Query 033853
Match_columns 110
No_of_seqs 27 out of 29
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 11:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whx_A Hypothetical protein ri 97.7 2.9E-05 9.8E-10 51.2 3.1 28 2-29 57-84 (111)
2 3md1_A Nuclear and cytoplasmic 97.4 7.8E-05 2.7E-09 45.1 2.8 28 2-29 54-81 (83)
3 3bs9_A Nucleolysin TIA-1 isofo 97.3 0.00011 3.7E-09 44.9 2.5 28 2-29 59-86 (87)
4 2dnz_A Probable RNA-binding pr 97.3 0.00017 5.8E-09 44.8 3.2 29 2-30 58-86 (95)
5 2d9p_A Polyadenylate-binding p 97.3 0.00019 6.6E-09 45.4 3.2 28 2-29 66-93 (103)
6 2cpi_A CCR4-NOT transcription 97.3 0.00016 5.6E-09 47.1 2.9 29 2-30 74-102 (111)
7 2dgx_A KIAA0430 protein; RRM d 97.2 0.00022 7.4E-09 45.3 3.1 28 2-29 63-90 (96)
8 2cqb_A Peptidyl-prolyl CIS-tra 97.2 0.00022 7.5E-09 44.9 3.1 28 2-29 65-92 (102)
9 3s6e_A RNA-binding protein 39; 97.2 0.00017 5.9E-09 49.3 2.7 31 2-32 66-97 (114)
10 1x5t_A Splicing factor 3B subu 97.2 0.0002 6.8E-09 44.5 2.7 28 2-29 59-86 (96)
11 1whw_A Hypothetical protein ri 97.2 0.00029 1E-08 44.1 3.4 28 2-29 61-88 (99)
12 2cpj_A Non-POU domain-containi 97.2 0.00026 8.7E-09 44.7 3.2 28 2-29 62-89 (99)
13 2dnm_A SRP46 splicing factor; 97.2 0.00025 8.5E-09 44.9 3.0 28 2-29 66-93 (103)
14 2dgo_A Cytotoxic granule-assoc 97.2 0.00022 7.7E-09 45.9 2.8 28 2-29 68-95 (115)
15 2dnh_A Bruno-like 5, RNA bindi 97.2 0.00029 1E-08 44.6 3.2 28 2-29 67-97 (105)
16 4f02_A Polyadenylate-binding p 97.2 0.00023 7.7E-09 50.6 2.9 28 2-29 154-181 (213)
17 2e44_A Insulin-like growth fac 97.2 0.00031 1.1E-08 43.8 3.2 28 2-29 65-92 (96)
18 2cpe_A RNA-binding protein EWS 97.2 0.00023 7.8E-09 45.8 2.7 28 2-29 76-103 (113)
19 2cqi_A Nucleolysin TIAR; RNA r 97.1 0.00031 1E-08 44.5 3.1 28 2-29 66-93 (103)
20 1why_A Hypothetical protein ri 97.1 0.00034 1.1E-08 44.0 3.2 28 2-29 64-93 (97)
21 2dnq_A RNA-binding protein 4B; 97.1 0.00033 1.1E-08 43.5 3.1 28 2-29 53-80 (90)
22 2dnp_A RNA-binding protein 14; 97.1 0.00028 9.7E-09 43.8 2.8 28 2-29 54-81 (90)
23 2fc8_A NCL protein; structure 97.1 0.00028 9.5E-09 44.5 2.8 28 2-29 65-92 (102)
24 1nu4_A U1A RNA binding domain; 97.1 0.0003 1E-08 43.8 2.8 30 2-31 62-91 (97)
25 2x1f_A MRNA 3'-END-processing 97.1 0.0003 1E-08 44.2 2.8 28 2-29 55-82 (96)
26 1fjc_A Nucleolin RBD2, protein 97.1 0.00032 1.1E-08 43.8 2.9 28 2-29 64-91 (96)
27 1x5u_A Splicing factor 3B subu 97.1 0.00036 1.2E-08 44.2 3.2 28 2-29 68-95 (105)
28 1wg1_A KIAA1579 protein, homol 97.1 0.00036 1.2E-08 43.4 3.1 29 2-30 51-79 (88)
29 2cqh_A IGF-II mRNA-binding pro 97.1 0.00031 1.1E-08 43.7 2.8 28 2-29 55-83 (93)
30 1x5p_A Negative elongation fac 97.1 0.00034 1.1E-08 44.2 3.0 28 2-29 60-87 (97)
31 2fc9_A NCL protein; structure 97.1 0.00036 1.2E-08 44.0 3.1 28 2-29 64-91 (101)
32 2cq3_A RNA-binding protein 9; 97.1 0.00032 1.1E-08 44.4 2.8 28 2-29 66-93 (103)
33 1x4g_A Nucleolysin TIAR; struc 97.1 0.0003 1E-08 45.3 2.7 28 2-29 72-99 (109)
34 4f25_A Polyadenylate-binding p 97.1 0.00031 1.1E-08 46.1 2.8 28 2-29 56-83 (115)
35 2cph_A RNA binding motif prote 97.1 0.00041 1.4E-08 43.9 3.3 28 2-29 69-97 (107)
36 2cpx_A Hypothetical protein FL 97.1 0.00039 1.3E-08 44.6 3.2 28 2-29 78-105 (115)
37 2dgu_A Heterogeneous nuclear r 97.1 0.00039 1.3E-08 44.3 3.1 28 2-29 56-83 (103)
38 4a8x_A RNA-binding protein wit 97.1 0.00032 1.1E-08 42.7 2.6 28 2-29 58-85 (88)
39 2cpf_A RNA binding motif prote 97.1 0.00031 1.1E-08 43.9 2.6 28 2-29 61-88 (98)
40 1x4a_A Splicing factor, argini 97.1 0.00032 1.1E-08 44.9 2.7 28 2-29 72-99 (109)
41 2cq0_A Eukaryotic translation 97.1 0.00035 1.2E-08 44.2 2.8 28 2-29 68-95 (103)
42 2a3j_A U1 small nuclear ribonu 97.1 0.00036 1.2E-08 48.1 3.1 29 2-30 83-111 (127)
43 1x5s_A Cold-inducible RNA-bind 97.1 0.00035 1.2E-08 44.0 2.8 29 2-30 65-93 (102)
44 2dgt_A RNA-binding protein 30; 97.0 0.00043 1.5E-08 43.1 3.1 28 2-29 55-82 (92)
45 3p5t_L Cleavage and polyadenyl 97.0 0.0003 1E-08 44.0 2.4 28 2-29 56-83 (90)
46 1p1t_A Cleavage stimulation fa 97.0 0.00045 1.5E-08 43.5 3.2 28 2-29 61-88 (104)
47 3ns6_A Eukaryotic translation 97.0 0.00034 1.2E-08 44.9 2.7 28 2-29 65-93 (100)
48 2cpd_A Apobec-1 stimulating pr 97.0 0.00042 1.4E-08 43.7 3.0 29 2-30 62-90 (99)
49 2dgv_A HnRNP M, heterogeneous 97.0 0.00032 1.1E-08 43.3 2.3 28 2-29 59-86 (92)
50 2cpz_A CUG triplet repeat RNA- 97.0 0.00036 1.2E-08 45.1 2.7 28 2-29 78-105 (115)
51 2pe8_A Splicing factor 45; RRM 97.0 0.00032 1.1E-08 46.7 2.4 28 2-29 67-94 (105)
52 2kvi_A Nuclear polyadenylated 97.0 0.00034 1.2E-08 44.2 2.4 29 2-30 56-84 (96)
53 2dit_A HIV TAT specific factor 97.0 0.00039 1.3E-08 45.5 2.7 28 2-29 75-102 (112)
54 2wbr_A GW182, gawky, LD47780P; 97.0 0.00042 1.4E-08 47.3 2.8 28 2-29 54-81 (89)
55 1fj7_A Nucleolin RBD1, protein 97.0 0.00052 1.8E-08 43.3 2.9 27 2-29 69-95 (101)
56 3s8s_A Histone-lysine N-methyl 97.0 0.00046 1.6E-08 45.8 2.8 28 2-29 59-86 (110)
57 2dgw_A Probable RNA-binding pr 97.0 0.00047 1.6E-08 42.7 2.7 27 2-29 61-87 (91)
58 2hvz_A Splicing factor, argini 96.9 0.00044 1.5E-08 43.6 2.4 29 2-30 48-76 (101)
59 3u1l_A PRE-mRNA-splicing facto 96.9 0.00045 1.6E-08 53.2 3.0 28 2-29 190-229 (240)
60 2fy1_A RNA-binding motif prote 96.9 0.00062 2.1E-08 45.0 3.2 30 2-31 59-88 (116)
61 2kn4_A Immunoglobulin G-bindin 96.9 0.00066 2.3E-08 45.8 3.1 28 2-29 123-150 (158)
62 2dgp_A Bruno-like 4, RNA bindi 96.9 0.00067 2.3E-08 42.9 3.0 29 2-30 66-97 (106)
63 3v4m_A Splicing factor U2AF 65 96.9 0.00043 1.5E-08 46.0 2.1 28 2-29 70-97 (105)
64 2dgs_A DAZ-associated protein 96.9 0.00076 2.6E-08 42.4 3.1 27 2-29 63-89 (99)
65 3ex7_B RNA-binding protein 8A; 96.8 0.00075 2.6E-08 44.1 3.1 28 2-29 75-102 (126)
66 1x4c_A Splicing factor, argini 96.8 0.00069 2.4E-08 43.7 2.9 28 2-29 61-93 (108)
67 3lqv_A PRE-mRNA branch site pr 96.8 0.00074 2.5E-08 43.5 3.0 28 2-29 58-85 (115)
68 1u6f_A Tcubp1, RNA-binding pro 96.8 0.0009 3.1E-08 44.4 3.5 28 2-29 95-122 (139)
69 2kt5_A RNA and export factor-b 96.8 0.00088 3E-08 43.9 3.2 29 2-30 87-115 (124)
70 1x4h_A RNA-binding protein 28; 96.8 0.001 3.4E-08 42.3 3.3 28 2-29 68-101 (111)
71 2dhg_A TRNA selenocysteine ass 96.7 0.00058 2E-08 43.1 1.8 28 2-29 62-90 (104)
72 2do0_A HnRNP M, heterogeneous 96.7 0.00094 3.2E-08 42.8 2.8 28 2-29 67-94 (114)
73 2mss_A Protein (musashi1); RNA 96.7 0.00068 2.3E-08 40.5 2.0 24 2-26 52-75 (75)
74 1wel_A RNA-binding protein 12; 96.7 0.00083 2.8E-08 44.3 2.5 27 2-29 78-104 (124)
75 1wf1_A RNA-binding protein RAL 96.7 0.00081 2.8E-08 43.2 2.4 28 2-29 73-100 (110)
76 3egn_A RNA-binding protein 40; 96.7 0.0011 3.8E-08 44.4 2.9 28 2-29 103-130 (143)
77 2ki2_A SS-DNA binding protein 96.6 0.00083 2.9E-08 41.3 2.0 27 4-30 55-81 (90)
78 2bz2_A Negative elongation fac 96.6 0.0014 4.6E-08 44.1 3.2 28 2-29 84-111 (121)
79 2lea_A Serine/arginine-rich sp 96.6 0.00098 3.4E-08 45.3 2.5 30 2-31 100-129 (135)
80 3ucg_A Polyadenylate-binding p 96.6 0.0012 4E-08 40.3 2.3 27 2-29 59-85 (89)
81 1h2v_Z 20 kDa nuclear CAP bind 96.6 0.0012 4.1E-08 44.9 2.5 28 2-29 92-119 (156)
82 2lxi_A RNA-binding protein 10; 96.5 0.0014 4.7E-08 41.6 2.6 28 2-29 55-83 (91)
83 2dis_A Unnamed protein product 96.5 0.0013 4.4E-08 41.8 2.4 28 2-29 63-92 (109)
84 2lcw_A RNA-binding protein FUS 95.5 0.00043 1.5E-08 44.9 0.0 28 2-29 68-95 (116)
85 1rk8_A CG8781-PA, CG8781-PA pr 96.4 0.0016 5.6E-08 44.9 2.7 28 2-29 125-152 (165)
86 2div_A TRNA selenocysteine ass 96.4 0.0018 6E-08 40.5 2.5 28 2-29 63-94 (99)
87 2dng_A Eukaryotic translation 96.4 0.0016 5.3E-08 41.3 2.3 27 2-29 67-93 (103)
88 3n9u_C Cleavage and polyadenyl 96.4 0.0015 5.3E-08 45.8 2.5 30 2-31 110-139 (156)
89 3ue2_A Poly(U)-binding-splicin 96.4 0.0017 6E-08 44.3 2.4 28 2-29 82-109 (118)
90 1wi8_A EIF-4B, eukaryotic tran 96.3 0.0023 7.9E-08 40.5 2.7 27 2-29 68-94 (104)
91 2qfj_A FBP-interacting repress 96.3 0.0028 9.5E-08 43.4 3.3 28 2-29 178-205 (216)
92 2cq4_A RNA binding motif prote 96.3 0.0016 5.6E-08 41.9 1.9 27 2-29 78-104 (114)
93 2diu_A KIAA0430 protein; struc 96.3 0.0026 8.9E-08 44.2 3.0 30 2-31 57-86 (96)
94 2e5g_A U6 snRNA-specific termi 96.3 0.00095 3.3E-08 41.8 0.7 27 2-29 56-82 (94)
95 3tyt_A Heterogeneous nuclear r 96.1 0.003 1E-07 45.6 2.8 28 2-29 53-80 (205)
96 3smz_A Protein raver-1, ribonu 96.1 0.0031 1E-07 45.7 2.8 28 2-29 237-264 (284)
97 2cqd_A RNA-binding region cont 96.1 0.0023 7.9E-08 41.3 1.9 27 2-29 70-96 (116)
98 1uaw_A Mouse-musashi-1; RNP-ty 96.1 0.0041 1.4E-07 36.9 2.7 24 2-26 53-76 (77)
99 2f3j_A RNA and export factor b 96.0 0.0043 1.5E-07 44.2 3.0 28 2-29 140-167 (177)
100 2lmi_A GRSF-1, G-rich sequence 96.0 0.0027 9.3E-08 40.9 1.7 27 2-29 66-92 (107)
101 2m2b_A RNA-binding protein 10; 95.9 0.0029 1E-07 42.1 1.9 27 3-29 78-108 (131)
102 2jwn_A Embryonic polyadenylate 95.9 0.0042 1.4E-07 40.3 2.5 28 2-30 89-116 (124)
103 3pgw_A U1-A; protein-RNA compl 95.9 0.0049 1.7E-07 44.6 3.0 28 2-29 63-90 (282)
104 3q2s_C Cleavage and polyadenyl 95.9 0.0032 1.1E-07 46.6 2.0 30 2-31 123-152 (229)
105 1fje_B Nucleolin RBD12, protei 95.9 0.0056 1.9E-07 40.8 3.0 43 2-47 65-107 (175)
106 3md3_A Nuclear and cytoplasmic 95.8 0.0043 1.5E-07 40.3 2.1 29 2-30 52-80 (166)
107 1b7f_A Protein (SXL-lethal pro 95.7 0.0064 2.2E-07 39.9 2.8 28 2-29 56-83 (168)
108 1sjr_A Polypyrimidine tract-bi 95.7 0.0069 2.4E-07 44.6 3.2 29 2-30 95-125 (164)
109 2db1_A Heterogeneous nuclear r 95.6 0.0059 2E-07 40.3 2.4 27 2-29 72-98 (118)
110 1qm9_A Polypyrimidine tract-bi 95.6 0.0084 2.9E-07 41.0 3.1 28 2-29 52-79 (198)
111 1fxl_A Paraneoplastic encephal 95.5 0.0086 2.9E-07 38.9 2.8 29 2-30 55-83 (167)
112 2cpy_A RNA-binding protein 12; 95.5 0.0055 1.9E-07 39.9 1.8 28 2-30 68-95 (114)
113 2cq2_A Hypothetical protein LO 95.4 0.0065 2.2E-07 42.0 2.1 28 2-29 74-106 (114)
114 2adc_A Polypyrimidine tract-bi 95.4 0.01 3.5E-07 42.4 3.1 28 2-29 83-110 (229)
115 2cq1_A PTB-like protein L; RRM 95.4 0.01 3.5E-07 39.2 2.8 30 2-31 62-93 (101)
116 1x4d_A Matrin 3; structural ge 95.3 0.0066 2.2E-07 40.6 1.8 28 2-29 63-92 (102)
117 2dh8_A DAZ-associated protein 95.2 0.0074 2.5E-07 38.1 1.7 27 2-29 69-95 (105)
118 3dxb_A Thioredoxin N-terminall 95.1 0.012 4.2E-07 41.8 2.8 28 2-29 186-213 (222)
119 1wex_A Hypothetical protein (r 95.0 0.013 4.3E-07 38.8 2.5 29 2-30 62-92 (104)
120 2hgl_A HNRPF protein, heteroge 95.0 0.012 4E-07 41.0 2.4 27 2-29 99-125 (136)
121 2yh0_A Splicing factor U2AF 65 95.0 0.013 4.5E-07 39.5 2.5 27 2-29 62-88 (198)
122 3smz_A Protein raver-1, ribonu 94.9 0.015 5.2E-07 42.0 2.8 29 2-30 148-176 (284)
123 1s79_A Lupus LA protein; RRM, 94.9 0.0099 3.4E-07 38.9 1.6 29 2-31 63-91 (103)
124 1x4b_A Heterogeneous nuclear r 94.9 0.013 4.5E-07 37.7 2.1 27 2-29 80-106 (116)
125 1sjq_A Polypyrimidine tract-bi 94.7 0.011 3.7E-07 40.3 1.5 31 2-32 63-95 (105)
126 2e5i_A Heterogeneous nuclear r 94.7 0.023 7.9E-07 39.4 3.1 30 2-31 73-104 (124)
127 2qfj_A FBP-interacting repress 94.6 0.022 7.5E-07 38.9 2.9 28 2-29 81-108 (216)
128 3pgw_S U1-70K; protein-RNA com 94.6 0.017 6E-07 46.8 2.8 28 2-29 155-182 (437)
129 2d9o_A DNAJ (HSP40) homolog, s 94.6 0.021 7.2E-07 38.0 2.7 26 2-29 65-90 (100)
130 1iqt_A AUF1, heterogeneous nuc 94.5 0.017 5.7E-07 34.1 1.9 24 2-26 52-75 (75)
131 2ghp_A U4/U6 snRNA-associated 94.4 0.024 8.3E-07 41.1 2.8 28 2-29 170-197 (292)
132 2ad9_A Polypyrimidine tract-bi 94.4 0.027 9.1E-07 38.9 2.9 30 2-31 78-109 (119)
133 3zzy_A Polypyrimidine tract-bi 94.3 0.025 8.6E-07 39.9 2.7 30 2-31 77-108 (130)
134 1wez_A HnRNP H', FTP-3, hetero 94.2 0.028 9.5E-07 36.4 2.6 27 2-29 66-92 (102)
135 3sde_A Paraspeckle component 1 94.2 0.028 9.6E-07 41.0 2.8 28 2-29 69-96 (261)
136 4f02_A Polyadenylate-binding p 94.2 0.034 1.1E-06 39.3 3.1 30 2-31 68-97 (213)
137 2dnn_A RNA-binding protein 12; 94.0 0.034 1.2E-06 37.1 2.7 27 2-29 67-93 (109)
138 1x4f_A Matrin 3; structural ge 93.9 0.029 9.8E-07 38.4 2.2 28 2-29 73-102 (112)
139 2cqg_A TDP-43, TAR DNA-binding 93.8 0.043 1.5E-06 34.4 2.8 26 2-29 68-93 (103)
140 3beg_B Splicing factor, argini 93.7 0.054 1.8E-06 35.4 3.2 24 2-25 62-85 (115)
141 1wg5_A Heterogeneous nuclear r 93.7 0.035 1.2E-06 35.5 2.2 27 2-29 68-94 (104)
142 2g4b_A Splicing factor U2AF 65 93.6 0.034 1.2E-06 36.6 2.1 27 2-29 62-88 (172)
143 1l3k_A Heterogeneous nuclear r 93.6 0.038 1.3E-06 37.1 2.4 27 2-29 157-183 (196)
144 1x4e_A RNA binding motif, sing 93.4 0.011 3.8E-07 35.8 -0.4 26 2-27 58-83 (85)
145 3sde_A Paraspeckle component 1 93.2 0.057 1.9E-06 39.4 3.0 28 2-29 148-179 (261)
146 2dnr_A Synaptojanin-1; RRM dom 92.6 0.048 1.7E-06 37.3 1.7 28 2-30 60-87 (91)
147 2hgn_A Heterogeneous nuclear r 90.4 0.089 3.1E-06 36.7 1.3 27 2-29 97-123 (139)
148 3nmr_A Cugbp ELAV-like family 90.1 0.24 8.1E-06 32.3 3.1 29 2-30 58-89 (175)
149 2ghp_A U4/U6 snRNA-associated 88.6 0.2 7E-06 36.2 2.0 27 2-29 92-118 (292)
150 1l3k_A Heterogeneous nuclear r 88.4 0.29 1E-05 32.7 2.6 27 2-29 66-92 (196)
151 1x5o_A RNA binding motif, sing 88.3 0.18 6.1E-06 32.0 1.4 15 2-16 77-91 (114)
152 2dha_A FLJ20171 protein; RRM d 87.8 0.19 6.5E-06 34.2 1.4 27 2-29 79-105 (123)
153 2i2y_A Fusion protein consists 86.6 0.16 5.4E-06 34.0 0.4 27 2-29 24-51 (150)
154 2xs2_A Deleted in azoospermia- 83.0 0.3 1E-05 30.3 0.5 26 2-29 61-86 (102)
155 2nlw_A Eukaryotic translation 77.6 1.2 4E-05 28.2 1.9 21 2-22 72-92 (105)
156 3tht_A Alkylated DNA repair pr 73.4 2.3 7.9E-05 34.1 3.0 28 2-29 67-99 (345)
157 2dnl_A Cytoplasmic polyadenyla 70.9 2.9 9.8E-05 26.8 2.5 24 2-27 63-86 (114)
158 4gif_A Polycystic kidney disea 64.4 3.9 0.00014 25.1 2.1 18 60-77 26-43 (45)
159 3ljm_A Coil Ser L9C; de novo d 64.4 5 0.00017 23.0 2.3 15 62-76 8-22 (31)
160 2j8a_A Histone-lysine N-methyl 64.1 4.1 0.00014 29.7 2.5 29 4-32 69-99 (136)
161 2l5g_B Putative uncharacterize 60.8 6.6 0.00022 24.0 2.6 20 60-79 21-40 (42)
162 2cjk_A Nuclear polyadenylated 58.8 4.5 0.00015 26.1 1.7 26 2-29 56-81 (167)
163 1wf0_A TDP-43, TAR DNA-binding 57.6 6.3 0.00022 23.6 2.1 21 9-29 56-78 (88)
164 3d2w_A TAR DNA-binding protein 52.1 6.3 0.00021 24.4 1.5 20 10-29 63-84 (89)
165 3ra3_A P1C; coiled coil domain 47.4 12 0.00042 20.9 2.1 15 61-75 13-27 (28)
166 3hrn_A Transient receptor pote 35.1 27 0.00092 22.9 2.5 19 60-78 25-43 (64)
167 1bb1_B Designed, thermostable 33.8 31 0.001 20.3 2.4 16 62-77 2-17 (36)
168 2lkz_A RNA-binding protein 5; 33.2 17 0.00058 23.1 1.3 13 2-14 64-76 (95)
169 2g0c_A ATP-dependent RNA helic 31.0 24 0.00084 21.2 1.7 25 3-27 51-75 (76)
170 4g1a_A AQ-C16C19 peptide; heli 28.1 26 0.0009 20.1 1.4 14 64-77 2-15 (32)
171 3n5l_A Binding protein compone 27.6 43 0.0015 24.8 2.9 23 57-79 277-299 (310)
172 3p7i_A PHND, subunit of alkylp 24.8 51 0.0017 24.8 2.9 23 57-79 286-308 (321)
173 1q0v_A Hydrophilic protein; ha 24.4 41 0.0014 22.7 2.0 17 62-78 57-73 (81)
174 1owx_A Lupus LA protein, SS-B, 24.4 71 0.0024 22.0 3.4 28 2-29 67-96 (121)
175 1g6u_A Domain swapped dimer; d 21.8 54 0.0019 20.2 2.1 13 62-74 34-46 (48)
176 2v3g_A Endoglucanase H; beta-1 21.2 39 0.0013 25.7 1.6 13 18-30 99-111 (283)
177 2kke_A Uncharacterized protein 21.1 34 0.0012 21.5 1.1 40 12-68 7-46 (53)
No 1
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=2.9e-05 Score=51.17 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=26.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.||...
T Consensus 57 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 57 LEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999987
No 2
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.44 E-value=7.8e-05 Score=45.14 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||..+
T Consensus 54 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 54 DDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999865
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=44.87 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=25.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||....|++|.|+||..+
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 59 WDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 6899999999999999999999999764
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00017 Score=44.78 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.||+|.|+||..+.
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 58 ECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 68999999999999999999999998873
No 5
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.27 E-value=0.00019 Score=45.44 Aligned_cols=28 Identities=43% Similarity=0.629 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 66 EEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 6899999999999999999999999876
No 6
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.00016 Score=47.06 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||....||+|.|.||..++
T Consensus 74 ~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 74 EDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 68999999999999999999999999875
No 7
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00022 Score=45.26 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||...
T Consensus 63 ~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 63 QDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999765
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.00022 Score=44.94 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 65 EDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 6899999999999999999999999877
No 9
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.21 E-value=0.00017 Score=49.25 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc-cch
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK-YLE 32 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek-~~~ 32 (110)
++|+.|++.|||+...||+|.|.|+.+. |..
T Consensus 66 e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 66 AAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 6899999999999999999999999888 443
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.0002 Score=44.54 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 59 DASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp HHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 6899999999999999999999999876
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.00029 Score=44.14 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 61 EHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp HHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 6899999999999999999999999887
No 12
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.00026 Score=44.71 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 62 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 62 TLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred HHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 6899999999999999999999999876
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.17 E-value=0.00025 Score=44.90 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 66 RDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp SHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 6899999999999999999999999876
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.17 E-value=0.00022 Score=45.93 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 68 WDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 6899999999999999999999999877
No 15
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.16 E-value=0.00029 Score=44.56 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccC---CceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACG---RPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~g---RpLVVR~A~ek 29 (110)
++|+.|++.|||+.+.| ++|.|+||..+
T Consensus 67 ~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 67 TEAQAAIHALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp HHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred HHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence 68999999999999998 99999999876
No 16
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.16 E-value=0.00023 Score=50.59 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||..+
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 6899999999999999999999999876
No 17
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00031 Score=43.80 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||..+
T Consensus 65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 65 DQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 5799999999999999999999999876
No 18
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00023 Score=45.78 Aligned_cols=28 Identities=39% Similarity=0.351 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 76 PTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred HHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 6899999999999999999999999876
No 19
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.14 E-value=0.00031 Score=44.49 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||...
T Consensus 66 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 66 RDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred HHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 6899999999999999999999999886
No 20
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.00034 Score=44.00 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=26.0
Q ss_pred hHHHHHHHhhcceecc--CCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLAC--GRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~--gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+. |++|.|+||..+
T Consensus 64 ~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 64 DAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred HHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 6899999999999999 999999999864
No 21
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00033 Score=43.51 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 53 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 53 TAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred HHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 6899999999999999999999999876
No 22
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00028 Score=43.80 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 54 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 54 ADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 6899999999999999999999999876
No 23
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00028 Score=44.47 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 65 EDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 6899999999999999999999999875
No 24
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.11 E-value=0.0003 Score=43.81 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||..+.|++|.|.||..+..
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 62 SSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 689999999999999999999999988743
No 25
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.10 E-value=0.0003 Score=44.16 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||..+
T Consensus 55 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 55 ESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 6899999999999999999999999988
No 26
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.10 E-value=0.00032 Score=43.76 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||..+
T Consensus 64 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 64 ADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999876
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.10 E-value=0.00036 Score=44.17 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 68 EDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp HHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred HHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 6899999999999999999999999876
No 28
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.10 E-value=0.00036 Score=43.45 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||+...||+|.|+||....
T Consensus 51 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 51 EQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 68999999999999999999999998873
No 29
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00031 Score=43.70 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcc-eeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHG-RLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnG-KLa~gRpLVVR~A~ek 29 (110)
++|+.|++.||| ....|++|.|+||..+
T Consensus 55 ~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 55 NWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp HHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 689999999999 8999999999999876
No 30
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.00034 Score=44.15 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 60 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 60 ESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp HHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 6899999999999999999999999876
No 31
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00036 Score=43.99 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 64 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 64 EDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 6899999999999999999999999877
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.00032 Score=44.41 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 66 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 66 ADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 6899999999999999999999999887
No 33
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.0003 Score=45.26 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 72 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 72 ESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 6899999999999999999999999886
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.07 E-value=0.00031 Score=46.10 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||..+
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 6899999999999999999999999876
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.00041 Score=43.86 Aligned_cols=28 Identities=36% Similarity=0.448 Sum_probs=26.6
Q ss_pred hHHHHHHHhh-cceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKM-HGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekm-nGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.| ||..+.|++|.|+||..+
T Consensus 69 ~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 69 QDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp HHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred HHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 6899999999 999999999999999877
No 36
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00039 Score=44.63 Aligned_cols=28 Identities=25% Similarity=0.276 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 78 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 78 EIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp HHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 6899999999999999999999999876
No 37
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.06 E-value=0.00039 Score=44.28 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 56 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 56 DGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 6899999999999999999999999877
No 38
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.06 E-value=0.00032 Score=42.65 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||...
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 58 DEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred HHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 6899999999999999999999999754
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00031 Score=43.93 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 61 EQAQKALKQLQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp HHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence 6899999999999999999999999876
No 40
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00032 Score=44.94 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 72 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 72 RDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 6899999999999999999999999876
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00035 Score=44.20 Aligned_cols=28 Identities=21% Similarity=-0.007 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 68 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 68 EDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 6899999999999999999999999876
No 42
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.05 E-value=0.00036 Score=48.09 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=27.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||+...||||.|.||..+.
T Consensus 83 ~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 83 ESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 68999999999999999999999999873
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00035 Score=44.02 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.|++|.|.||..+.
T Consensus 65 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 65 DDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 68999999999999999999999998763
No 44
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.00043 Score=43.14 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 55 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 55 EDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 6899999999999999999999999876
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.05 E-value=0.0003 Score=43.95 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=24.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||....||+|.|++|...
T Consensus 56 ~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 56 ASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp HHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred HHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 6899999999999999999999999875
No 46
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.00045 Score=43.48 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||....|++|.|+||..+
T Consensus 61 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 61 ETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp HHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred HHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 6899999999999999999999999887
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.04 E-value=0.00034 Score=44.88 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcceeccC-CceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACG-RPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~g-RpLVVR~A~ek 29 (110)
++|+.|++.|||+...| |+|.|.||...
T Consensus 65 ~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 65 NDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 68999999999999999 99999999875
No 48
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.00042 Score=43.68 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.|++|.|+||+.+.
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 62 EDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 68999999999999999999999998764
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.02 E-value=0.00032 Score=43.30 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 59 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 59 EVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp HHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 6899999999999999999999999875
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.02 E-value=0.00036 Score=45.10 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||..+
T Consensus 78 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 78 VSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 6899999999999999999999999876
No 51
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.00 E-value=0.00032 Score=46.69 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.||.+.
T Consensus 67 ~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 67 ESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 6899999999999999999999999886
No 52
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00034 Score=44.19 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||....|++|.|+||..+.
T Consensus 56 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 56 QSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 68999999999999999999999998763
No 53
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.00039 Score=45.48 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.||..+
T Consensus 75 ~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 75 EEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 6899999999999999999999999886
No 54
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.98 E-value=0.00042 Score=47.33 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=26.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
+||+.|++.|||..+.||+|.|.+|++-
T Consensus 54 ~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 54 EEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp HHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred HHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 6999999999999999999999999753
No 55
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.96 E-value=0.00052 Score=43.28 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||..+.||+|.|+||..+
T Consensus 69 ~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 69 EDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp HHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred HHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 68999999 9999999999999999875
No 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.95 E-value=0.00046 Score=45.76 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+.+.||+|.|.||...
T Consensus 59 ~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 59 RGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999755
No 57
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.00047 Score=42.71 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||....||+|.|+||+.+
T Consensus 61 ~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 61 EEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp HHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred HHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 68999999 9999999999999999865
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.93 E-value=0.00044 Score=43.62 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=27.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.|++|.|+||..+.
T Consensus 48 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 48 RDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 68999999999999999999999998874
No 59
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.93 E-value=0.00045 Score=53.24 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=24.9
Q ss_pred hHHHHHHHhhcceec------------cCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLA------------CGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa------------~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+.+ .|++|.|+||.+.
T Consensus 190 ~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 190 ANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 689999999999999 8999999999876
No 60
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.91 E-value=0.00062 Score=44.98 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||..+.|++|.|.||.....
T Consensus 59 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 59 ADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 689999999999999999999999987743
No 61
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.88 E-value=0.00066 Score=45.79 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||..+
T Consensus 123 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 123 RDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999865
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.88 E-value=0.00067 Score=42.93 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred hHHHHHHHhhcceec---cCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLA---CGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa---~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||+.. .|++|.|+||..+.
T Consensus 66 ~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 66 ESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 689999999999988 89999999998763
No 63
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.88 E-value=0.00043 Score=45.96 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.++.+.
T Consensus 70 ~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 70 FDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 6899999999999999999999999887
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.00076 Score=42.35 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||..+.|++|.|+||..+
T Consensus 63 ~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 63 QSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp HHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred HHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 68999999 9999999999999999876
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.85 E-value=0.00075 Score=44.09 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 75 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 75 KEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 6899999999999999999999999876
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.00069 Score=43.71 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccC-----CceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACG-----RPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~g-----RpLVVR~A~ek 29 (110)
++|+.|++.|||+.+.| ++|.|.||..+
T Consensus 61 ~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 61 EDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred HHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 68999999999999999 99999999886
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.84 E-value=0.00074 Score=43.46 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||...
T Consensus 58 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 58 FDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp HHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 6899999999999999999999999865
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.83 E-value=0.0009 Score=44.38 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=26.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 95 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 95 SSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp HHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999876
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.81 E-value=0.00088 Score=43.90 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.||+|.|+||....
T Consensus 87 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 87 ADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp HHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 68999999999999999999999998763
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.001 Score=42.30 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=26.5
Q ss_pred hHHHHHHHhhc------ceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMH------GRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmn------GKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|| |..+.|++|.|+||..+
T Consensus 68 ~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 68 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp HHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred HHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 68999999999 99999999999999876
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.00058 Score=43.12 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=26.2
Q ss_pred hHHHHHHHhhccee-ccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRL-ACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKL-a~gRpLVVR~A~ek 29 (110)
++|+.|++.|||.. ..|++|.|+||..+
T Consensus 62 ~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 62 LEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp HHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred HHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 68999999999999 99999999999766
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.00094 Score=42.76 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 67 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 67 IEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred HHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 6899999999999999999999999765
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.72 E-value=0.00068 Score=40.48 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=22.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEec
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLA 26 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A 26 (110)
++|+.|++ |||....||+|.|+||
T Consensus 52 ~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 52 DIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHH-CCCCEECCEEEEEEeC
Confidence 67999998 9999999999999998
No 74
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.00083 Score=44.31 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||....||+|.|.||..+
T Consensus 78 ~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 78 ADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp HHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred HHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 68999999 9999999999999999988
No 75
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.70 E-value=0.00081 Score=43.23 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 73 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 73 RHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999865
No 76
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=44.42 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||...
T Consensus 103 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 103 KAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 6899999999999999999999999765
No 77
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.64 E-value=0.00083 Score=41.35 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHhhcceeccCCceEEEeccccc
Q 033853 4 AKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 4 AElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
|+.|++.|||....||+|.|+||....
T Consensus 55 a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 55 VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999998873
No 78
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.63 E-value=0.0014 Score=44.13 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 84 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 84 ESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 6899999999999999999999999887
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.62 E-value=0.00098 Score=45.33 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=27.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||..+.|++|.|+||.....
T Consensus 100 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 100 RDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 689999999999999999999999987543
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.56 E-value=0.0012 Score=40.33 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=25.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||....|++|.|+||+..
T Consensus 59 ~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 59 ESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred HHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 6899999 99999999999999999764
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.55 E-value=0.0012 Score=44.85 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||...
T Consensus 92 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 92 ADAENAMRYINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp HHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999875
No 82
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=41.63 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred hHHHHHHHhh-cceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKM-HGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekm-nGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.| ||....||+|.|.||..+
T Consensus 55 ~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 55 QDATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp HHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred HHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 7899999998 566789999999999876
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.53 E-value=0.0013 Score=41.82 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.6
Q ss_pred hHHHHHHHhhc--ceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMH--GRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmn--GKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|| |....||+|.|.||..+
T Consensus 63 ~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 63 RAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp HHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred HHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence 68999999996 58999999999999877
No 84
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.50 E-value=0.00043 Score=44.92 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|+||..+
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 6899999999999999999999999876
No 85
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.43 E-value=0.0016 Score=44.93 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 125 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 125 KQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 6899999999999999999999999876
No 86
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=40.52 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcceeccCCc----eEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRP----LVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRp----LVVR~A~ek 29 (110)
++|+.|++.|||....|++ |.|.||...
T Consensus 63 ~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 63 ATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 6899999999999999999 999999764
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.41 E-value=0.0016 Score=41.30 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||..+.||+|.|.||..+
T Consensus 67 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 67 DSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp HHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred HHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 6899999 89999999999999999876
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.41 E-value=0.0015 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||..+.||+|.|+||..+..
T Consensus 110 ~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 110 NSVHKLLELLPGKVLNGEKVDVRPATRQNL 139 (156)
T ss_dssp HHHHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred HHHHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence 689999999999999999999999988743
No 89
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.35 E-value=0.0017 Score=44.35 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.++.+.
T Consensus 82 e~A~~Ai~~LnGr~f~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 82 SETHKAIQALNGRWFAGRKVVAEVYDQE 109 (118)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHHHCCCEECCcEEEEEEcChH
Confidence 6899999999999999999999999876
No 90
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.0023 Score=40.55 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=25.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||..+.||+|.|+||..+
T Consensus 68 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 68 DSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp HHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred HHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 6899999 99999999999999999886
No 91
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.31 E-value=0.0028 Score=43.43 Aligned_cols=28 Identities=25% Similarity=0.017 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+.+.||+|.|+||...
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 6899999999999999999999999876
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.0016 Score=41.90 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||..+.|++|.|+||..+
T Consensus 78 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 78 QSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp GGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred HHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 6899999 99999999999999999876
No 93
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.0026 Score=44.16 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=27.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||.-+.||||.|.+|+.+.+
T Consensus 57 esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 57 DSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred HHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 689999999999999999999999998843
No 94
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.00095 Score=41.80 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=25.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||..+.||+|.|+||.++
T Consensus 56 ~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 56 GAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp HHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred HHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 68999999 9999999999999999766
No 95
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.12 E-value=0.003 Score=45.63 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||....||+|.|.||+.+
T Consensus 53 ~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 53 YAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 6899999999999999999999999865
No 96
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.12 E-value=0.0031 Score=45.71 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|.|.||..+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 6899999999999999999999999877
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.09 E-value=0.0023 Score=41.29 Aligned_cols=27 Identities=26% Similarity=0.127 Sum_probs=24.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.||| ...|++|.|+||...
T Consensus 70 ~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 70 AAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred HHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 689999999999 799999999999765
No 98
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.05 E-value=0.0041 Score=36.90 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=22.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEec
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLA 26 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A 26 (110)
++|+.|++.|| ....||+|.|+||
T Consensus 53 ~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 53 AGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp THHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhCC-CccCCEEEEEEec
Confidence 68999999999 9999999999998
No 99
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.99 E-value=0.0043 Score=44.23 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||...
T Consensus 140 ~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 140 ADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 6899999999999999999999999876
No 100
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.97 E-value=0.0027 Score=40.94 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=25.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||....||+|.|.+|..+
T Consensus 66 ~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 66 QDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp HHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred HHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 68999999 9999999999999999887
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.94 E-value=0.0029 Score=42.12 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHhhcce----eccCCceEEEecccc
Q 033853 3 EAKLAKEKMHGR----LACGRPLVVRLASEK 29 (110)
Q Consensus 3 EAElAkekmnGK----La~gRpLVVR~A~ek 29 (110)
+|+.|++.|||+ .+.||+|.|+||...
T Consensus 78 ~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 78 EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 799999999999 999999999999876
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.91 E-value=0.0042 Score=40.34 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|+ .|||..+.|++|.|.||+...
T Consensus 89 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 89 NSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp HHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 6899999 899999999999999998653
No 103
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.90 E-value=0.0049 Score=44.57 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.||+|.|.||...
T Consensus 63 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 63 SSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred HHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 6899999999999999999999999776
No 104
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.89 E-value=0.0032 Score=46.64 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||+.+.||+|.|+||.....
T Consensus 123 ~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 123 ASSKKLMDLLPKRELHGQNPVVTPVNKQFL 152 (229)
T ss_dssp THHHHHHTTSTTSCBTTBCCEEEECCHHHH
T ss_pred HHHHHHHHHcCCCeECCEEeEEEECCCCcc
Confidence 689999999999999999999999987743
No 105
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.87 E-value=0.0056 Score=40.84 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=31.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccchHHhhcchhhhccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANK 47 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~~~~~~~s~k~l~~~~~ 47 (110)
++|+.|++ |||..+.||+|.|+||..+..... .....|-+..+
T Consensus 65 ~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~--~~~~~l~v~nl 107 (175)
T 1fje_B 65 EDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKV--RAARTLLAKNL 107 (175)
T ss_dssp HHHHHHHH-GGGEEETTEEEEEECCCCSSCSTT--GGGGEEEEESC
T ss_pred HHHHHHHh-cCCCEeCCeEEEEecCCCcccccc--ccCCEEEEeCC
Confidence 68999995 999999999999999987632221 33444544444
No 106
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0043 Score=40.34 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.|++|.|+||....
T Consensus 52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 52 HDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999998763
No 107
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.74 E-value=0.0064 Score=39.89 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 56 MDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 6899999999999999999999999876
No 108
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.72 E-value=0.0069 Score=44.58 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccC--CceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACG--RPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~ 30 (110)
++|+.|++.|||+.+.| ++|.|.||+.+.
T Consensus 95 ~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 95 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 68999999999999976 999999999873
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.64 E-value=0.0059 Score=40.31 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||+.+.||+|.|.+|..+
T Consensus 72 ~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 72 DDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 68999999 9999999999999999877
No 110
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.61 E-value=0.0084 Score=41.02 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||....|++|.|.||...
T Consensus 52 ~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 52 NQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 6899999999999999999999999866
No 111
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.53 E-value=0.0086 Score=38.94 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.|++|.|.|+....
T Consensus 55 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 55 KDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 68999999999999999999999998763
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.49 E-value=0.0055 Score=39.89 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=25.8
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++. ||..+.||+|.|+||..+-
T Consensus 68 ~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 68 DDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 689999998 9999999999999998873
No 113
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.44 E-value=0.0065 Score=42.03 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.6
Q ss_pred hHHHHHHHhhcceec-----cCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLA-----CGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa-----~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+.+ .|+||.|.+|.+.
T Consensus 74 ~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 74 EESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp HHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred HHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 689999999999977 6899999998754
No 114
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.40 E-value=0.01 Score=42.39 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.||..+
T Consensus 83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 83 NQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 6899999999999999999999999866
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.37 E-value=0.01 Score=39.17 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=25.7
Q ss_pred hHHHHHHHhhc--ceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMH--GRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmn--GKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|| |..+.||+|.|.||..+..
T Consensus 62 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 62 EAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp HHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred HHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 68999999874 6789999999999998733
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.34 E-value=0.0066 Score=40.60 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.8
Q ss_pred hHHHHHHHhhcce--eccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGR--LACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGK--La~gRpLVVR~A~ek 29 (110)
++|+.|++.|||. .+.||+|.|.||...
T Consensus 63 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 63 EDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred HHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 6899999999975 489999999999865
No 117
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.22 E-value=0.0074 Score=38.11 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. ||....|++|.|+||..+
T Consensus 69 ~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 69 NCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp THHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred HHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 689999999 999999999999999876
No 118
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.14 E-value=0.012 Score=41.80 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||+...||+|+|.++.+.
T Consensus 186 ~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 186 SETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 6899999999999999999999998865
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.05 E-value=0.013 Score=38.80 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcce--eccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGR--LACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGK--La~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||. .+.||+|.|.||..+.
T Consensus 62 ~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 6899999999875 4899999999998873
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.01 E-value=0.012 Score=40.95 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=25.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||+...||+|.|.+|..+
T Consensus 99 e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 99 DDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 68999999 9999999999999999876
No 121
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.97 E-value=0.013 Score=39.48 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||....|++|.|.||+..
T Consensus 62 ~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred HHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 7899999 89999999999999999876
No 122
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.93 E-value=0.015 Score=42.02 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=26.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||..+.||+|.|.||....
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 68999999999999999999999998773
No 123
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.0099 Score=38.92 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++ |||....||+|.|.|+.+...
T Consensus 63 e~a~~Ai~-~~~~~~~gr~l~V~~~~~~~~ 91 (103)
T 1s79_A 63 ESAKKFVE-TPGQKYKETDLLILFKDDYFA 91 (103)
T ss_dssp HHHHHHHT-SSCCCCTTTTCEEEEHHHHHH
T ss_pred HHHHHHHH-cCCCEECCEEEEEEEchHHHH
Confidence 68999999 999999999999999987543
No 124
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.85 E-value=0.013 Score=37.66 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=25.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. ||..+.||+|.|+||..+
T Consensus 80 ~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 80 AEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred HHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 589999998 999999999999999876
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.70 E-value=0.011 Score=40.30 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.4
Q ss_pred hHHHHHHHhhc--ceeccCCceEEEecccccch
Q 033853 2 QEAKLAKEKMH--GRLACGRPLVVRLASEKYLE 32 (110)
Q Consensus 2 eEAElAkekmn--GKLa~gRpLVVR~A~ek~~~ 32 (110)
++|+.|++.|+ |..+.||||.|.||..+...
T Consensus 63 ~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 63 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 68999999886 47899999999999987443
No 126
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.67 E-value=0.023 Score=39.37 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=26.7
Q ss_pred hHHHHHHHhhcceeccC--CceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACG--RPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~~ 31 (110)
++|+.|++.|||.-+.| ++|.|.||+.+.+
T Consensus 73 ~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 73 LCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 68999999999999988 6999999998843
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.64 E-value=0.022 Score=38.90 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=25.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|.|+...
T Consensus 81 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 81 EAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp HHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred HHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 6899999999999999999999998876
No 128
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.63 E-value=0.017 Score=46.83 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=26.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|+|.||...
T Consensus 155 e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 155 RDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 6899999999999999999999999876
No 129
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.021 Score=37.96 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.++| ..||||.|.||..+
T Consensus 65 ~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 65 KAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp HHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred HHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 689999999888 46999999999876
No 130
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.55 E-value=0.017 Score=34.13 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=22.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEec
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLA 26 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A 26 (110)
++|+.|++. ||....|++|.|+||
T Consensus 52 ~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 52 EPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHHh-CCCeECCEEEEEEEC
Confidence 689999995 899999999999997
No 131
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.38 E-value=0.024 Score=41.10 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=26.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 6899999999999999999999999877
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.38 E-value=0.027 Score=38.91 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=26.1
Q ss_pred hHHHHHHHhhcc--eeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHG--RLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnG--KLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.||| ..+.||+|.|.||..+..
T Consensus 78 e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 78 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred HHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 689999999985 589999999999988733
No 133
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=94.33 E-value=0.025 Score=39.92 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=27.1
Q ss_pred hHHHHHHHhhcceeccC--CceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACG--RPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~~ 31 (110)
++|+.|++.|||+-+.| ++|-|.||+.+.+
T Consensus 77 ~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 77 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 68999999999999998 8999999998733
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.25 E-value=0.028 Score=36.38 Aligned_cols=27 Identities=19% Similarity=0.005 Sum_probs=24.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||+...||+|.|.+|...
T Consensus 66 ~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 66 EDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp HHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred HHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 78999995 7999999999999998754
No 135
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.18 E-value=0.028 Score=41.01 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=26.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.|||..+.|++|.|+||...
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHHHcCCcEECCceeEeeecccC
Confidence 6899999999999999999999999764
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.16 E-value=0.034 Score=39.28 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=27.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL 31 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~ 31 (110)
++|+.|++.|||+...||+|.|.|+.....
T Consensus 68 ~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~ 97 (213)
T 4f02_A 68 ADAERALDTMNFDVIKGKPVRIMWSQRDPS 97 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred HHHHHHHHHhhhhhcCCccccccccccccc
Confidence 689999999999999999999999987733
No 137
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.97 E-value=0.034 Score=37.06 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=25.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||+...||+|.|.+|.+.
T Consensus 67 ~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 67 QDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred HHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 6899999 69999999999999999877
No 138
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.89 E-value=0.029 Score=38.37 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.3
Q ss_pred hHHHHHHHhhcc--eeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHG--RLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnG--KLa~gRpLVVR~A~ek 29 (110)
++|+.|++.||| ..+.||+|.|.||..+
T Consensus 73 ~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 73 EDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 689999999875 5689999999999766
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.84 E-value=0.043 Score=34.39 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ +|..+.|++|.|+||..+
T Consensus 68 ~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 68 ETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp HHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred HHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 68999999 578999999999999876
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=93.67 E-value=0.054 Score=35.36 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=20.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEe
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRL 25 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~ 25 (110)
++|+.|++.|||+.+.|++|-|.+
T Consensus 62 ~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 62 EDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp HHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred HHHHHHHHHhCCCEECCcEeeeEE
Confidence 689999999999999999944433
No 141
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.66 E-value=0.035 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=25.2
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. ||+...||+|.|.+|..+
T Consensus 68 ~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 68 EIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp HHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred HHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 689999998 999999999999999876
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.62 E-value=0.034 Score=36.63 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=25.0
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||....|++|.|+|+...
T Consensus 62 ~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 62 DETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp HHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred HHHHHHH-HhCCcEecCceeeecCCccc
Confidence 6899999 89999999999999998765
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.57 E-value=0.038 Score=37.11 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=23.3
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. ||....|++|.|+||..+
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 689999987 899999999999999887
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.45 E-value=0.011 Score=35.84 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=23.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLAS 27 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ 27 (110)
++|+.|++.|||+.+.||.|-|+|++
T Consensus 58 ~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 58 SAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 68999999999999999999998875
No 145
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.23 E-value=0.057 Score=39.35 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred hHHHHHHHhh-cceecc---CCceEEEecccc
Q 033853 2 QEAKLAKEKM-HGRLAC---GRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekm-nGKLa~---gRpLVVR~A~ek 29 (110)
++|+.|++.| ||.+.. +|||+|.||...
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 6899999999 666666 999999999876
No 146
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.59 E-value=0.048 Score=37.35 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred hHHHHHHHhhcceeccCCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek~ 30 (110)
+.|..|++ |||.=++||.|-|++|+...
T Consensus 60 ~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 60 SSALNVLS-LNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred HHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence 46778888 99999999999999998763
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=90.43 E-value=0.089 Score=36.66 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=24.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+ .|||....||+|.|.+|...
T Consensus 97 e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 97 EEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp HHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred HHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 6899999 88999999999999998876
No 148
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=90.12 E-value=0.24 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.6
Q ss_pred hHHHHHHHhhcceecc---CCceEEEeccccc
Q 033853 2 QEAKLAKEKMHGRLAC---GRPLVVRLASEKY 30 (110)
Q Consensus 2 eEAElAkekmnGKLa~---gRpLVVR~A~ek~ 30 (110)
++|+.|++.|||.... ++++.|.++....
T Consensus 58 ~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 58 KAALEAQNALHNMKVLPGMHHPIQMKPADSEK 89 (175)
T ss_dssp HHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC
T ss_pred HHHHHHHHHhcCcEEccCCccceEEccccccc
Confidence 6899999999998766 7899999987663
No 149
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.57 E-value=0.2 Score=36.19 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=24.5
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ |||....|++|.|.|+...
T Consensus 92 ~~A~~A~~-~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 92 DGALAAIT-KTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp HHHHHHHT-TTTCEETTEECEEEECCSC
T ss_pred HHHHHHHH-hCCcEeCCcEEEEEECCCC
Confidence 68999995 9999999999999998765
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=88.43 E-value=0.29 Score=32.72 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. +|....|++|.|.||...
T Consensus 66 ~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 66 EEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp HHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred HHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 689999987 999999999999999766
No 151
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.30 E-value=0.18 Score=32.04 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=14.1
Q ss_pred hHHHHHHHhhcceec
Q 033853 2 QEAKLAKEKMHGRLA 16 (110)
Q Consensus 2 eEAElAkekmnGKLa 16 (110)
++|+.|++.|||+.+
T Consensus 77 ~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 77 EKCEAVIGHFNGKFI 91 (114)
T ss_dssp HHHHHHHHHHBTCCC
T ss_pred HHHHHHHHHhCCCEE
Confidence 689999999999999
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.78 E-value=0.19 Score=34.21 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=24.9
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|+++ ||+...||+|.|..|..+
T Consensus 79 ~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 79 EYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 689999997 999999999999999876
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=86.63 E-value=0.16 Score=34.00 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=25.1
Q ss_pred hHHHHHHHhh-cceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKM-HGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekm-nGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.| ||+.+.| ++.|++|...
T Consensus 24 ~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 24 ATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp HHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred HHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 6899999999 9999999 9999999875
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=82.98 E-value=0.3 Score=30.35 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=23.7
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++ ||....|++|.|.||..+
T Consensus 61 ~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 61 VDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp CCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred HHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 67999999 999999999999999876
No 155
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=77.62 E-value=1.2 Score=28.22 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=18.3
Q ss_pred hHHHHHHHhhcceeccCCceE
Q 033853 2 QEAKLAKEKMHGRLACGRPLV 22 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLV 22 (110)
++|+.|++.|||+...||..+
T Consensus 72 ~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 72 AHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SHHHHHHHHCSSEECSTTCEE
T ss_pred HHHHHHHHHhCCcccCCCceE
Confidence 689999999999999998643
No 156
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=73.36 E-value=2.3 Score=34.13 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.5
Q ss_pred hHHHHHHHhhcceec---cCC--ceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLA---CGR--PLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa---~gR--pLVVR~A~ek 29 (110)
+||+.|++.|||+-. +|+ ||-|.++.+.
T Consensus 67 ~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 67 EESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 99 (345)
T ss_dssp HHHHHHHHHTTTCEEECTTSCEEECEEEECSSE
T ss_pred HHHHHHHHHhCCCccccccCCceEEEEEEeecc
Confidence 799999999999977 466 6777777544
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.88 E-value=2.9 Score=26.75 Aligned_cols=24 Identities=4% Similarity=-0.009 Sum_probs=15.6
Q ss_pred hHHHHHHHhhcceeccCCceEEEecc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLAS 27 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ 27 (110)
++|+.|++.|++ .-|+.|+|.++.
T Consensus 63 ~~a~~Ai~~~~~--~~G~~~~~~~~~ 86 (114)
T 2dnl_A 63 SSVQALIDACLE--EDGKLYLCVSSP 86 (114)
T ss_dssp HHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred HHHHHHHHhhhh--cCCcEEEeccCC
Confidence 689999999943 344555555443
No 158
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=64.44 E-value=3.9 Score=25.15 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033853 60 RSAKIAAIKNKLKALEEE 77 (110)
Q Consensus 60 rsaKIaAIenKLK~LEe~ 77 (110)
-..||.||-.||++||..
T Consensus 26 I~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 26 VVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457999999999999974
No 159
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=64.39 E-value=5 Score=23.04 Aligned_cols=15 Identities=53% Similarity=0.696 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 033853 62 AKIAAIKNKLKALEE 76 (110)
Q Consensus 62 aKIaAIenKLK~LEe 76 (110)
.|-+|+|.||+.||.
T Consensus 8 kkcaalesklqalek 22 (31)
T 3ljm_A 8 KKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666553
No 160
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=64.12 E-value=4.1 Score=29.73 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHHHH--hhcceeccCCceEEEecccccch
Q 033853 4 AKLAKE--KMHGRLACGRPLVVRLASEKYLE 32 (110)
Q Consensus 4 AElAke--kmnGKLa~gRpLVVR~A~ek~~~ 32 (110)
|..|++ .|||..+.||+|.|.+=.+-.++
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~~g~~~ 99 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNKHSILN 99 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECCTTHHH
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECcccHHH
Confidence 789988 89999999999999986665443
No 161
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.81 E-value=6.6 Score=23.98 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 033853 60 RSAKIAAIKNKLKALEEESS 79 (110)
Q Consensus 60 rsaKIaAIenKLK~LEe~s~ 79 (110)
+..||.-+++||+.||+...
T Consensus 21 te~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 46799999999999998653
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=58.84 E-value=4.5 Score=26.12 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=22.1
Q ss_pred hHHHHHHHhhcceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKMHGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekmnGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++. +....|++|-|.|+...
T Consensus 56 ~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 56 SSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp HHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred HHHHHHHhc--ccccCCeEcccccccch
Confidence 689999995 56888999999998765
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.62 E-value=6.3 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.4
Q ss_pred Hhhcceec--cCCceEEEecccc
Q 033853 9 EKMHGRLA--CGRPLVVRLASEK 29 (110)
Q Consensus 9 ekmnGKLa--~gRpLVVR~A~ek 29 (110)
++|+|+-. .|++|.|.||..+
T Consensus 56 ~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 56 QSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp HHTTTCEEEETTEEEEEECCCCC
T ss_pred HHHhcCCceeCCEEEEEEecCCC
Confidence 35777755 8999999999876
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=52.15 E-value=6.3 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.8
Q ss_pred hhcceecc--CCceEEEecccc
Q 033853 10 KMHGRLAC--GRPLVVRLASEK 29 (110)
Q Consensus 10 kmnGKLa~--gRpLVVR~A~ek 29 (110)
+|||+-.. |++|.|.||..+
T Consensus 63 ~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 63 SLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp HHTTCEEEETTEEEEEEECC--
T ss_pred HHcCCCcccCCEEEEEEEcCCC
Confidence 68887654 999999999865
No 165
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.36 E-value=12 Score=20.95 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 033853 61 SAKIAAIKNKLKALE 75 (110)
Q Consensus 61 saKIaAIenKLK~LE 75 (110)
..||+|++.|+-+|-
T Consensus 13 eqkiaalkqkiaslk 27 (28)
T 3ra3_A 13 EQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 469999999988764
No 166
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=35.08 E-value=27 Score=22.86 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 033853 60 RSAKIAAIKNKLKALEEES 78 (110)
Q Consensus 60 rsaKIaAIenKLK~LEe~s 78 (110)
...||.||-.||++||...
T Consensus 25 I~SqIDaV~~KL~~~Er~k 43 (64)
T 3hrn_A 25 IVSKIDAVIVKLEIMERAK 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999843
No 167
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=33.76 E-value=31 Score=20.25 Aligned_cols=16 Identities=63% Similarity=0.736 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 033853 62 AKIAAIKNKLKALEEE 77 (110)
Q Consensus 62 aKIaAIenKLK~LEe~ 77 (110)
.||+||+..--..|++
T Consensus 2 ekiaaikeeqaaieee 17 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEE 17 (36)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3788887777777765
No 168
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=33.16 E-value=17 Score=23.10 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=11.8
Q ss_pred hHHHHHHHhhcce
Q 033853 2 QEAKLAKEKMHGR 14 (110)
Q Consensus 2 eEAElAkekmnGK 14 (110)
++|+.|++.|||.
T Consensus 64 ~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 64 MDASQLLQILQSL 76 (95)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCC
Confidence 6899999999985
No 169
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.95 E-value=24 Score=21.22 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=19.3
Q ss_pred HHHHHHHhhcceeccCCceEEEecc
Q 033853 3 EAKLAKEKMHGRLACGRPLVVRLAS 27 (110)
Q Consensus 3 EAElAkekmnGKLa~gRpLVVR~A~ 27 (110)
.|+.+++.|++.=+.||++.|+.|+
T Consensus 51 ~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 51 KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CHHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHHhccccCcCceEEEEECC
Confidence 5788999999988999999999875
No 170
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=28.09 E-value=26 Score=20.08 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 033853 64 IAAIKNKLKALEEE 77 (110)
Q Consensus 64 IaAIenKLK~LEe~ 77 (110)
|+|+|.|+-.||+.
T Consensus 2 iaaleqkiaaleqk 15 (32)
T 4g1a_A 2 IAALEQKIAALEQK 15 (32)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 56666666666653
No 171
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=27.63 E-value=43 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcc
Q 033853 57 QMNRSAKIAAIKNKLKALEEESS 79 (110)
Q Consensus 57 ~~SrsaKIaAIenKLK~LEe~s~ 79 (110)
.-.+++||++|+++|..|+....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
T 3n5l_A 277 AEEKAAKLKALDEELAKLEKRMA 299 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999987643
No 172
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=24.78 E-value=51 Score=24.84 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcc
Q 033853 57 QMNRSAKIAAIKNKLKALEEESS 79 (110)
Q Consensus 57 ~~SrsaKIaAIenKLK~LEe~s~ 79 (110)
.-.++++|++|+++|..|+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~ 308 (321)
T 3p7i_A 286 EQDKLAKTTAIQAQLDDLDRLNN 308 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999997643
No 173
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=24.43 E-value=41 Score=22.68 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033853 62 AKIAAIKNKLKALEEES 78 (110)
Q Consensus 62 aKIaAIenKLK~LEe~s 78 (110)
.=-+||++-|+-||++.
T Consensus 57 DLKAAIaASLrd~E~qK 73 (81)
T 1q0v_A 57 DLKAAIQESLREAEEAK 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34589999999999863
No 174
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.36 E-value=71 Score=21.97 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=22.9
Q ss_pred hHHHHHHHhh--cceeccCCceEEEecccc
Q 033853 2 QEAKLAKEKM--HGRLACGRPLVVRLASEK 29 (110)
Q Consensus 2 eEAElAkekm--nGKLa~gRpLVVR~A~ek 29 (110)
++|+.|++.| +|..++|..+.|++..-.
T Consensus 67 ~~A~~av~~ln~~~~~i~g~~~~~evL~Ge 96 (121)
T 1owx_A 67 KEALGKAKDANNGNLQLRNKEVTWEVLEGE 96 (121)
T ss_dssp HHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred HHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence 4899999999 588899998888886543
No 175
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.75 E-value=54 Score=20.19 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 033853 62 AKIAAIKNKLKAL 74 (110)
Q Consensus 62 aKIaAIenKLK~L 74 (110)
.|.+|++.||+.|
T Consensus 34 kklaalksklqal 46 (48)
T 1g6u_A 34 KKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4667777777665
No 176
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*
Probab=21.16 E-value=39 Score=25.70 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.7
Q ss_pred CCceEEEeccccc
Q 033853 18 GRPLVVRLASEKY 30 (110)
Q Consensus 18 gRpLVVR~A~ek~ 30 (110)
|+|+++|++||-.
T Consensus 99 g~pV~~R~~hE~n 111 (283)
T 2v3g_A 99 GKEIWLRPLHEAN 111 (283)
T ss_dssp CSCEEEEESCCTT
T ss_pred CCcEEEEeccccC
Confidence 7899999999974
No 177
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=21.06 E-value=34 Score=21.46 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=24.2
Q ss_pred cceeccCCceEEEecccccchHHhhcchhhhccccccCCCCCCccccCHHHHHHHHH
Q 033853 12 HGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIK 68 (110)
Q Consensus 12 nGKLa~gRpLVVR~A~ek~~~~~~~~s~k~l~~~~~a~~sg~~~g~~SrsaKIaAIe 68 (110)
+|-|---+|+||||- -++. +.-+. .-...+|-+|=|+.|-
T Consensus 7 ggglkdtkpvvvrly----pdei-ealks------------rvpantsmsayirrii 46 (53)
T 2kke_A 7 GGGLKDTKPVVVRLY----PDEI-EALKS------------RVPANTSMSAYIRRII 46 (53)
T ss_dssp SSTTTSSEEEEEEEC----HHHH-HHHHT------------TCCSSSCHHHHHHHHH
T ss_pred CCCcccCCceEEEeC----hhHH-HHHHh------------cCCCcccHHHHHHHHH
Confidence 456667799999993 3332 11011 1234678889888763
Done!