Query 033852
Match_columns 110
No_of_seqs 129 out of 1243
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.8E-30 6.3E-35 166.8 7.8 102 4-106 11-113 (216)
2 2j0v_A RAC-like GTP-binding pr 99.9 4.2E-27 1.4E-31 149.6 11.8 107 1-107 4-110 (212)
3 3reg_A RHO-like small GTPase; 99.9 2.2E-26 7.4E-31 144.6 13.4 105 3-107 20-124 (194)
4 3q3j_B RHO-related GTP-binding 99.9 1.6E-26 5.4E-31 147.8 12.2 104 4-107 25-128 (214)
5 1m7b_A RND3/RHOE small GTP-bin 99.9 2.1E-26 7.3E-31 143.7 12.4 104 3-106 4-107 (184)
6 3t5g_A GTP-binding protein RHE 99.9 4.1E-26 1.4E-30 141.6 13.0 104 1-105 1-104 (181)
7 2atx_A Small GTP binding prote 99.9 1.9E-26 6.6E-31 144.7 11.2 105 3-107 15-119 (194)
8 2q3h_A RAS homolog gene family 99.9 5.3E-26 1.8E-30 143.4 12.3 105 3-107 17-121 (201)
9 1gwn_A RHO-related GTP-binding 99.9 5.9E-26 2E-30 144.4 12.1 103 4-106 26-128 (205)
10 3c5c_A RAS-like protein 12; GD 99.9 5.9E-26 2E-30 142.3 11.5 102 3-106 18-119 (187)
11 3bwd_D RAC-like GTP-binding pr 99.9 6.1E-27 2.1E-31 145.2 6.6 106 1-106 3-108 (182)
12 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.4E-25 8.3E-30 138.3 13.0 103 4-106 3-105 (186)
13 2iwr_A Centaurin gamma 1; ANK 99.9 5.4E-26 1.9E-30 140.7 9.3 95 1-102 2-96 (178)
14 3oes_A GTPase rhebl1; small GT 99.9 1.6E-25 5.4E-30 141.5 11.1 105 1-106 19-123 (201)
15 2j1l_A RHO-related GTP-binding 99.9 1.9E-25 6.5E-30 142.6 10.6 102 5-106 33-134 (214)
16 4gzl_A RAS-related C3 botulinu 99.9 4.5E-25 1.6E-29 139.9 12.2 104 4-107 28-131 (204)
17 3ihw_A Centg3; RAS, centaurin, 99.9 3.6E-25 1.2E-29 138.5 11.0 98 3-107 17-114 (184)
18 2gco_A H9, RHO-related GTP-bin 99.9 7E-25 2.4E-29 138.6 11.8 103 4-106 23-125 (201)
19 2fv8_A H6, RHO-related GTP-bin 99.9 6.7E-25 2.3E-29 139.2 11.6 103 4-106 23-125 (207)
20 3kkq_A RAS-related protein M-R 99.9 6.7E-25 2.3E-29 136.3 10.6 101 4-105 16-116 (183)
21 1z08_A RAS-related protein RAB 99.9 1.3E-24 4.5E-29 133.3 11.6 103 3-106 3-106 (170)
22 3tw8_B RAS-related protein RAB 99.9 2.2E-24 7.6E-29 133.3 12.5 104 3-107 6-110 (181)
23 2bcg_Y Protein YP2, GTP-bindin 99.9 1.6E-24 5.4E-29 137.1 12.0 105 1-106 1-108 (206)
24 2ew1_A RAS-related protein RAB 99.9 9.2E-25 3.1E-29 138.6 10.7 102 4-106 24-126 (201)
25 1c1y_A RAS-related protein RAP 99.9 5.2E-25 1.8E-29 134.6 9.0 100 5-105 2-101 (167)
26 2fn4_A P23, RAS-related protei 99.9 1.3E-24 4.3E-29 134.4 10.7 100 4-104 7-106 (181)
27 3clv_A RAB5 protein, putative; 99.9 1.1E-24 3.7E-29 136.7 10.4 105 1-106 2-144 (208)
28 3cpj_B GTP-binding protein YPT 99.9 1.6E-24 5.5E-29 138.9 11.3 103 3-106 10-113 (223)
29 2fu5_C RAS-related protein RAB 99.9 5.2E-25 1.8E-29 136.8 8.8 102 4-106 6-108 (183)
30 2atv_A RERG, RAS-like estrogen 99.9 5.8E-25 2E-29 138.3 9.0 104 1-106 23-126 (196)
31 1ek0_A Protein (GTP-binding pr 99.9 3.1E-24 1.1E-28 131.3 11.2 101 5-106 2-103 (170)
32 1z2a_A RAS-related protein RAB 99.9 1.7E-24 5.7E-29 132.4 10.0 103 3-106 2-105 (168)
33 1r2q_A RAS-related protein RAB 99.9 3E-24 1E-28 131.4 11.1 103 3-106 3-106 (170)
34 2gf9_A RAS-related protein RAB 99.9 6.4E-24 2.2E-28 132.8 12.5 102 4-106 20-122 (189)
35 4dsu_A GTPase KRAS, isoform 2B 99.9 2.6E-24 8.9E-29 133.9 10.6 102 4-106 2-103 (189)
36 1u8z_A RAS-related protein RAL 99.9 1.2E-24 4.1E-29 132.8 8.8 101 5-106 3-103 (168)
37 2a5j_A RAS-related protein RAB 99.9 2.2E-24 7.4E-29 135.2 10.1 102 4-106 19-121 (191)
38 1wms_A RAB-9, RAB9, RAS-relate 99.9 4E-24 1.4E-28 131.9 11.1 101 4-105 5-106 (177)
39 2bme_A RAB4A, RAS-related prot 99.9 3.4E-24 1.1E-28 133.3 10.8 101 4-105 8-109 (186)
40 1z0j_A RAB-22, RAS-related pro 99.9 5.7E-24 1.9E-28 130.3 11.6 103 3-106 3-106 (170)
41 2hup_A RAS-related protein RAB 99.9 7.4E-25 2.5E-29 138.7 7.8 102 4-106 27-129 (201)
42 2hxs_A RAB-26, RAS-related pro 99.9 5.2E-25 1.8E-29 136.1 6.8 103 3-106 3-107 (178)
43 2efe_B Small GTP-binding prote 99.9 5E-24 1.7E-28 131.9 10.9 102 4-106 10-112 (181)
44 3tkl_A RAS-related protein RAB 99.9 5.3E-24 1.8E-28 133.4 11.0 102 4-106 14-116 (196)
45 1zbd_A Rabphilin-3A; G protein 99.9 7.4E-24 2.5E-28 133.7 11.7 102 4-106 6-108 (203)
46 2bov_A RAla, RAS-related prote 99.9 2.4E-24 8.1E-29 135.9 9.3 102 4-106 12-113 (206)
47 2oil_A CATX-8, RAS-related pro 99.9 7.6E-24 2.6E-28 132.7 11.6 102 4-106 23-125 (193)
48 3con_A GTPase NRAS; structural 99.9 1.1E-23 3.7E-28 131.6 12.2 102 4-106 19-120 (190)
49 1kao_A RAP2A; GTP-binding prot 99.9 3.5E-24 1.2E-28 130.7 9.6 100 5-105 2-101 (167)
50 1x3s_A RAS-related protein RAB 99.9 6.7E-24 2.3E-28 132.7 11.0 101 5-106 14-115 (195)
51 1z06_A RAS-related protein RAB 99.9 2.7E-24 9.3E-29 134.5 9.1 102 4-106 18-121 (189)
52 2fg5_A RAB-22B, RAS-related pr 99.9 5.4E-24 1.9E-28 133.6 10.5 102 4-106 21-123 (192)
53 2a9k_A RAS-related protein RAL 99.9 2.5E-24 8.5E-29 133.7 8.8 102 4-106 16-117 (187)
54 2g6b_A RAS-related protein RAB 99.9 1.2E-23 4E-28 130.2 11.7 103 3-106 7-111 (180)
55 2p5s_A RAS and EF-hand domain 99.9 1.2E-24 4E-29 137.3 7.2 103 3-106 25-128 (199)
56 3q72_A GTP-binding protein RAD 99.9 5E-24 1.7E-28 130.4 9.7 99 5-105 1-99 (166)
57 1z0f_A RAB14, member RAS oncog 99.9 4.7E-24 1.6E-28 131.6 9.5 102 4-106 13-115 (179)
58 1g16_A RAS-related protein SEC 99.9 2.9E-24 1E-28 131.6 8.4 101 5-106 2-103 (170)
59 1vg8_A RAS-related protein RAB 99.9 1.6E-23 5.5E-28 132.3 12.0 101 4-105 6-107 (207)
60 2yc2_C IFT27, small RAB-relate 99.9 6.7E-25 2.3E-29 138.5 5.5 103 3-106 17-124 (208)
61 2y8e_A RAB-protein 6, GH09086P 99.9 1E-23 3.5E-28 130.1 10.7 100 5-105 13-113 (179)
62 2o52_A RAS-related protein RAB 99.9 2.8E-24 9.6E-29 135.8 8.1 101 4-105 23-124 (200)
63 2erx_A GTP-binding protein DI- 99.9 4E-24 1.4E-28 131.1 8.5 100 5-105 2-101 (172)
64 1ky3_A GTP-binding protein YPT 99.9 5E-24 1.7E-28 131.8 8.7 102 3-105 5-108 (182)
65 2il1_A RAB12; G-protein, GDP, 99.9 2.7E-24 9.2E-29 135.1 7.3 102 4-106 24-126 (192)
66 2gf0_A GTP-binding protein DI- 99.9 3.9E-24 1.3E-28 134.3 7.8 103 1-104 2-105 (199)
67 2ce2_X GTPase HRAS; signaling 99.9 8.3E-24 2.8E-28 128.7 8.7 101 5-106 2-102 (166)
68 3cph_A RAS-related protein SEC 99.9 1.7E-23 6E-28 132.6 10.5 102 4-106 18-120 (213)
69 3bc1_A RAS-related protein RAB 99.9 1.9E-23 6.6E-28 130.2 10.4 102 4-106 9-121 (195)
70 2nzj_A GTP-binding protein REM 99.9 1.6E-23 5.5E-28 128.9 9.7 102 4-106 2-105 (175)
71 2wkq_A NPH1-1, RAS-related C3 99.9 6.5E-23 2.2E-27 137.5 13.2 103 5-107 154-256 (332)
72 2f7s_A C25KG, RAS-related prot 99.9 8.2E-24 2.8E-28 134.8 8.3 102 4-106 23-135 (217)
73 4bas_A ADP-ribosylation factor 99.9 1.6E-23 5.3E-28 131.5 9.3 97 4-104 15-112 (199)
74 3cbq_A GTP-binding protein REM 99.9 2.9E-24 9.9E-29 135.5 5.8 102 4-106 21-124 (195)
75 3gj0_A GTP-binding nuclear pro 99.9 4.1E-24 1.4E-28 136.7 6.2 102 4-106 13-115 (221)
76 3th5_A RAS-related C3 botulinu 99.8 2.2E-25 7.4E-30 141.0 0.0 104 4-107 28-131 (204)
77 3q85_A GTP-binding protein REM 99.9 1.7E-23 5.9E-28 128.2 8.5 100 6-106 2-103 (169)
78 2g3y_A GTP-binding protein GEM 99.9 4.9E-23 1.7E-27 131.8 10.1 101 4-105 35-138 (211)
79 3t1o_A Gliding protein MGLA; G 99.9 7.8E-24 2.7E-28 132.4 6.1 101 3-105 11-130 (198)
80 3l0i_B RAS-related protein RAB 99.9 3.8E-24 1.3E-28 135.0 4.3 102 4-106 31-133 (199)
81 3dz8_A RAS-related protein RAB 99.9 1.1E-24 3.9E-29 136.5 1.8 102 4-106 21-123 (191)
82 1zd9_A ADP-ribosylation factor 99.9 2.1E-23 7.1E-28 130.5 7.5 97 4-104 20-116 (188)
83 1m2o_B GTP-binding protein SAR 99.9 3.1E-22 1.1E-26 125.6 11.5 96 4-104 21-116 (190)
84 2cjw_A GTP-binding protein GEM 99.9 1.3E-22 4.5E-27 127.6 9.5 101 4-105 4-107 (192)
85 1f6b_A SAR1; gtpases, N-termin 99.9 1E-22 3.5E-27 128.6 8.9 97 4-105 23-119 (198)
86 1ksh_A ARF-like protein 2; sma 99.9 4.3E-22 1.5E-26 124.0 11.1 96 4-104 16-111 (186)
87 2h57_A ADP-ribosylation factor 99.9 2.1E-22 7E-27 126.0 9.2 97 4-104 19-116 (190)
88 1zj6_A ADP-ribosylation factor 99.9 1.1E-22 3.7E-27 127.0 7.5 98 4-106 14-111 (187)
89 2zej_A Dardarin, leucine-rich 99.9 1.7E-23 5.8E-28 130.7 3.6 100 6-106 2-108 (184)
90 2h17_A ADP-ribosylation factor 99.9 1.8E-22 6.1E-27 125.5 8.1 96 4-104 19-114 (181)
91 2f9l_A RAB11B, member RAS onco 99.9 7.2E-22 2.5E-26 124.6 11.0 100 4-104 3-103 (199)
92 4djt_A GTP-binding nuclear pro 99.9 6.4E-23 2.2E-27 130.7 5.9 102 4-106 9-112 (218)
93 1r8s_A ADP-ribosylation factor 99.9 8.7E-23 3E-27 124.6 5.7 93 7-104 1-93 (164)
94 1upt_A ARL1, ADP-ribosylation 99.9 1.1E-21 3.8E-26 120.2 10.7 96 4-104 5-100 (171)
95 1oix_A RAS-related protein RAB 99.9 1.5E-21 5.1E-26 122.7 11.1 99 5-104 28-127 (191)
96 2b6h_A ADP-ribosylation factor 99.9 3.4E-22 1.2E-26 125.6 7.6 97 3-104 26-122 (192)
97 1fzq_A ADP-ribosylation factor 99.9 2.8E-22 9.5E-27 124.9 6.1 96 4-104 14-109 (181)
98 2x77_A ADP-ribosylation factor 99.9 7.8E-22 2.7E-26 123.2 7.6 96 4-104 20-115 (189)
99 1moz_A ARL1, ADP-ribosylation 99.9 7E-22 2.4E-26 122.5 6.8 97 4-105 16-112 (183)
100 3llu_A RAS-related GTP-binding 99.9 7.3E-22 2.5E-26 124.3 5.7 98 3-104 17-123 (196)
101 2fh5_B SR-beta, signal recogni 99.8 9.9E-22 3.4E-26 124.9 6.1 100 3-104 4-106 (214)
102 3r7w_A Gtpase1, GTP-binding pr 99.8 3.1E-21 1.1E-25 129.3 7.5 95 5-102 2-104 (307)
103 3r7w_B Gtpase2, GTP-binding pr 99.8 1.7E-21 5.7E-26 131.4 3.2 92 8-104 1-100 (331)
104 2lkc_A Translation initiation 99.8 1.3E-19 4.4E-24 111.7 10.1 92 3-96 5-100 (178)
105 3lvq_E ARF-GAP with SH3 domain 99.8 6.6E-20 2.2E-24 129.4 9.9 96 4-104 320-415 (497)
106 3o47_A ADP-ribosylation factor 99.8 8.3E-21 2.8E-25 128.4 3.6 96 4-103 163-258 (329)
107 3c5h_A Glucocorticoid receptor 99.8 6.3E-21 2.1E-25 124.9 2.4 103 3-106 16-192 (255)
108 2ged_A SR-beta, signal recogni 99.8 5.2E-20 1.8E-24 115.1 2.6 95 4-104 46-145 (193)
109 1nrj_B SR-beta, signal recogni 99.8 4.6E-20 1.6E-24 117.5 1.3 92 4-104 10-109 (218)
110 2gj8_A MNME, tRNA modification 99.7 3.8E-18 1.3E-22 105.4 6.6 98 4-105 2-109 (172)
111 3dpu_A RAB family protein; roc 99.7 3E-18 1E-22 122.1 6.0 101 2-106 37-146 (535)
112 1svi_A GTP-binding protein YSX 99.7 1.7E-18 5.7E-23 108.3 3.7 98 2-102 19-131 (195)
113 2wji_A Ferrous iron transport 99.7 3.6E-17 1.2E-21 100.3 9.3 86 6-93 3-97 (165)
114 2cxx_A Probable GTP-binding pr 99.7 4E-19 1.4E-23 110.5 0.2 92 7-103 2-105 (190)
115 2wjg_A FEOB, ferrous iron tran 99.7 2.8E-17 9.5E-22 102.2 6.3 96 3-104 4-108 (188)
116 2dyk_A GTP-binding protein; GT 99.7 4.7E-17 1.6E-21 98.6 7.1 84 7-92 2-94 (161)
117 2qu8_A Putative nucleolar GTP- 99.7 3.6E-17 1.2E-21 105.0 6.3 100 4-106 27-138 (228)
118 3def_A T7I23.11 protein; chlor 99.7 6.5E-17 2.2E-21 106.1 6.9 96 5-103 35-141 (262)
119 3iev_A GTP-binding protein ERA 99.7 4.4E-17 1.5E-21 109.3 5.7 103 2-106 6-120 (308)
120 3iby_A Ferrous iron transport 99.7 2.1E-16 7.3E-21 103.6 7.5 93 8-103 3-108 (256)
121 3a1s_A Iron(II) transport prot 99.7 1E-15 3.5E-20 100.4 10.2 91 4-96 3-102 (258)
122 1wf3_A GTP-binding protein; GT 99.6 2.3E-16 7.8E-21 105.6 6.6 92 1-94 1-103 (301)
123 2xtp_A GTPase IMAP family memb 99.6 7E-16 2.4E-20 100.8 7.9 85 4-90 20-118 (260)
124 3pqc_A Probable GTP-binding pr 99.6 1.4E-16 4.7E-21 99.2 4.3 96 3-103 20-131 (195)
125 3gee_A MNME, tRNA modification 99.6 4.7E-16 1.6E-20 109.6 6.6 88 5-94 232-329 (476)
126 3b1v_A Ferrous iron uptake tra 99.6 5.5E-16 1.9E-20 102.5 5.7 89 5-96 2-99 (272)
127 3i8s_A Ferrous iron transport 99.6 1.1E-15 3.7E-20 101.0 6.6 95 5-102 2-109 (274)
128 1h65_A Chloroplast outer envel 99.6 6.4E-16 2.2E-20 101.7 5.1 97 5-104 38-145 (270)
129 3lxx_A GTPase IMAP family memb 99.6 9.9E-16 3.4E-20 99.0 5.9 85 4-90 27-125 (239)
130 3lxw_A GTPase IMAP family memb 99.6 1.5E-15 5.1E-20 99.0 6.3 85 4-90 19-118 (247)
131 3k53_A Ferrous iron transport 99.6 3.4E-15 1.2E-19 98.3 7.8 86 5-92 2-96 (271)
132 2hjg_A GTP-binding protein ENG 99.6 2.3E-16 7.9E-21 110.0 1.9 96 5-104 174-282 (436)
133 1jny_A EF-1-alpha, elongation 99.6 3.7E-16 1.3E-20 109.1 2.2 100 1-105 1-133 (435)
134 4dhe_A Probable GTP-binding pr 99.6 4.5E-16 1.5E-20 99.2 2.0 90 3-92 26-130 (223)
135 1mky_A Probable GTP-binding pr 99.6 5.9E-15 2E-19 103.0 6.6 93 8-102 3-107 (439)
136 4fid_A G protein alpha subunit 99.5 7E-15 2.4E-19 99.7 6.1 52 52-104 159-220 (340)
137 2xtz_A Guanine nucleotide-bind 99.5 2E-15 6.7E-20 103.0 2.8 53 52-105 181-243 (354)
138 2ywe_A GTP-binding protein LEP 99.5 6.9E-15 2.4E-19 106.0 4.9 105 1-106 1-124 (600)
139 3izy_P Translation initiation 99.5 1.8E-16 6.3E-21 112.9 -3.5 91 5-96 3-94 (537)
140 1s0u_A EIF-2-gamma, translatio 99.5 1.1E-13 3.9E-18 95.8 9.8 99 1-100 3-130 (408)
141 1xzp_A Probable tRNA modificat 99.5 4.3E-15 1.5E-19 104.9 2.6 89 6-96 243-342 (482)
142 2qag_A Septin-2, protein NEDD5 99.5 4.2E-15 1.4E-19 101.6 2.3 102 5-106 36-173 (361)
143 3sjy_A Translation initiation 99.5 5.7E-14 2E-18 97.1 7.6 94 2-96 4-117 (403)
144 3geh_A MNME, tRNA modification 99.5 1.1E-14 3.6E-19 102.5 3.5 89 5-95 223-321 (462)
145 1n0u_A EF-2, elongation factor 99.5 2.6E-14 9E-19 106.4 5.8 101 4-105 17-148 (842)
146 3qq5_A Small GTP-binding prote 99.5 2E-14 7E-19 100.0 4.5 92 4-96 32-132 (423)
147 1cip_A Protein (guanine nucleo 99.5 9.7E-14 3.3E-18 94.7 7.5 52 53-105 192-253 (353)
148 2hjg_A GTP-binding protein ENG 99.5 6E-15 2.1E-19 102.9 1.3 89 6-95 3-100 (436)
149 1lnz_A SPO0B-associated GTP-bi 99.5 1.2E-14 3.9E-19 98.9 2.1 96 8-106 160-267 (342)
150 3p26_A Elongation factor 1 alp 99.5 1.6E-14 5.4E-19 102.0 2.9 90 4-93 31-150 (483)
151 3cb4_D GTP-binding protein LEP 99.5 1.5E-14 5.3E-19 104.3 2.7 101 5-106 3-122 (599)
152 3t5d_A Septin-7; GTP-binding p 99.5 2.7E-14 9.1E-19 94.2 3.6 63 3-65 5-76 (274)
153 3ohm_A Guanine nucleotide-bind 99.5 5.2E-13 1.8E-17 90.2 10.0 51 53-104 166-226 (327)
154 4dcu_A GTP-binding protein ENG 99.5 1.3E-14 4.6E-19 101.7 1.8 87 4-92 193-292 (456)
155 1g7s_A Translation initiation 99.5 4.2E-14 1.4E-18 102.0 4.4 93 4-96 3-115 (594)
156 3tr5_A RF-3, peptide chain rel 99.4 4.5E-15 1.5E-19 105.8 -1.0 100 5-105 12-132 (528)
157 1kk1_A EIF2gamma; initiation o 99.4 5.4E-13 1.9E-17 92.4 8.8 94 3-96 7-129 (410)
158 2c78_A Elongation factor TU-A; 99.4 4.1E-14 1.4E-18 97.9 2.7 92 3-94 8-115 (405)
159 2e87_A Hypothetical protein PH 99.4 2.7E-13 9.3E-18 92.4 6.6 98 5-106 166-276 (357)
160 1jal_A YCHF protein; nucleotid 99.4 2.1E-13 7E-18 93.3 5.8 82 7-89 3-108 (363)
161 1d2e_A Elongation factor TU (E 99.4 9.8E-14 3.3E-18 95.8 4.3 88 5-92 2-104 (397)
162 3j2k_7 ERF3, eukaryotic polype 99.4 7.3E-13 2.5E-17 92.6 8.6 87 4-90 15-131 (439)
163 2qtf_A Protein HFLX, GTP-bindi 99.4 2.9E-13 1E-17 92.7 6.3 92 6-101 178-282 (364)
164 1ega_A Protein (GTP-binding pr 99.4 3.4E-13 1.1E-17 90.2 6.3 84 4-89 6-100 (301)
165 1mky_A Probable GTP-binding pr 99.4 3.7E-13 1.3E-17 94.0 6.8 89 5-95 179-281 (439)
166 4dcu_A GTP-binding protein ENG 99.4 2.4E-14 8.3E-19 100.4 0.7 85 5-90 22-115 (456)
167 1wb1_A Translation elongation 99.4 3.8E-13 1.3E-17 95.0 6.5 89 5-96 18-118 (482)
168 2h5e_A Peptide chain release f 99.4 1.3E-13 4.5E-18 98.3 4.0 88 5-92 12-120 (529)
169 1wxq_A GTP-binding protein; st 99.4 1.7E-12 5.8E-17 89.8 9.4 84 7-90 1-114 (397)
170 2ohf_A Protein OLA1, GTP-bindi 99.4 1.6E-13 5.6E-18 94.6 4.1 91 5-96 21-135 (396)
171 1r5b_A Eukaryotic peptide chai 99.4 9.4E-14 3.2E-18 97.7 2.6 85 3-90 40-157 (467)
172 1f60_A Elongation factor EEF1A 99.4 4.2E-13 1.4E-17 94.2 5.7 87 1-90 1-121 (458)
173 1dar_A EF-G, elongation factor 99.4 1.4E-13 4.9E-18 100.7 3.2 98 4-105 10-127 (691)
174 3izq_1 HBS1P, elongation facto 99.4 1.4E-12 4.7E-17 94.4 8.2 84 4-90 165-281 (611)
175 1zun_B Sulfate adenylate trans 99.4 6.5E-13 2.2E-17 92.6 6.2 88 4-91 22-141 (434)
176 1zo1_I IF2, translation initia 99.4 2.5E-14 8.5E-19 101.3 -1.2 91 4-96 2-96 (501)
177 2rdo_7 EF-G, elongation factor 99.4 1.5E-12 5E-17 95.6 8.0 99 4-103 8-130 (704)
178 1pui_A ENGB, probable GTP-bind 99.4 2.8E-13 9.5E-18 85.4 3.2 88 4-94 24-125 (210)
179 2xex_A Elongation factor G; GT 99.4 2.2E-13 7.5E-18 99.8 2.9 97 4-103 8-123 (693)
180 2j69_A Bacterial dynamin-like 99.3 7.6E-13 2.6E-17 97.0 5.2 99 5-104 68-226 (695)
181 2qpt_A EH domain-containing pr 99.3 3.2E-13 1.1E-17 96.7 2.4 98 5-104 64-214 (550)
182 2aka_B Dynamin-1; fusion prote 99.3 1.4E-12 4.8E-17 86.3 4.1 28 5-32 25-52 (299)
183 3avx_A Elongation factor TS, e 99.3 9.4E-13 3.2E-17 100.3 2.2 88 4-91 294-396 (1289)
184 2dy1_A Elongation factor G; tr 99.3 2.9E-12 9.9E-17 93.5 3.7 93 4-96 7-116 (665)
185 2elf_A Protein translation elo 99.3 1.9E-12 6.3E-17 88.9 2.5 72 8-89 23-94 (370)
186 3mca_A HBS1, elongation factor 99.2 2E-12 7E-17 93.3 2.5 86 4-89 175-290 (592)
187 1jwy_B Dynamin A GTPase domain 99.2 4.7E-12 1.6E-16 84.5 3.9 27 5-31 23-49 (315)
188 3t34_A Dynamin-related protein 99.2 4.2E-12 1.4E-16 86.6 3.8 84 7-90 35-185 (360)
189 2qag_C Septin-7; cell cycle, c 99.2 2.6E-11 8.8E-16 84.4 7.3 101 5-105 30-165 (418)
190 1azs_C GS-alpha; complex (lyas 99.2 8.4E-11 2.9E-15 81.4 8.7 57 47-106 212-278 (402)
191 2dby_A GTP-binding protein; GD 99.2 4.4E-11 1.5E-15 82.0 6.2 82 7-89 2-111 (368)
192 1u0l_A Probable GTPase ENGC; p 99.1 2.1E-12 7.2E-17 86.3 -1.8 79 21-105 32-112 (301)
193 2qnr_A Septin-2, protein NEDD5 99.1 7.4E-12 2.5E-16 83.7 0.1 60 5-64 17-86 (301)
194 1zcb_A G alpha I/13; GTP-bindi 99.1 1.3E-09 4.6E-14 74.5 9.6 84 17-104 158-260 (362)
195 2x2e_A Dynamin-1; nitration, h 98.9 2.7E-10 9.3E-15 77.5 2.6 28 5-32 30-57 (353)
196 1udx_A The GTP-binding protein 98.9 1.3E-09 4.5E-14 75.8 5.9 92 8-103 159-259 (416)
197 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.1E-09 7.2E-14 74.2 6.2 85 5-89 19-127 (392)
198 4a9a_A Ribosome-interacting GT 98.9 5.6E-09 1.9E-13 71.8 8.1 85 6-92 72-164 (376)
199 3vqt_A RF-3, peptide chain rel 98.9 5.7E-10 2E-14 80.0 2.9 104 5-109 30-154 (548)
200 2hf9_A Probable hydrogenase ni 98.8 2.4E-11 8.1E-16 77.4 -7.4 36 5-40 37-72 (226)
201 4fn5_A EF-G 1, elongation fact 98.7 1.4E-08 4.8E-13 74.7 3.7 103 6-109 13-139 (709)
202 3cnl_A YLQF, putative uncharac 98.6 2.9E-08 9.9E-13 65.1 2.7 56 7-66 100-156 (262)
203 1puj_A YLQF, conserved hypothe 98.5 1.1E-07 3.8E-12 63.0 5.1 57 5-65 119-176 (282)
204 3j25_A Tetracycline resistance 98.5 1.1E-09 3.8E-14 79.7 -5.4 102 7-109 3-121 (638)
205 2wsm_A Hydrogenase expression/ 98.5 9.7E-08 3.3E-12 60.4 3.4 25 5-29 29-53 (221)
206 3p32_A Probable GTPase RV1496/ 98.4 5.2E-08 1.8E-12 66.3 1.9 40 54-96 172-211 (355)
207 2www_A Methylmalonic aciduria 98.4 1.6E-07 5.5E-12 63.9 2.9 23 6-28 74-96 (349)
208 2p67_A LAO/AO transport system 98.2 1.7E-07 5.7E-12 63.6 0.1 36 54-92 149-184 (341)
209 3zvr_A Dynamin-1; hydrolase, D 98.2 4.4E-06 1.5E-10 62.1 7.5 27 5-31 50-76 (772)
210 1f5n_A Interferon-induced guan 98.2 1.8E-06 6.1E-11 62.5 4.4 62 4-66 36-103 (592)
211 1bif_A 6-phosphofructo-2-kinas 98.0 7.1E-09 2.4E-13 72.9 -9.7 95 5-102 38-143 (469)
212 3ec1_A YQEH GTPase; atnos1, at 98.0 8.1E-06 2.8E-10 55.9 5.5 24 6-29 162-185 (369)
213 3h2y_A GTPase family protein; 98.0 1.1E-05 3.8E-10 55.2 5.4 24 6-29 160-183 (368)
214 3sop_A Neuronal-specific septi 97.9 6.3E-06 2.1E-10 54.2 3.0 24 6-29 2-25 (270)
215 1yrb_A ATP(GTP)binding protein 97.9 1.1E-05 3.6E-10 52.2 3.7 24 4-27 12-35 (262)
216 2qag_B Septin-6, protein NEDD5 97.8 6.1E-05 2.1E-09 52.6 7.0 26 6-31 42-67 (427)
217 3asz_A Uridine kinase; cytidin 97.8 1.2E-05 4.2E-10 50.4 3.1 28 1-28 1-28 (211)
218 1ye8_A Protein THEP1, hypothet 97.8 1.4E-05 4.7E-10 49.5 3.2 22 8-29 2-23 (178)
219 1kgd_A CASK, peripheral plasma 97.8 1.5E-05 5.2E-10 49.1 3.0 21 8-28 7-27 (180)
220 3ney_A 55 kDa erythrocyte memb 97.7 2.5E-05 8.4E-10 49.2 3.5 25 5-29 18-42 (197)
221 1lvg_A Guanylate kinase, GMP k 97.7 1.9E-05 6.6E-10 49.4 3.0 21 8-28 6-26 (198)
222 2j41_A Guanylate kinase; GMP, 97.7 2.4E-05 8E-10 48.7 3.4 29 1-29 1-29 (207)
223 4eun_A Thermoresistant glucoki 97.7 2.4E-05 8.2E-10 48.9 3.3 26 3-28 26-51 (200)
224 3tau_A Guanylate kinase, GMP k 97.7 2.9E-05 9.8E-10 48.9 3.7 22 8-29 10-31 (208)
225 3a00_A Guanylate kinase, GMP k 97.7 2.7E-05 9.2E-10 48.1 2.9 20 9-28 4-23 (186)
226 3tr0_A Guanylate kinase, GMP k 97.7 2.9E-05 1E-09 48.3 3.0 22 8-29 9-30 (205)
227 4gp7_A Metallophosphoesterase; 97.6 2.8E-05 9.4E-10 47.6 2.6 18 8-25 11-28 (171)
228 1ex7_A Guanylate kinase; subst 97.6 3.6E-05 1.2E-09 48.0 3.1 21 9-29 4-24 (186)
229 1knq_A Gluconate kinase; ALFA/ 97.6 6E-05 2E-09 45.9 4.0 24 5-28 7-30 (175)
230 1zp6_A Hypothetical protein AT 97.6 4.6E-05 1.6E-09 46.9 3.5 24 6-29 9-32 (191)
231 1s96_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 49.2 3.0 22 8-29 18-39 (219)
232 1znw_A Guanylate kinase, GMP k 97.6 3.7E-05 1.2E-09 48.3 3.0 22 8-29 22-43 (207)
233 1y63_A LMAJ004144AAA protein; 97.6 5.4E-05 1.8E-09 46.7 3.6 29 1-29 5-33 (184)
234 1qf9_A UMP/CMP kinase, protein 97.6 5.8E-05 2E-09 46.3 3.7 28 1-28 1-28 (194)
235 1z6g_A Guanylate kinase; struc 97.6 4E-05 1.4E-09 48.7 3.0 21 8-28 25-45 (218)
236 3c8u_A Fructokinase; YP_612366 97.5 6.3E-05 2.2E-09 47.2 3.3 23 5-27 21-43 (208)
237 2qor_A Guanylate kinase; phosp 97.5 6.1E-05 2.1E-09 47.1 3.1 22 7-28 13-34 (204)
238 1htw_A HI0065; nucleotide-bind 97.5 6.1E-05 2.1E-09 45.8 3.0 23 8-30 35-57 (158)
239 3kb2_A SPBC2 prophage-derived 97.5 7.2E-05 2.5E-09 45.1 3.0 21 8-28 3-23 (173)
240 1nn5_A Similar to deoxythymidy 97.5 7.4E-05 2.5E-09 46.7 3.0 28 1-28 4-31 (215)
241 3lw7_A Adenylate kinase relate 97.5 7.6E-05 2.6E-09 44.9 3.0 20 7-26 2-21 (179)
242 1kag_A SKI, shikimate kinase I 97.5 8E-05 2.7E-09 45.1 3.0 21 8-28 6-26 (173)
243 1ly1_A Polynucleotide kinase; 97.5 8.5E-05 2.9E-09 45.1 3.1 22 7-28 3-24 (181)
244 3tif_A Uncharacterized ABC tra 97.5 7.4E-05 2.5E-09 48.1 2.9 22 8-29 33-54 (235)
245 3fb4_A Adenylate kinase; psych 97.5 8.9E-05 3E-09 46.6 3.2 22 7-28 1-22 (216)
246 2bdt_A BH3686; alpha-beta prot 97.5 8.1E-05 2.8E-09 45.9 3.0 21 8-28 4-24 (189)
247 3dl0_A Adenylate kinase; phosp 97.4 9.1E-05 3.1E-09 46.6 3.2 22 7-28 1-22 (216)
248 2bbw_A Adenylate kinase 4, AK4 97.4 9.6E-05 3.3E-09 47.5 3.3 21 7-27 28-48 (246)
249 3sr0_A Adenylate kinase; phosp 97.4 0.00012 4E-09 46.4 3.2 22 7-28 1-22 (206)
250 3ec2_A DNA replication protein 97.4 9.6E-05 3.3E-09 45.2 2.7 22 7-28 39-60 (180)
251 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.6E-09 45.8 3.0 21 8-28 20-40 (202)
252 2ehv_A Hypothetical protein PH 97.4 0.00011 3.7E-09 46.9 3.1 20 8-27 32-51 (251)
253 3vaa_A Shikimate kinase, SK; s 97.4 0.00013 4.5E-09 45.4 3.3 22 7-28 26-47 (199)
254 2onk_A Molybdate/tungstate ABC 97.4 0.00011 3.9E-09 47.4 3.1 23 8-30 26-48 (240)
255 2pcj_A ABC transporter, lipopr 97.4 9.4E-05 3.2E-09 47.3 2.6 22 8-29 32-53 (224)
256 2jaq_A Deoxyguanosine kinase; 97.4 0.00013 4.5E-09 45.1 3.2 21 8-28 2-22 (205)
257 1b0u_A Histidine permease; ABC 97.4 0.00011 3.9E-09 48.0 3.0 22 8-29 34-55 (262)
258 1qhx_A CPT, protein (chloramph 97.4 0.00014 4.6E-09 44.3 3.1 21 8-28 5-25 (178)
259 1ukz_A Uridylate kinase; trans 97.3 0.00021 7.1E-09 44.4 4.0 23 5-27 14-36 (203)
260 2i3b_A HCR-ntpase, human cance 97.3 0.00011 3.8E-09 45.8 2.7 21 8-28 3-23 (189)
261 2cbz_A Multidrug resistance-as 97.3 0.00013 4.6E-09 47.0 3.2 22 8-29 33-54 (237)
262 2yv5_A YJEQ protein; hydrolase 97.3 0.00053 1.8E-08 45.6 6.1 40 64-104 66-106 (302)
263 2cdn_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 44.7 3.7 24 5-28 19-42 (201)
264 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.2E-09 48.2 3.0 23 8-30 36-58 (275)
265 3cm0_A Adenylate kinase; ATP-b 97.3 0.00019 6.4E-09 44.0 3.6 23 6-28 4-26 (186)
266 2rcn_A Probable GTPase ENGC; Y 97.3 0.00014 5E-09 49.7 3.3 23 8-30 217-239 (358)
267 2ff7_A Alpha-hemolysin translo 97.3 0.00014 4.8E-09 47.2 3.2 22 8-29 37-58 (247)
268 1sgw_A Putative ABC transporte 97.3 0.00013 4.6E-09 46.4 3.0 22 8-29 37-58 (214)
269 1mv5_A LMRA, multidrug resista 97.3 0.00015 5.1E-09 46.9 3.2 22 8-29 30-51 (243)
270 1nks_A Adenylate kinase; therm 97.3 0.00014 4.9E-09 44.5 3.0 21 8-28 3-23 (194)
271 1cke_A CK, MSSA, protein (cyti 97.3 0.00018 6.1E-09 45.4 3.5 22 7-28 6-27 (227)
272 3tlx_A Adenylate kinase 2; str 97.3 0.0002 6.9E-09 46.1 3.7 24 5-28 28-51 (243)
273 1g6h_A High-affinity branched- 97.3 0.00013 4.6E-09 47.5 2.9 23 8-30 35-57 (257)
274 2eyu_A Twitching motility prot 97.3 0.00015 5E-09 47.5 3.0 22 7-28 26-47 (261)
275 1aky_A Adenylate kinase; ATP:A 97.3 0.00018 6.2E-09 45.4 3.4 24 5-28 3-26 (220)
276 2v54_A DTMP kinase, thymidylat 97.3 0.00021 7.2E-09 44.3 3.6 24 6-29 4-27 (204)
277 4g1u_C Hemin import ATP-bindin 97.3 0.00014 4.9E-09 47.7 2.9 23 8-30 39-61 (266)
278 3uie_A Adenylyl-sulfate kinase 97.3 0.00013 4.4E-09 45.5 2.7 22 6-27 25-46 (200)
279 4a74_A DNA repair and recombin 97.3 0.00012 4.2E-09 46.1 2.6 22 8-29 27-48 (231)
280 1jbk_A CLPB protein; beta barr 97.3 0.00018 6.2E-09 43.6 3.3 23 7-29 44-66 (195)
281 2v9p_A Replication protein E1; 97.3 0.00016 5.3E-09 48.5 3.2 22 7-28 127-148 (305)
282 2olj_A Amino acid ABC transpor 97.3 0.00015 5E-09 47.6 3.0 22 8-29 52-73 (263)
283 2plr_A DTMP kinase, probable t 97.3 0.00023 7.9E-09 44.3 3.7 23 6-28 4-26 (213)
284 1lw7_A Transcriptional regulat 97.3 0.00015 5.3E-09 49.3 3.1 23 6-28 170-192 (365)
285 2pze_A Cystic fibrosis transme 97.3 0.00018 6E-09 46.1 3.2 22 8-29 36-57 (229)
286 1zcb_A G alpha I/13; GTP-bindi 97.3 0.00019 6.6E-09 49.1 3.6 24 4-27 31-54 (362)
287 1ji0_A ABC transporter; ATP bi 97.3 0.00015 5.2E-09 46.7 2.9 22 8-29 34-55 (240)
288 3q5d_A Atlastin-1; G protein, 97.3 0.0005 1.7E-08 48.3 5.7 24 5-28 66-89 (447)
289 1kht_A Adenylate kinase; phosp 97.3 0.00018 6.1E-09 44.1 3.1 22 7-28 4-25 (192)
290 1zd8_A GTP:AMP phosphotransfer 97.3 0.00016 5.4E-09 45.9 2.9 23 5-27 6-28 (227)
291 2zu0_C Probable ATP-dependent 97.3 0.00017 5.8E-09 47.3 3.1 22 8-29 48-69 (267)
292 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00017 5.8E-09 46.8 3.1 22 8-29 31-52 (250)
293 3trf_A Shikimate kinase, SK; a 97.3 0.0002 7E-09 43.8 3.3 22 7-28 6-27 (185)
294 1vpl_A ABC transporter, ATP-bi 97.3 0.00016 5.6E-09 47.1 3.0 22 8-29 43-64 (256)
295 1np6_A Molybdopterin-guanine d 97.3 0.00018 6.2E-09 44.3 3.0 21 8-28 8-28 (174)
296 2if2_A Dephospho-COA kinase; a 97.3 0.00016 5.5E-09 45.0 2.8 22 7-28 2-23 (204)
297 1uj2_A Uridine-cytidine kinase 97.3 0.00022 7.7E-09 46.0 3.6 27 2-28 18-44 (252)
298 2qi9_C Vitamin B12 import ATP- 97.3 0.00017 5.7E-09 46.9 3.0 22 8-29 28-49 (249)
299 2ixe_A Antigen peptide transpo 97.3 0.00018 6.2E-09 47.3 3.2 22 8-29 47-68 (271)
300 1e4v_A Adenylate kinase; trans 97.3 0.00016 5.6E-09 45.4 2.8 22 7-28 1-22 (214)
301 2ghi_A Transport protein; mult 97.3 0.00018 6.3E-09 46.9 3.2 22 8-29 48-69 (260)
302 2ihy_A ABC transporter, ATP-bi 97.3 0.00019 6.5E-09 47.4 3.2 23 8-30 49-71 (279)
303 1jjv_A Dephospho-COA kinase; P 97.3 0.00024 8.2E-09 44.3 3.5 22 7-28 3-24 (206)
304 3lnc_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 46.6 2.1 20 8-27 29-48 (231)
305 3l82_B F-box only protein 4; T 97.2 4.2E-05 1.4E-09 48.9 -0.1 32 61-92 109-140 (227)
306 3aez_A Pantothenate kinase; tr 97.2 0.00029 9.8E-09 47.3 3.9 25 4-28 88-112 (312)
307 1u0l_A Probable GTPase ENGC; p 97.2 0.00023 8E-09 47.3 3.5 23 8-30 171-193 (301)
308 2rhm_A Putative kinase; P-loop 97.2 0.00023 8E-09 43.6 3.3 23 6-28 5-27 (193)
309 3iij_A Coilin-interacting nucl 97.2 0.00024 8.2E-09 43.4 3.2 22 7-28 12-33 (180)
310 2yv5_A YJEQ protein; hydrolase 97.2 0.0002 6.9E-09 47.7 3.0 21 7-27 166-186 (302)
311 2yz2_A Putative ABC transporte 97.2 0.00019 6.6E-09 47.0 2.9 22 8-29 35-56 (266)
312 2nq2_C Hypothetical ABC transp 97.2 0.0002 6.7E-09 46.6 2.9 22 8-29 33-54 (253)
313 2pjz_A Hypothetical protein ST 97.2 0.00023 7.9E-09 46.6 3.2 23 8-30 32-54 (263)
314 1tev_A UMP-CMP kinase; ploop, 97.2 0.0003 1E-08 43.1 3.6 23 6-28 3-25 (196)
315 1gvn_B Zeta; postsegregational 97.2 0.00029 9.8E-09 46.6 3.6 24 5-28 32-55 (287)
316 3b85_A Phosphate starvation-in 97.2 0.00015 5.3E-09 45.8 2.2 22 8-29 24-45 (208)
317 1tq4_A IIGP1, interferon-induc 97.2 0.00024 8E-09 49.5 3.3 24 6-29 69-92 (413)
318 2qm8_A GTPase/ATPase; G protei 97.2 0.00029 9.9E-09 47.7 3.7 23 5-27 54-76 (337)
319 1ixz_A ATP-dependent metallopr 97.2 0.00023 7.8E-09 45.8 3.0 21 9-29 52-72 (254)
320 3be4_A Adenylate kinase; malar 97.2 0.00026 8.7E-09 44.7 3.1 24 5-28 4-27 (217)
321 3fvq_A Fe(3+) IONS import ATP- 97.2 0.0002 6.8E-09 49.0 2.7 23 8-30 32-54 (359)
322 1odf_A YGR205W, hypothetical 3 97.2 0.00037 1.3E-08 46.2 3.9 24 4-27 29-52 (290)
323 1rz3_A Hypothetical protein rb 97.2 0.00036 1.2E-08 43.6 3.6 24 5-28 21-44 (201)
324 2xb4_A Adenylate kinase; ATP-b 97.2 0.0003 1E-08 44.7 3.3 21 8-28 2-22 (223)
325 1vht_A Dephospho-COA kinase; s 97.2 0.00036 1.2E-08 43.9 3.6 23 6-28 4-26 (218)
326 2pt5_A Shikimate kinase, SK; a 97.2 0.00033 1.1E-08 42.2 3.3 21 8-28 2-22 (168)
327 2x8a_A Nuclear valosin-contain 97.2 0.00025 8.7E-09 46.5 3.0 20 9-28 47-66 (274)
328 1z47_A CYSA, putative ABC-tran 97.2 0.00025 8.7E-09 48.4 3.1 23 8-30 43-65 (355)
329 2f1r_A Molybdopterin-guanine d 97.2 0.00012 4.1E-09 45.0 1.3 21 8-28 4-24 (171)
330 2jeo_A Uridine-cytidine kinase 97.2 0.00035 1.2E-08 44.9 3.6 24 5-28 24-47 (245)
331 2it1_A 362AA long hypothetical 97.2 0.00027 9.2E-09 48.4 3.1 23 8-30 31-53 (362)
332 3tqc_A Pantothenate kinase; bi 97.2 0.00039 1.3E-08 46.9 3.9 23 5-27 91-113 (321)
333 2yyz_A Sugar ABC transporter, 97.1 0.00027 9.1E-09 48.4 3.1 23 8-30 31-53 (359)
334 2qt1_A Nicotinamide riboside k 97.1 0.00038 1.3E-08 43.4 3.6 25 5-29 20-44 (207)
335 1via_A Shikimate kinase; struc 97.1 0.00027 9.1E-09 43.0 2.8 21 8-28 6-26 (175)
336 3rlf_A Maltose/maltodextrin im 97.1 0.00028 9.6E-09 48.6 3.1 23 8-30 31-53 (381)
337 2wwf_A Thymidilate kinase, put 97.1 0.00036 1.2E-08 43.5 3.4 24 5-28 9-32 (212)
338 2p65_A Hypothetical protein PF 97.1 0.00022 7.6E-09 43.1 2.4 23 6-28 43-65 (187)
339 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0003 1E-08 44.2 3.0 21 8-28 25-45 (235)
340 1t9h_A YLOQ, probable GTPase E 97.1 7.9E-05 2.7E-09 49.9 0.3 24 7-30 174-197 (307)
341 1g29_1 MALK, maltose transport 97.1 0.00028 9.7E-09 48.4 3.1 23 8-30 31-53 (372)
342 1v43_A Sugar-binding transport 97.1 0.0003 1E-08 48.3 3.1 23 8-30 39-61 (372)
343 3nh6_A ATP-binding cassette SU 97.1 0.00022 7.4E-09 47.8 2.3 22 8-29 82-103 (306)
344 2yvu_A Probable adenylyl-sulfa 97.1 0.0005 1.7E-08 42.2 3.9 23 5-27 12-34 (186)
345 3umf_A Adenylate kinase; rossm 97.1 0.00034 1.2E-08 44.6 3.2 20 9-28 32-51 (217)
346 2z0h_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 43.1 3.0 21 8-28 2-22 (197)
347 2kjq_A DNAA-related protein; s 97.1 0.00018 6.3E-09 43.1 1.7 22 8-29 38-59 (149)
348 3bos_A Putative DNA replicatio 97.1 0.00037 1.3E-08 43.9 3.2 23 6-28 52-74 (242)
349 3tui_C Methionine import ATP-b 97.1 0.00034 1.2E-08 47.9 3.1 23 8-30 56-78 (366)
350 2c95_A Adenylate kinase 1; tra 97.1 0.00038 1.3E-08 42.8 3.1 23 6-28 9-31 (196)
351 2ze6_A Isopentenyl transferase 97.1 0.00035 1.2E-08 45.3 3.0 21 8-28 3-23 (253)
352 2bbs_A Cystic fibrosis transme 97.1 0.00031 1.1E-08 46.7 2.8 22 8-29 66-87 (290)
353 3d31_A Sulfate/molybdate ABC t 97.1 0.00025 8.4E-09 48.3 2.3 23 8-30 28-50 (348)
354 3jvv_A Twitching mobility prot 97.1 0.00033 1.1E-08 47.8 3.0 21 8-28 125-145 (356)
355 1iy2_A ATP-dependent metallopr 97.1 0.00036 1.2E-08 45.6 3.0 22 8-29 75-96 (278)
356 1in4_A RUVB, holliday junction 97.1 0.00034 1.2E-08 47.0 3.0 21 8-28 53-73 (334)
357 2pbr_A DTMP kinase, thymidylat 97.1 0.00043 1.5E-08 42.4 3.2 21 8-28 2-22 (195)
358 1rj9_A FTSY, signal recognitio 97.1 0.00035 1.2E-08 46.7 3.0 21 7-27 103-123 (304)
359 1ak2_A Adenylate kinase isoenz 97.1 0.00047 1.6E-08 44.0 3.5 23 6-28 16-38 (233)
360 1uf9_A TT1252 protein; P-loop, 97.1 0.00047 1.6E-08 42.6 3.4 25 5-29 7-31 (203)
361 1gtv_A TMK, thymidylate kinase 97.1 0.00013 4.4E-09 45.6 0.7 21 8-28 2-22 (214)
362 1zak_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 44.2 2.7 23 6-28 5-27 (222)
363 1xjc_A MOBB protein homolog; s 97.1 0.00042 1.4E-08 42.6 3.0 22 7-28 5-26 (169)
364 4e22_A Cytidylate kinase; P-lo 97.0 0.00055 1.9E-08 44.3 3.7 21 7-27 28-48 (252)
365 1lv7_A FTSH; alpha/beta domain 97.0 0.00046 1.6E-08 44.5 3.3 22 7-28 46-67 (257)
366 1sq5_A Pantothenate kinase; P- 97.0 0.00048 1.6E-08 45.9 3.4 24 5-28 79-102 (308)
367 1e6c_A Shikimate kinase; phosp 97.0 0.00045 1.5E-08 41.7 3.0 21 8-28 4-24 (173)
368 2p5t_B PEZT; postsegregational 97.0 0.00033 1.1E-08 45.3 2.5 24 5-28 31-54 (253)
369 2bwj_A Adenylate kinase 5; pho 97.0 0.00039 1.3E-08 42.8 2.7 23 6-28 12-34 (199)
370 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00045 1.5E-08 44.9 3.1 22 7-28 5-26 (260)
371 2vli_A Antibiotic resistance p 97.0 0.00031 1.1E-08 42.8 2.1 22 6-27 5-26 (183)
372 3b9q_A Chloroplast SRP recepto 97.0 0.00044 1.5E-08 46.1 3.0 22 7-28 101-122 (302)
373 3gd7_A Fusion complex of cysti 97.0 0.00038 1.3E-08 48.1 2.7 22 8-29 49-70 (390)
374 1n0w_A DNA repair protein RAD5 97.0 0.00047 1.6E-08 43.7 3.0 22 8-29 26-47 (243)
375 1njg_A DNA polymerase III subu 97.0 0.00047 1.6E-08 43.1 3.0 21 8-28 47-67 (250)
376 2cvh_A DNA repair and recombin 97.0 0.00049 1.7E-08 43.0 3.0 21 8-28 22-42 (220)
377 2chg_A Replication factor C sm 97.0 0.00047 1.6E-08 42.7 3.0 21 8-28 40-60 (226)
378 2w58_A DNAI, primosome compone 97.0 0.00055 1.9E-08 42.4 3.2 23 7-29 55-77 (202)
379 3e70_C DPA, signal recognition 97.0 0.00046 1.6E-08 46.6 3.0 24 5-28 128-151 (328)
380 2ewv_A Twitching motility prot 97.0 0.00045 1.6E-08 47.3 2.9 22 7-28 137-158 (372)
381 1oxx_K GLCV, glucose, ABC tran 97.0 0.00025 8.5E-09 48.4 1.6 23 8-30 33-55 (353)
382 1cr0_A DNA primase/helicase; R 97.0 0.00042 1.4E-08 45.6 2.6 21 8-28 37-57 (296)
383 2iyv_A Shikimate kinase, SK; t 97.0 0.00057 2E-08 41.8 3.0 21 8-28 4-24 (184)
384 2gza_A Type IV secretion syste 96.9 0.00044 1.5E-08 47.2 2.7 23 7-29 176-198 (361)
385 2vp4_A Deoxynucleoside kinase; 96.9 0.00062 2.1E-08 43.4 3.2 25 5-29 19-43 (230)
386 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00047 1.6E-08 46.5 2.6 23 8-30 173-195 (330)
387 3szr_A Interferon-induced GTP- 96.9 0.00035 1.2E-08 50.8 2.1 23 8-30 47-69 (608)
388 2pez_A Bifunctional 3'-phospho 96.9 0.00085 2.9E-08 40.9 3.6 23 6-28 5-27 (179)
389 1a7j_A Phosphoribulokinase; tr 96.9 0.00028 9.7E-09 46.8 1.4 27 1-28 1-27 (290)
390 4eaq_A DTMP kinase, thymidylat 96.9 0.001 3.4E-08 42.6 3.9 24 5-28 25-48 (229)
391 3h4m_A Proteasome-activating n 96.9 0.00068 2.3E-08 44.2 3.2 24 6-29 51-74 (285)
392 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00067 2.3E-08 43.5 3.0 22 7-28 40-61 (262)
393 2f6r_A COA synthase, bifunctio 96.9 0.00086 2.9E-08 44.1 3.6 23 5-27 74-96 (281)
394 3kta_A Chromosome segregation 96.9 0.00061 2.1E-08 41.6 2.7 21 8-28 28-48 (182)
395 1m7g_A Adenylylsulfate kinase; 96.9 0.00069 2.4E-08 42.5 3.0 22 6-27 25-46 (211)
396 3b9p_A CG5977-PA, isoform A; A 96.9 0.00074 2.5E-08 44.3 3.2 23 6-28 54-76 (297)
397 1p9r_A General secretion pathw 96.9 0.00063 2.2E-08 47.4 3.0 22 8-29 169-190 (418)
398 3syl_A Protein CBBX; photosynt 96.9 0.0008 2.7E-08 44.3 3.3 23 5-27 66-88 (309)
399 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00056 1.9E-08 48.2 2.6 22 8-29 140-161 (460)
400 1ltq_A Polynucleotide kinase; 96.8 0.00076 2.6E-08 44.4 3.1 22 7-28 3-24 (301)
401 3n70_A Transport activator; si 96.8 0.00085 2.9E-08 39.7 3.0 25 6-30 24-48 (145)
402 2og2_A Putative signal recogni 96.8 0.00075 2.6E-08 46.2 3.0 23 6-28 157-179 (359)
403 2yhs_A FTSY, cell division pro 96.8 0.00075 2.6E-08 48.0 3.0 23 6-28 293-315 (503)
404 1zuh_A Shikimate kinase; alpha 96.8 0.001 3.5E-08 40.1 3.2 21 8-28 9-29 (168)
405 4fcw_A Chaperone protein CLPB; 96.8 0.0012 4.2E-08 43.4 3.8 23 6-28 47-69 (311)
406 2obl_A ESCN; ATPase, hydrolase 96.8 0.00077 2.6E-08 45.8 2.9 23 8-30 73-95 (347)
407 1l8q_A Chromosomal replication 96.8 0.0008 2.7E-08 44.8 2.9 21 8-28 39-59 (324)
408 1azs_C GS-alpha; complex (lyas 96.8 0.00094 3.2E-08 46.3 3.2 30 4-33 38-70 (402)
409 3crm_A TRNA delta(2)-isopenten 96.8 0.0012 4E-08 44.6 3.6 21 8-28 7-27 (323)
410 1ofh_A ATP-dependent HSL prote 96.8 0.00092 3.1E-08 43.8 3.0 22 7-28 51-72 (310)
411 2oap_1 GSPE-2, type II secreti 96.8 0.00076 2.6E-08 48.1 2.8 23 8-30 262-284 (511)
412 3nwj_A ATSK2; P loop, shikimat 96.8 0.00093 3.2E-08 43.5 3.0 22 7-28 49-70 (250)
413 3r20_A Cytidylate kinase; stru 96.7 0.0012 4E-08 42.6 3.3 22 6-27 9-30 (233)
414 2dr3_A UPF0273 protein PH0284; 96.7 0.00087 3E-08 42.5 2.7 21 8-28 25-45 (247)
415 3t15_A Ribulose bisphosphate c 96.7 0.00095 3.3E-08 44.1 3.0 23 6-28 36-58 (293)
416 3cf0_A Transitional endoplasmi 96.7 0.00094 3.2E-08 44.2 2.9 23 7-29 50-72 (301)
417 2qby_A CDC6 homolog 1, cell di 96.7 0.00082 2.8E-08 45.2 2.6 22 7-28 46-67 (386)
418 1d2n_A N-ethylmaleimide-sensit 96.7 0.0015 5.3E-08 42.4 3.9 25 5-29 63-87 (272)
419 1fnn_A CDC6P, cell division co 96.7 0.0011 3.7E-08 44.8 3.0 22 8-29 46-67 (389)
420 1nlf_A Regulatory protein REPA 96.7 0.00096 3.3E-08 43.6 2.7 21 8-28 32-52 (279)
421 2dpy_A FLII, flagellum-specifi 96.7 0.001 3.5E-08 46.6 2.9 23 8-30 159-181 (438)
422 1svm_A Large T antigen; AAA+ f 96.7 0.0011 3.8E-08 45.6 3.0 23 6-28 169-191 (377)
423 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0013 4.6E-08 47.1 3.4 23 8-30 49-71 (538)
424 3euj_A Chromosome partition pr 96.6 0.0012 4E-08 46.9 3.0 21 8-28 31-51 (483)
425 3zvl_A Bifunctional polynucleo 96.6 0.0012 4.2E-08 45.8 3.1 23 6-28 258-280 (416)
426 1sxj_C Activator 1 40 kDa subu 96.6 0.0012 4E-08 44.3 2.9 21 9-29 49-69 (340)
427 1sxj_E Activator 1 40 kDa subu 96.6 0.00096 3.3E-08 44.7 2.4 20 9-28 39-58 (354)
428 3b60_A Lipid A export ATP-bind 96.6 0.0011 3.7E-08 47.9 2.8 22 8-29 371-392 (582)
429 2qen_A Walker-type ATPase; unk 96.6 0.0013 4.4E-08 43.7 3.0 22 8-29 33-54 (350)
430 3l2o_B F-box only protein 4; s 96.6 0.00012 4.2E-09 48.8 -1.9 33 61-93 194-226 (312)
431 1tue_A Replication protein E1; 96.6 0.001 3.5E-08 42.3 2.4 22 7-28 59-80 (212)
432 3b5x_A Lipid A export ATP-bind 96.6 0.0013 4.6E-08 47.4 3.3 22 8-29 371-392 (582)
433 1nij_A Hypothetical protein YJ 96.6 0.00076 2.6E-08 45.1 1.8 23 8-30 6-28 (318)
434 3eie_A Vacuolar protein sortin 96.6 0.0015 5.1E-08 43.6 3.2 24 6-29 51-74 (322)
435 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0016 5.5E-08 43.6 3.2 23 7-29 46-68 (322)
436 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0018 6.1E-08 38.7 3.1 19 9-27 26-44 (149)
437 3ake_A Cytidylate kinase; CMP 96.6 0.0022 7.4E-08 39.7 3.6 21 8-28 4-24 (208)
438 3d3q_A TRNA delta(2)-isopenten 96.6 0.0019 6.5E-08 43.9 3.5 22 7-28 8-29 (340)
439 1sxj_D Activator 1 41 kDa subu 96.6 0.0015 5.1E-08 43.7 3.0 21 9-29 61-81 (353)
440 3uk6_A RUVB-like 2; hexameric 96.6 0.0012 4.3E-08 44.4 2.6 22 7-28 71-92 (368)
441 2v1u_A Cell division control p 96.5 0.0012 4.2E-08 44.4 2.5 23 6-28 44-66 (387)
442 2fna_A Conserved hypothetical 96.5 0.0013 4.5E-08 43.7 2.6 22 8-29 32-53 (357)
443 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7.1E-08 41.0 3.4 24 5-28 15-38 (236)
444 1c9k_A COBU, adenosylcobinamid 96.5 0.0017 5.8E-08 40.3 2.8 21 9-29 2-22 (180)
445 3ld9_A DTMP kinase, thymidylat 96.5 0.0024 8.1E-08 40.9 3.6 26 2-27 17-42 (223)
446 3pfi_A Holliday junction ATP-d 96.5 0.0017 5.9E-08 43.3 3.0 23 7-29 56-78 (338)
447 3pxg_A Negative regulator of g 96.5 0.0015 5.2E-08 46.0 2.8 23 6-28 201-223 (468)
448 2r62_A Cell division protease 96.5 0.00068 2.3E-08 43.8 0.9 21 8-28 46-66 (268)
449 3ozx_A RNAse L inhibitor; ATP 96.5 0.0017 5.8E-08 46.6 3.0 22 8-29 27-48 (538)
450 2ga8_A Hypothetical 39.9 kDa p 96.5 0.003 1E-07 43.2 4.0 23 5-27 23-45 (359)
451 2bjv_A PSP operon transcriptio 96.5 0.002 6.7E-08 41.7 3.0 25 6-30 29-53 (265)
452 3gmt_A Adenylate kinase; ssgci 96.5 0.0023 8E-08 41.2 3.3 24 5-28 7-30 (230)
453 3j16_B RLI1P; ribosome recycli 96.5 0.0019 6.4E-08 47.1 3.1 22 8-29 105-126 (608)
454 2qmh_A HPR kinase/phosphorylas 96.5 0.0019 6.5E-08 40.8 2.8 25 6-30 34-58 (205)
455 2qgz_A Helicase loader, putati 96.5 0.0021 7.3E-08 42.8 3.2 23 6-28 152-174 (308)
456 2grj_A Dephospho-COA kinase; T 96.5 0.0027 9.1E-08 39.6 3.5 25 5-29 11-35 (192)
457 1um8_A ATP-dependent CLP prote 96.4 0.0019 6.6E-08 43.9 3.0 23 6-28 72-94 (376)
458 3co5_A Putative two-component 96.4 0.00089 3.1E-08 39.6 1.2 24 6-29 27-50 (143)
459 2yl4_A ATP-binding cassette SU 96.4 0.0012 4.1E-08 47.8 2.0 22 8-29 372-393 (595)
460 2r44_A Uncharacterized protein 96.4 0.0014 4.9E-08 43.6 2.3 21 8-28 48-68 (331)
461 3a8t_A Adenylate isopentenyltr 96.4 0.0023 7.9E-08 43.5 3.2 22 8-29 42-63 (339)
462 1pzn_A RAD51, DNA repair and r 96.4 0.0018 6E-08 44.0 2.7 22 8-29 133-154 (349)
463 4b4t_K 26S protease regulatory 96.4 0.0024 8.1E-08 44.7 3.3 22 7-28 207-228 (428)
464 2qp9_X Vacuolar protein sortin 96.4 0.0021 7.2E-08 43.6 3.0 22 8-29 86-107 (355)
465 3ozx_A RNAse L inhibitor; ATP 96.4 0.002 6.9E-08 46.2 3.0 23 8-30 296-318 (538)
466 2qby_B CDC6 homolog 3, cell di 96.4 0.0018 6.3E-08 43.7 2.6 21 8-28 47-67 (384)
467 3qf4_B Uncharacterized ABC tra 96.4 0.0014 4.9E-08 47.4 2.2 22 8-29 383-404 (598)
468 4a82_A Cystic fibrosis transme 96.4 0.0012 4.2E-08 47.6 1.8 21 8-28 369-389 (578)
469 3m6a_A ATP-dependent protease 96.4 0.0021 7E-08 46.1 2.9 21 8-28 110-130 (543)
470 1vma_A Cell division protein F 96.4 0.0023 8E-08 42.8 3.0 22 7-28 105-126 (306)
471 2px0_A Flagellar biosynthesis 96.4 0.0019 6.5E-08 42.9 2.6 21 7-27 106-126 (296)
472 1tf7_A KAIC; homohexamer, hexa 96.4 0.0018 6.3E-08 46.1 2.7 19 9-27 42-60 (525)
473 4b4t_M 26S protease regulatory 96.4 0.0025 8.7E-08 44.6 3.3 24 6-29 215-238 (434)
474 3d8b_A Fidgetin-like protein 1 96.4 0.0025 8.7E-08 43.2 3.2 24 6-29 117-140 (357)
475 3bk7_A ABC transporter ATP-bin 96.4 0.0024 8.1E-08 46.5 3.2 23 8-30 119-141 (607)
476 3hws_A ATP-dependent CLP prote 96.4 0.0024 8E-08 43.3 3.0 23 6-28 51-73 (363)
477 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0026 9E-08 45.6 3.4 23 8-30 314-336 (538)
478 3exa_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 42.9 3.2 22 8-29 5-26 (322)
479 2z4s_A Chromosomal replication 96.3 0.0022 7.6E-08 44.8 2.9 21 8-28 132-152 (440)
480 2zts_A Putative uncharacterize 96.3 0.0028 9.5E-08 40.2 3.1 20 8-27 32-51 (251)
481 4b4t_L 26S protease subunit RP 96.3 0.0028 9.6E-08 44.4 3.3 23 6-28 215-237 (437)
482 1p5z_B DCK, deoxycytidine kina 96.3 0.0019 6.5E-08 41.8 2.3 23 6-28 24-46 (263)
483 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0027 9.1E-08 43.4 3.1 19 9-27 26-44 (365)
484 3qf4_A ABC transporter, ATP-bi 96.3 0.0017 5.9E-08 46.9 2.3 22 8-29 371-392 (587)
485 3bk7_A ABC transporter ATP-bin 96.3 0.0026 8.7E-08 46.3 3.1 23 8-30 384-406 (607)
486 3lda_A DNA repair protein RAD5 96.3 0.0022 7.6E-08 44.4 2.7 20 8-27 180-199 (400)
487 2r8r_A Sensor protein; KDPD, P 96.3 0.0045 1.5E-07 39.8 3.8 23 4-26 4-26 (228)
488 3vfd_A Spastin; ATPase, microt 96.3 0.0031 1.1E-07 43.1 3.2 23 7-29 149-171 (389)
489 3pvs_A Replication-associated 96.3 0.0027 9.3E-08 44.5 3.0 22 8-29 52-73 (447)
490 2j37_W Signal recognition part 96.2 0.0038 1.3E-07 44.5 3.7 23 5-27 100-122 (504)
491 3tqf_A HPR(Ser) kinase; transf 96.2 0.0033 1.1E-07 39.0 2.9 25 6-30 16-40 (181)
492 2ce7_A Cell division protein F 96.2 0.0029 9.9E-08 44.8 3.0 21 8-28 51-71 (476)
493 3foz_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 42.3 3.1 22 7-28 11-32 (316)
494 3j16_B RLI1P; ribosome recycli 96.2 0.0031 1E-07 46.0 3.1 22 9-30 381-402 (608)
495 4edh_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 39.8 3.0 22 6-27 6-27 (213)
496 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0029 9.9E-08 45.1 2.9 22 8-29 66-87 (499)
497 2ocp_A DGK, deoxyguanosine kin 96.2 0.0038 1.3E-07 39.8 3.3 22 7-28 3-24 (241)
498 2iw3_A Elongation factor 3A; a 96.2 0.0037 1.3E-07 47.9 3.6 24 8-31 463-486 (986)
499 1hqc_A RUVB; extended AAA-ATPa 96.2 0.0018 6.1E-08 42.8 1.7 22 7-28 39-60 (324)
500 4b4t_J 26S protease regulatory 96.2 0.0032 1.1E-07 43.7 3.0 23 6-28 182-204 (405)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=1.8e-30 Score=166.85 Aligned_cols=102 Identities=26% Similarity=0.471 Sum_probs=84.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+++||+|+|++|||||||++||+.+.|...+.||.+..+ .+.+..++..+.++|||++|+++|..+++.|++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4679999999999999999999999999999999997655 557778899999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++++||+++ ..|+..+..
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~ 113 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRT 113 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEeecchhHHHHHH-HHHHHHHHH
Confidence 99999999999999 888877654
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=4.2e-27 Score=149.64 Aligned_cols=107 Identities=81% Similarity=1.259 Sum_probs=96.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|+..+.+||+++|++|||||||+++|..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 77788999999999999999999999999998888888887777777788888999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhcccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|+|||++++++|+++...|++.+...
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~ 110 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRF 110 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999966999887653
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=2.2e-26 Score=144.57 Aligned_cols=105 Identities=46% Similarity=0.801 Sum_probs=96.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 34679999999999999999999999999888889998888878888999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||++++++|+++...|++.+...
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~ 124 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY 124 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999878999877644
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=1.6e-26 Score=147.77 Aligned_cols=104 Identities=35% Similarity=0.577 Sum_probs=92.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||+++|..+.+...+.++.+..+...+.+++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 46899999999999999999999999999888999988887777788888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||+++++||+++...|++.+...
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~ 128 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDY 128 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999559999877654
No 5
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=2.1e-26 Score=143.66 Aligned_cols=104 Identities=36% Similarity=0.648 Sum_probs=93.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+...+||+++|++|||||||++++..+.+...+.|+.+..+...+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45789999999999999999999999999888889888877777778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++++||+++...|++.+..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~ 107 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQE 107 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999997799877654
No 6
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.94 E-value=4.1e-26 Score=141.60 Aligned_cols=104 Identities=29% Similarity=0.450 Sum_probs=95.4
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|++.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 77888999999999999999999999999998888899988887778889999999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhcccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+++|||++++++|+.+ ..|+..+.
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~ 104 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLL 104 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999999 77877653
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.9e-26 Score=144.69 Aligned_cols=105 Identities=52% Similarity=0.940 Sum_probs=95.1
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999999888888888777777778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||+++++||+++...|++.+...
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY 119 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999966998877653
No 8
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=143.37 Aligned_cols=105 Identities=52% Similarity=0.904 Sum_probs=86.6
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45689999999999999999999999998888888888777777788899999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||++++++|+++...|++.+...
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~ 121 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCH 121 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999966898876653
No 9
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=5.9e-26 Score=144.39 Aligned_cols=103 Identities=36% Similarity=0.655 Sum_probs=93.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||+++|..+.+...+.++.+..+...+.+++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888898888777677778888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++...|++.+..
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~ 128 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQE 128 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999997799887654
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=142.26 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=88.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
+.+.+||+++|++|||||||+++|+++.+...+.++.+..+...+.+++..+.+.+||++|++++..+ ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45689999999999999999999999999888889998887777778899999999999999998875 67899999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||+++++||+++ ..|+..+..
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~ 119 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLAL 119 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 789887654
No 11
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=6.1e-27 Score=145.22 Aligned_cols=106 Identities=90% Similarity=1.317 Sum_probs=77.2
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|++.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+++||++|++++..++..+++.+|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999988888888876665545566778889999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++|||++++++|+++...|++.+..
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~ 108 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKH 108 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999996689987765
No 12
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=2.4e-25 Score=138.27 Aligned_cols=103 Identities=67% Similarity=1.113 Sum_probs=94.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999998888888887777777889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++...|+..+..
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~ 105 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRH 105 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEECCChhhHHHHHHHHHHHHHH
Confidence 99999999999996689887765
No 13
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=5.4e-26 Score=140.74 Aligned_cols=95 Identities=22% Similarity=0.363 Sum_probs=84.8
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|...+.+||+++|++|||||||+++|.++.+.. +.|+.+..+...+.+++..+.+++||++|+++ ..+++.+|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 777889999999999999999999999999876 67888877777788899999999999999976 467889999
Q ss_pred EEEEEECCChhHHHHHHhchhc
Q 033852 81 FILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~ 102 (110)
+|+|||+++++||+++ ..|+.
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~ 96 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHG 96 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHH
T ss_pred EEEEEECcCHHHHHHH-HHHHH
Confidence 9999999999999999 67543
No 14
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=141.50 Aligned_cols=105 Identities=29% Similarity=0.437 Sum_probs=89.3
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|+..+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 55677999999999999999999999999999888888888776666677778899999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|+|||++++++|+.+ ..|+..+..
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~ 123 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHE 123 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999 788877644
No 15
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=142.59 Aligned_cols=102 Identities=43% Similarity=0.818 Sum_probs=73.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||++|++++..++..+++.+|++|+|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 57999999999999999999999999888888888777777788899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||+++++||+++...|++.+..
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~ 134 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNH 134 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHH
Confidence 9999999999996689887654
No 16
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=4.5e-25 Score=139.93 Aligned_cols=104 Identities=66% Similarity=1.114 Sum_probs=92.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999998888888888777778888899999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||++++++|+++...|+..+...
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~ 131 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHH 131 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999966999877653
No 17
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=3.6e-25 Score=138.50 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=86.7
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+.+||+++|++|||||||+++++.+.+...+.++. ..+...+.+++..+.+.+||++|++++. +++.+|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4578999999999999999999999999988888874 4556778889999999999999998876 788999999
Q ss_pred EEEECCChhHHHHHHhchhcccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
+|||+++++||+++ ..|++.+...
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~ 114 (184)
T 3ihw_A 91 FVFSLEDEISFQTV-YNYFLRLCSF 114 (184)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHh
Confidence 99999999999999 7798877543
No 18
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=7e-25 Score=138.61 Aligned_cols=103 Identities=52% Similarity=0.853 Sum_probs=93.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35789999999999999999999999998888888877776667788888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++...|++.+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~ 125 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKH 125 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999997789887654
No 19
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.7e-25 Score=139.24 Aligned_cols=103 Identities=52% Similarity=0.854 Sum_probs=87.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
...+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999999998888888877776667788889999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++...|+..+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~ 125 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKH 125 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999997789887654
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=6.7e-25 Score=136.33 Aligned_cols=101 Identities=34% Similarity=0.549 Sum_probs=92.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+......++..+.+.+||++|++++..++..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 36899999999999999999999999998888898888877778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||+++++||+++ ..|+..+.
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~ 116 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLIL 116 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999 77877653
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=1.3e-24 Score=133.26 Aligned_cols=103 Identities=32% Similarity=0.580 Sum_probs=84.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 457899999999999999999999999988887888876653 4667788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
++|||++++++|+.+ ..|++.+..
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~ 106 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRK 106 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 788876543
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=133.30 Aligned_cols=104 Identities=32% Similarity=0.584 Sum_probs=89.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999999998888788886655 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhcccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
++|||++++++|+.+ ..|+..+...
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~ 110 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQN 110 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 999999999999999 7898776543
No 23
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.92 E-value=1.6e-24 Score=137.14 Aligned_cols=105 Identities=31% Similarity=0.627 Sum_probs=91.7
Q ss_pred CC--CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccC
Q 033852 1 MS--ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG 77 (110)
Q Consensus 1 m~--~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 77 (110)
|+ ....+||+|+|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55 34679999999999999999999999999888888887665 4467788888999999999999999999999999
Q ss_pred CcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 78 ADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|++|+|||++++++|+.+ ..|+..+..
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~ 108 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDR 108 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999 779877643
No 24
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.2e-25 Score=138.58 Aligned_cols=102 Identities=29% Similarity=0.546 Sum_probs=91.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+++||++|++++..++..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999999888888886555 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~ 126 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQ 126 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 889877643
No 25
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=5.2e-25 Score=134.59 Aligned_cols=100 Identities=27% Similarity=0.517 Sum_probs=90.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888887777777888889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||+++++||+++ ..|+..+.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~ 101 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQIL 101 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHH
T ss_pred EECCCHHHHHHH-HHHHHHHH
Confidence 999999999999 67776554
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=1.3e-24 Score=134.39 Aligned_cols=100 Identities=35% Similarity=0.598 Sum_probs=91.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999998888888888777777888888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 87 v~d~~~~~s~~~~-~~~~~~~ 106 (181)
T 2fn4_A 87 VFAINDRQSFNEV-GKLFTQI 106 (181)
T ss_dssp EEETTCHHHHHHH-HHHHHHH
T ss_pred EEeCCCHHHHHHH-HHHHHHH
Confidence 9999999999999 7787665
No 27
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=1.1e-24 Score=136.75 Aligned_cols=105 Identities=30% Similarity=0.513 Sum_probs=90.5
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeE--------------------------
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST-------------------------- 53 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------- 53 (110)
|..++.+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7788899999999999999999999999999888888876555 3345555544
Q ss_pred -----------EEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 54 -----------~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+.+.+||++|++++..++..+++.+|++|+|||++++.+|+.+ ..|+..+..
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~ 144 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKI 144 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHh
Confidence 8899999999999999999999999999999999999999999 788876654
No 28
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-24 Score=138.94 Aligned_cols=103 Identities=30% Similarity=0.513 Sum_probs=85.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 34579999999999999999999999999888778877655 34677888889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+|||++++.+|+.+ ..|+..+..
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~ 113 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRE 113 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHH
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 789877654
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.92 E-value=5.2e-25 Score=136.81 Aligned_cols=102 Identities=28% Similarity=0.616 Sum_probs=67.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999988877778877655 446777888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~ 108 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEE 108 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 779877654
No 30
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.8e-25 Score=138.33 Aligned_cols=104 Identities=27% Similarity=0.433 Sum_probs=90.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
|...+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|+++ ..++..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999988888888887777778889999999999999988 7778888999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++|||++++++|+++ ..|+..+..
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~ 126 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDE 126 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999 778766543
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.1e-24 Score=131.32 Aligned_cols=101 Identities=30% Similarity=0.543 Sum_probs=90.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998888788887665 4467778888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++ ..|+..+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~ 103 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHE 103 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEecCChHHHHHH-HHHHHHHHH
Confidence 9999999999999 778876643
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=1.7e-24 Score=132.45 Aligned_cols=103 Identities=36% Similarity=0.586 Sum_probs=90.3
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
.++.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999998888888876554 45677788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
++|||++++++|+++ ..|+..+..
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~ 105 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVA 105 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 778876643
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=3e-24 Score=131.37 Aligned_cols=103 Identities=30% Similarity=0.523 Sum_probs=90.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
+.+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999998887778876665 44677788899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
++|||++++++|+++ ..|+..+..
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~ 106 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQR 106 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 788876543
No 34
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=6.4e-24 Score=132.80 Aligned_cols=102 Identities=30% Similarity=0.538 Sum_probs=90.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4579999999999999999999999999888788877665 346667888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+.+ ..|+..+..
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~ 122 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKT 122 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 779877654
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=2.6e-24 Score=133.90 Aligned_cols=102 Identities=33% Similarity=0.517 Sum_probs=89.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999998888888877777778889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+.+ ..|+..+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~ 103 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKR 103 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 778766543
No 36
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.91 E-value=1.2e-24 Score=132.83 Aligned_cols=101 Identities=32% Similarity=0.566 Sum_probs=88.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999999888888888877777778889999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||++++++|+.+ ..|+..+..
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~ 103 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILR 103 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHH
T ss_pred EECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999 788776544
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=2.2e-24 Score=135.23 Aligned_cols=102 Identities=28% Similarity=0.561 Sum_probs=86.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999999998887777776555 446777888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~ 121 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQ 121 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 778877654
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=4e-24 Score=131.95 Aligned_cols=101 Identities=36% Similarity=0.613 Sum_probs=87.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4789999999999999999999999998888788887665 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|||++++++|+++ ..|++.+.
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~~~ 106 (177)
T 1wms_A 85 LTFSVDDSQSFQNL-SNWKKEFI 106 (177)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHH
Confidence 99999999999999 88887664
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=3.4e-24 Score=133.35 Aligned_cols=101 Identities=29% Similarity=0.537 Sum_probs=90.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999999888788877655 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|||++++++|+++ ..|+..+.
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~ 109 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDAR 109 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHH
Confidence 99999999999999 78876654
No 40
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=5.7e-24 Score=130.29 Aligned_cols=103 Identities=25% Similarity=0.498 Sum_probs=91.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++....+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 34679999999999999999999999998888888887665 44677788889999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
++|||++++.+|+++ ..|++.+..
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~ 106 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQ 106 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 888877654
No 41
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=138.67 Aligned_cols=102 Identities=30% Similarity=0.520 Sum_probs=83.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4579999999999999999999999999888788876555 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~ 129 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRK 129 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 789877654
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=5.2e-25 Score=136.08 Aligned_cols=103 Identities=27% Similarity=0.447 Sum_probs=89.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEECC-eEEEEEEEecCCccccccCCcccccCCcE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
..+.+||+++|++|||||||++++.++.+...+.|+.+.. +...+..++ ..+.+.+||++|++++..++..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4578999999999999999999999998877767777543 355666765 67899999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+++|||++++++|+++ ..|+..+..
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~ 107 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKK 107 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999 789877654
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=5e-24 Score=131.94 Aligned_cols=102 Identities=34% Similarity=0.542 Sum_probs=90.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4679999999999999999999999998887777776555 446677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++.+|+.+ ..|+..+..
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~ 112 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQA 112 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 788876654
No 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=133.39 Aligned_cols=102 Identities=31% Similarity=0.644 Sum_probs=91.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 3578999999999999999999999999888888886655 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~ 116 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDR 116 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 778876644
No 45
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=7.4e-24 Score=133.70 Aligned_cols=102 Identities=29% Similarity=0.537 Sum_probs=91.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4679999999999999999999999999888788887655 446677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+.+ ..|+..+..
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~ 108 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKT 108 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 779877654
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=135.91 Aligned_cols=102 Identities=31% Similarity=0.553 Sum_probs=92.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 35789999999999999999999999998888888888777777888988999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+.+ ..|+..+..
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~ 113 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILR 113 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 888876654
No 47
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=7.6e-24 Score=132.73 Aligned_cols=102 Identities=31% Similarity=0.506 Sum_probs=90.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999999887778876655 446677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++.+|+.+ ..|+..+..
T Consensus 103 ~v~D~~~~~s~~~~-~~~l~~i~~ 125 (193)
T 2oil_A 103 LVFDLTKHQTYAVV-ERWLKELYD 125 (193)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999998 788876643
No 48
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=1.1e-23 Score=131.63 Aligned_cols=102 Identities=32% Similarity=0.506 Sum_probs=81.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 35799999999999999999999999988887888877777777888889999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++ ..|+..+..
T Consensus 99 v~d~~~~~s~~~~-~~~~~~i~~ 120 (190)
T 3con_A 99 VFAINNSKSFADI-NLYREQIKR 120 (190)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEECcCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 888876543
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=3.5e-24 Score=130.65 Aligned_cols=100 Identities=32% Similarity=0.568 Sum_probs=89.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999988888888777777788899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||++++++|+++ ..|+..+.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~ 101 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQII 101 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHH
T ss_pred EeCCCHHHHHHH-HHHHHHHH
Confidence 999999999999 66765543
No 50
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=6.7e-24 Score=132.74 Aligned_cols=101 Identities=31% Similarity=0.600 Sum_probs=91.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 579999999999999999999999999888888876655 4567788889999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++.+|+++ ..|+..+..
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~ 115 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELET 115 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 789877654
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=2.7e-24 Score=134.49 Aligned_cols=102 Identities=28% Similarity=0.560 Sum_probs=89.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccc-cCCcccccCCcEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 81 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~ 81 (110)
.+.+||+++|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++++. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4579999999999999999999999999888788876555 4467788888999999999999998 8889999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+|||+++++||+.+ ..|+..+..
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~ 121 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQ 121 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 778876644
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.4e-24 Score=133.60 Aligned_cols=102 Identities=26% Similarity=0.490 Sum_probs=91.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 46899999999999999999999999988787888876653 45667778899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~ 123 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKE 123 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHH
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 889877654
No 53
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=2.5e-24 Score=133.66 Aligned_cols=102 Identities=31% Similarity=0.553 Sum_probs=91.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999998888888887777777888888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+.+ ..|+..+..
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~ 117 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILR 117 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEECcCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 778776544
No 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-23 Score=130.17 Aligned_cols=103 Identities=33% Similarity=0.586 Sum_probs=81.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeEEE-EEEECCeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
..+.+||+++|++|||||||++++.++.+. ..+.++.+..+.. .+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356899999999999999999999999885 3566777666543 55778888999999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhccccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|+|||++++++|+++ ..|+..+..
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~ 111 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHE 111 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999 788876654
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=137.31 Aligned_cols=103 Identities=30% Similarity=0.486 Sum_probs=82.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45689999999999999999999999998877778877655 45677888899999999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+|||++++++|+++ ..|++.+..
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~ 128 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIED 128 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEECCChHHHHHH-HHHHHHHHH
Confidence 999999999999999 789876653
No 56
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.91 E-value=5e-24 Score=130.35 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=66.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++.+..+.. ..++.+..+...+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 36899999999999999999998766543 35566666666778899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||++++++|+++ ..|+..+.
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~ 99 (166)
T 3q72_A 80 YSVTDKGSFEKA-SELRVQLR 99 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHH
T ss_pred EECCCHHHHHHH-HHHHHHHH
Confidence 999999999999 77776554
No 57
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=4.7e-24 Score=131.63 Aligned_cols=102 Identities=28% Similarity=0.548 Sum_probs=90.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999998887778776555 446677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~ 115 (179)
T 1z0f_A 93 MVYDITRRSTYNHL-SSWLTDARN 115 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEeCcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 788876543
No 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=2.9e-24 Score=131.58 Aligned_cols=101 Identities=31% Similarity=0.648 Sum_probs=83.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998887778777555 4466677888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||++++++|+++ ..|+..+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~ 103 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNE 103 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999 788876643
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=1.6e-23 Score=132.27 Aligned_cols=101 Identities=31% Similarity=0.591 Sum_probs=89.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4689999999999999999999999998888888876554 446667788899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|||++++++|+++ ..|+..+.
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~ 107 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFL 107 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHH
Confidence 99999999999999 88887654
No 60
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=6.7e-25 Score=138.49 Aligned_cols=103 Identities=31% Similarity=0.380 Sum_probs=63.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeee-EEEEEEECCe--EEEEEEEecCCccccccCCcccccC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDN-FSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRG 77 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~ 77 (110)
....+||+++|++|||||||++++.++ .+...+.++.+.. ....+..++. .+.+.+||++|++++..++..+++.
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 356799999999999999999999998 7877777887643 3556677776 8899999999999999999999999
Q ss_pred CcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 78 ADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 78 ~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|++|+|||++++++|+.+ ..|+..+..
T Consensus 97 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~ 124 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESC-KAWFELLKS 124 (208)
T ss_dssp CCEEEEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred CcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999 789887754
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=1e-23 Score=130.06 Aligned_cols=100 Identities=30% Similarity=0.521 Sum_probs=89.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 579999999999999999999999999888788876554 5567788888999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||++++++|+.+ ..|+..+.
T Consensus 93 v~d~~~~~s~~~~-~~~~~~i~ 113 (179)
T 2y8e_A 93 VYDITNTNSFHQT-SKWIDDVR 113 (179)
T ss_dssp EEETTCHHHHHTH-HHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999 78887654
No 62
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=135.84 Aligned_cols=101 Identities=32% Similarity=0.556 Sum_probs=80.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999998887778776554 446677888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhcccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|||++++++|+++ ..|+..+.
T Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~ 124 (200)
T 2o52_A 103 LVYDITSRETYNSL-AAWLTDAR 124 (200)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHH
Confidence 99999999999999 78887654
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4e-24 Score=131.08 Aligned_cols=100 Identities=28% Similarity=0.530 Sum_probs=89.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999999888888888777777777888889999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccc
Q 033852 85 FSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~ 105 (110)
||++++++|+++ ..|+..+.
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~ 101 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQIC 101 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHH
T ss_pred EECcCHHHHHHH-HHHHHHHH
Confidence 999999999998 66765443
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=5e-24 Score=131.79 Aligned_cols=102 Identities=31% Similarity=0.604 Sum_probs=75.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEEC-CeEEEEEEEecCCccccccCCcccccCCcE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 80 (110)
..+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..+ +..+.+.+||++|++++..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34689999999999999999999999998888778776544 4455555 556889999999999999999999999999
Q ss_pred EEEEEECCChhHHHHHHhchhcccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|+|||++++.+|+++ ..|+..+.
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~ 108 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFL 108 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHH
T ss_pred EEEEEECCChHHHHHH-HHHHHHHH
Confidence 9999999999999999 88887654
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=135.08 Aligned_cols=102 Identities=28% Similarity=0.495 Sum_probs=83.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999998877777776554 456777888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++.+|+++ ..|+..+..
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~ 126 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDK 126 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 788876654
No 66
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3.9e-24 Score=134.30 Aligned_cols=103 Identities=30% Similarity=0.543 Sum_probs=89.9
Q ss_pred CC-CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCc
Q 033852 1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (110)
Q Consensus 1 m~-~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (110)
|+ +...+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 54 35789999999999999999999999999888888888777777778888999999999999999999999999999
Q ss_pred EEEEEEECCChhHHHHHHhchhccc
Q 033852 80 VFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 80 ~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
++++|||++++++|+++ ..|+..+
T Consensus 82 ~~i~v~d~~~~~s~~~~-~~~~~~i 105 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEEL-GPIYKLI 105 (199)
T ss_dssp EEEEEEETTCHHHHHTT-HHHHHHH
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHH
Confidence 99999999999999998 5565443
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=8.3e-24 Score=128.72 Aligned_cols=101 Identities=33% Similarity=0.512 Sum_probs=90.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999999888878888777777777888899999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||++++++++++ ..|+..+..
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~ 102 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKR 102 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHH
T ss_pred EECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999 888876544
No 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.7e-23 Score=132.63 Aligned_cols=102 Identities=31% Similarity=0.644 Sum_probs=89.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4579999999999999999999999998888788876555 446777888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++.+|+.+ ..|+..+..
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~ 120 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNE 120 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 788876654
No 69
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=1.9e-23 Score=130.24 Aligned_cols=102 Identities=33% Similarity=0.542 Sum_probs=88.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE--EEEEECCe---------EEEEEEEecCCccccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~d~~g~~~~~~~~~ 72 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+. ..+..++. .+.+.+||++|++++..++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999998888888876654 34555554 78999999999999999999
Q ss_pred ccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 73 LSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
.+++.+|++|+|||++++.+++++ ..|+..+..
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~ 121 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQM 121 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999 788876653
No 70
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=128.93 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=76.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc--cccCCcccccCCcEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~~ 81 (110)
.+.+||+++|++|||||||++++.++.+...+.+.....+...+..++..+.+.+||++|++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457899999999999999999999988765533322333455677888889999999999987 566777889999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
++|||+++++||+++ ..|+..+..
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~ 105 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRR 105 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 678765543
No 71
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=6.5e-23 Score=137.52 Aligned_cols=103 Identities=65% Similarity=1.115 Sum_probs=94.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~ 84 (110)
..+||+++|++|||||||+++++.+.+...+.++.+..+...+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988888888888877788899999999999999999999999999999999999
Q ss_pred EECCChhHHHHHHhchhcccccc
Q 033852 85 FSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 85 ~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
||++++.||+++...|++.+...
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~ 256 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHH 256 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999966898776653
No 72
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.90 E-value=8.2e-24 Score=134.80 Aligned_cols=102 Identities=38% Similarity=0.589 Sum_probs=88.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCe----------EEEEEEEecCCccccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGS----------TVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~i~d~~g~~~~~~~~~ 72 (110)
.+.+||+|+|++|||||||+++|..+.+...+.++.+..+. ..+..++. .+.+.+||++|++++..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 46799999999999999999999999988777777766553 35555554 78899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 73 LSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
.+++.+|++|+|||++++++|+++ ..|+..+..
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~ 135 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQA 135 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999 789887764
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=1.6e-23 Score=131.54 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=80.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+..||+|+|++|||||||+++|.++.+.. .+.++.+..... + +...+.+.+||++|++++..++..+++.+|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET-F--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE-E--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE-E--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 468899999999999999999999999988 778888754332 3 244577999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|||+++++||+++ ..|+..+
T Consensus 92 ~v~D~~~~~s~~~~-~~~~~~~ 112 (199)
T 4bas_A 92 FVVDSSDHLRLCVV-KSEIQAM 112 (199)
T ss_dssp EEEETTCGGGHHHH-HHHHHHH
T ss_pred EEEECCcHHHHHHH-HHHHHHH
Confidence 99999999999999 6666554
No 74
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=135.53 Aligned_cols=102 Identities=23% Similarity=0.339 Sum_probs=82.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeEEEEEEECCeEEEEEEEecCCcccccc-CCcccccCCcEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ 81 (110)
...+||+++|++|||||||+++|.+..+.....++. .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 457999999999999999999997654433334444 334455677889999999999999988765 777888999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+|||+++++||+++ ..|+..+..
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~ 124 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRA 124 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 788877643
No 75
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=4.1e-24 Score=136.73 Aligned_cols=102 Identities=29% Similarity=0.420 Sum_probs=90.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999998888777778886555 446677888999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~ 115 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVR 115 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 789887755
No 76
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.2e-25 Score=141.05 Aligned_cols=104 Identities=67% Similarity=1.128 Sum_probs=93.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+...+.++.+..+...+..++..+.+++||++|++++..++..+++.+|++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999999988887888877776666777888899999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWLL 107 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~~ 107 (110)
|||++++++|+++...|+..+...
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~ 131 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHH 131 (204)
Confidence 999999999999966899887654
No 77
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=1.7e-23 Score=128.25 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=72.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeEEEEEEECCeEEEEEEEecCCcccccc-CCcccccCCcEEEE
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 83 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~il 83 (110)
.+||+++|++|||||||++++.+..+.....++. ...+...+..++..+.+.+||++|++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999999877665544444 344456777899999999999999998876 77778899999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+.+ ..|+..+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~ 103 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRA 103 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEECCChHHHHHH-HHHHHHHHh
Confidence 9999999999999 788776654
No 78
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.9e-23 Score=131.80 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=80.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc-cccCCcccccCCcE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 80 (110)
...+||+++|++|||||||+++|++.. +...+.++..+.+.+.+.+++..+.+.+||++|++. +..+.+.+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999999643 344433333344566777899999999999999876 56677888999999
Q ss_pred EEEEEECCChhHHHHHHhchhcccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+|+|||+++++||+++ ..|+..+.
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~ 138 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLR 138 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999999 67876543
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=7.8e-24 Score=132.45 Aligned_cols=101 Identities=26% Similarity=0.323 Sum_probs=81.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCC-----------CceeeeEEE-EE-EECCeEEEEEEEecCCcccccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----------PTVFDNFSA-NV-VVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~-----------~~~~~~~~~-~~-~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
..+.+||+++|++|||||||+ +++.+.+...+. ++.+..+.. .+ ..++..+.+++||++|++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 356899999999999999999 455666665533 344444422 23 4567789999999999999999
Q ss_pred CCcccccCCcEEEEEEECC------ChhHHHHHHhchhcccc
Q 033852 70 LRPLSYRGADVFILAFSLI------SKASYENVAKKVFNCSW 105 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~------~~~s~~~~~~~w~~~~~ 105 (110)
++..+++.+|++|+|||++ +.++|+++ ..|+.++.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~ 130 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYG 130 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhc
Confidence 9999999999999999999 67888898 78988764
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.89 E-value=3.8e-24 Score=134.98 Aligned_cols=102 Identities=31% Similarity=0.644 Sum_probs=87.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999999998877777776555 456778888899999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~ 133 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDR 133 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 779877654
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.1e-24 Score=136.51 Aligned_cols=102 Identities=33% Similarity=0.548 Sum_probs=90.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4679999999999999999999999998888777776554 446667777889999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccccc
Q 033852 83 LAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|||++++++|+++ ..|+..+..
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~ 123 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKT 123 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHHHH
Confidence 99999999999999 779887754
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=2.1e-23 Score=130.55 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=83.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
++.+||+|+|++|||||||++++.++.+...+.++.+..+.. +.. ..+.+.+||++|++++..++..+++.+|++|+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 468999999999999999999999999987778888766543 333 34678999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~ 116 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNL 116 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHH
Confidence 9999999999999 6666544
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=3.1e-22 Score=125.58 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=80.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ +.+.+||++|+++++.++..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999998875 456666654 34455666 779999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||+++++||+++ ..|+..+
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~ 116 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDAL 116 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHH
T ss_pred EEECCChHHHHHH-HHHHHHH
Confidence 9999999999999 6776654
No 84
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=1.3e-22 Score=127.64 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=77.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccc-cccCCcccccCCcE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 80 (110)
...+||+++|++|||||||+++|++. .+...+.++..+.+.+.+.+++..+.+.+||+.|++. +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45789999999999999999999863 3444433333344566777899999999999999876 56677888899999
Q ss_pred EEEEEECCChhHHHHHHhchhcccc
Q 033852 81 FILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 81 ~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+++|||+++++||+++ ..|+..+.
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~ 107 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLR 107 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHH
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999999 77765443
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.88 E-value=1e-22 Score=128.60 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=74.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+. .+.|+.+.. ...+..++ +.+.+||++|+++++.++..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988874 456666554 23455666 679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||+++++||+++ ..|+..+.
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~ 119 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLM 119 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999 67776543
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.88 E-value=4.3e-22 Score=123.97 Aligned_cols=96 Identities=18% Similarity=0.325 Sum_probs=81.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++. ...+.|+.+... ..+..++ ..+++||++|++++...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999888 666678777443 3444443 678999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||+++++||+++ ..|+..+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~ 111 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSL 111 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHH
T ss_pred EEECcCHHHHHHH-HHHHHHH
Confidence 9999999999998 6666544
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=126.00 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=80.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
.+.+||+++|++|||||||++++.++. +...+.++.+.. ...+..++ +.+.+||++|++++..++..+++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999887 566667777643 33444554 67999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|||+++++||+++ ..|+..+
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~ 116 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTL 116 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHH
Confidence 99999999999999 6666544
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=127.00 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=78.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+. .+.|+.+... ..+..++ +.+.+||++|++++..++..+++.+|++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999998886 5567766432 3344554 679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccccc
Q 033852 84 AFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|||+++++||+++ ..|+..+..
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~ 111 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLA 111 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHh
Confidence 9999999999999 667765543
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.88 E-value=1.7e-23 Score=130.65 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=73.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeeEEE-EEEE---CCeEEEEEEEecCCccccccCCcccccCCc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSA-NVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 79 (110)
++|++++|++|||||||++++++. .+...+.++.+..+.. .+.. ++..+.+.+||++|++++..+++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 5656667777655532 3322 345678999999999999999999999999
Q ss_pred EEEEEEECCCh-hHHHHHHhchhccccc
Q 033852 80 VFILAFSLISK-ASYENVAKKVFNCSWL 106 (110)
Q Consensus 80 ~~il~~d~~~~-~s~~~~~~~w~~~~~~ 106 (110)
++++|||++++ .+|+++ ..|+..+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~ 108 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKA 108 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHH
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHh
Confidence 99999999997 589988 889887654
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=1.8e-22 Score=125.53 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=79.5
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||+++|.++.+ ..+.++.+... ..+..++ +.+.+||++|++++..++..+++.+|++|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999988 45566666443 3344554 679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~ 114 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKM 114 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHH
Confidence 9999999999999 5565544
No 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.88 E-value=7.2e-22 Score=124.58 Aligned_cols=100 Identities=35% Similarity=0.604 Sum_probs=85.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
...+|++++|++|||||||++++.+..+...+.|+.+..+ ...+.+++..+.+.+||++|++.++.++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999998887778776554 456778999999999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|||+++..+|+++ ..|+..+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~ 103 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKEL 103 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHH
T ss_pred EEEECcCHHHHHHH-HHHHHHH
Confidence 99999999999998 6787654
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=6.4e-23 Score=130.73 Aligned_cols=102 Identities=28% Similarity=0.400 Sum_probs=86.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEE-CCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
...+||+++|++|||||||+++++++.+...+.++.+..... .... ++..+.+.+||++|++++..++..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 367999999999999999999999999887777777655543 3333 34458899999999999999999999999999
Q ss_pred EEEEECCChhHHHHHHhchhccccc
Q 033852 82 ILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 82 il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
|+|||++++.+|+++ ..|+..+..
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~ 112 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQA 112 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999 789877654
No 93
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=8.7e-23 Score=124.58 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=77.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEE
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d 86 (110)
+||+++|++|||||||++++.++.+.. +.|+.+... ..+.. ..+.+.+||++|++++..++..+++.+|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE-EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE-EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999988864 467766332 23333 34679999999999999999999999999999999
Q ss_pred CCChhHHHHHHhchhccc
Q 033852 87 LISKASYENVAKKVFNCS 104 (110)
Q Consensus 87 ~~~~~s~~~~~~~w~~~~ 104 (110)
+++++||+++ ..|+..+
T Consensus 77 ~~~~~s~~~~-~~~~~~~ 93 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRM 93 (164)
T ss_dssp TTCGGGHHHH-HHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHH
Confidence 9999999999 6676554
No 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=1.1e-21 Score=120.24 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=79.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+.. +.|+.+... ..+..+ ...+.+||++|++++..++..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999988754 467665433 334444 4678999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~ 100 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAM 100 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHH
T ss_pred EEECCCHHHHHHH-HHHHHHH
Confidence 9999999999998 5565443
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.87 E-value=1.5e-21 Score=122.66 Aligned_cols=99 Identities=33% Similarity=0.577 Sum_probs=88.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
..++++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 468999999999999999999999999888888887665 4577889999999999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||+++..+|+++ ..|+..+
T Consensus 108 v~d~~~~~s~~~~-~~~~~~~ 127 (191)
T 1oix_A 108 VYDIAKHLTYENV-ERWLKEL 127 (191)
T ss_dssp EEETTCHHHHHTH-HHHHHHH
T ss_pred EEECcCHHHHHHH-HHHHHHH
Confidence 9999999999998 6787654
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=3.4e-22 Score=125.61 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=75.2
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
..+.+||+++|++|||||||+++++.+.+.. +.||.+.. ...+... .+.+.+||++|++++..++..+++.+|++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3578999999999999999999999888753 45655532 2233343 367999999999999999999999999999
Q ss_pred EEEECCChhHHHHHHhchhccc
Q 033852 83 LAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 83 l~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+|||++++++|+++ ..|+..+
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~ 122 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKM 122 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHH
T ss_pred EEEECCCHHHHHHH-HHHHHHH
Confidence 99999999999999 6776554
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=2.8e-22 Score=124.91 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=79.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++.++.+ ..+.|+.+.. ...+..+ .+.+.+||++|++.+..++..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999998865 3345665543 2344455 3679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~ 109 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTEL 109 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHH
T ss_pred EEECcCHHHHHHH-HHHHHHH
Confidence 9999999999999 6666544
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=7.8e-22 Score=123.18 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=79.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
++.+||+++|++|||||||++++..+.+.. +.|+.+... ..+..+ .+.+.+||++|++++..++..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL-ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE-EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999888754 466665332 234444 4679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~ 115 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYAL 115 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHH
T ss_pred EEeCCCHHHHHHH-HHHHHHH
Confidence 9999999999998 5665543
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=7e-22 Score=122.52 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=77.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+ ..+.++.+... ..+..++ ..+.+||++|++++...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV-ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE-EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998887 45566666432 3344444 679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcccc
Q 033852 84 AFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
|||++++++|+++ ..|+..+.
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~ 112 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLML 112 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHT
T ss_pred EEECCCHHHHHHH-HHHHHHHH
Confidence 9999999999999 66665543
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=7.3e-22 Score=124.30 Aligned_cols=98 Identities=16% Similarity=0.249 Sum_probs=73.5
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE---EEEEEE-CCeEEEEEEEecCCccccccCC---cccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF---SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSY 75 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~i~d~~g~~~~~~~~---~~~~ 75 (110)
..+.+||+++|++|||||||++++.+ .+... ++.+..+ .....+ ++..+.+++||++|+++|.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34689999999999999999997665 44333 2332222 112223 3566889999999999987776 7999
Q ss_pred cCCcEEEEEEECCCh--hHHHHHHhchhccc
Q 033852 76 RGADVFILAFSLISK--ASYENVAKKVFNCS 104 (110)
Q Consensus 76 ~~~~~~il~~d~~~~--~s~~~~~~~w~~~~ 104 (110)
+.+|++|+|||++++ ++++.+ ..|+...
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~ 123 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRL-HITVSKA 123 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHH-HHHHHHH
T ss_pred ccCCEEEEEEECCCchHHHHHHH-HHHHHHH
Confidence 999999999999998 788888 6887765
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=9.9e-22 Score=124.89 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=78.3
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCe-EEEEEEEecCCcccccc-CCcccccCCcE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ 80 (110)
..+.+||+++|++|||||||+++|+++.+...+.++...... +.+++. .+.+++||++|++++.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457899999999999999999999999988876654433322 445543 57899999999999987 78889999999
Q ss_pred EEEEEECCChh-HHHHHHhchhccc
Q 033852 81 FILAFSLISKA-SYENVAKKVFNCS 104 (110)
Q Consensus 81 ~il~~d~~~~~-s~~~~~~~w~~~~ 104 (110)
+|+|||+++.+ ++..+.+.|.+.+
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~ 106 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVL 106 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHH
Confidence 99999999964 5777766776543
No 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.84 E-value=3.1e-21 Score=129.33 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=77.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--CC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccc-----ccCCccccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~~~ 76 (110)
..+||+++|++|||||||++++.++. +. ..+.+|.+..+.. +..++ .+.+.+||++|++++ ..++..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~-~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH-LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE-EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE-EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 57899999999999999999998873 22 2345666665543 33433 578999999999988 788889999
Q ss_pred CCcEEEEEEECCChhHHHHHHhchhc
Q 033852 77 GADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
.+|++|+|||+++++||+++ ..|..
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~ 104 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAK 104 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHH
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHH
Confidence 99999999999999999999 66644
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=1.7e-21 Score=131.45 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc---CCcccccCCcEE
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~~ 81 (110)
|++++|++|||||||++++.++-+.. .+.||.+..+.. ++ ..+.++|||++||++|+. .++.|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999877654332 245677665543 22 347899999999999964 368899999999
Q ss_pred EEEEECCCh--hHHHHHHhchhccc
Q 033852 82 ILAFSLISK--ASYENVAKKVFNCS 104 (110)
Q Consensus 82 il~~d~~~~--~s~~~~~~~w~~~~ 104 (110)
|+|||++++ ++++.+ ..|++++
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~ 100 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYA 100 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHH
T ss_pred EEEEECCchHHHHHHHH-HHHHHHH
Confidence 999999998 334444 3445544
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=1.3e-19 Score=111.72 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=75.6
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 81 (110)
..+.++|+++|++|||||||++++.++.+...+.++....+ ...+..++. .+.+||++|++++..++..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35788999999999999999999999988776665553332 334555664 467999999999999999999999999
Q ss_pred EEEEECCC---hhHHHHH
Q 033852 82 ILAFSLIS---KASYENV 96 (110)
Q Consensus 82 il~~d~~~---~~s~~~~ 96 (110)
++|||+++ +++++.+
T Consensus 83 i~v~d~~~~~~~~~~~~l 100 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI 100 (178)
T ss_dssp EEEEETTCCCCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 99999998 6777766
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=6.6e-20 Score=129.44 Aligned_cols=96 Identities=22% Similarity=0.353 Sum_probs=80.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+++|++|||||||++++..+.+.. +.||.+..+.. +.. ..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET-VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE-EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE-EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 357999999999999999999999998654 46777665443 333 34679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhccc
Q 033852 84 AFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~~ 104 (110)
|||++++++|+++ ..|+..+
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~ 415 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRI 415 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHH
T ss_pred EEECcchhHHHHH-HHHHHHH
Confidence 9999999999999 5555444
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.3e-21 Score=128.40 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=73.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
.+.+||+|+|++|||||||+++|..+.+... .||.+..+. .+.. ..+.+.|||++|++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~-~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE-EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE-EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3578999999999999999999999887544 355544432 2333 34679999999999999999999999999999
Q ss_pred EEECCChhHHHHHHhchhcc
Q 033852 84 AFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 84 ~~d~~~~~s~~~~~~~w~~~ 103 (110)
|||++++++|+.+...|...
T Consensus 239 V~D~~~~~s~~~~~~~~~~~ 258 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRM 258 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHH
T ss_pred EEECCchHHHHHHHHHHHHH
Confidence 99999999999995455443
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.3e-21 Score=124.88 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=75.7
Q ss_pred CccceEEEEECCC---------CCcHHHHHHHHhc---CCCCCCCCCce-eeeEE-E--------------EEEECCeEE
Q 033852 3 ASRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNFS-A--------------NVVVDGSTV 54 (110)
Q Consensus 3 ~~~~~ki~vlG~~---------~~GKtsl~~~~~~---~~~~~~~~~~~-~~~~~-~--------------~~~~~~~~~ 54 (110)
..+.+||+++|++ |||||||+++|.. +.+...+.++. +..+. . ...+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3467999999999 9999999999999 56666666664 22211 1 112456778
Q ss_pred EEEEEe-----------------------cCCccccccCCccccc---------------------CCcEEEEEEECCCh
Q 033852 55 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK 90 (110)
Q Consensus 55 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~il~~d~~~~ 90 (110)
.++||| ++|+++|..++..+++ +||++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 7788888889999988 79999999999999
Q ss_pred --hHHHHHHhchhccccc
Q 033852 91 --ASYENVAKKVFNCSWL 106 (110)
Q Consensus 91 --~s~~~~~~~w~~~~~~ 106 (110)
+||+++ ..|+..+..
T Consensus 176 ~~~s~~~~-~~~l~~i~~ 192 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYN 192 (255)
T ss_dssp ---CHHHH-HHHHHHHHH
T ss_pred chhhHHHH-HHHHHHHHH
Confidence 999999 789877643
No 108
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.2e-20 Score=115.11 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=70.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccC----Cc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----AD 79 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~ 79 (110)
.+.++|+++|++|||||||++++.+..+... .++. ......+...+.+.+||++|++.+...+..+++. +|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQ----EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccC----CCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 4578999999999999999999999886542 1111 1111112234568999999999998888888876 89
Q ss_pred EEEEEEECC-ChhHHHHHHhchhccc
Q 033852 80 VFILAFSLI-SKASYENVAKKVFNCS 104 (110)
Q Consensus 80 ~~il~~d~~-~~~s~~~~~~~w~~~~ 104 (110)
++|+|||++ ++++|.++ ..|+..+
T Consensus 121 ~~i~v~d~~~~~~~~~~~-~~~~~~~ 145 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTT-AEFLVDI 145 (193)
T ss_dssp EEEEEEETTCCHHHHHHH-HHHHHHH
T ss_pred EEEEEEECCCCchhHHHH-HHHHHHH
Confidence 999999999 99999998 6666543
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=4.6e-20 Score=117.47 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=74.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccC---
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--- 77 (110)
.+.++|+++|++|||||||++++....+... +.++....+ ....+.+||++|++.++..+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999887552 333332222 34568999999999999888888887
Q ss_pred -CcEEEEEEECC-ChhHHHHHHhchhccc
Q 033852 78 -ADVFILAFSLI-SKASYENVAKKVFNCS 104 (110)
Q Consensus 78 -~~~~il~~d~~-~~~s~~~~~~~w~~~~ 104 (110)
+|++|+|||++ ++++|..+ ..|+..+
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~ 109 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDI 109 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHH
Confidence 89999999999 89999988 6666544
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=3.8e-18 Score=105.44 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=69.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCC--------cc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PL 73 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~ 73 (110)
++.+|++++|++|||||||++++.+..+. ..+.++....+...+..++.. +.+||++|++++.... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987642 222233333344556667644 7899999987543211 13
Q ss_pred cccCCcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 74 SYRGADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+++.+|++++|||++++.||+. ..|++.+.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~ 109 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP--AEIWPEFI 109 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH--HHHCHHHH
T ss_pred HHHhCCEEEEEEECCCCCCHHH--HHHHHHHH
Confidence 5789999999999999988763 35665543
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.73 E-value=3e-18 Score=122.12 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEE---------EECCeEEEEEEEecCCccccccCCc
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRP 72 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~d~~g~~~~~~~~~ 72 (110)
.....+||+++|++|||||||++++.++.+...+.++.+..+.... ..++..+.+.+||++|++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456899999999999999999999999998888888876654321 1123457899999999999999999
Q ss_pred ccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 73 LSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
.+++.+|++|+|||+++.+. + ..|+..+..
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~---~-~~~~~~l~~ 146 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN---K-HYWLRHIEK 146 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG---H-HHHHHHHHH
T ss_pred HHccCCcEEEEEEeCCCchh---H-HHHHHHHHH
Confidence 99999999999999987644 3 556655543
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=1.7e-18 Score=108.29 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=65.6
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE-EEEECCeEEEEEEEecCC----------ccccccC
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAG----------QEDYNRL 70 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~d~~g----------~~~~~~~ 70 (110)
+....++|+++|++|||||||++++.++.+...+.++.+..... ....++ .+.+||++| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 34567999999999999999999999988766555555433322 223333 489999999 6777777
Q ss_pred CcccccCC---cEEEEEEECCChhHHHHHH-hchhc
Q 033852 71 RPLSYRGA---DVFILAFSLISKASYENVA-KKVFN 102 (110)
Q Consensus 71 ~~~~~~~~---~~~il~~d~~~~~s~~~~~-~~w~~ 102 (110)
+..+++.+ |++++|+|++++.++.... ..|+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 131 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLK 131 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 77787766 9999999999988877651 24543
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=3.6e-17 Score=100.26 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=61.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-eEEEEEEECCeEEEEEEEecCCcccccc------CCccccc--
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-- 76 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~-- 76 (110)
.++++++|++|||||||++++.+..+.....|+... .....+..++ ..+.+||++|++++.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999987765444443322 2233344554 4689999999988753 3355665
Q ss_pred CCcEEEEEEECCChhHH
Q 033852 77 GADVFILAFSLISKASY 93 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~ 93 (110)
.++++++|+|+++.++.
T Consensus 81 ~~~~~i~v~D~~~~~~~ 97 (165)
T 2wji_A 81 KPDLVVNIVDATALERN 97 (165)
T ss_dssp CCSEEEEEEETTCHHHH
T ss_pred CCCEEEEEecCCchhHh
Confidence 89999999999986654
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=4e-19 Score=110.53 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=73.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCC-----------ccccccCCcccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~ 75 (110)
+||+++|++|||||||++++.++.+...+.|+..... ...... .+.+||++| ++.+..++..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988776666443221 122233 588999999 667777778888
Q ss_pred cC-CcEEEEEEECCChhHHHHHHhchhcc
Q 033852 76 RG-ADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 76 ~~-~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
+. +++++++|++.|..+|.++.+.|...
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~ 105 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKR 105 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHT
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhcc
Confidence 87 99999999999999999987888754
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=2.8e-17 Score=102.16 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=67.8
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-eEEEEEEECCeEEEEEEEecCCcccccc------CCcccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY 75 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~ 75 (110)
+.+.++++++|++|||||||++++.+..+.....|+... .....+..++ ..+.+||++|++.+.. +...++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 446799999999999999999999987654444444322 2233455554 6689999999988753 355556
Q ss_pred c--CCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 76 R--GADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 76 ~--~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
+ .++++++|+|.++.+ +. ..|+..+
T Consensus 82 ~~~~~~~~i~v~d~~~~~---~~-~~~~~~~ 108 (188)
T 2wjg_A 82 INEKPDLVVNIVDATALE---RN-LYLTLQL 108 (188)
T ss_dssp HHHCCSEEEEEEEGGGHH---HH-HHHHHHH
T ss_pred hccCCCEEEEEecchhHH---HH-HHHHHHH
Confidence 4 599999999988644 44 4455443
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=4.7e-17 Score=98.59 Aligned_cols=84 Identities=21% Similarity=0.150 Sum_probs=59.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccc-------ccCCcccccC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~ 77 (110)
.||+++|++|||||||++++.++.+. ....++........+..++. .+.+||++|+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988753 22222222333444555554 5889999998873 3344567889
Q ss_pred CcEEEEEEECCChhH
Q 033852 78 ADVFILAFSLISKAS 92 (110)
Q Consensus 78 ~~~~il~~d~~~~~s 92 (110)
+|++++|||++++.+
T Consensus 80 ~~~~i~v~d~~~~~~ 94 (161)
T 2dyk_A 80 AEVVLFAVDGRAELT 94 (161)
T ss_dssp CSEEEEEEESSSCCC
T ss_pred CCEEEEEEECCCccc
Confidence 999999999998644
No 117
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=3.6e-17 Score=105.00 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=65.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc-eeeeEEEEEEECCeEEEEEEEecCCccc----------cccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 72 (110)
...+||+|+|++|||||||+++|+++.+.....+. ............+ ..+.+||++|+.+ +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 46799999999999999999999998774222221 1111111222333 5689999999832 2112 2
Q ss_pred ccccCCcEEEEEEECCChhHHHHH-Hhchhccccc
Q 033852 73 LSYRGADVFILAFSLISKASYENV-AKKVFNCSWL 106 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~~~s~~~~-~~~w~~~~~~ 106 (110)
.++..+|++|+|||++++.+|+.. ...|+..+..
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~ 138 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS 138 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH
Confidence 346788999999999999887522 1356655543
No 118
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=6.5e-17 Score=106.10 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=66.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCccccc------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR------ 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~------ 76 (110)
+.++|+++|+.|+|||||++++.+..+. ..+.++........+..++. .+.+||+||++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5799999999999999999999988752 23233332223334444554 6899999999988766655554
Q ss_pred ---CCcEEEEEEECCChhHHHHHHhchhcc
Q 033852 77 ---GADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 77 ---~~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
.+|++++|+|++... +......|++.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~ 141 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIA 141 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHH
Confidence 789999999998754 43332344443
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.68 E-value=4.4e-17 Score=109.27 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=74.1
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeEEEEEEECCeEEEEEEEecCCccccc----------c
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------R 69 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~ 69 (110)
++.+.-.|+++|.+|||||||++++++..+... ...+...........+ ...++.+|||||..++. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 356778999999999999999999999886532 1122222222223333 14678999999986654 4
Q ss_pred CCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 70 LRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
....+++.+|++++|+|+++..+++.. ..|+..+..
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~ 120 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP 120 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh
Confidence 556678899999999999999888887 677766543
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=2.1e-16 Score=103.56 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=69.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeEEEEEEECCeEEEEEEEecCCcccccc----------CCcccc-
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY- 75 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~- 75 (110)
+|+++|.+|||||||++++.+..+.....|... ......+..++. .+.+||+||...+.. +...++
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 799999999999999999998865433333332 223334555554 689999999987764 455566
Q ss_pred -cCCcEEEEEEECCChhHHHHHHhchhcc
Q 033852 76 -RGADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 76 -~~~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
+.+|++|+|+|.++.+++..+ ..|+.+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l-~~~l~~ 108 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYL-TSQLFE 108 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHH-HHHHTT
T ss_pred hCCCCEEEEEeeCCCchhHHHH-HHHHHH
Confidence 889999999999999988887 555544
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=1e-15 Score=100.42 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=66.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeEEEEEEECCeEEEEEEEecCCccccccCC------cccc-
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY- 75 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~------~~~~- 75 (110)
.+.++|+++|++|||||||++++.+..+.....|... ......+...+ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998776433233221 11222333333 679999999998877643 5555
Q ss_pred -cCCcEEEEEEECCChhHHHHH
Q 033852 76 -RGADVFILAFSLISKASYENV 96 (110)
Q Consensus 76 -~~~~~~il~~d~~~~~s~~~~ 96 (110)
..+|++++|+|.++.++...+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~~ 102 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLYL 102 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHHH
T ss_pred hcCCCEEEEEeCCCchhhHHHH
Confidence 589999999999998775543
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.65 E-value=2.3e-16 Score=105.59 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCCc-cceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCC-ceeeeEEEEEEECCeEEEEEEEecCCccc--------ccc
Q 033852 1 MSAS-RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNR 69 (110)
Q Consensus 1 m~~~-~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~ 69 (110)
|++. +..+++++|.+|||||||++++++..+.. ...| +........... ...++.+|||||..+ +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHH
Confidence 5443 56789999999999999999999987743 2222 222222222222 246789999999876 334
Q ss_pred CCcccccCCcEEEEEEECCChhHHH
Q 033852 70 LRPLSYRGADVFILAFSLISKASYE 94 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s~~ 94 (110)
....+++.+|++++|||++++.+..
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~ 103 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPE 103 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHH
T ss_pred HHHHHHhcCCEEEEEEECCCCCChH
Confidence 4556789999999999999865443
No 123
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=7e-16 Score=100.76 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=60.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCc--eeeeEEEEEEECCeEEEEEEEecCCccccccCCcc-------
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL------- 73 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~------- 73 (110)
.+.++|+|+|++|||||||++++++.. +.....++ ........+..++ ..+.|||+||..++......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 357899999999999999999999876 54444443 2222233344444 45899999998766443322
Q ss_pred ----cccCCcEEEEEEECCCh
Q 033852 74 ----SYRGADVFILAFSLISK 90 (110)
Q Consensus 74 ----~~~~~~~~il~~d~~~~ 90 (110)
+++.+|++|+|||+++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~ 118 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRY 118 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCC
T ss_pred HHHhcCCCCcEEEEEEeCCCC
Confidence 67899999999999873
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=1.4e-16 Score=99.23 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=67.0
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEE-EEECCeEEEEEEEecCC----------ccccccCC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~d~~g----------~~~~~~~~ 71 (110)
....+||+++|++|||||||++++.++.+. ...++.+...... ...+. .+.+||++| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 456789999999999999999999998743 3344444333221 22222 377999999 66677777
Q ss_pred cccccCC---cEEEEEEECCChh--HHHHHHhchhcc
Q 033852 72 PLSYRGA---DVFILAFSLISKA--SYENVAKKVFNC 103 (110)
Q Consensus 72 ~~~~~~~---~~~il~~d~~~~~--s~~~~~~~w~~~ 103 (110)
..+++.+ +++++|+|.++.. ++..+ ..|+..
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~ 131 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMM-VEWMKS 131 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHH-HHHHHH
Confidence 7777665 9999999998763 34444 456654
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.63 E-value=4.7e-16 Score=109.60 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=51.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCC--------ccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 74 (110)
..++|+++|.+|||||||++++.+... ......+..+.....+..++ ..+.+|||+|+.++.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 468999999999999999999998753 22322333343444556666 458999999998765443 447
Q ss_pred ccCCcEEEEEEECCChhHHH
Q 033852 75 YRGADVFILAFSLISKASYE 94 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~ 94 (110)
++.+|++++|||.+++.+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~ 329 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDD 329 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGG
T ss_pred cccCCEEEEEEECCCCcchh
Confidence 88999999999999988874
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.62 E-value=5.5e-16 Score=102.46 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=63.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCcccccc------CCccccc-
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~- 76 (110)
..++|+++|++|||||||++++.+........| +... .+...+.. ...+.+||++|+..+.. +...|+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998764333223 2111 12223344 56789999999988763 4456665
Q ss_pred -CCcEEEEEEECCChhHHHHH
Q 033852 77 -GADVFILAFSLISKASYENV 96 (110)
Q Consensus 77 -~~~~~il~~d~~~~~s~~~~ 96 (110)
.+|++++|||+++.+++..+
T Consensus 79 ~~~d~vi~V~D~t~~e~~~~~ 99 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNLYL 99 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHHHH
T ss_pred CCCCEEEEEecCCchHhHHHH
Confidence 69999999999998776544
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.61 E-value=1.1e-15 Score=100.99 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=67.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeEEEEEEECCeEEEEEEEecCCccccccCC----------cc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------~~ 73 (110)
++++|+++|.+|||||||++++.+..+.....|.. -......+...+. .+.+||+||+..+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999887543333333 2222334444443 47899999998876432 22
Q ss_pred cc--cCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 74 SY--RGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 74 ~~--~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
|+ +.+|++|+|+|.++.++...+ ..|+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~-~~~l~ 109 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL-TLQLL 109 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH-HHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH-HHHHH
Confidence 22 689999999999998887776 44443
No 128
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.60 E-value=6.4e-16 Score=101.72 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=63.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcc---------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~--------- 73 (110)
..++|+++|.+|+|||||++++++..+.. ...++........+..+ ...+.+||+||..++..+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 57899999999999999999999887532 22222211112222233 356999999999877544331
Q ss_pred cccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 74 SYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
..+.+|++++|||++.. ++......|+..+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l 145 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAI 145 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHH
Confidence 13479999999999763 3444333555444
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=9.9e-16 Score=99.03 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=58.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce---eeeEEEEEEECCeEEEEEEEecCCcc-----------cccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQE-----------DYNR 69 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~~~~ 69 (110)
...++|+|+|++|||||||++++.+..+.....+.. .......+..++. .+.+||+||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence 457999999999999999999999988755544421 1222233445554 57899999943 3444
Q ss_pred CCcccccCCcEEEEEEECCCh
Q 033852 70 LRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~ 90 (110)
....+++.+|++|+|+|+++.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~ 125 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRY 125 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCC
T ss_pred HHHhcCCCCcEEEEEeeCCCC
Confidence 445566789999999998764
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.60 E-value=1.5e-15 Score=98.98 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=54.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee---eEEEEEEECCeEEEEEEEecCCcc--------ccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~ 72 (110)
...++|+|+|.+|||||||++++.+..+.....++.+. ........++ ..+.+||+||.. ++.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 46899999999999999999999988765432222211 1122333444 458899999963 2222222
Q ss_pred ccc----cCCcEEEEEEECCCh
Q 033852 73 LSY----RGADVFILAFSLISK 90 (110)
Q Consensus 73 ~~~----~~~~~~il~~d~~~~ 90 (110)
.++ +.+|++|+|+|+++.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~ 118 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRF 118 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBC
T ss_pred HHHHhcCCCCCEEEEEEeCCCC
Confidence 222 899999999999864
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=3.4e-15 Score=98.30 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=64.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee-EEEEEEECCeEEEEEEEecCCcccccc------CCcccc--
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~-- 75 (110)
+.++|+++|++|||||||++++.+..+.....+..... ....+..++. .+.+||+||+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 46899999999999999999999887644434443322 2334445554 489999999988766 455555
Q ss_pred cCCcEEEEEEECCChhH
Q 033852 76 RGADVFILAFSLISKAS 92 (110)
Q Consensus 76 ~~~~~~il~~d~~~~~s 92 (110)
..+|++++|+|.++.+.
T Consensus 80 ~~~d~vi~v~D~~~~~~ 96 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR 96 (271)
T ss_dssp TCCSEEEEEEEGGGHHH
T ss_pred cCCcEEEEEecCCcchh
Confidence 68999999999999754
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=2.3e-16 Score=110.05 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=66.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCcc----------ccccCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 72 (110)
..+|++++|++|||||||++++++..+. .....+..+.+...+..++.. +.+||++|+. .|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999988753 232333333344455566654 8899999983 3332222
Q ss_pred -ccccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 73 -LSYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 73 -~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
.+++.+|++++|||+++..+++.. .|+..+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~ 282 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYA 282 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHH
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHH
Confidence 367889999999999999888876 365543
No 133
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.58 E-value=3.7e-16 Score=109.06 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC--CCCCCC-------------------------------CCceeeeEEEEE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-------------------------------VPTVFDNFSANV 47 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~ 47 (110)
|+..+.++++++|+.++|||||+++++.. .+.... -.|....+ .
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~---~ 77 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF---M 77 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------C
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE---E
Confidence 66778899999999999999999999864 332110 01111111 1
Q ss_pred EECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 48 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
.++.....+.+||+||+++|......+++.+|++|+|+|+++ .+|+++ ..|.+..+
T Consensus 78 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~ 133 (435)
T 1jny_A 78 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTR 133 (435)
T ss_dssp EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHH
T ss_pred EEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHH
Confidence 223334679999999999998888889999999999999999 888877 55654433
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.57 E-value=4.5e-16 Score=99.16 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=59.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEEC-CeEEEEEEEecCCc----------cccccC
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQ----------EDYNRL 70 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~d~~g~----------~~~~~~ 70 (110)
+...++|+++|++|||||||++++++..+.....+..+... ....... .....+.+||++|. +.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 34678999999999999999999998863222122222111 1122232 33456899999994 344555
Q ss_pred CcccccC---CcEEEEEEECCChhH
Q 033852 71 RPLSYRG---ADVFILAFSLISKAS 92 (110)
Q Consensus 71 ~~~~~~~---~~~~il~~d~~~~~s 92 (110)
...+++. +|++++|+|.++..+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 5566655 788999999987533
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=5.9e-15 Score=103.02 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=59.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCcccc---------ccCCccccc
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYR 76 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~ 76 (110)
+|+++|.+|||||||++++++.... .....+..+.....+..++.. +.+|||+|.+.. ......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 7999999999999999999987642 222222223334455566654 789999997642 234556789
Q ss_pred CCcEEEEEEECCChhHHHH-HHhchhc
Q 033852 77 GADVFILAFSLISKASYEN-VAKKVFN 102 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~-~~~~w~~ 102 (110)
.||++|+|+|.++..++.. ....|+.
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999988654432 1145554
No 136
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=7e-15 Score=99.75 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=45.1
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECC----------ChhHHHHHHhchhccc
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKVFNCS 104 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~w~~~~ 104 (110)
..+.+++||++||+.++.+|..|+++++++|+|||++ +..+|++. ..|+..+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i 220 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDI 220 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHH
Confidence 3477999999999999999999999999999999999 78889888 4555443
No 137
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.54 E-value=2e-15 Score=103.05 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=45.5
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECC----------ChhHHHHHHhchhcccc
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKVFNCSW 105 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~w~~~~~ 105 (110)
..+.+++||++||+.++.++..|+++++++|+|||++ +..+|+++ ..|++.+.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~ 243 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVL 243 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHH
Confidence 5789999999999999999999999999999999998 88999999 66665543
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.52 E-value=6.9e-15 Score=106.04 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC--CCCC-----CCCCc------eeeeEE---EEEEE---CCeEEEEEEEec
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVPT------VFDNFS---ANVVV---DGSTVNLGLWDT 61 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~-----~~~~~------~~~~~~---~~~~~---~~~~~~~~i~d~ 61 (110)
|+..+..+++++|+.++|||||+++++.. .+.. ....+ .+..+. ..+.. ++..+.+++||+
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55567789999999999999999999752 2211 00000 111110 11111 455688999999
Q ss_pred CCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
||+.+|......+++.+|++|+|+|.++..+++.. ..|......
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~~ 124 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVEQ 124 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHHT
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHC
Confidence 99999988888889999999999999998888887 677655443
No 139
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.52 E-value=1.8e-16 Score=112.94 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=67.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEE
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 83 (110)
+..+|+++|++++|||||+++|....+.....+.....+ ...+..+ ....++|||+||++.|..+...+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999987765444333332211 1112221 12358899999999999999999999999999
Q ss_pred EEECCChhHHHHH
Q 033852 84 AFSLISKASYENV 96 (110)
Q Consensus 84 ~~d~~~~~s~~~~ 96 (110)
|+|+++....+..
T Consensus 82 VVDa~dg~~~qt~ 94 (537)
T 3izy_P 82 VVAADDGVMKQTV 94 (537)
T ss_dssp ECBSSSCCCHHHH
T ss_pred EEECCCCccHHHH
Confidence 9999986555554
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=1.1e-13 Score=95.78 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=66.4
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC---CCCCCCCC--ceeeeEEE-EEEE-------------C--C----eEEE
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVN 55 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~ 55 (110)
|+....++|+++|+.++|||||++++.+. .+..+..+ |....+.. .+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 34567899999999999999999999843 33333223 33333322 1111 1 1 1378
Q ss_pred EEEEecCCccccccCCcccccCCcEEEEEEECC----ChhHHHHHHhch
Q 033852 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----SKASYENVAKKV 100 (110)
Q Consensus 56 ~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----~~~s~~~~~~~w 100 (110)
+.+||+||+++|.......+..+|++|+|+|++ .+++++.+ ..|
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~ 130 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL 130 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH
Confidence 999999999998776667778899999999999 46777776 444
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.51 E-value=4.3e-15 Score=104.87 Aligned_cols=89 Identities=27% Similarity=0.303 Sum_probs=67.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCcc-ccccC--------Cccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~~--------~~~~ 74 (110)
.++|+++|.+|||||||++++.+.++ ...+..+..+.....+.+++. .+.+||++|.. ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998753 333333444444455666664 48999999987 65432 2346
Q ss_pred ccCCcEEEEEEECCChhHHHHH
Q 033852 75 YRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~ 96 (110)
++.+|++|+|||++++.+++..
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~ 342 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR 342 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH
T ss_pred hhcccEEEEEecCCCCCCHHHH
Confidence 7899999999999998887665
No 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=4.2e-15 Score=101.63 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=57.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC-CCCCCCC--------CceeeeE-EEEEEECCeEEEEEEEecCCc-------ccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ-------EDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~-------~~~ 67 (110)
..++|+++|++|+|||||++++... .+...+. ++..... ...+..++..+.+++||++|. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999997654 3433322 3333322 222334566778999999998 666
Q ss_pred ccCCc-------ccccCCcEE-----------EEEEECCC-hhHHHHHHhchhccccc
Q 033852 68 NRLRP-------LSYRGADVF-----------ILAFSLIS-KASYENVAKKVFNCSWL 106 (110)
Q Consensus 68 ~~~~~-------~~~~~~~~~-----------il~~d~~~-~~s~~~~~~~w~~~~~~ 106 (110)
..+.. .|++.++++ +++|++++ ..++..+...|++.+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~ 173 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN 173 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhcc
Confidence 66665 555544433 57788776 56676664466665543
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.50 E-value=5.7e-14 Score=97.13 Aligned_cols=94 Identities=14% Similarity=-0.014 Sum_probs=66.3
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEE--------EE---------EE---CCeEEEEEEEec
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA--------NV---------VV---DGSTVNLGLWDT 61 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~---~~~~~~~~i~d~ 61 (110)
...+.++|+++|+.++|||||++++.+....... ......... .. .. ......+.+||+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 3457899999999999999999999875433211 000000000 00 00 112367999999
Q ss_pred CCccccccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
||+++|......+++.+|++|+|+|+++..++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt 117 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 117 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH
Confidence 99999988888889999999999999987655555
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.49 E-value=1.1e-14 Score=102.45 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCC--------ccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~ 74 (110)
..++|+++|++|||||||++++.+..+ ......+..+.....+..++. .+.+||++|..++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 468999999999999999999988653 223223333333334556664 47899999986654432 346
Q ss_pred ccCCcEEEEEEECCChhHHHH
Q 033852 75 YRGADVFILAFSLISKASYEN 95 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~ 95 (110)
++.+|++++|+|.+++.++..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~ 321 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD 321 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH
Confidence 789999999999999776654
No 145
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.49 E-value=2.6e-14 Score=106.42 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC------------CCC------CCCCceeeeE-EEEEE------------ECCe
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT------------FPT------DYVPTVFDNF-SANVV------------VDGS 52 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~------------~~~------~~~~~~~~~~-~~~~~------------~~~~ 52 (110)
.+..+|+++|+.++|||||+++++... +.. ....|..... ..... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456799999999999999999998641 110 0001111111 11111 2345
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
.+.++|||++|+.+|...+..+++.+|++|+|+|+++..+++.. ..|.....
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~ 148 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG 148 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH
Confidence 78899999999999999999999999999999999999888887 66765443
No 146
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=2e-14 Score=100.03 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=61.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcc-------c
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------S 74 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~ 74 (110)
...++|+++|+.|+|||||++++.+..+.. ....+........+...+. ..+.+||++|++++..+... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 457899999999999999999999887632 2222222223344455443 26899999999988766433 6
Q ss_pred ccCCcEEEEEEECCChhHHHHH
Q 033852 75 YRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~s~~~~ 96 (110)
++.+|++|+|||.+..+....+
T Consensus 111 l~~aD~vllVvD~~~~~~~~~~ 132 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYEDDV 132 (423)
T ss_dssp HTSCSEEEEECSSSCCHHHHHH
T ss_pred HhcCCEEEEEEeCCChHHHHHH
Confidence 8899999999999555444443
No 147
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.48 E-value=9.7e-14 Score=94.68 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=45.6
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECCC----------hhHHHHHHhchhcccc
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKVFNCSW 105 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----------~~s~~~~~~~w~~~~~ 105 (110)
.+.+.+||++|++.++.+|..|+++++++|+|||+++ ..+|++. ..|++.+.
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~ 253 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSIC 253 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHH
Confidence 4679999999999999999999999999999999999 5678888 66665544
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=6e-15 Score=102.91 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=55.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCcc--------ccccCCccccc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~ 76 (110)
..+|+++|.+|||||||++++.+..+... .++.+... ............+.+||++|++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998765321 22222221 1112223333568999999985 45566677889
Q ss_pred CCcEEEEEEECCChhHHHH
Q 033852 77 GADVFILAFSLISKASYEN 95 (110)
Q Consensus 77 ~~~~~il~~d~~~~~s~~~ 95 (110)
.||++|+|+|.++..++..
T Consensus 82 ~ad~il~vvD~~~~~~~~d 100 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD 100 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH
T ss_pred hCCEEEEEEeCCCCCCHHH
Confidence 9999999999998766543
No 149
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.47 E-value=1.2e-14 Score=98.88 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=66.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC-CceeeeEEEEEEECCeEEEEEEEecCCcc----ccccCCccccc---CC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GA 78 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~---~~ 78 (110)
+|+|+|.++||||||++++....... .+. .|...... .+..++ ...+.+||++|.. .+..+...|++ .+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 58899999999999999998775421 211 12222221 233333 1358999999964 34445555655 49
Q ss_pred cEEEEEEECCC---hhHHHHHHhchhccccc
Q 033852 79 DVFILAFSLIS---KASYENVAKKVFNCSWL 106 (110)
Q Consensus 79 ~~~il~~d~~~---~~s~~~~~~~w~~~~~~ 106 (110)
+++|+|+|+++ +++++++ ..|+.++..
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~ 267 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSE 267 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHH
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHH
Confidence 99999999999 7888888 777776654
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.46 E-value=1.6e-14 Score=101.97 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCC---------------------------CceeeeE-EEEEEECCeE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYV---------------------------PTVFDNF-SANVVVDGST 53 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~~~---------------------------~~~~~~~-~~~~~~~~~~ 53 (110)
...+||+++|++++|||||+++|+... +..... ...+... .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 457999999999999999999997541 111000 0001111 0111223344
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHH
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~ 93 (110)
..+.|||++|+++|......+++.+|++|+|+|+++.+++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~ 150 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccc
Confidence 6799999999999988888899999999999999996543
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.46 E-value=1.5e-14 Score=104.26 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CCCC-----CCCC------ceeeeEE-EEEEE-----CCeEEEEEEEecCCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVP------TVFDNFS-ANVVV-----DGSTVNLGLWDTAGQE 65 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~-----~~~~------~~~~~~~-~~~~~-----~~~~~~~~i~d~~g~~ 65 (110)
+..+++++|+.++|||||+++++.. .+.. .... ..+..+. ..+.+ ++..+.+++||+||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4568999999999999999999862 2211 1101 1122221 11222 4557899999999999
Q ss_pred ccccCCcccccCCcEEEEEEECCChhHHHHHHhchhccccc
Q 033852 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWL 106 (110)
Q Consensus 66 ~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~ 106 (110)
+|......+++.+|++|+|+|+++..+++.. ..|......
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~ 122 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM 122 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC
Confidence 9988888899999999999999998777777 667655443
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=2.7e-14 Score=94.19 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=39.1
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcCC-CCCCC-------CCceeeeE-EEEEEECCeEEEEEEEecCCcc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~~-~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~ 65 (110)
....++|+++|.+|+|||||+++++... +...+ .++..... ...+..++..+.+.+||+||..
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 3457999999999999999999976554 33333 34444333 2233345556789999999974
No 153
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.46 E-value=5.2e-13 Score=90.24 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=43.4
Q ss_pred EEEEEEEecCCccccccCCcccccCCcEEEEEEECC----------ChhHHHHHHhchhccc
Q 033852 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKVFNCS 104 (110)
Q Consensus 53 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~w~~~~ 104 (110)
.+.+++||++||+.++.+|..|+++++++|+|||++ +..+|++. ..|++.+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i 226 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTI 226 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHH
Confidence 377999999999999999999999999999999665 67788888 5555544
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.3e-14 Score=101.66 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=61.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeEEEEEEECCeEEEEEEEecCC----------ccccccCC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 71 (110)
...+|++++|++|+|||||++++.+... ...+..+..+.+...+..++. .+.+||++| ++.|..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3578999999999999999999997652 223233333333445556665 588999999 56665554
Q ss_pred c-ccccCCcEEEEEEECCChhH
Q 033852 72 P-LSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 72 ~-~~~~~~~~~il~~d~~~~~s 92 (110)
. .+++.+|++|+|+|.++..+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~ 292 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII 292 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcC
Confidence 4 36788999999999998544
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.45 E-value=4.2e-14 Score=101.99 Aligned_cols=93 Identities=20% Similarity=0.161 Sum_probs=67.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCceeeeEEEEEE-------------ECCeEEEEEEEecCCccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD----YVPTVFDNFSANVV-------------VDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~~~i~d~~g~~~ 66 (110)
.+..+|+++|+.++|||||++++.+..+... ..++.+..+..... .+.....++||||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3567999999999999999999987654321 11222222221000 000112489999999999
Q ss_pred cccCCcccccCCcEEEEEEECCC---hhHHHHH
Q 033852 67 YNRLRPLSYRGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~---~~s~~~~ 96 (110)
|..++..+++.+|++|+|+|+++ +++++.+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l 115 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH
Confidence 99999999999999999999999 8888877
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.45 E-value=4.5e-15 Score=105.78 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=68.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC-----------------CCCCCC---ceeeeE-EEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-----------------PTDYVP---TVFDNF-SANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~-----------------~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~d~~g 63 (110)
+..+|+++|.+|+|||||+++++...- .....+ ..+... .....+....+.+.|||+||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999962110 000000 001111 11122222346799999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+.+|......+++.+|++|+|+|.++..+.+.. ..|.....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~ 132 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL 132 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH
Confidence 999999999999999999999999998777776 66654433
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.44 E-value=5.4e-13 Score=92.39 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=65.4
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC---CCCCCCCC--ceeeeEEE-EEEE-------------C--C----eEEEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 57 (110)
....++|+++|+.++|||||++++.+. .+..+..+ |....+.. .... . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 356789999999999999999999843 23333223 33333322 1111 1 1 137799
Q ss_pred EEecCCccccccCCcccccCCcEEEEEEECCC----hhHHHHH
Q 033852 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----KASYENV 96 (110)
Q Consensus 58 i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----~~s~~~~ 96 (110)
+||+||+++|.......+..+|++|+|+|+++ +++++.+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l 129 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL 129 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH
Confidence 99999999887666667778999999999994 5677666
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.43 E-value=4.1e-14 Score=97.90 Aligned_cols=92 Identities=17% Similarity=0.083 Sum_probs=63.9
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhcC--------CCCCC--CC-----CceeeeE-EEEEEECCeEEEEEEEecCCccc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--YV-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~~--------~~~~~--~~-----~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
....++++++|+.++|||||++++... .+... .. ...+..+ ......+.....+.+||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999873 22110 00 0111111 11222333445689999999999
Q ss_pred cccCCcccccCCcEEEEEEECCChhHHH
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKASYE 94 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~s~~ 94 (110)
|......+++.+|++|+|+|.++....+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q 115 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ 115 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH
Confidence 9877778889999999999999865433
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.42 E-value=2.7e-13 Score=92.41 Aligned_cols=98 Identities=18% Similarity=0.095 Sum_probs=65.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEECCeEEEEEEEecCCcccccc---------CCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~ 73 (110)
..++++++|.+|||||||++++.+..+.....+ +.... ...+... ...+.+||++|...... ....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE-EEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee-EEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 567999999999999999999998764322111 11221 1122223 35689999999865321 1112
Q ss_pred cccCCcEEEEEEECCChh--HHHHHHhchhccccc
Q 033852 74 SYRGADVFILAFSLISKA--SYENVAKKVFNCSWL 106 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~--s~~~~~~~w~~~~~~ 106 (110)
+...+|++++|+|+++.. ++++. ..|+..+..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~ 276 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHG 276 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHH
Confidence 345699999999999887 67776 677766543
No 160
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=2.1e-13 Score=93.29 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=55.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeEEEEEEECCe---------------EEEEEEEecCCccccc-
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP--TVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN- 68 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~~- 68 (110)
++++++|.+|||||||++++.+..+.....| |...... .+.+++. ...+++||++|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 6899999999999999999998764322111 2222211 2233332 2568999999987653
Q ss_pred ---cCCcc---cccCCcEEEEEEECCC
Q 033852 69 ---RLRPL---SYRGADVFILAFSLIS 89 (110)
Q Consensus 69 ---~~~~~---~~~~~~~~il~~d~~~ 89 (110)
.+... +++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34444 3689999999999987
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.42 E-value=9.8e-14 Score=95.83 Aligned_cols=88 Identities=18% Similarity=0.101 Sum_probs=61.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC-------CCCCC--CCC-----ceeeeEE-EEEEECCeEEEEEEEecCCcccccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD--YVP-----TVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~-------~~~~~--~~~-----~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
+.++++++|+.++|||||++++... .+... ... ..+.... ....+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 12110 000 0011111 1122333345689999999999877
Q ss_pred CCcccccCCcEEEEEEECCChhH
Q 033852 70 LRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s 92 (110)
....+++.+|++|+|+|+++...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~ 104 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPM 104 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCC
Confidence 77788999999999999998443
No 162
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.42 E-value=7.3e-13 Score=92.60 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=60.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--CCCCC-------------------------C--CceeeeEE-EEEEECCeE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY-------------------------V--PTVFDNFS-ANVVVDGST 53 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~~-------------------------~--~~~~~~~~-~~~~~~~~~ 53 (110)
...++++++|..++|||||+++++... +.... . ...+.... ....+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 457899999999999999999995431 11100 0 00011111 111222334
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
..+.|||+||+++|......+++.+|++|+|+|.++.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 5799999999999988888889999999999999985
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.42 E-value=2.9e-13 Score=92.66 Aligned_cols=92 Identities=22% Similarity=0.157 Sum_probs=58.5
Q ss_pred ceE-EEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeEEEEEEECCeEEEEEEEecCCccc---------cccCCccc
Q 033852 6 FIK-CVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS 74 (110)
Q Consensus 6 ~~k-i~vlG~~~~GKtsl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~ 74 (110)
.++ ++++|.+|||||||++++.+..+.....+ +..+.....+.+++. .+.+||++|... |.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 89999999999999999998775322111 112223445666664 578999999622 22222 24
Q ss_pred ccCCcEEEEEEECCChh--HHHHHHhchh
Q 033852 75 YRGADVFILAFSLISKA--SYENVAKKVF 101 (110)
Q Consensus 75 ~~~~~~~il~~d~~~~~--s~~~~~~~w~ 101 (110)
++.+|++++|+|++++. +++.+ ..|.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~-~~~~ 282 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETL-QSSF 282 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHH-HHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHH-HHHH
Confidence 67899999999999877 55544 4443
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.41 E-value=3.4e-13 Score=90.17 Aligned_cols=84 Identities=17% Similarity=0.075 Sum_probs=59.6
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCC-ceeeeEEEEEEECCeEEEEEEEecCCcc---------ccccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~ 72 (110)
.+..+++++|++|||||||++++++..+.. ...+ +........+..+ ...+.+||+||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999886531 1111 2221122222233 3568999999987 3455667
Q ss_pred ccccCCcEEEEEEECCC
Q 033852 73 LSYRGADVFILAFSLIS 89 (110)
Q Consensus 73 ~~~~~~~~~il~~d~~~ 89 (110)
.+++.+|++++|+|.++
T Consensus 84 ~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR 100 (301)
T ss_dssp SCCCCEEEEEEEEETTC
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 88999999999999977
No 165
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=3.7e-13 Score=93.98 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=57.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCC-----------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 71 (110)
..+|++++|++|||||||++++.+.... .....+..+.....+..++. .+.+||++|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987642 22222222333445666776 47899999985443221
Q ss_pred -cccccCCcEEEEEEECCChhHHHH
Q 033852 72 -PLSYRGADVFILAFSLISKASYEN 95 (110)
Q Consensus 72 -~~~~~~~~~~il~~d~~~~~s~~~ 95 (110)
..+++.+|++++++|.++..+++.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 124567999999999998666544
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=2.4e-14 Score=100.35 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=59.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCC--------ccccccCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY 75 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~~~ 75 (110)
...+|+++|.+|||||||++++.+..+... ..+.+... ............+.+||++| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 356999999999999999999998765321 22222222 12223344445789999999 666777777888
Q ss_pred cCCcEEEEEEECCCh
Q 033852 76 RGADVFILAFSLISK 90 (110)
Q Consensus 76 ~~~~~~il~~d~~~~ 90 (110)
+.+|++|+|+|..+.
T Consensus 101 ~~ad~il~VvD~~~~ 115 (456)
T 4dcu_A 101 DEADVIIFMVNGREG 115 (456)
T ss_dssp HHCSEEEEEEESSSC
T ss_pred hhCCEEEEEEeCCCC
Confidence 999999999998763
No 167
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.41 E-value=3.8e-13 Score=95.02 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=64.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCC-------CCCCCCC--ceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY 75 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 75 (110)
+.++++++|..++|||||++++.+.. +..+..+ |....+. .+..++ ..+.+||+||+++|......++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC-EEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceE-EEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 57899999999999999999998766 1111111 1111111 233344 5689999999999877777888
Q ss_pred cCCcEEEEEEECCC---hhHHHHH
Q 033852 76 RGADVFILAFSLIS---KASYENV 96 (110)
Q Consensus 76 ~~~~~~il~~d~~~---~~s~~~~ 96 (110)
+.+|++|+|+|+++ +++++.+
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l 118 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM 118 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH
T ss_pred hhCCEEEEEEecCCCccHHHHHHH
Confidence 99999999999998 6777666
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.40 E-value=1.3e-13 Score=98.28 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=60.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CCCCC----------C--------CCceeeeE-EEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD----------Y--------VPTVFDNF-SANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~----------~--------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g 63 (110)
+..+++++|++|+|||||+++++.. .+... . .+..+..+ .....+....+.+.+||+||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 5789999999999999999999863 11100 0 00111111 00122222346799999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCChhH
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
+.+|......+++.+|++|+|+|.++...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 99998888889999999999999988543
No 169
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.7e-12 Score=89.77 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=48.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC------CceeeeEEE-E---------------EEECC-eEEEEEEEecCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNFSA-N---------------VVVDG-STVNLGLWDTAG 63 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~------~~~~~~~~~-~---------------~~~~~-~~~~~~i~d~~g 63 (110)
++|+++|.+|||||||++++.+........ ++.+..+.. . ..+++ ..+.+++||++|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876321111 222221110 0 01122 247899999999
Q ss_pred ccc----cccCCc---ccccCCcEEEEEEECCCh
Q 033852 64 QED----YNRLRP---LSYRGADVFILAFSLISK 90 (110)
Q Consensus 64 ~~~----~~~~~~---~~~~~~~~~il~~d~~~~ 90 (110)
..+ ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 853 233333 457899999999999886
No 170
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=94.63 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=48.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce--eeeEEEEEEECCe---------------EEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 67 (110)
..++++++|.+|||||||++++.+..+.....|.. ... ...+.+.+. ...+++||++|..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~-~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN-ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCS-EEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce-eEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35789999999999999999999876533222211 111 122333321 235899999998765
Q ss_pred cc-------CCcccccCCcEEEEEEECCChhHHHHH
Q 033852 68 NR-------LRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 68 ~~-------~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
.. .+..+++.+|++++|+|+++.+++..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence 43 234567899999999999987776544
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.39 E-value=9.4e-14 Score=97.74 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=50.1
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------CCCceeeeEEEEEEE
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD-------------------------------YVPTVFDNFSANVVV 49 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~ 49 (110)
....++|+++|+.++|||||+++++. +.+... .-.|....+ ..+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence 35678999999999999999999874 322110 000111100 01222
Q ss_pred CCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 50 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
+ ...+.|||+||+++|......+++.+|++|+|+|+++.
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 2 35689999999999988888889999999999999985
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.39 E-value=4.2e-13 Score=94.23 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=62.7
Q ss_pred CC-CccceEEEEECCCCCcHHHHHHHHhcC--CCCCC-------------------------------CCCceeeeEEEE
Q 033852 1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-------------------------------YVPTVFDNFSAN 46 (110)
Q Consensus 1 m~-~~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~ 46 (110)
|. +...++++++|..++|||||+++|+.. .+... .-.|....+.
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~-- 78 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW-- 78 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--
Confidence 55 456799999999999999999999864 22110 0011111111
Q ss_pred EEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 47 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.++.....+.|||+||+++|......+++.+|++|+|+|+++.
T Consensus 79 -~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 79 -KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp -EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred -EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 1223346799999999999988888889999999999999976
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.38 E-value=1.4e-13 Score=100.72 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=68.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc--CCCCC------------------CCCCceeeeEEEEEEECCeEEEEEEEecCC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g 63 (110)
.+..+|+++|+.|+|||||+++++. +.+.. ...++.... ...+... .+.+.+||+||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcC
Confidence 4578999999999999999999984 22210 001111111 1112222 46799999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccc
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSW 105 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~ 105 (110)
+.+|......+++.+|++|+|+|.++..+++.. ..|.....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~~~ 127 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQAEK 127 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHHHH
Confidence 999988888899999999999999998888777 66655433
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.4e-12 Score=94.44 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=61.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCC---------------------------------CCceeeeEEEEEEEC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY---------------------------------VPTVFDNFSANVVVD 50 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 50 (110)
...++|+++|.+++|||||+++++.....-.. -.|....+ ..+ .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~-~~~--~ 241 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT-SHF--S 241 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSC-CEE--E
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeee-EEE--e
Confidence 45789999999999999999999865321110 00111111 112 2
Q ss_pred CeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCCh
Q 033852 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 51 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.....+.|||+||+++|......+++.+|++|+|+|+++.
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 2345789999999999988888899999999999999873
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=6.5e-13 Score=92.64 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=59.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--CCCC----------CCCceeeeE-------------------E-EEEEECC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF-------------------S-ANVVVDG 51 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~--~~~~----------~~~~~~~~~-------------------~-~~~~~~~ 51 (110)
...++++++|+.++|||||+++|+.+. +... ..++.+..+ . .......
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 346899999999999999999998653 1111 001111000 0 0011222
Q ss_pred eEEEEEEEecCCccccccCCcccccCCcEEEEEEECCChh
Q 033852 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 52 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~ 91 (110)
....+.+||+||+++|......+++.+|++|+|+|+++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~ 141 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 141 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 3456899999999999877777889999999999999853
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.37 E-value=2.5e-14 Score=101.33 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=65.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 82 (110)
++..+++++|+.++|||||++++....+.....+..-... ...+..++ ..+.|||+||++.|..++..+++.+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4667899999999999999999987654432221110000 11122233 35889999999999999999999999999
Q ss_pred EEEECCC---hhHHHHH
Q 033852 83 LAFSLIS---KASYENV 96 (110)
Q Consensus 83 l~~d~~~---~~s~~~~ 96 (110)
+|+|+++ +++++.+
T Consensus 80 LVVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI 96 (501)
T ss_dssp EEEETTTBSCTTTHHHH
T ss_pred EEeecccCccHHHHHHH
Confidence 9999988 5555544
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.37 E-value=1.5e-12 Score=95.57 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=69.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC--CCCCC-----------CCC---ceeeeEE---EEEEE-----CCeEEEEEEE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------YVP---TVFDNFS---ANVVV-----DGSTVNLGLW 59 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~-----------~~~---~~~~~~~---~~~~~-----~~~~~~~~i~ 59 (110)
.+..+|+++|..++|||||+.+++.. .+... +.+ ..+.... ..+.. ++..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45789999999999999999999742 22110 000 0011111 11221 2334889999
Q ss_pred ecCCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcc
Q 033852 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 60 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
|++|+.+|......+++.+|++|+|+|.++..+.+.. ..|...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~ 130 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQA 130 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHH
Confidence 9999999988888899999999999999987776665 556543
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.36 E-value=2.8e-13 Score=85.44 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=52.7
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeE-EEEEEECCeEEEEEEEecCCccc----------cccCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLRP 72 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 72 (110)
.+..+++++|++|||||||++++.+..+.....++.+... ...+..++ .+.+||++|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4578999999999999999999988775444455554433 22222323 467999999743 121222
Q ss_pred ccc---cCCcEEEEEEECCChhHHH
Q 033852 73 LSY---RGADVFILAFSLISKASYE 94 (110)
Q Consensus 73 ~~~---~~~~~~il~~d~~~~~s~~ 94 (110)
.++ +.++++++++|+++..++.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~ 125 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDL 125 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchh
Confidence 333 4789999999999865543
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.36 E-value=2.2e-13 Score=99.77 Aligned_cols=97 Identities=11% Similarity=-0.033 Sum_probs=67.8
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc--CCCCCCC--CC--ce----------eeeE---EEEEEECCeEEEEEEEecCCc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY--VP--TV----------FDNF---SANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~--~~~~~~~--~~--~~----------~~~~---~~~~~~~~~~~~~~i~d~~g~ 64 (110)
.+..+|+++|..|+|||||+++++. +.+.... .. +. +... ...+..+ ...+.+||++|+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 4578999999999999999999985 3321100 00 00 0000 1112223 367899999999
Q ss_pred cccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcc
Q 033852 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 65 ~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
.+|......+++.+|++|+|+|.++..+++.. ..|...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~~ 123 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQA 123 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHH
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHHH
Confidence 99988888899999999999999998777776 556543
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.35 E-value=7.6e-13 Score=96.96 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=66.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCcee--eeE------EEEEEE-CCe----------------------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVF--DNF------SANVVV-DGS---------------------- 52 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~--~~~------~~~~~~-~~~---------------------- 52 (110)
..++|+|+|++|+|||||++++++..+.+ ...|+.. ..+ ...+.. ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 57899999999999999999999876533 2233221 000 001111 000
Q ss_pred -----------------------E--EEEEEEecCCccc---cccCCcccccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 53 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 53 -----------------------~--~~~~i~d~~g~~~---~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
. ..+.+||+||... .......+++.+|++|+|+|.+++.++... ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 2488999999654 334556788899999999999998887777 6665443
No 181
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.33 E-value=3.2e-13 Score=96.71 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=62.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC---CCCCCceeeeEEEEEE-------EC-----------------------C
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANVV-------VD-----------------------G 51 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~-----------------------~ 51 (110)
...+|+|+|.+|+|||||++++++..+. ....|+... ...... .+ +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4679999999999999999999998763 222232210 000000 00 0
Q ss_pred eE---------EEEEEEecCCccc-----------cccCCcccccCCcEEEEEEECCChhHHHHHHhchhccc
Q 033852 52 ST---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCS 104 (110)
Q Consensus 52 ~~---------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~ 104 (110)
.. ..+.+||++|... +......++..+|++|+|+|.++....... ..|+..+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l 214 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGAL 214 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHT
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHH
Confidence 00 2588999999864 334455567889999999999885444444 4444443
No 182
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.30 E-value=1.4e-12 Score=86.34 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP 32 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~ 32 (110)
...+|+++|++|||||||++++.+..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4679999999999999999999998874
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.27 E-value=9.4e-13 Score=100.31 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=60.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC-------CCCCC--C-----CCceeeeEE-EEEEECCeEEEEEEEecCCccccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD--Y-----VPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYN 68 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~-------~~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~ 68 (110)
...++|+++|+.++|||||++++... .+... . ..+.+..+. ..+..+.....+.|||+||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 45789999999999999999999863 11100 0 011122111 112233344678999999999998
Q ss_pred cCCcccccCCcEEEEEEECCChh
Q 033852 69 RLRPLSYRGADVFILAFSLISKA 91 (110)
Q Consensus 69 ~~~~~~~~~~~~~il~~d~~~~~ 91 (110)
.....+++.+|++|+|+|+++..
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv 396 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGP 396 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCS
T ss_pred HHHHHHHhhCCEEEEEEcCCccC
Confidence 77778899999999999999853
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.25 E-value=2.9e-12 Score=93.53 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=64.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc----------------eeeeE-EEEEEECCeEEEEEEEecCCccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT----------------VFDNF-SANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
.+..+++++|+.|+|||||++++...........+ .+..+ .....+....+.+++||++|+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35678999999999999999999843321100000 01111 11222333357799999999999
Q ss_pred cccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 67 YNRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 67 ~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
|......+++.+|++++++|.++..+.+..
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~ 116 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE 116 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH
Confidence 988888899999999999999875544433
No 185
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.25 E-value=1.9e-12 Score=88.85 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=53.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
+++++|..++|||||++++. +.-.|....+ .........+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 1111111111 1223334569999999999987666677899999999999
Q ss_pred CC
Q 033852 88 IS 89 (110)
Q Consensus 88 ~~ 89 (110)
++
T Consensus 93 ~~ 94 (370)
T 2elf_A 93 PQ 94 (370)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.24 E-value=2e-12 Score=93.25 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcC--CCCCCC-------CC--------------------ceeeeEEE-EEEECCeE
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY-------VP--------------------TVFDNFSA-NVVVDGST 53 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~--~~~~~~-------~~--------------------~~~~~~~~-~~~~~~~~ 53 (110)
...++|+++|..++|||||+++|+.. .+.... .. ..+..... ...+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 35689999999999999999999642 110000 00 00111100 11122234
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCC
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 89 (110)
..+.|||+||+++|......+++.+|++|+|+|+++
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 678999999999998888889999999999999985
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.24 E-value=4.7e-12 Score=84.51 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
...+|+|+|++|||||||++++.+..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 456899999999999999999998876
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.24 E-value=4.2e-12 Score=86.57 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=56.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce---eeeEEE--------------------------------------
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSA-------------------------------------- 45 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~---~~~~~~-------------------------------------- 45 (110)
-+|+|+|++|||||||++++.+..+.+...... +.....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 389999999999999999999987733322111 000000
Q ss_pred ------------EEEE-CCeEEEEEEEecCCcccc-------------ccCCcccccCCcEEEEEEECCCh
Q 033852 46 ------------NVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISK 90 (110)
Q Consensus 46 ------------~~~~-~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~il~~d~~~~ 90 (110)
.+.+ ......+.+||+||..++ ..+...|++.+|++|+++|..+.
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 0000 011235889999998776 45666788999999999987653
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=2.6e-11 Score=84.36 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=54.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCC--------CCceeeeE-EEEEEECCeEEEEEEEecCCcccccc------
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR------ 69 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~------ 69 (110)
-.++|+++|++|||||||++++++..+.... .++..... ...+...+....+++||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3689999999999999999999987763221 11222111 11112233445799999999765311
Q ss_pred -------------------CCcccccCCcEEEEEEECCCh-hHHHHHHhchhcccc
Q 033852 70 -------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKVFNCSW 105 (110)
Q Consensus 70 -------------------~~~~~~~~~~~~il~~d~~~~-~s~~~~~~~w~~~~~ 105 (110)
+...+++++++.+++|..... .++..+...|+..+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 234566777766666666654 455555335665544
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.20 E-value=8.4e-11 Score=81.40 Aligned_cols=57 Identities=23% Similarity=0.389 Sum_probs=49.8
Q ss_pred EEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCC----------hhHHHHHHhchhccccc
Q 033852 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKVFNCSWL 106 (110)
Q Consensus 47 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----------~~s~~~~~~~w~~~~~~ 106 (110)
+.+++ +.++|||++|++.++.+|..|+++++++|+|||+++ ..+|+++ ..|+..+..
T Consensus 212 ~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~ 278 (402)
T 1azs_C 212 FQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWN 278 (402)
T ss_dssp EEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHT
T ss_pred eecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHh
Confidence 44444 789999999999999999999999999999999999 8999999 778776543
No 191
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.17 E-value=4.4e-11 Score=81.99 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=53.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCC-ceeeeEEEEEEECC-------------------eEEEEEEEecCCcc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVP-TVFDNFSANVVVDG-------------------STVNLGLWDTAGQE 65 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~i~d~~g~~ 65 (110)
++++++|.+|||||||++++.+.... ..+.. |...+... ..+.+ ....+++||++|..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV-VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE-EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee-EecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 57999999999999999999876421 11111 11111111 11211 23569999999987
Q ss_pred ccc----cCCcc---cccCCcEEEEEEECCC
Q 033852 66 DYN----RLRPL---SYRGADVFILAFSLIS 89 (110)
Q Consensus 66 ~~~----~~~~~---~~~~~~~~il~~d~~~ 89 (110)
++. .+... +++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 653 23332 3689999999999986
No 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.13 E-value=2.1e-12 Score=86.30 Aligned_cols=79 Identities=14% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHhcCCCC-CCCCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEECCChh-HHHHHHh
Q 033852 21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK 98 (110)
Q Consensus 21 sl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~-s~~~~~~ 98 (110)
+|+.+|+.+.|. +.+.||.++.+...+..++ .+.+||+ +++++.+++.+++++|++|+|||+++++ +|+.+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688899999998 8889999877664432222 6899999 8999999999999999999999999998 78877 8
Q ss_pred chhcccc
Q 033852 99 KVFNCSW 105 (110)
Q Consensus 99 ~w~~~~~ 105 (110)
.|+..++
T Consensus 106 ~~l~~~~ 112 (301)
T 1u0l_A 106 KFLVLAE 112 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.11 E-value=7.4e-12 Score=83.72 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=32.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC-CCCCCCC--------CceeeeE-EEEEEECCeEEEEEEEecCCc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~d~~g~ 64 (110)
-.++|+++|++|||||||++++.+. .++.... ++..... .......+....+++||++|.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 4689999999999999999998765 4443321 1111111 112222344578999999998
No 194
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.06 E-value=1.3e-09 Score=74.53 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=54.2
Q ss_pred CcHHHH--HHHHhcCCCCCC-------CCCceeeeEEEEEEECCeEEEEEEEecCCccccccCCcccccCCcEEEEEEEC
Q 033852 17 VGKTCM--LISYTSNTFPTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (110)
Q Consensus 17 ~GKtsl--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 87 (110)
+.|--| +.|+....+.+. ..+|.+... ..+..++ +.+.+||++|++.++..|..++++++++|+|||+
T Consensus 158 s~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~-~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dl 234 (362)
T 1zcb_A 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE-YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234 (362)
T ss_dssp THHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE-EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred cHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE-EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEEC
Confidence 444444 566666665543 234555433 2344443 7799999999999999999999999999999999
Q ss_pred CC----------hhHHHHHHhchhccc
Q 033852 88 IS----------KASYENVAKKVFNCS 104 (110)
Q Consensus 88 ~~----------~~s~~~~~~~w~~~~ 104 (110)
++ ..+|++. ..|+..+
T Consensus 235 s~~dq~l~ed~~~n~~~es-~~~~~~i 260 (362)
T 1zcb_A 235 SEFDQVLMEDRQTNRLTES-LNIFETI 260 (362)
T ss_dssp TCTTCEETTEEEEEHHHHH-HHHHHHH
T ss_pred ccccccccccccccHHHHH-HHHHHHH
Confidence 99 7899988 5555544
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.94 E-value=2.7e-10 Score=77.50 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP 32 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~ 32 (110)
...+|+|+|+++||||||++++.+..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3569999999999999999999998874
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.94 E-value=1.3e-09 Score=75.77 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=57.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-CCCCCc-eeeeEEEEEEECCeEEEEEEEecCCccc----cccCCccc---ccCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGA 78 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~~~~ 78 (110)
.++++|++|||||||++++...... ..+..+ .... ...+..++ ...+.+||++|..+ +..+...+ ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~-~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN-LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE-EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce-eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4789999999999999999876421 111111 1111 11233333 24578999999743 22233333 3469
Q ss_pred cEEEEEEECCChhHHHHHHhchhcc
Q 033852 79 DVFILAFSLISKASYENVAKKVFNC 103 (110)
Q Consensus 79 ~~~il~~d~~~~~s~~~~~~~w~~~ 103 (110)
+.++.++|++ ..++.++ ..|..+
T Consensus 237 ~~lL~vvDls-~~~~~~l-s~g~~e 259 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTL-ETLRKE 259 (416)
T ss_dssp SEEEEEEETT-SCHHHHH-HHHHHH
T ss_pred HhhhEEeCCc-cCCHHHH-HHHHHH
Confidence 9999999998 6667776 555544
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=2.1e-09 Score=74.23 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=54.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCce-eeeEEEEEEECCe---------------EEEEEEEecCCcccc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTV-FDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~i~d~~g~~~~ 67 (110)
...++.++|.+|||||||++.+.+... .....|.. .......+.+.+. ...+.+||++|....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999998664 32222211 1111222333331 135889999986432
Q ss_pred cc-------CCcccccCCcEEEEEEECCC
Q 033852 68 NR-------LRPLSYRGADVFILAFSLIS 89 (110)
Q Consensus 68 ~~-------~~~~~~~~~~~~il~~d~~~ 89 (110)
.. .....++.+|+++.++|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 12234578999999999875
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.91 E-value=5.6e-09 Score=71.77 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=57.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeEEEEEEECCeEEEEEEEecCCcccccc----CCc---ccccC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRP---LSYRG 77 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~~~---~~~~~ 77 (110)
..+|.++|.|+||||||++++.+..... .+..+..+.....+.+.+. ++++.|+||..+-.. +.. ..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 3589999999999999999998765332 2222222223334556664 578999999643211 111 23568
Q ss_pred CcEEEEEEECCChhH
Q 033852 78 ADVFILAFSLISKAS 92 (110)
Q Consensus 78 ~~~~il~~d~~~~~s 92 (110)
||++++|.|.+++..
T Consensus 150 ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH 164 (376)
T ss_dssp CSEEEEEEETTSHHH
T ss_pred cCccccccccCccHH
Confidence 999999999999754
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.90 E-value=5.7e-10 Score=79.96 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=69.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC--CC----------------CCCC--CCceeeeE-EEEEEECCeEEEEEEEecCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN--TF----------------PTDY--VPTVFDNF-SANVVVDGSTVNLGLWDTAG 63 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~--~~----------------~~~~--~~~~~~~~-~~~~~~~~~~~~~~i~d~~g 63 (110)
+.=++.++|..++|||||..+++.. .. .... ....+.++ ...+.+....+.++|.||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3458999999999999999998621 10 0000 00001111 11233333457799999999
Q ss_pred ccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccccccC
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
..+|..-..+.++-+|++|+|+|....-.-+.. ..|..+....+|
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~~lp 154 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMRATP 154 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHhCCc
Confidence 999999888899999999999999986665555 566655555444
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.75 E-value=2.4e-11 Score=77.45 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=28.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF 40 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~ 40 (110)
+..+++++|++|||||||+++++...+...+.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 468999999999999999999998766554444444
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.65 E-value=1.4e-08 Score=74.69 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=66.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC--------CCCCC--C-C-----CceeeeE-EEEEEE--C-----CeEEEEEEEec
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--Y-V-----PTVFDNF-SANVVV--D-----GSTVNLGLWDT 61 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~--------~~~~~--~-~-----~~~~~~~-~~~~~~--~-----~~~~~~~i~d~ 61 (110)
.=++.++|.-++|||||..+++.. ..... + + ...+.++ ...+.+ . ...+.+++.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 348999999999999999998632 11110 0 0 0001111 112222 1 23588999999
Q ss_pred CCccccccCCcccccCCcEEEEEEECCChhHHHHHHhchhcccccccC
Q 033852 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
||+.+|..-....++-+|++|+|.|...--.-+.. ..|..+.+..+|
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~~lp 139 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKYGVP 139 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHHTCC
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHcCCC
Confidence 99999988888899999999999999886555555 556555554443
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=2.9e-08 Score=65.15 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=34.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 66 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~ 66 (110)
++++++|.+|||||||++++.+...... .++.+.... ..+..+. .+.+||+||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5999999999999999999997765322 222222211 1122222 478999999754
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.53 E-value=1.1e-07 Score=62.98 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=34.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCcc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~ 65 (110)
..++++++|.+|||||||++++.+...... .+..+.+.. ..+..+. .+.++|+||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 468999999999999999999997653221 111121111 1122222 47899999964
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.51 E-value=1.1e-09 Score=79.66 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=67.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCC---------CCCc-----eeeeE-EEEEEECCeEEEEEEEecCCcccccc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTD---------YVPT-----VFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR 69 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~--~~~~~~---------~~~~-----~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~ 69 (110)
-+|.++|..++|||||..+++. +..... .+.. .+.++ ...+.+......+++.||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3689999999999999999863 222110 0000 01111 12233344556799999999999988
Q ss_pred CCcccccCCcEEEEEEECCChhHHHHHHhchhcccccccC
Q 033852 70 LRPLSYRGADVFILAFSLISKASYENVAKKVFNCSWLLIQ 109 (110)
Q Consensus 70 ~~~~~~~~~~~~il~~d~~~~~s~~~~~~~w~~~~~~~~~ 109 (110)
-....++-+|++|+|+|...--.-+.. ..|.......+|
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~~lp 121 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKMGIP 121 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHHTCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHcCCC
Confidence 888899999999999999875444444 455544444433
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.47 E-value=9.7e-08 Score=60.39 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+..+++++|.+|||||||++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.45 E-value=5.2e-08 Score=66.34 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=27.8
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCChhHHHHH
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV 96 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 96 (110)
+.+.|||++|.... ....+..+|++++|+|.+..+.++.+
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l 211 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI 211 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH
Confidence 56889999994321 11234789999999998776655544
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.38 E-value=1.6e-07 Score=63.89 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...++++|.+|||||||++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999985
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.22 E-value=1.7e-07 Score=63.57 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=24.0
Q ss_pred EEEEEEecCCccccccCCcccccCCcEEEEEEECCChhH
Q 033852 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 54 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
+.+.|+|++|....... ..+.+|++++|+|.++.+.
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-----
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH
Confidence 56899999996543322 3578999999999876544
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.21 E-value=4.4e-06 Score=62.05 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
..-+|+|+|++++|||||++.+.+..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 345999999999999999999999876
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.16 E-value=1.8e-06 Score=62.49 Aligned_cols=62 Identities=19% Similarity=0.043 Sum_probs=37.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-----ceeeeEEEEEEE-CCeEEEEEEEecCCccc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----TVFDNFSANVVV-DGSTVNLGLWDTAGQED 66 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~ 66 (110)
.+...|+|+|.+|||||||++++.+....-.... |.+.... .... ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~-~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW-CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE-EEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe-ecccccCCCceEEEecCCCcCc
Confidence 3567899999999999999999988753111111 1122111 1111 12224578999999653
No 211
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.04 E-value=7.1e-09 Score=72.95 Aligned_cols=95 Identities=18% Similarity=0.034 Sum_probs=53.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeEE-EEEEECCeEEEEEEEecCCccc--cccCC--------cc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL 73 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~d~~g~~~--~~~~~--------~~ 73 (110)
...+|+++|.+|+||||+.+++...-.. ...++...... ......+......+||..|++. .+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998754211 11122111100 0000011112346888888732 23332 45
Q ss_pred cccCCcEEEEEEECCChhHHHHHHhchhc
Q 033852 74 SYRGADVFILAFSLISKASYENVAKKVFN 102 (110)
Q Consensus 74 ~~~~~~~~il~~d~~~~~s~~~~~~~w~~ 102 (110)
++..+.+.++++|.++. +++.. +.|+.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~ 143 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERR-AMIFN 143 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHH-HHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHH-HHHHH
Confidence 66667888899999987 33333 44433
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.03 E-value=8.1e-06 Score=55.93 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
..+++++|.+|+|||||++.+.+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999999875
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.98 E-value=1.1e-05 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
..+++++|.+|+|||||++++.+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 357999999999999999999875
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.91 E-value=6.3e-06 Score=54.24 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++++|+.|+|||||++.+++.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998864
No 215
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.88 E-value=1.1e-05 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.4
Q ss_pred ccceEEEEECCCCCcHHHHHHHHh
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
.+...+++.|..||||||++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 356789999999999999999987
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.83 E-value=6.1e-05 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
.++++|+|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 35799999999999999999987654
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.82 E-value=1.2e-05 Score=50.40 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|...+...+.++|+.|+|||||++.+..
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6666667899999999999999988764
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=1.4e-05 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++++|++|+|||||++.+.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987653
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.5e-05 Score=49.08 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|||||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 220
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.73 E-value=2.5e-05 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+.--++++|++|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446899999999999999998743
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.73 E-value=1.9e-05 Score=49.40 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++++|++|+|||||++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=2.4e-05 Score=48.74 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
|.-.+.-.++++|++||||||+++.+...
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44444557899999999999999998754
No 223
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.72 E-value=2.4e-05 Score=48.86 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=20.3
Q ss_pred CccceEEEEECCCCCcHHHHHHHHhc
Q 033852 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 3 ~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..+.-.++++|.+|+||||+++.+..
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445689999999999999998754
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.72 E-value=2.9e-05 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++||||||+++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999998764
No 225
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.67 E-value=2.7e-05 Score=48.15 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
++++|++|+|||||++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999874
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.66 E-value=2.9e-05 Score=48.30 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|||||||++.+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999998753
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.63 E-value=2.8e-05 Score=47.58 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.4
Q ss_pred EEEEECCCCCcHHHHHHH
Q 033852 8 KCVTVGDGAVGKTCMLIS 25 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~ 25 (110)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 228
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.62 E-value=3.6e-05 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
|+|.|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999998753
No 229
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.62 E-value=6e-05 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+.-.++++|.+|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 455799999999999999988753
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=4.6e-05 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.++++|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999998764
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.62 E-value=3.6e-05 Score=49.15 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998764
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.61 E-value=3.7e-05 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998753
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.60 E-value=5.4e-05 Score=46.68 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcC
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
|...+...|+++|.+||||||+.+.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455678999999999999999887653
No 234
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.59 E-value=5.8e-05 Score=46.31 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|+......|++.|.+||||||+.+.+..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 6666556799999999999999988764
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.59 E-value=4e-05 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++++|++|+|||||++.+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999875
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=6.3e-05 Score=47.24 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+...+.++|++|+|||||++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45688999999999999998765
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=6.1e-05 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-++++|++||||||+++.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999864
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.52 E-value=6.1e-05 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999987654
No 239
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=7.2e-05 Score=45.10 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 240
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.47 E-value=7.4e-05 Score=46.72 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=21.3
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|+-.+...|++.|.+||||||+++.+..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3333456799999999999999998864
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.47 E-value=7.6e-05 Score=44.88 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.3
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 033852 7 IKCVTVGDGAVGKTCMLISY 26 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~ 26 (110)
.-|++.|.+||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=8e-05 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++++|.+||||||+.+.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 243
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.46 E-value=8.5e-05 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999876
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.45 E-value=7.4e-05 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999987654
No 245
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.45 E-value=8.9e-05 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++|+|.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.45 E-value=8.1e-05 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 247
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.45 E-value=9.1e-05 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++|+|.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.44 E-value=9.6e-05 Score=47.54 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 249
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.40 E-value=0.00012 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+.|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988764
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=9.6e-05 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||+|++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 251
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00011 Score=45.83 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|+|.|.+||||||+++.+..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.00011 Score=46.89 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00013 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.|+++|.+||||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998763
No 254
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.38 E-value=0.00011 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.37 E-value=9.4e-05 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999987654
No 256
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.37 E-value=0.00013 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.36 E-value=0.00011 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999987754
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.35 E-value=0.00014 Score=44.28 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-|++.|.+||||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 259
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.35 E-value=0.00021 Score=44.45 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
....|++.|.+||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999998876
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00011 Score=45.82 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++.++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998764
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999987654
No 262
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.35 E-value=0.00053 Score=45.64 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=34.9
Q ss_pred ccccccCCcccccCCcEEEEEEECCChh-HHHHHHhchhccc
Q 033852 64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKVFNCS 104 (110)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~il~~d~~~~~-s~~~~~~~w~~~~ 104 (110)
++++..+.+.+++++|++++|||++++. +++.+ ++|+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~ 106 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVY 106 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHH
Confidence 6778888888999999999999999986 89887 8888654
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00019 Score=44.68 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
....|++.|.+||||||+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998764
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.34 E-value=0.00012 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999876643
No 265
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.34 E-value=0.00019 Score=43.95 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 266
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.34 E-value=0.00014 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|++|||||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.34 E-value=0.00014 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999997664
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999997654
No 269
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.33 E-value=0.00015 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999997754
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.32 E-value=0.00014 Score=44.51 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.32 E-value=0.00018 Score=45.40 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..+.++|.+||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988754
No 272
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.32 E-value=0.0002 Score=46.12 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...|++.|.+||||||+.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.31 E-value=0.00013 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999976543
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.31 E-value=0.00015 Score=47.49 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
=.++++|+.|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999998765
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.31 E-value=0.00018 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...|++.|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988754
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.31 E-value=0.00021 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
...|++.|.+||||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.30 E-value=0.00014 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999987643
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.30 E-value=0.00013 Score=45.49 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=18.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 033852 6 FIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
.--++++|.+|+||||+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999988765
No 279
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.30 E-value=0.00012 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 280
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.00018 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999887653
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.30 E-value=0.00016 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
=.++|+|++|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999998763
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.30 E-value=0.00015 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999987654
No 283
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00023 Score=44.26 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 284
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.29 E-value=0.00015 Score=49.31 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-+++++|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 285
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.29 E-value=0.00018 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987654
No 286
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.29 E-value=0.00019 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHh
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
.+..|++++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999998853
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.29 E-value=0.00015 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999987754
No 288
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.29 E-value=0.0005 Score=48.33 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=20.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+..-|.|+|.+++|||+|++++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 445688999999999999999975
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.28 E-value=0.00018 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..|++.|.+||||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988753
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.28 E-value=0.00016 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+...|++.|.+||||||+.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999876
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.28 E-value=0.00017 Score=47.28 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.28 E-value=0.00017 Score=46.82 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.27 E-value=0.0002 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.|+++|.+||||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.27 E-value=0.00016 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999997754
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00018 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|.+|+|||||++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998774
No 296
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.27 E-value=0.00016 Score=44.98 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+|+++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998865
No 297
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.27 E-value=0.00022 Score=46.02 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.1
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...+.+.|.|.|.+||||||+.+.+..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999988754
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00017 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999987654
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.27 E-value=0.00018 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999987664
No 300
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.27 E-value=0.00016 Score=45.45 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988764
No 301
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00018 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998764
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.26 E-value=0.00019 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999877543
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.26 E-value=0.00024 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+.+.++|.+||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.25 E-value=0.00012 Score=46.60 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=14.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
-++++|+.|||||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999988
No 305
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.24 E-value=4.2e-05 Score=48.88 Aligned_cols=32 Identities=9% Similarity=-0.069 Sum_probs=22.4
Q ss_pred cCCccccccCCcccccCCcEEEEEEECCChhH
Q 033852 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKAS 92 (110)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s 92 (110)
.+||..++++|+.||.++|++|+|.|.+|++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R 140 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR 140 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCC
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhH
Confidence 45899999999999999999999999998753
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.24 E-value=0.00029 Score=47.25 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.0
Q ss_pred ccceEEEEECCCCCcHHHHHHHHhc
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+..-+.++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999988764
No 307
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.24 E-value=0.00023 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999987654
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00023 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..-|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988754
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00024 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.|++.|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.22 E-value=0.0002 Score=47.69 Aligned_cols=21 Identities=33% Similarity=0.649 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|++|||||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.22 E-value=0.00019 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999997654
No 312
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.22 E-value=0.0002 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999987764
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00023 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.0003 Score=43.12 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988753
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.21 E-value=0.00029 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...-+++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999864
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.20 E-value=0.00015 Score=45.85 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 317
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.20 E-value=0.00024 Score=49.49 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
...+.++|++|+|||||++.+.+-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 447999999999999999999874
No 318
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.20 E-value=0.00029 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+...+.++|.+|+|||||++.+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999987
No 319
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.20 E-value=0.00023 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++++|++|+|||+|++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 320
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00026 Score=44.72 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988754
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.0002 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999987754
No 322
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.17 E-value=0.00037 Score=46.24 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.2
Q ss_pred ccceEEEEECCCCCcHHHHHHHHh
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
.+...|.+.|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999997754
No 323
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.17 E-value=0.00036 Score=43.58 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...+.++|.+|+|||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988763
No 324
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.17 E-value=0.0003 Score=44.66 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988753
No 325
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.17 E-value=0.00036 Score=43.90 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+.|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00033 Score=42.15 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 327
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.00025 Score=46.55 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
+++.|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.16 E-value=0.00025 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987653
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.16 E-value=0.00012 Score=45.04 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+.++|++|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988764
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.16 E-value=0.00035 Score=44.91 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...+.++|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998765
No 331
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00027 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999987653
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.15 E-value=0.00039 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.016 Sum_probs=20.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
..+-+.++|++|||||||++.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999998874
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.15 E-value=0.00027 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999987653
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.14 E-value=0.00038 Score=43.42 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+...++++|.+|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999998753
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.00027 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+|++.|.+||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999988754
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.14 E-value=0.00028 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987654
No 337
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.13 E-value=0.00036 Score=43.45 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=20.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
....|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999988764
No 338
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.13 E-value=0.00022 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 339
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.0003 Score=44.23 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 340
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=7.9e-05 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-.++++|++|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999987653
No 341
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.13 E-value=0.00028 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987653
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.12 E-value=0.0003 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999987653
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.12 E-value=0.00022 Score=47.80 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999887653
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.0005 Score=42.17 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+...+++.|.+|+||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34678999999999999998874
No 345
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.11 E-value=0.00034 Score=44.63 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
|+++|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999999888764
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.10 E-value=0.00033 Score=43.09 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 347
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00018 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|++|+|||+|++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988753
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.10 E-value=0.00037 Score=43.93 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 349
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.08 E-value=0.00034 Score=47.94 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-+.++|+.|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999877643
No 350
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00038 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988753
No 351
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.08 E-value=0.00035 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|||||||.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998753
No 352
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.07 E-value=0.00031 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999987654
No 353
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.07 E-value=0.00025 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999987653
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.00033 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++++|+.|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998764
No 355
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.07 E-value=0.00036 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|++|+|||+|++.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998753
No 356
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00034 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999865
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.07 E-value=0.00043 Score=42.42 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.07 E-value=0.00035 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|+.||||||+++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999876
No 359
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00047 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.00047 Score=42.62 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+...|++.|.+||||||+.+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999998764
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.05 E-value=0.00013 Score=45.63 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998753
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00033 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|+|.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988753
No 363
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.05 E-value=0.00042 Score=42.59 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999988764
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.05 E-value=0.00055 Score=44.31 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
..|.++|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 365
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.00046 Score=44.45 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.03 E-value=0.00048 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=20.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...+.++|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988764
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.00045 Score=41.67 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 368
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00033 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
....++++|.+|+||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998754
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.02 E-value=0.00039 Score=42.84 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988764
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.02 E-value=0.00045 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|++.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00031 Score=42.80 Aligned_cols=22 Identities=23% Similarity=-0.016 Sum_probs=15.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 033852 6 FIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
...|++.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999885
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00044 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
--++++|+.||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.00 E-value=0.00038 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999988753
No 374
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00047 Score=43.73 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998874
No 375
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00047 Score=43.15 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 376
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.00049 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 377
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00047 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988764
No 378
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.98 E-value=0.00055 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999887653
No 379
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.98 E-value=0.00046 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+.--++++|+.|+||||++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988764
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.97 E-value=0.00045 Score=47.32 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.++++|+.|+|||||++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998765
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.96 E-value=0.00025 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987653
No 382
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.96 E-value=0.00042 Score=45.65 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00057 Score=41.76 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988754
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.94 E-value=0.00044 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.++++|+.|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999998764
No 385
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.93 E-value=0.00062 Score=43.39 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
+..-+++.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999988654
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.92 E-value=0.00047 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|+|||||++.+.+--
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987653
No 387
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.92 E-value=0.00035 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999988764
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.91 E-value=0.00085 Score=40.89 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...+++.|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988754
No 389
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.89 E-value=0.00028 Score=46.76 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCCccceEEEEECCCCCcHHHHHHHHhc
Q 033852 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 1 m~~~~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
|+.+. .-|.+.|++||||||+.+.+..
T Consensus 1 Ms~~~-~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKKH-PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTTS-CEEEEESCC---CCTHHHHHHH
T ss_pred CCCCc-eEEEEECCCCCCHHHHHHHHHH
Confidence 65543 4599999999999999988754
No 390
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.89 E-value=0.001 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...-|++.|.+||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999988754
No 391
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.89 E-value=0.00068 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998653
No 392
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.00067 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998865
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00086 Score=44.14 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+.+.|+|.|.+||||||+.+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999876
No 394
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.88 E-value=0.00061 Score=41.55 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998754
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.87 E-value=0.00069 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 033852 6 FIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
..-+++.|.+|+||||+.+.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999998764
No 396
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.00074 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.87 E-value=0.00063 Score=47.39 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++|+|+.|+|||||++.+.+-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 398
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.85 E-value=0.0008 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999997554
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00056 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999998764
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.84 E-value=0.00076 Score=44.39 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 401
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.83 E-value=0.00085 Score=39.72 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
...+++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999987643
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00075 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.--++++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999988764
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.81 E-value=0.00075 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.--++|+|..|||||||++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34688999999999999988764
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.80 E-value=0.001 Score=40.08 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|++.|.+||||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 405
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.0012 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999988764
No 406
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.79 E-value=0.00077 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988764
No 407
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.0008 Score=44.80 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998765
No 408
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.78 E-value=0.00094 Score=46.34 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.9
Q ss_pred ccceEEEEECCCCCcHHHHHHHHh---cCCCCC
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISYT---SNTFPT 33 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~~---~~~~~~ 33 (110)
.+.+|+++||...|||||+++++. .+.|..
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~ 70 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMRILHVNGFNG 70 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHHHHHCCC---
T ss_pred hccceEEEecCCCCchhhHHHHHHHHhCCCCCh
Confidence 468999999999999999998853 445543
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.77 E-value=0.0012 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++|+|++|||||+|...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988763
No 410
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.76 E-value=0.00092 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.76 E-value=0.00076 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.++++|+.|||||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999987643
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00093 Score=43.45 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998764
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.0012 Score=42.63 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 033852 6 FIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
.+.+++.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 414
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.00087 Score=42.53 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877653
No 415
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.74 E-value=0.00095 Score=44.13 Aligned_cols=23 Identities=13% Similarity=-0.096 Sum_probs=19.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
...+++.|++|+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677789999999999998764
No 416
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.73 E-value=0.00094 Score=44.24 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988753
No 417
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.73 E-value=0.00082 Score=45.20 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 418
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.72 E-value=0.0015 Score=42.36 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
..-.+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457999999999999999998653
No 419
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.69 E-value=0.0011 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 420
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.68 E-value=0.00096 Score=43.62 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.68 E-value=0.001 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68899999999999999988764
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.67 E-value=0.0011 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.028 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998764
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.65 E-value=0.0013 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.64 E-value=0.0012 Score=46.89 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+.++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998764
No 425
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.64 E-value=0.0012 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..-|+++|.+||||||+.+++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999864
No 426
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0012 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999987653
No 427
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.00096 Score=44.73 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033852 9 CVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~ 28 (110)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998766
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.63 E-value=0.0011 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999987654
No 429
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.63 E-value=0.0013 Score=43.70 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++|.|+.|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 430
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.00012 Score=48.83 Aligned_cols=33 Identities=9% Similarity=-0.089 Sum_probs=27.9
Q ss_pred cCCccccccCCcccccCCcEEEEEEECCChhHH
Q 033852 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93 (110)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~ 93 (110)
.+||+..+++|+.||.++|++|+|.|.+|++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRl 226 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRH 226 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHH
Confidence 578999999999999999999999999998643
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.63 E-value=0.001 Score=42.26 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999988777653
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.62 E-value=0.0013 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999997764
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.60 E-value=0.00076 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-++++|..|+|||||++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999998653
No 434
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.59 E-value=0.0015 Score=43.62 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998653
No 435
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.0016 Score=43.64 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999998753
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.57 E-value=0.0018 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033852 9 CVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~ 27 (110)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998865
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.57 E-value=0.0022 Score=39.70 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.56 E-value=0.0019 Score=43.87 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988764
No 439
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0015 Score=43.65 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999887643
No 440
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.55 E-value=0.0012 Score=44.41 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 441
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0012 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998765
No 442
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.53 E-value=0.0013 Score=43.71 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999988753
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.53 E-value=0.0021 Score=41.00 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
+...|.++|.+|+||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 444
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.52 E-value=0.0017 Score=40.29 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033852 9 CVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~ 29 (110)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.52 E-value=0.0024 Score=40.88 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=20.3
Q ss_pred CCccceEEEEECCCCCcHHHHHHHHh
Q 033852 2 SASRFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 2 ~~~~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
...+..-|++.|.+|+||||+++.+.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 33456678999999999999998865
No 446
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.50 E-value=0.0017 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999998643
No 447
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.49 E-value=0.0015 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 448
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.47 E-value=0.00068 Score=43.83 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998864
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0017 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999998764
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.46 E-value=0.003 Score=43.20 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
...+++++|.+|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34579999999999999997654
No 451
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.46 E-value=0.002 Score=41.65 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3468999999999999999987643
No 452
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.46 E-value=0.0023 Score=41.16 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHhc
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-+++.++|.+||||||+.+++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0019 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999998764
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.45 E-value=0.0019 Score=40.85 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
...++++|++|+|||+|...+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987654
No 455
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.0021 Score=42.84 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988754
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.45 E-value=0.0027 Score=39.62 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-..|.+.|..||||||+.+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999888653
No 457
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.44 E-value=0.0019 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998764
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.43 E-value=0.00089 Score=39.56 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
...+++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346899999999999999887654
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.43 E-value=0.0012 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999987654
No 460
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.42 E-value=0.0014 Score=43.65 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998765
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.42 E-value=0.0023 Score=43.46 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-|+|+|+.|||||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.42 E-value=0.0018 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-+.++|++|+|||+|+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0024 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++-|+||+|||+|++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 464
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.40 E-value=0.0021 Score=43.61 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988753
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.002 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 466
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.0018 Score=43.67 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||++++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.38 E-value=0.0014 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999887653
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.38 E-value=0.0012 Score=47.59 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+.++|+.|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 688999999999999987554
No 469
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.37 E-value=0.0021 Score=46.14 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.37 E-value=0.0023 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
--++++|++|+||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3588999999999999987653
No 471
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.0019 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033852 7 IKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~ 27 (110)
-.++++|..|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999988765
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.37 E-value=0.0018 Score=46.09 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033852 9 CVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~ 27 (110)
++++|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 473
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0025 Score=44.62 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.+++-|+||+|||+|++.+.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.37 E-value=0.0025 Score=43.19 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.-.+++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998653
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.36 E-value=0.0024 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999987643
No 476
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.35 E-value=0.0024 Score=43.29 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++.|++|+|||++++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 477
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0026 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.35 E-value=0.0026 Score=42.86 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-++|.|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999998643
No 479
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.34 E-value=0.0022 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998765
No 480
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0028 Score=40.20 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.3
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
=+++.|++|+|||+|+..++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36889999999999998765
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0028 Score=44.45 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++-|+||+|||+|++.+.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999875
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.32 E-value=0.0019 Score=41.84 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
..-|++.|..||||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988764
No 483
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.31 E-value=0.0027 Score=43.37 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033852 9 CVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~ 27 (110)
.+++|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.31 E-value=0.0017 Score=46.93 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+.++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999876543
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.31 E-value=0.0026 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
.+.++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 486
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.30 E-value=0.0022 Score=44.43 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033852 8 KCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~ 27 (110)
-+.|+|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999875
No 487
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.27 E-value=0.0045 Score=39.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.3
Q ss_pred ccceEEEEECCCCCcHHHHHHHH
Q 033852 4 SRFIKCVTVGDGAVGKTCMLISY 26 (110)
Q Consensus 4 ~~~~ki~vlG~~~~GKtsl~~~~ 26 (110)
+.++++++.|.+|||||+++-.+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999985443
No 488
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.26 E-value=0.0031 Score=43.14 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033852 7 IKCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
-.+++.|++|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998653
No 489
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.26 E-value=0.0027 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.+++.|++|+|||+|++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999998753
No 490
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.25 E-value=0.0038 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHh
Q 033852 5 RFIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 5 ~~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
+...|+++|.+||||||++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35579999999999999999987
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.24 E-value=0.0033 Score=38.95 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~~~ 30 (110)
-.-+++.|++|+||||+.-.+....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3468999999999999999887653
No 492
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.23 E-value=0.0029 Score=44.81 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033852 8 KCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.+++.|++|+|||+|++.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.23 E-value=0.0032 Score=42.32 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
--++|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3478899999999999998864
No 494
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0031 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033852 9 CVTVGDGAVGKTCMLISYTSNT 30 (110)
Q Consensus 9 i~vlG~~~~GKtsl~~~~~~~~ 30 (110)
+.++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999987653
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.21 E-value=0.0033 Score=39.81 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHh
Q 033852 6 FIKCVTVGDGAVGKTCMLISYT 27 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~ 27 (110)
..-|++.|.+|+||||+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3568899999999999998874
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.21 E-value=0.0029 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSN 29 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~ 29 (110)
.++++|++|+|||+|++.+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.20 E-value=0.0038 Score=39.83 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-|++-|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.20 E-value=0.0037 Score=47.90 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033852 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (110)
Q Consensus 8 ki~vlG~~~~GKtsl~~~~~~~~~ 31 (110)
.+.++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999987654
No 499
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.20 E-value=0.0018 Score=42.84 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033852 7 IKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 7 ~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
-.+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998754
No 500
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0032 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHhc
Q 033852 6 FIKCVTVGDGAVGKTCMLISYTS 28 (110)
Q Consensus 6 ~~ki~vlG~~~~GKtsl~~~~~~ 28 (110)
.-.+++-|+||+|||.|++.+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
Done!