BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033857
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSVKDRI +SMI DAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 65 ITPGKCFCFQST 76
I PG+ + T
Sbjct: 63 IKPGESVLIEPT 74
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSVKDRI +SMI DAE KGL
Sbjct: 1 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 60
Query: 65 ITPGKCFCFQST 76
I PG+ + T
Sbjct: 61 IKPGESVLIEPT 72
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 56/72 (77%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSV DRI +SMI DAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGL 62
Query: 65 ITPGKCFCFQST 76
I PG+ + T
Sbjct: 63 IKPGESVLIEPT 74
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 101 bits (252), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/74 (60%), Positives = 56/74 (75%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA+IAAKLE+M+PC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKCFCFQST 76
G I+PGK + T
Sbjct: 169 GFISPGKSVLVEPT 182
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
Length = 344
Score = 95.5 bits (236), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 5/75 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
IKK V++LIG TP+VYLN V +GC A++A K EMMQP +S+KDR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 67 PGKCFCFQSTLITST 81
PGK +TLI T
Sbjct: 85 PGK-----TTLIEPT 94
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 93.6 bits (231), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 5/75 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
IKK V++LIG TP+VYLN V +GC A++A K EMMQP +S+ DR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 67 PGKCFCFQSTLITST 81
PGK +TLI T
Sbjct: 85 PGK-----TTLIEPT 94
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 42/61 (68%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIK 65
Query: 67 P 67
P
Sbjct: 66 P 66
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide
Dfsi
Length = 313
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 41/61 (67%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 6 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLIK 65
Query: 67 P 67
P
Sbjct: 66 P 66
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++T+LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 P 67
P
Sbjct: 67 P 67
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +++ +LIG TP+V L V DG A + AKLE P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 P 67
P
Sbjct: 67 P 67
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 6 EIKKDVTELIGHTPMVYLNNV--VDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE++G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 64 LITPG 68
L+ PG
Sbjct: 109 LLKPG 113
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
+TELIG TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPG 65
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPG 60
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G I AK+E P SVK RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGV 57
Query: 65 ITPG 68
+ PG
Sbjct: 58 LKPG 61
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A + K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKCFCFQST 76
PGK +S+
Sbjct: 91 PGKSVVVESS 100
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+I +D + IGHTP+V LN + +G I AK+E P SV RI +MI DAE +G+
Sbjct: 1 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGV 57
Query: 65 ITPG 68
+ PG
Sbjct: 58 LKPG 61
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A + K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKCFCFQST 76
PGK +S+
Sbjct: 70 PGKSIVVESS 79
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFC 72
+ IG+TP+V L + + I KLE P SVKDR A SMI +AE +G I PG
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLI 65
Query: 73 FQSTLITSTKPILL--LKILRVSCVFQDFCS 101
++ T ++ LK R+ + D S
Sbjct: 66 EATSGNTGIALAMIAALKGYRMKLLMPDNMS 96
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFC 72
+ IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLI 65
Query: 73 FQSTLITSTKPILL--LKILRVSCVFQDFCS 101
++ T ++ LK R+ + D S
Sbjct: 66 EATSGNTGIALAMIAALKGYRMKLLMPDNMS 96
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 64 LITPG 68
+ PG
Sbjct: 157 TLKPG 161
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
+I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 32 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 91
Query: 64 LITPG 68
+ PG
Sbjct: 92 TLKPG 96
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFC 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDVLI 65
Query: 73 FQSTLITSTKPILL--LKILRVSCVFQDFCS 101
++ T ++ LK R+ + D S
Sbjct: 66 EATSGNTGIALAMIAALKGYRMKLLMPDNMS 96
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG + AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKCFCFQSTLITSTKPILL--LKILRVSCVFQDFCS 101
PG ++ T + LK R+ CV + S
Sbjct: 71 RPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTS 108
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG + AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKCFCFQSTLITSTKPILL--LKILRVSCVFQDFCS 101
PG ++ T + LK R+ CV + S
Sbjct: 69 RPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTS 106
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFC 72
+ IG+TP+V L + + + KLE P SV DR A SMI +AE +G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDVLI 65
Query: 73 FQSTLITSTKPILL--LKILRVSCVFQDFCS 101
++ T ++ LK R+ + D S
Sbjct: 66 EATSGNTGIALAMIAALKGYRMKLLMPDNMS 96
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 13 ELIGHTPMVYLNNVV-------DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+ +G+TP+V L + DG + AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKCFCFQSTLITSTKPILL--LKILRVSCVFQDFCS 101
PG ++ T + LK R+ CV + S
Sbjct: 72 RPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTS 109
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino
Acid Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino
Acid Into Proteins As Biophysical Probe
Length = 291
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
LIG TP+V L D + I KLE P SVKDR A MI DAE +GL+ G
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 55
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
LIG TP+V L D + I KLE P SVKDR A MI DAE +GL+ G
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 67
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCV----AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + I KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPG 68
G + PG
Sbjct: 73 GRLKPG 78
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCV----AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + I KLE P SSVKDR+ ++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63 GLITPG 68
G + PG
Sbjct: 72 GRLKPG 77
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
Length = 360
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
VT L G TP++ N+ GC H+ K+E + P S KDR + DA G
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHL--KVEGLNPTGSFKDRGMTMAVTDALAHG 84
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 39 EMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILL 86
E +P S R+ + ED GLI PG + +I T PI L
Sbjct: 862 EFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPL 909
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,064,379
Number of Sequences: 62578
Number of extensions: 96376
Number of successful extensions: 230
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 32
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)