+|.+.+.+...
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ 26 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT 26 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh
Confidence 789999999999999999877653
No 312
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.06 E-value=1.8e-05 Score=51.74 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=40.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CCCCC---CCCceeeeEEEEEEECCeEEEEEEEecCCccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
+-.-|.++|++++|||+|++++.+. .|... ...|.+.-........+....+.+.|++|...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCc
Confidence 3456889999999999999999988 66432 12223332222111113446799999999653
No 313
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.06 E-value=1.4e-05 Score=61.92 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=36.4
Q ss_pred EEEEecCCccccccCCcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
+.|||+||++.|..+....++.+|++++|+|+++ +++++.+
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I 571 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI 571 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH
Confidence 7899999999998888888889999999999997 6777766
No 314
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=5.5e-06 Score=54.69 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=53.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccC---CcccccCCcEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRL---RPLSYRGADVFIL 83 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~~~~il 83 (110)
+++++|...+||||+.+-....-.+.+. -..+..-.. .-++.+.-+.+++||.|||-.+..- ....++++-++|+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 5999999999999977654443322211 111111010 1123344578999999999765332 2334788999999
Q ss_pred EEECCCh--hHHHHH
Q 033852 84 AFSLISK--ASYENV 96 (110)
Q Consensus 84 ~~d~~~~--~s~~~~ 96 (110)
+.|..+. +...++
T Consensus 108 vIDaQddy~eala~L 122 (347)
T KOG3887|consen 108 VIDAQDDYMEALARL 122 (347)
T ss_pred EEechHHHHHHHHHH
Confidence 9998764 444454
No 315
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=2.2e-05 Score=56.87 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=67.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC-CCCCCCC------------CceeeeE----EEEEEECCeEEEEEEEecCCcccccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN-TFPTDYV------------PTVFDNF----SANVVVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~-~~~~~~~------------~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
=++.++..-.=|||||..|++.. .+..... ...|... ......++..+.++++||||+.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 36777888888999999998632 1111100 1112222 11223357779999999999999999
Q ss_pred CCcccccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 70 LRPLSYRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
-..+-+.-++++|++.|.+..-.-+.+...|+-
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA 173 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLA 173 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHH
Confidence 888899999999999999987766766666653
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.7e-05 Score=52.85 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=54.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC-CCC-----CCceeeeEEEEEE-------EC----CeEEEEEEEecCCcc---
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDY-----VPTVFDNFSANVV-------VD----GSTVNLGLWDTAGQE--- 65 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~-----~~~~~~~~~~~~~-------~~----~~~~~~~i~d~~g~~--- 65 (110)
.+++-++|.|+||||||.+.+...... .+| .|..+..+..... .. -....+++.|++|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876532 222 2333333322111 11 134678899988743
Q ss_pred -ccccCCccc---ccCCcEEEEEEECCC
Q 033852 66 -DYNRLRPLS---YRGADVFILAFSLIS 89 (110)
Q Consensus 66 -~~~~~~~~~---~~~~~~~il~~d~~~ 89 (110)
+-+.+-+.| +|++|+++-|.++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 345565555 468999999888764
No 317
>PRK00098 GTPase RsgA; Reviewed
Probab=98.00 E-value=1e-05 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-.++++|.+|||||||++.+.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999998654
No 318
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=9.2e-05 Score=49.33 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=59.3
Q ss_pred eEEEEECCCCC--cHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECC----eEEEEEEEecCCccccccCCcccccCCcE
Q 033852 7 IKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG----STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 7 ~ki~vlG~~~~--GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
-..+|.|-+|| ||-++++++..-.|..+..+.....+.. -++++ ..+.+-|... .+++............+
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg-wtid~kyysadi~lcishi--cde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG-WTIDNKYYSADINLCISHI--CDEKFLPNAEIAEPLQA 81 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec-eEecceeeecceeEEeecc--cchhccCCcccccceee
Confidence 36789999999 9999999999988866533333322221 11222 2222333221 12222222223445788
Q ss_pred EEEEEECCChhHHHHHHhchhccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
++++||++....+..+ ..|++..
T Consensus 82 ~vmvfdlse~s~l~al-qdwl~ht 104 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDAL-QDWLPHT 104 (418)
T ss_pred EEEEEeccchhhhHHH-Hhhcccc
Confidence 9999999999999999 9999843
No 319
>COG2262 HflX GTPases [General function prediction only]
Probab=97.94 E-value=3.6e-05 Score=53.93 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc--CCcc------ccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--LRPL------SYR 76 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--~~~~------~~~ 76 (110)
-..+.++|=.++|||||++++.+.... .....+.-+...+.+.+.+ ...+.+-||.|--+.-+ +... ...
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 457899999999999999999865543 2222333333333444443 23477889988532211 1111 244
Q ss_pred CCcEEEEEEECCChhHHHHH
Q 033852 77 GADVFILAFSLISKASYENV 96 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~~ 96 (110)
.||.++.|.|.+++.-.+.+
T Consensus 271 ~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 271 EADLLLHVVDASDPEILEKL 290 (411)
T ss_pred cCCEEEEEeecCChhHHHHH
Confidence 79999999999999665554
No 320
>PRK13796 GTPase YqeH; Provisional
Probab=97.94 E-value=2.1e-05 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++.++|.+|||||||++++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47899999999999999999864
No 321
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.6e-05 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.|+|.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 322
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=1.7e-05 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+|+|+|++|||||||.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 323
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.85 E-value=0.00011 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=23.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
..+-|.++|+.++|||||+++|...
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhh
Confidence 4688999999999999999999987
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.6e-05 Score=50.25 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+|+++|++|+||||+.+++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998776
No 325
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.83 E-value=1.9e-05 Score=56.66 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=55.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCC---CCCCCC--Cc--eeeeEEEE---------E---EEC-------------
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYV--PT--VFDNFSAN---------V---VVD------------- 50 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~---~~~~~~--~~--~~~~~~~~---------~---~~~------------- 50 (110)
....+.|.++|.-..|||||+..+..-. +.++.. -| .+...... . ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4578899999999999999999988532 111100 01 11111000 0 000
Q ss_pred ---CeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 51 ---GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 51 ---~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.....+.+.|+||.++|-.-....+..+|++++|.|.++.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 0023688999999988754444456789999999999863
No 326
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.82 E-value=2.7e-05 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|.+++..-+.+.|++|+|||||++.+..
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 6777788899999999999999999864
No 327
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.80 E-value=0.00019 Score=49.10 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=55.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcee-eeEEEEEEECCeEEEEEEEecCCcccc----ccCCcccc---cCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLSY---RGA 78 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~~~---~~~ 78 (110)
.+-++|-|++|||||++.+...+.. ..|.-|.- ...- .+..++. .++.+=|.||.-+- +.+-..|+ ..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG-~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG-TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc-eeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4678999999999999999876542 22322221 1111 2222222 23889999985432 33333444 479
Q ss_pred cEEEEEEECCCh---hHHHHHH
Q 033852 79 DVFILAFSLISK---ASYENVA 97 (110)
Q Consensus 79 ~~~il~~d~~~~---~s~~~~~ 97 (110)
+.+++|.|++.. .-++.+.
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~ 297 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQ 297 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHH
Confidence 999999999988 6666663
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=2.6e-05 Score=55.21 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=61.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------CCC-----ceeeeE-EEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-------------YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~-------------~~~-----~~~~~~-~~~~~~~~~~~~~~i~d~~g 63 (110)
++-..++|-.|.+|||||.+.++. +..... .+. ..+.+. +...+.+...+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678899999999999999752 211110 011 112333 33455667778899999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCCh
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+++|..-+.+.+..+|++++|.|.-.-
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG 117 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG 117 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC
Confidence 999988888888899999999998763
No 329
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.78 E-value=8.5e-05 Score=53.16 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=61.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC--CCCCCCC-------C-----ceeeeE-EEEEEECCeEEEEEEEecCCccccccCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN--TFPTDYV-------P-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~--~~~~~~~-------~-----~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
+|+++..-.=|||||+..++.+ .|.+... + ..+..+ .++..+....+.++|.|+||+.+|-.-..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 6788888889999999998753 3332110 0 012222 44444555668899999999999999999
Q ss_pred ccccCCcEEEEEEECCC
Q 033852 73 LSYRGADVFILAFSLIS 89 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~ 89 (110)
+.++-.|+++++.|..+
T Consensus 87 Rvl~MVDgvlLlVDA~E 103 (603)
T COG1217 87 RVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhcceEEEEEEccc
Confidence 99999999999999887
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.78 E-value=2e-05 Score=47.41 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033852 9 CVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~ 27 (110)
|+++|.+|||||||++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
No 331
>PRK07261 topology modulation protein; Provisional
Probab=97.77 E-value=2.8e-05 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|+++|.+|+|||||.+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 332
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00015 Score=52.73 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=63.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE---EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF---SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
=+-++|.-.=|||||+..|.....-.. ...+... ...+....+ -.++|.||||+..|..|+.+-.+-+|.+++|
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 366899999999999999887765322 2222221 113333322 4589999999999999999999999999999
Q ss_pred EECCC---hhHHHHH
Q 033852 85 FSLIS---KASYENV 96 (110)
Q Consensus 85 ~d~~~---~~s~~~~ 96 (110)
...+| +++.+.+
T Consensus 232 VAadDGVmpQT~EaI 246 (683)
T KOG1145|consen 232 VAADDGVMPQTLEAI 246 (683)
T ss_pred EEccCCccHhHHHHH
Confidence 99988 5666655
No 333
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=4.1e-05 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP 32 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~ 32 (110)
.++++|++|+|||||++++..-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 5789999999999999998765543
No 334
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=1e-05 Score=57.20 Aligned_cols=101 Identities=16% Similarity=0.021 Sum_probs=75.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC--------CCCCC-C-------CCceeeeE-EEEEEECCeEEEEEEEecCCccccccC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN--------TFPTD-Y-------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~--------~~~~~-~-------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~ 70 (110)
+|-++..-.+||||..+|++.- ..... . ....+... +..+..+.+..++.+.|+||..+|+.-
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 5667778889999999997642 11110 0 01112233 446777888899999999999999999
Q ss_pred CcccccCCcEEEEEEECCChhHHHHHHhchhcccccccC
Q 033852 71 RPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 71 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
..+.++-.|+++.|||.+-.-.-+.+ ..|....+-.+|
T Consensus 119 verclrvldgavav~dasagve~qtl-tvwrqadk~~ip 156 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKFKIP 156 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCccccee-eeehhccccCCc
Confidence 99999999999999999987777777 888776665554
No 335
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.68 E-value=0.00028 Score=48.67 Aligned_cols=84 Identities=23% Similarity=0.186 Sum_probs=53.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEE---------------CCeEEEEEEEecCCccc-
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVV---------------DGSTVNLGLWDTAGQED- 66 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~i~d~~g~~~- 66 (110)
.++++-++|.++||||||.+.+.........-| |.+.+-. .+.+ ...+..++++|++|..+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a-~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEA-RVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccc-eeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 478999999999999999999988765443222 1122111 1211 22457899999987432
Q ss_pred ---cccCCccc---ccCCcEEEEEEECCC
Q 033852 67 ---YNRLRPLS---YRGADVFILAFSLIS 89 (110)
Q Consensus 67 ---~~~~~~~~---~~~~~~~il~~d~~~ 89 (110)
-..+-+.| +|.+|+++=|.++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33444444 457888887665543
No 336
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=5.9e-05 Score=55.31 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=45.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEE-ECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
++.+-++++|++|+|||||++++...-- ..... .+...++ +.+..-++++.+++. +..++.. ..+-||.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t-k~ti~----~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT-KQTID----EIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH-Hhhhh----ccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeE
Confidence 4678889999999999999988764321 11110 0111122 356667788888873 2222222 234567777
Q ss_pred EEEECC
Q 033852 83 LAFSLI 88 (110)
Q Consensus 83 l~~d~~ 88 (110)
++.|..
T Consensus 139 LlIdgn 144 (1077)
T COG5192 139 LLIDGN 144 (1077)
T ss_pred EEeccc
Confidence 777654
No 337
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00026 Score=44.11 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=37.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 62 (110)
+..+|+.+-|.+||||||++.++...--... -+.+-.+...+.-++..+=+.+.|..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 3468999999999999999988764211111 22233345555556666667777765
No 338
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.67 E-value=6.9e-05 Score=47.18 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=23.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|......-+.++|.+|+|||||++++..
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHH
Confidence 5555566789999999999999998773
No 339
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=4.9e-05 Score=44.87 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998765
No 340
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.65 E-value=3.9e-05 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998755
No 341
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.00024 Score=47.99 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=43.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-----EEEEECCeEEEEEEEecCC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-----ANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~d~~g 63 (110)
.-.++|+.+|..|.|||||+..+++-.|.....+-...... ..+.-.+..+++++.|+.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 34789999999999999999999999887664433222221 1223356778899999987
No 342
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00021 Score=49.60 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=53.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC----CCCCCCCCce-eee----EEE-----EEE-ECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV-FDN----FSA-----NVV-VDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~----~~~~~~~~~~-~~~----~~~-----~~~-~~~~~~~~~i~d~~g~~~~ 67 (110)
.+.++++-++|.-.+|||+|.+++..- .|.....++. +.. ++. ... -.++..++.+.|+||....
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 457899999999999999999998643 3433333322 211 111 111 2466789999999998543
Q ss_pred ccCCcccccCCcEEEEEEECCCh
Q 033852 68 NRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
--..---..-.|..+++.|+...
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcc
Confidence 11111122235677788887653
No 343
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.0003 Score=50.58 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=64.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCC-----C----CC--CceeeeE-----EEEEEE-CCeEEEEEEEecCCcccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN--TFPT-----D----YV--PTVFDNF-----SANVVV-DGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~--~~~~-----~----~~--~~~~~~~-----~~~~~~-~~~~~~~~i~d~~g~~~~ 67 (110)
-+..++..-.=|||||..|++.. ...+ + .. ...|..+ +..... +++.+.+++.||||+.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 35566777778999999998753 1111 1 00 0112222 111222 568899999999999999
Q ss_pred ccCCcccccCCcEEEEEEECCChhHHHHHHhchh
Q 033852 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKVF 101 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~ 101 (110)
.--..+.+..|-+++++.|.+..-.-+.+.+.|+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~Yl 123 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 123 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHH
Confidence 8777778888999999999998777777755554
No 344
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.60 E-value=7.8e-05 Score=43.78 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPT 33 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~ 33 (110)
-.+++.|++|+|||++++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999988765433
No 345
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=6.5e-05 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~ 30 (110)
+.++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999877543
No 346
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.59 E-value=6.2e-05 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~ 30 (110)
++++|++|||||||++.+.+=+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988654
No 347
>PRK06217 hypothetical protein; Validated
Probab=97.57 E-value=8.1e-05 Score=47.01 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+|+|+|.+|+|||||.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 348
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.57 E-value=9.4e-05 Score=39.52 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999987654
No 349
>PRK14530 adenylate kinase; Provisional
Probab=97.56 E-value=0.0001 Score=47.68 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
+|+++|.+||||||+.+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999885
No 350
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.55 E-value=8.1e-05 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998654
No 351
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.55 E-value=7.7e-05 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999998876654
No 352
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.54 E-value=8.3e-05 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.|++.|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999987643
No 353
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00022 Score=49.88 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=56.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCC---CCceeeeEEEE------------EEEC----------------------
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSAN------------VVVD---------------------- 50 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~---~~~~~~~~~~~------------~~~~---------------------- 50 (110)
-|+++|....|||||++.+..+.|+... .||........ ..++
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 5899999999999999999999887532 23332211100 0011
Q ss_pred ---C-eEEEEEEEecCCcc-----------ccccCCcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 51 ---G-STVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 51 ---~-~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
+ .--.++|.|+||.- +|......|...+|.++++||... .+.|.++
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~v 203 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRV 203 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHH
Confidence 0 00146789999831 233455566778999999999654 3445554
No 354
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.52 E-value=0.00014 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+...|.+.|++|||||||++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988764
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.51 E-value=9.6e-05 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987653
No 356
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.51 E-value=0.00011 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++++-|++|+|||||+++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999774
No 357
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.50 E-value=0.00014 Score=38.16 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.++.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999987653
No 358
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.50 E-value=9.5e-05 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-++++|++|||||||++.+-.-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999876544
No 359
>PRK03839 putative kinase; Provisional
Probab=97.50 E-value=0.00011 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999987653
No 360
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.50 E-value=0.00013 Score=47.83 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
|.-...++|+|+|++||||||+.+.+...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33344578999999999999999988653
No 361
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.50 E-value=0.00012 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
..++++|+|.+|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999888754
No 362
>PRK14527 adenylate kinase; Provisional
Probab=97.49 E-value=0.00015 Score=46.03 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.8
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHh
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
|..+..--++++|++|+||||+.+.+.
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 555566679999999999999999876
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.49 E-value=0.00012 Score=44.36 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998754
No 364
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.48 E-value=0.00016 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|+|||||++.+...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998764
No 365
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.47 E-value=0.00012 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999874
No 366
>PRK14532 adenylate kinase; Provisional
Probab=97.47 E-value=0.00013 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+++++|.+||||||+.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 367
>PF05729 NACHT: NACHT domain
Probab=97.47 E-value=0.00011 Score=44.88 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++|.|++|+|||+++..++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998754
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.46 E-value=0.00011 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|.+++|||||++.+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988653
No 369
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00015 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-=.+++|++|||||||++.+-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 345899999999999999875
No 370
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.45 E-value=0.00013 Score=45.83 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
-++++|.+||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 371
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.44 E-value=0.00016 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++.++|+.|+|||||++++...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999987753
No 372
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00022 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+..-++|+|++|||||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999998754
No 373
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.44 E-value=0.00014 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999976
No 374
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.42 E-value=0.00013 Score=42.80 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999887654
No 375
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=46.05 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.=++|+|++|||||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999865
No 376
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00015 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||||++.+..
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999776
No 377
>PRK13949 shikimate kinase; Provisional
Probab=97.41 E-value=0.00018 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|+|+|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 378
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.40 E-value=0.00013 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=18.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.--+++.|++|+|||++++++...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999988653
No 379
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.40 E-value=0.00014 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=16.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.--++|.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999997654
No 380
>PRK14531 adenylate kinase; Provisional
Probab=97.40 E-value=0.00019 Score=45.33 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+|+++|++|+||||+.+++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988753
No 381
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.39 E-value=0.00017 Score=42.67 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.-.+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999987654
No 382
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.39 E-value=0.00017 Score=45.99 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
+.+.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999865
No 383
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00022 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
+.++|++||||||+++.+.+=+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 56999999999999999876553
No 384
>PRK08233 hypothetical protein; Provisional
Probab=97.37 E-value=0.00019 Score=44.89 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|++.|.+|+|||||.+++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5678889999999999999874
No 385
>PRK02496 adk adenylate kinase; Provisional
Probab=97.37 E-value=0.00022 Score=44.92 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++++|++|+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 386
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.35 E-value=0.00018 Score=45.47 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+|+|+|.+|+||||+.+.+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 387
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.33 E-value=0.00024 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 388
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32 E-value=0.00025 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999875
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.32 E-value=0.00019 Score=46.23 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|+|+|++||||||+.+++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 390
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00022 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|||||||++-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 378999999999999998764
No 391
>PRK13695 putative NTPase; Provisional
Probab=97.32 E-value=0.00025 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+++++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998643
No 392
>PLN02674 adenylate kinase
Probab=97.32 E-value=0.00028 Score=46.77 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
....+++++|++|+||+|+..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 393
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.32 E-value=0.00024 Score=44.63 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
|+++|.+||||||+.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999988764
No 394
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.00023 Score=47.50 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999876
No 395
>PF13173 AAA_14: AAA domain
Probab=97.31 E-value=0.00022 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
-+++.|+.+||||+++.++...-.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999886544
No 396
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.28 E-value=0.00072 Score=40.31 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
--|++-|+-|+|||||++.++..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999998754
No 397
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.28 E-value=0.00029 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.28 E-value=0.0003 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999877643
No 399
>PLN02200 adenylate kinase family protein
Probab=97.28 E-value=0.00041 Score=45.68 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
....++++|.+||||||+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988764
No 400
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.27 E-value=0.00031 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987643
No 401
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00099 Score=46.37 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCC--C-------CCC---Ccee-------------------eeEEEE-EE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T-------DYV---PTVF-------------------DNFSAN-VV 48 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~-------~~~---~~~~-------------------~~~~~~-~~ 48 (110)
|..+..++++-.|.-.=||||||-|++.+.-. + ..+ .+.+ ..+... ..
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 35677899999999999999999999875110 0 000 0110 111000 11
Q ss_pred ECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 49 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
....+-++.+-|+||++.|-----.-.+.||+.|++.|.
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA 119 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA 119 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence 233455688999999988743223345678999998885
No 402
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.27 E-value=0.00036 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-+|+++|.+|+||||+.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999874
No 403
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.26 E-value=0.00037 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-.++++|+.|+||||+++.+.+..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 379999999999999999998765
No 404
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.26 E-value=0.00032 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 405
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.26 E-value=0.00033 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 406
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.26 E-value=0.00029 Score=42.55 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
--+++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999998865
No 407
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.25 E-value=0.00034 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 408
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.25 E-value=0.00034 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
No 409
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.25 E-value=0.00032 Score=45.36 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+|+|+|.+|+||||+.+.+..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 410
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.24 E-value=0.0002 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
++...|+++|..|+|||||++|+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 35678999999999999999998653
No 411
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.24 E-value=0.00044 Score=45.22 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+.+-+.+.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998764
No 412
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.24 E-value=0.00025 Score=43.80 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999987643
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.24 E-value=0.00036 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.++++|+.|+|||||++.++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999988754
No 414
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.24 E-value=0.00029 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
+.+.|.+|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999988763
No 415
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00032 Score=45.11 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998764
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00035 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 417
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.23 E-value=0.00037 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987654
No 418
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.23 E-value=0.00035 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999987654
No 419
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00033 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+++.|++|+||||+++.+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999987654
No 420
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.23 E-value=0.00048 Score=42.60 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..|+++|.+|+|||++...+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 3899999999999999887754
No 421
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.22 E-value=0.00038 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 422
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00038 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988653
No 423
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0012 Score=49.84 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=58.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc----eeeeEEEEEEE---------CCe----EEEEEEEecCCcccccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT----VFDNFSANVVV---------DGS----TVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~~----~~~~~i~d~~g~~~~~~ 69 (110)
-=|+++|.-.+|||-|+..+.+.+........ .+.+|.....+ +.. ---+-++|+||.+.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 35889999999999999998876654432211 13333221100 010 11256889999999999
Q ss_pred CCcccccCCcEEEEEEECCC
Q 033852 70 LRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~ 89 (110)
++.+...-||.+|+|.|+..
T Consensus 556 lRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred hhhccccccceEEEEeehhc
Confidence 99999999999999999975
No 424
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.22 E-value=0.00038 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987754
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00039 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988754
No 426
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00039 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 427
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.0004 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00036 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.=+++.|++||||||+++.+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999988765
No 429
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.21 E-value=0.0002 Score=47.27 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=21.4
Q ss_pred EEEEEecCCccccccCCcccc--------cCCcEEEEEEECC---ChhHHH
Q 033852 55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFILAFSLI---SKASYE 94 (110)
Q Consensus 55 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~il~~d~~---~~~s~~ 94 (110)
.+.++|+|||.++...+.... ...-+++++.|.. ++..|-
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~ 142 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV 142 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH
Confidence 678999999988755443332 3455677788865 445453
No 430
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00039 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 431
>PHA00729 NTP-binding motif containing protein
Probab=97.21 E-value=0.00044 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.++++.|.+|+|||+|..++...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999987654
No 432
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.20 E-value=0.0004 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 433
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.20 E-value=0.0004 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987643
No 434
>PRK00625 shikimate kinase; Provisional
Probab=97.20 E-value=0.00039 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 435
>PRK14528 adenylate kinase; Provisional
Probab=97.20 E-value=0.00043 Score=43.95 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
+++++|++|+||||+.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999876
No 436
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.20 E-value=0.00038 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999988754
No 437
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.20 E-value=0.00042 Score=45.07 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999987654
No 438
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.19 E-value=0.00041 Score=45.00 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 439
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.19 E-value=0.00039 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 440
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00043 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988653
No 441
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.18 E-value=0.00045 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887653
No 442
>PRK14529 adenylate kinase; Provisional
Probab=97.18 E-value=0.00042 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++|+++|++||||||+.+++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987653
No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=0.00064 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999877643
No 444
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=0.00045 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999987754
No 445
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.00085 Score=46.35 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=49.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCccc----cccCCcccc---cCCc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD 79 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~---~~~~ 79 (110)
.+-++|-|++|||||++.+...+.. ..|.-|...-.--.+.+ ...-.+.+=|.||.-+ -..+-..|+ ..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 3568999999999999998876532 23322221111112222 2223477889997533 233444444 4788
Q ss_pred EEEEEEECCChh
Q 033852 80 VFILAFSLISKA 91 (110)
Q Consensus 80 ~~il~~d~~~~~ 91 (110)
+++.+.|++..+
T Consensus 240 vL~hviD~s~~~ 251 (369)
T COG0536 240 VLLHVIDLSPID 251 (369)
T ss_pred eeEEEEecCccc
Confidence 999999998543
No 446
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.18 E-value=0.00044 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 447
>PF13479 AAA_24: AAA domain
Probab=97.17 E-value=0.00039 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCcHHHHHHHH
Q 033852 5 RFIKCVTVGDGAVGKTCMLISY 26 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~ 26 (110)
..++++|-|++|+|||+|+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5689999999999999999887
No 448
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00049 Score=43.24 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 449
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00046 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987543
No 450
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00045 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999987643
No 451
>PRK14526 adenylate kinase; Provisional
Probab=97.17 E-value=0.00045 Score=44.82 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+++++|++|+||||+.+.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988763
No 452
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.16 E-value=0.00049 Score=43.30 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999998764
No 453
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00057 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=21.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.....|++.|.+|||||||.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888899999999999998653
No 454
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.16 E-value=0.00074 Score=41.89 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 455
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.16 E-value=0.0004 Score=46.06 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5889999999999999998754
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.15 E-value=0.00044 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999986654
No 457
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.15 E-value=0.00045 Score=44.49 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999987654
No 458
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.15 E-value=0.00047 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999877643
No 459
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.15 E-value=0.00048 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887653
No 460
>PRK10908 cell division protein FtsE; Provisional
Probab=97.14 E-value=0.00051 Score=44.55 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 461
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.14 E-value=0.00051 Score=44.06 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999987643
No 462
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.14 E-value=0.00069 Score=43.86 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999987653
No 463
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.14 E-value=0.00053 Score=43.04 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999987653
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.14 E-value=0.00047 Score=41.93 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 678999999999999987654
No 465
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.14 E-value=0.00053 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999877643
No 466
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.14 E-value=0.00046 Score=48.81 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-+|+|+|.+|+|||||++.+...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999998754
No 467
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.14 E-value=0.00055 Score=42.62 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987653
No 468
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.14 E-value=0.0005 Score=45.08 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998765
No 469
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00051 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 470
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00052 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987643
No 471
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.13 E-value=0.0005 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 472
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.13 E-value=0.00049 Score=43.42 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++++|++|+||++|.++++..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998763
No 473
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00053 Score=45.01 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 474
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.12 E-value=0.00052 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
=++++|++||||+|++..++...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999998763
No 475
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.12 E-value=0.00056 Score=43.98 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988754
No 476
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.12 E-value=0.00048 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
...+.++|..|+|||||++++...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998753
No 477
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.12 E-value=0.00055 Score=43.13 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 478
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.12 E-value=0.0004 Score=44.66 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.-.++|.|+.|+|||+|++.+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3467888999999999999988654
No 479
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00054 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998764
No 480
>PRK10646 ADP-binding protein; Provisional
Probab=97.12 E-value=0.0029 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+++-|+-|+|||+|++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 481
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.11 E-value=0.00057 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999987543
No 482
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00056 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 483
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.0006 Score=42.63 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987664
No 484
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.11 E-value=0.00058 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999877654
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.11 E-value=0.00056 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 486
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00057 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
=.+.++|+.|+|||||++.+.+-.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999877543
No 487
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.10 E-value=0.00053 Score=47.23 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+++++|.+|+|||||++.+...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999998753
No 488
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.10 E-value=0.00051 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
|++.|..||||||+++++..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999763
No 489
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0016 Score=49.20 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=70.6
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCC--CCC------------CCCceeeeEE-EEEEECCeEEEEEEEecCCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTD------------YVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY 67 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~------------~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~ 67 (110)
++..-+++++..-.=|||||+.++...+- ... ...+.+.... ..+..-.+.+.++++|+||+.+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34455788888889999999999875421 111 0112222221 12223346788999999999999
Q ss_pred ccCCcccccCCcEEEEEEECCC---hhHHHHHHhchhcccc
Q 033852 68 NRLRPLSYRGADVFILAFSLIS---KASYENVAKKVFNCSW 105 (110)
Q Consensus 68 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~~~~w~~~~~ 105 (110)
.+......+-+|++++..|+.. .++..-+++-|.+-++
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~ 126 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK 126 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc
Confidence 9988888888999999999876 4556566556876544
No 490
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00041 Score=42.75 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+..-+|++.|.||+|||||.+++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3566899999999999999999873
No 491
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.10 E-value=0.00059 Score=45.20 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 492
>PRK08356 hypothetical protein; Provisional
Probab=97.09 E-value=0.00094 Score=42.59 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
.-+++.|++||||||+.+++....+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~~g~ 30 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEEKGF 30 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
Confidence 4589999999999999999964333
No 493
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00059 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999987653
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00061 Score=43.32 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 495
>PRK06762 hypothetical protein; Provisional
Probab=97.09 E-value=0.00056 Score=42.34 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+++.|.+||||||+.+.+...
T Consensus 4 li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999987643
No 496
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.09 E-value=0.0006 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 497
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00056 Score=43.88 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 67899999999999999977653
No 498
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.09 E-value=0.0008 Score=43.02 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
.+.++|++|+|||||++-+.+=..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 688999999999999998776443
No 499
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00061 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887553
No 500
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.09 E-value=0.00065 Score=42.47 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999987653
Done!