Query 033857
Match_columns 110
No_of_seqs 120 out of 1181
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 3.1E-28 6.7E-33 195.2 8.8 91 8-104 2-100 (300)
2 KOG1252 Cystathionine beta-syn 99.9 4.4E-27 9.6E-32 191.2 8.6 100 1-105 36-143 (362)
3 PLN00011 cysteine synthase 99.9 2.2E-26 4.7E-31 183.4 10.5 98 1-103 1-106 (323)
4 PLN03013 cysteine synthase 99.9 3.8E-26 8.2E-31 190.2 10.5 97 3-104 109-213 (429)
5 PRK11761 cysM cysteine synthas 99.9 4.5E-26 9.7E-31 180.0 9.6 93 6-104 1-101 (296)
6 PLN02565 cysteine synthase 99.9 7.1E-26 1.5E-30 181.1 9.8 95 5-104 3-105 (322)
7 PLN02356 phosphateglycerate ki 99.9 5.6E-25 1.2E-29 182.9 9.7 95 5-105 41-143 (423)
8 PRK10717 cysteine synthase A; 99.9 7.4E-25 1.6E-29 174.2 10.0 93 6-104 2-102 (330)
9 PLN02556 cysteine synthase/L-3 99.9 7.5E-25 1.6E-29 178.5 9.8 95 5-104 47-149 (368)
10 TIGR01138 cysM cysteine syntha 99.9 1.6E-24 3.4E-29 170.6 9.7 87 11-103 2-96 (290)
11 TIGR01137 cysta_beta cystathio 99.9 3.6E-24 7.8E-29 175.1 9.2 91 7-103 1-99 (454)
12 TIGR01136 cysKM cysteine synth 99.9 1.1E-23 2.4E-28 165.3 9.9 87 12-104 2-96 (299)
13 TIGR01139 cysK cysteine syntha 99.9 1.3E-23 2.8E-28 164.7 9.7 86 12-104 2-95 (298)
14 PRK06110 hypothetical protein; 99.9 1.3E-23 2.9E-28 166.9 7.2 94 3-104 7-108 (322)
15 PLN02970 serine racemase 99.9 1.9E-23 4.1E-28 166.8 8.1 92 4-104 14-113 (328)
16 PRK08246 threonine dehydratase 99.9 3.5E-23 7.7E-28 164.2 9.1 91 2-104 8-106 (310)
17 PRK06608 threonine dehydratase 99.9 2.5E-23 5.4E-28 167.4 7.9 94 3-104 9-110 (338)
18 PRK07476 eutB threonine dehydr 99.9 3.1E-23 6.6E-28 164.9 7.8 93 3-104 5-105 (322)
19 cd06447 D-Ser-dehyd D-Serine d 99.9 2.1E-23 4.6E-28 172.3 7.1 91 15-105 50-173 (404)
20 PRK08198 threonine dehydratase 99.9 4.3E-23 9.4E-28 167.9 7.0 93 3-104 8-108 (404)
21 cd01562 Thr-dehyd Threonine de 99.9 9.5E-23 2E-27 158.7 6.8 93 2-103 2-102 (304)
22 PRK07048 serine/threonine dehy 99.9 1.2E-22 2.6E-27 161.0 7.5 93 3-104 10-110 (321)
23 PRK06381 threonine synthase; V 99.9 1.8E-22 3.9E-27 159.5 8.2 83 11-103 9-100 (319)
24 PRK08638 threonine dehydratase 99.9 1.2E-22 2.7E-27 163.1 7.0 94 2-104 12-113 (333)
25 PRK06382 threonine dehydratase 99.9 2E-22 4.4E-27 165.0 7.6 93 3-104 11-111 (406)
26 TIGR02035 D_Ser_am_lyase D-ser 99.9 2.1E-22 4.5E-27 167.6 7.8 93 14-106 67-192 (431)
27 PRK08526 threonine dehydratase 99.9 1.4E-22 3.1E-27 166.6 6.7 93 3-104 6-106 (403)
28 PRK08639 threonine dehydratase 99.9 1.3E-22 2.8E-27 167.0 5.9 93 3-104 11-111 (420)
29 TIGR02991 ectoine_eutB ectoine 99.9 3.7E-22 8.1E-27 158.9 8.1 93 3-104 5-105 (317)
30 PRK02991 D-serine dehydratase; 99.9 3.6E-22 7.8E-27 166.5 7.6 91 15-105 73-196 (441)
31 cd01561 CBS_like CBS_like: Thi 99.9 1.3E-21 2.8E-26 152.7 9.7 83 16-104 1-91 (291)
32 PRK08813 threonine dehydratase 99.9 1.1E-21 2.4E-26 159.6 9.4 87 3-104 25-119 (349)
33 PRK07334 threonine dehydratase 99.9 4.4E-22 9.5E-27 162.7 6.0 93 2-103 8-108 (403)
34 PRK06815 hypothetical protein; 99.9 6.2E-22 1.3E-26 157.1 6.6 94 2-104 5-106 (317)
35 TIGR02079 THD1 threonine dehyd 99.9 5.6E-22 1.2E-26 163.0 6.5 92 3-103 2-101 (409)
36 PRK07409 threonine synthase; V 99.9 9.6E-22 2.1E-26 158.0 7.7 80 11-100 25-112 (353)
37 PRK06721 threonine synthase; R 99.9 8.7E-22 1.9E-26 158.7 7.4 80 11-100 22-109 (352)
38 PRK06352 threonine synthase; V 99.9 1.1E-21 2.5E-26 158.1 7.2 80 11-100 22-109 (351)
39 COG1171 IlvA Threonine dehydra 99.8 8.1E-22 1.8E-26 160.8 5.7 93 6-106 14-114 (347)
40 cd01563 Thr-synth_1 Threonine 99.8 2.5E-21 5.4E-26 152.8 7.8 85 10-104 15-108 (324)
41 cd06448 L-Ser-dehyd Serine deh 99.8 2.9E-21 6.2E-26 153.8 7.5 81 17-104 1-89 (316)
42 KOG1481 Cysteine synthase [Ami 99.8 1.2E-21 2.7E-26 157.9 5.1 90 8-103 40-137 (391)
43 TIGR01127 ilvA_1Cterm threonin 99.8 2.6E-21 5.7E-26 156.2 6.4 78 18-104 1-86 (380)
44 PRK08197 threonine synthase; V 99.8 3.5E-21 7.6E-26 157.0 7.1 84 11-104 73-165 (394)
45 PRK06450 threonine synthase; V 99.8 6.7E-21 1.5E-25 153.6 8.2 76 11-104 52-135 (338)
46 PRK12483 threonine dehydratase 99.8 5.3E-21 1.2E-25 162.3 7.8 87 10-105 30-124 (521)
47 PLN02550 threonine dehydratase 99.8 5.7E-21 1.2E-25 164.3 7.6 86 10-104 102-195 (591)
48 PRK06260 threonine synthase; V 99.8 7.8E-21 1.7E-25 155.1 7.4 79 11-99 61-148 (397)
49 PRK05638 threonine synthase; V 99.8 1.6E-20 3.5E-25 155.3 8.2 82 11-103 60-149 (442)
50 PRK07591 threonine synthase; V 99.8 1.5E-20 3.2E-25 155.1 7.2 83 11-103 83-174 (421)
51 PLN02569 threonine synthase 99.8 2E-20 4.2E-25 157.6 7.5 86 11-102 127-223 (484)
52 TIGR01124 ilvA_2Cterm threonin 99.8 2.2E-20 4.8E-25 157.5 7.7 87 9-104 9-103 (499)
53 PF00291 PALP: Pyridoxal-phosp 99.8 2.3E-20 5E-25 143.9 7.1 83 11-103 1-93 (306)
54 TIGR00260 thrC threonine synth 99.8 1.9E-20 4.1E-25 148.0 6.3 82 11-102 17-108 (328)
55 cd00640 Trp-synth-beta_II Tryp 99.8 1.4E-19 3E-24 137.3 9.1 79 18-103 1-87 (244)
56 PRK09224 threonine dehydratase 99.8 5.6E-20 1.2E-24 154.9 7.6 86 10-104 13-106 (504)
57 PRK08329 threonine synthase; V 99.8 2E-19 4.3E-24 144.8 8.1 74 12-102 59-140 (347)
58 PRK08206 diaminopropionate amm 99.8 1.9E-19 4.2E-24 147.8 6.7 94 4-103 29-153 (399)
59 TIGR03844 cysteate_syn cysteat 99.8 3.7E-19 8E-24 146.5 5.5 80 14-103 59-154 (398)
60 TIGR00263 trpB tryptophan synt 99.8 1.1E-18 2.4E-23 142.6 7.8 80 11-99 43-132 (385)
61 KOG1251 Serine racemase [Signa 99.8 4.9E-19 1.1E-23 140.7 4.2 98 1-107 9-114 (323)
62 TIGR01415 trpB_rel pyridoxal-p 99.7 7.1E-18 1.5E-22 139.9 9.2 80 12-100 62-152 (419)
63 cd06446 Trp-synth_B Tryptophan 99.7 5.2E-18 1.1E-22 137.4 7.9 82 11-101 27-118 (365)
64 TIGR01747 diampropi_NH3ly diam 99.7 3.6E-18 7.8E-23 139.7 5.8 85 14-104 19-132 (376)
65 TIGR03528 2_3_DAP_am_ly diamin 99.7 4.4E-18 9.4E-23 140.0 5.9 87 14-103 38-150 (396)
66 PRK04346 tryptophan synthase s 99.7 1.2E-17 2.6E-22 137.9 8.0 81 11-100 51-141 (397)
67 PRK12391 tryptophan synthase s 99.7 1.6E-17 3.4E-22 138.2 8.6 80 11-99 71-160 (427)
68 PRK13028 tryptophan synthase s 99.7 1.4E-17 3.1E-22 137.7 8.2 82 11-101 55-146 (402)
69 TIGR01275 ACC_deam_rel pyridox 99.7 2.3E-17 4.9E-22 129.9 8.1 76 15-100 5-92 (311)
70 PRK13802 bifunctional indole-3 99.7 2.7E-17 5.9E-22 143.7 8.9 81 11-100 319-414 (695)
71 PRK14045 1-aminocyclopropane-1 99.7 1.3E-17 2.8E-22 133.1 6.2 87 5-101 9-107 (329)
72 PLN02618 tryptophan synthase, 99.7 2.2E-17 4.9E-22 136.9 7.7 83 9-100 57-154 (410)
73 KOG1250 Threonine/serine dehyd 99.7 1.4E-17 3.1E-22 138.4 6.3 89 8-105 57-153 (457)
74 PRK03910 D-cysteine desulfhydr 99.7 2.8E-17 6.1E-22 131.0 7.3 86 8-103 6-103 (331)
75 PRK12390 1-aminocyclopropane-1 99.7 1.5E-16 3.2E-21 127.1 6.8 84 8-101 6-104 (337)
76 PRK13803 bifunctional phosphor 99.7 1.5E-16 3.2E-21 137.0 7.1 80 12-100 265-353 (610)
77 cd06449 ACCD Aminocyclopropane 99.6 2.8E-16 6E-21 123.9 6.3 75 18-102 1-90 (307)
78 TIGR01274 ACC_deam 1-aminocycl 99.6 8.3E-16 1.8E-20 123.0 7.1 82 9-100 6-102 (337)
79 COG0498 ThrC Threonine synthas 99.6 3.2E-15 7E-20 124.3 5.9 85 14-108 73-168 (411)
80 cd01560 Thr-synth_2 Threonine 99.0 8.4E-10 1.8E-14 93.0 6.4 77 17-108 87-175 (460)
81 PRK09225 threonine synthase; V 98.9 2.9E-09 6.3E-14 89.8 5.6 75 17-108 88-174 (462)
82 KOG1395 Tryptophan synthase be 98.4 3E-07 6.5E-12 76.8 4.1 80 10-98 114-204 (477)
83 COG0133 TrpB Tryptophan syntha 98.0 5.8E-06 1.3E-10 68.3 4.2 79 11-98 49-136 (396)
84 COG1350 Predicted alternative 97.9 1.8E-05 3.8E-10 65.9 5.7 75 14-98 74-160 (432)
85 COG3048 DsdA D-serine dehydrat 96.0 0.0077 1.7E-07 50.2 3.8 91 15-105 76-199 (443)
86 COG2515 Acd 1-aminocyclopropan 89.3 0.42 9E-06 39.4 3.3 79 9-97 7-97 (323)
87 PF08541 ACP_syn_III_C: 3-Oxoa 41.6 38 0.00082 21.5 3.1 28 51-84 52-79 (90)
88 smart00391 MBD Methyl-CpG bind 39.7 46 0.001 21.6 3.2 39 40-79 32-71 (77)
89 PF10727 Rossmann-like: Rossma 34.3 80 0.0017 22.3 4.0 61 11-88 50-110 (127)
90 PF09345 DUF1987: Domain of un 26.8 58 0.0013 22.2 2.2 33 31-63 44-76 (99)
91 COG2248 Predicted hydrolase (m 24.4 64 0.0014 26.5 2.3 52 31-83 100-154 (304)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.1e-28 Score=195.15 Aligned_cols=91 Identities=40% Similarity=0.532 Sum_probs=85.6
Q ss_pred HHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHh
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLL 87 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~ 87 (110)
++++.+.+|+|||++++++....+++||+|+|++||+||+|||.|++||++|+++|.|+||+ +|||+||||+|+
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~------tIVE~TSGNTGI 75 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG------TIVEATSGNTGI 75 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC------EEEEcCCChHHH
Confidence 46788999999999999998877899999999999999999999999999999999999998 999999999998
Q ss_pred h--------cCcEEEEecCCCcccc
Q 033857 88 K--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 88 a--------g~~~~iv~p~~~~~~~ 104 (110)
+ |+++++|||++.+.+-
T Consensus 76 ~LA~vaa~~Gy~~iivmP~~~S~er 100 (300)
T COG0031 76 ALAMVAAAKGYRLIIVMPETMSQER 100 (300)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 5 9999999999988764
No 2
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.94 E-value=4.4e-27 Score=191.20 Aligned_cols=100 Identities=50% Similarity=0.642 Sum_probs=92.7
Q ss_pred CcchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe
Q 033857 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS 80 (110)
Q Consensus 1 ~~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~ 80 (110)
++++..+..++++++|+|||++++++..++.++|++|+|++||+||+|||+|++||.+|+++|.++||+ ++|||+
T Consensus 36 ~~~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~-----stliEp 110 (362)
T KOG1252|consen 36 RAERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGK-----STLIEP 110 (362)
T ss_pred cchhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCc-----eEEEec
Confidence 356778889999999999999999998888999999999999999999999999999999999999997 489999
Q ss_pred CccHHHhh--------cCcEEEEecCCCccccc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
||||+|++ |++++++||++++.+-+
T Consensus 111 TSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~ 143 (362)
T KOG1252|consen 111 TSGNTGIGLAYMAALRGYKCIITMPEKMSKEKR 143 (362)
T ss_pred CCCchHHHHHHHHHHcCceEEEEechhhhHHHH
Confidence 99999985 99999999999887643
No 3
>PLN00011 cysteine synthase
Probab=99.94 E-value=2.2e-26 Score=183.40 Aligned_cols=98 Identities=71% Similarity=0.979 Sum_probs=90.4
Q ss_pred CcchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe
Q 033857 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS 80 (110)
Q Consensus 1 ~~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~ 80 (110)
||+++.+++++.+.+|+|||++++++....+.+||+|+|++||+||||||+|.+++..|.++|.+.||. .+||++
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~-----~~vv~a 75 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGK-----STLIEA 75 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCC-----cEEEEe
Confidence 899999999999999999999999987655689999999999999999999999999999999999983 289999
Q ss_pred CccHHHhh--------cCcEEEEecCCCccc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
|+||+|++ |++++||||+.++..
T Consensus 76 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~ 106 (323)
T PLN00011 76 TAGNTGIGLACIGAARGYKVILVMPSTMSLE 106 (323)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 99999985 999999999998753
No 4
>PLN03013 cysteine synthase
Probab=99.93 E-value=3.8e-26 Score=190.17 Aligned_cols=97 Identities=51% Similarity=0.761 Sum_probs=87.9
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
++.++++++.+.+|+|||++++.+....+++||+|+|++||+||||||+|+++|.+|+++|.+.+|+ ++||++||
T Consensus 109 ~~~~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~-----~~VVeaSS 183 (429)
T PLN03013 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGK-----SVLVEPTS 183 (429)
T ss_pred cHHHHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCC-----cEEEEECC
Confidence 3445888999999999999999988766789999999999999999999999999999999999994 27999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |++++||||+.++...
T Consensus 184 GN~G~ALA~~a~~~G~~~~VvvP~~~s~~K 213 (429)
T PLN03013 184 GNTGIGLAFIAASRGYRLILTMPASMSMER 213 (429)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCCcHHH
Confidence 999985 9999999999988764
No 5
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.93 E-value=4.5e-26 Score=179.95 Aligned_cols=93 Identities=35% Similarity=0.387 Sum_probs=85.4
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
|++++|.+.+|+|||++++++....+.+||+|+|++||+||||||+|.+++.+|.++|.+.+|+ +||++|+||+
T Consensus 1 ~~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~------~vv~aSsGN~ 74 (296)
T PRK11761 1 MAYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD------TLIEATSGNT 74 (296)
T ss_pred CccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC------EEEEeCCChH
Confidence 4678899999999999999988766789999999999999999999999999999999988887 8999999999
Q ss_pred Hhh--------cCcEEEEecCCCcccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|++ |++++||||+.++...
T Consensus 75 g~alA~~a~~~G~~~~i~~p~~~~~~k 101 (296)
T PRK11761 75 GIALAMIAAIKGYRMKLIMPENMSQER 101 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 984 9999999999987653
No 6
>PLN02565 cysteine synthase
Probab=99.93 E-value=7.1e-26 Score=181.13 Aligned_cols=95 Identities=61% Similarity=0.839 Sum_probs=84.6
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccH
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPI 84 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN 84 (110)
-.+++++.+.+|+|||++++.+..+.+.+||+|+|++||+||||||+|++++..+.++|.+.+|+ ++||++||||
T Consensus 3 ~~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~-----~~vv~aSsGN 77 (322)
T PLN02565 3 SSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGE-----SVLIEPTSGN 77 (322)
T ss_pred chhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCC-----cEEEEECCCh
Confidence 34667899999999999998876555679999999999999999999999999999999988984 2699999999
Q ss_pred HHhh--------cCcEEEEecCCCcccc
Q 033857 85 LLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 85 ~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+|++ |++++||||++++...
T Consensus 78 ~g~alA~~a~~~G~~~~ivvp~~~~~~k 105 (322)
T PLN02565 78 TGIGLAFMAAAKGYKLIITMPASMSLER 105 (322)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCcHHH
Confidence 9985 9999999999988754
No 7
>PLN02356 phosphateglycerate kinase
Probab=99.92 E-value=5.6e-25 Score=182.89 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=86.0
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccH
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPI 84 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN 84 (110)
-+.+.++.+.+|+|||++++.++...+.+||+|+|++||+||||||+|+++|.+|+++|.++++. +|+++||||
T Consensus 41 ~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g------~VveaSSGN 114 (423)
T PLN02356 41 KKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG------VVTEGSAGS 114 (423)
T ss_pred cchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC------EEEEeCCHH
Confidence 44567789999999999999998777889999999999999999999999999999999988887 799999999
Q ss_pred HHhh--------cCcEEEEecCCCccccc
Q 033857 85 LLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 85 ~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
+|++ |++++||||++++...+
T Consensus 115 ~g~alA~~aa~~G~~~~ivvP~~~s~~K~ 143 (423)
T PLN02356 115 TAISLATVAPAYGCKCHVVIPDDVAIEKS 143 (423)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCcHHHH
Confidence 9985 99999999999887543
No 8
>PRK10717 cysteine synthase A; Provisional
Probab=99.92 E-value=7.4e-25 Score=174.20 Aligned_cols=93 Identities=33% Similarity=0.467 Sum_probs=85.7
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
.+++++.+.+|+|||+++++++...+.+||+|+|++||+||||||+|.+++.+|.++|.+.+|+ +|+++|+||+
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~------~vv~aSsGN~ 75 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG------TIVEGTAGNT 75 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC------EEEEeCCcHH
Confidence 3578899999999999999998777889999999999999999999999999999999988887 8999999999
Q ss_pred Hhh--------cCcEEEEecCCCcccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|++ |++++||||+..+...
T Consensus 76 g~alA~~a~~~G~~~~vv~p~~~~~~k 102 (330)
T PRK10717 76 GIGLALVAAARGYKTVIVMPETQSQEK 102 (330)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 985 9999999999987653
No 9
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.92 E-value=7.5e-25 Score=178.49 Aligned_cols=95 Identities=49% Similarity=0.687 Sum_probs=86.2
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccH
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPI 84 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN 84 (110)
+++..++...+|+|||++++++....+++||+|+|++||+||||||+|+++|.+|+++|.+.||. ++||++|+||
T Consensus 47 ~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~-----~~vV~aSsGN 121 (368)
T PLN02556 47 TKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGK-----TTLIEPTSGN 121 (368)
T ss_pred chhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCC-----CEEEEeCCch
Confidence 34668889999999999999998777889999999999999999999999999999999999995 3799999999
Q ss_pred HHhh--------cCcEEEEecCCCcccc
Q 033857 85 LLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 85 ~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+|++ |+++++|||+..+...
T Consensus 122 ~G~alA~~a~~~G~~~~ivvp~~~~~~k 149 (368)
T PLN02556 122 MGISLAFMAAMKGYKMILTMPSYTSLER 149 (368)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 9985 9999999999877654
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.91 E-value=1.6e-24 Score=170.57 Aligned_cols=87 Identities=34% Similarity=0.414 Sum_probs=80.4
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
|.+.+|+|||++++++....+.+||+|+|++||+||||||+|.++|..|+++|.+.+|+ +||++|+||+|.+
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~------~vv~aSsGN~g~alA 75 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD------VLIEATSGNTGIALA 75 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC------EEEEECCChHHHHHH
Confidence 56789999999999988777789999999999999999999999999999999988988 8999999999985
Q ss_pred ------cCcEEEEecCCCccc
Q 033857 89 ------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 ------g~~~~iv~p~~~~~~ 103 (110)
|++++||||+.++..
T Consensus 76 ~~a~~~G~~~~i~~p~~~~~~ 96 (290)
T TIGR01138 76 MIAALKGYRMKLLMPDNMSQE 96 (290)
T ss_pred HHHHHcCCeEEEEECCCCCHH
Confidence 999999999998754
No 11
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.90 E-value=3.6e-24 Score=175.06 Aligned_cols=91 Identities=40% Similarity=0.555 Sum_probs=83.5
Q ss_pred hHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHH
Q 033857 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILL 86 (110)
Q Consensus 7 ~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g 86 (110)
|++++.+.+|+|||+++++++...+.+||+|+|++||+||||||+|.++|.+|.++|.+.+|+ +|+++|+||+|
T Consensus 1 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~------~vv~~ssGN~g 74 (454)
T TIGR01137 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD------TIIEPTSGNTG 74 (454)
T ss_pred CccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC------EEEEeCCcHHH
Confidence 356778889999999999998777789999999999999999999999999999999998987 89999999999
Q ss_pred hh--------cCcEEEEecCCCccc
Q 033857 87 LK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 87 ~a--------g~~~~iv~p~~~~~~ 103 (110)
.+ |+++++|||+.++..
T Consensus 75 ~alA~~a~~~G~~~~iv~p~~~~~~ 99 (454)
T TIGR01137 75 IGLALVAAIKGYKCIIVLPEKMSNE 99 (454)
T ss_pred HHHHHHHHHcCCeEEEEeCCCcCHH
Confidence 85 999999999988754
No 12
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.90 E-value=1.1e-23 Score=165.30 Aligned_cols=87 Identities=44% Similarity=0.591 Sum_probs=79.9
Q ss_pred hcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh---
Q 033857 12 TELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK--- 88 (110)
Q Consensus 12 ~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--- 88 (110)
.+.+|+|||++++.++...+.+||+|+|++||+||||||+|.+++..+.++|.+.+|+ +|+++|+||+|++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~------~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD------TIIEATSGNTGIALAM 75 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC------EEEEeCCChHHHHHHH
Confidence 4678999999999998777789999999999999999999999999999999888887 8999999999985
Q ss_pred -----cCcEEEEecCCCcccc
Q 033857 89 -----ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -----g~~~~iv~p~~~~~~~ 104 (110)
|++++||||++++...
T Consensus 76 ~a~~~G~~~~i~vp~~~~~~k 96 (299)
T TIGR01136 76 VAAAKGYKLILTMPETMSLER 96 (299)
T ss_pred HHHHcCCcEEEEECCCCCHHH
Confidence 9999999999987543
No 13
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.90 E-value=1.3e-23 Score=164.68 Aligned_cols=86 Identities=42% Similarity=0.596 Sum_probs=77.9
Q ss_pred hcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh---
Q 033857 12 TELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK--- 88 (110)
Q Consensus 12 ~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--- 88 (110)
.+.+|+|||+++++ ....+.+||+|+|++||+||||||+|.+++..|.++|.+.+|. +|+++|+||+|.+
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~------~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK------TIVEPTSGNTGIALAM 74 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC------EEEEeCCChhHHHHHH
Confidence 46789999999998 4456789999999999999999999999999999999888887 8999999999985
Q ss_pred -----cCcEEEEecCCCcccc
Q 033857 89 -----ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -----g~~~~iv~p~~~~~~~ 104 (110)
|++++||||++++...
T Consensus 75 ~a~~~Gl~~~i~vp~~~~~~k 95 (298)
T TIGR01139 75 VAAARGYKLILTMPETMSIER 95 (298)
T ss_pred HHHHcCCeEEEEeCCccCHHH
Confidence 9999999999987654
No 14
>PRK06110 hypothetical protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=166.94 Aligned_cols=94 Identities=15% Similarity=-0.005 Sum_probs=82.9
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....++.|.+.+++|||++++++++..+.+||+|+|++||+||||||+|.++|.++.++|...+ .|+++|+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~--------~vv~aSs 78 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVR--------GVISATR 78 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCc--------eEEEECC
Confidence 45567788899999999999999987777899999999999999999999999999998875443 4899999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |++++||||+.++...
T Consensus 79 GN~g~alA~~a~~~G~~~~ivvp~~~~~~k 108 (322)
T PRK06110 79 GNHGQSVAFAARRHGLAATIVVPHGNSVEK 108 (322)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 999985 9999999999987653
No 15
>PLN02970 serine racemase
Probab=99.89 E-value=1.9e-23 Score=166.80 Aligned_cols=92 Identities=17% Similarity=0.070 Sum_probs=80.2
Q ss_pred hhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCcc
Q 033857 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 4 ~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsG 83 (110)
....++++.+.+++|||++++++++..+.+||+|+|++||+||||||+|.+++..+.+++. .+ +||++|+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~---~~------~vv~aSsG 84 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA---EK------GVVTHSSG 84 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc---CC------eEEEECCc
Confidence 3455678889999999999999887667899999999999999999999999999886553 23 69999999
Q ss_pred HHHhh--------cCcEEEEecCCCcccc
Q 033857 84 ILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|+|++ |++++||||+.++...
T Consensus 85 N~g~alA~~a~~~G~~~~ivvp~~~~~~k 113 (328)
T PLN02970 85 NHAAALALAAKLRGIPAYIVVPKNAPACK 113 (328)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 99985 9999999999988754
No 16
>PRK08246 threonine dehydratase; Provisional
Probab=99.89 E-value=3.5e-23 Score=164.17 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=79.9
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++....+++|.+.+++|||++++.+... +.+||+|+|++||+||||||+|++++..+.+ +++ +||++|
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-----~~~------~vv~aS 75 (310)
T PRK08246 8 SDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-----PAA------GVVAAS 75 (310)
T ss_pred HHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-----cCC------eEEEeC
Confidence 3566778899999999999999998765 7899999999999999999999999988765 344 799999
Q ss_pred ccHHHhh--------cCcEEEEecCCCcccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||+|++ |++++||||+..+...
T Consensus 76 sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k 106 (310)
T PRK08246 76 GGNAGLAVAYAAAALGVPATVFVPETAPPAK 106 (310)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCCcHHH
Confidence 9999985 9999999999887653
No 17
>PRK06608 threonine dehydratase; Provisional
Probab=99.89 E-value=2.5e-23 Score=167.40 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=84.2
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||++++++++..+.+||+|+|++||+||||||+|++++.+|.++|.+. + +||++|+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~--~------~vv~~Ss 80 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP--D------KIVAYST 80 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC--C------eEEEECC
Confidence 4556778899999999999999998777889999999999999999999999999999998753 3 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |+++++|||+..+...
T Consensus 81 GN~g~alA~~a~~~G~~~~vv~p~~~~~~k 110 (338)
T PRK06608 81 GNHGQAVAYASKLFGIKTRIYLPLNTSKVK 110 (338)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 999984 9999999999987653
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.89 E-value=3.1e-23 Score=164.88 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=82.7
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||+++++++...+.+||+|+|++||+||||||+|.++|..+.++|.. + .||++|+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~---~------gvv~aSs 75 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA---R------GVVTAST 75 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC---C------eEEEECC
Confidence 455678899999999999999999877788999999999999999999999999999988752 2 4999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |+++++|||+.++...
T Consensus 76 GN~g~alA~~a~~~G~~~~i~vp~~~~~~k 105 (322)
T PRK07476 76 GNHGRALAYAARALGIRATICMSRLVPANK 105 (322)
T ss_pred ChHHHHHHHHHHHhCCCEEEEeCCCCCHHH
Confidence 999985 9999999999988543
No 19
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.89 E-value=2.1e-23 Score=172.33 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=75.7
Q ss_pred cCCCceeEcCCccCCCC--------ceEEEEeCCCCC-CCCccchHHHHHHHH-----HHHcCCCCCCCcccc-------
Q 033857 15 IGHTPMVYLNNVVDGCV--------AHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGKCFCF------- 73 (110)
Q Consensus 15 ig~TPLv~~~~l~~~~~--------~~i~~KlE~~nP-tGS~KdR~A~~~i~~-----a~~~G~~~~g~~~~~------- 73 (110)
+++|||++++.++...+ .+||+|+|++|| +||||||+|+++|.. |++.|.+.||...-.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 89999999998876433 799999999999 999999999999975 788898888630000
Q ss_pred ----ccEEEEeCccHHHhh--------cCcEEEEecCCCccccc
Q 033857 74 ----QSTLITSTKPILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 74 ----~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
+.+||++||||||++ |++++||||+++|...+
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~ 173 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKK 173 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 126999999999985 99999999999987644
No 20
>PRK08198 threonine dehydratase; Provisional
Probab=99.88 E-value=4.3e-23 Score=167.92 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=81.9
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+...+++.+.+.+++|||++++++++..+++||+|+|++||+||||||+|++++.++.+++. ++ +||++|+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~---~~------~vv~aSs 78 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER---AR------GVVAASA 78 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc---CC------EEEEECC
Confidence 34567788999999999999999987778899999999999999999999999999986553 34 7999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |++++||||+++|...
T Consensus 79 GN~g~alA~~a~~~G~~~~iv~p~~~~~~k 108 (404)
T PRK08198 79 GNHAQGVAYAASLLGIKATIVMPETAPLSK 108 (404)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 999985 9999999999987654
No 21
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.87 E-value=9.5e-23 Score=158.69 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=83.3
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++..+.+++|.+.+|+|||++++++....+.+||+|+|++||+||||||.|.++|.+++++| +++ +|+++|
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~---~~~------~iv~~s 72 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEE---RAK------GVVAAS 72 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhh---cCC------cEEEEC
Confidence 56788899999999999999999998767789999999999999999999999999998876 223 699999
Q ss_pred ccHHHhh--------cCcEEEEecCCCccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
+||+|.+ |+++++|+|+..+..
T Consensus 73 sGN~g~alA~~a~~~G~~~~ivvp~~~~~~ 102 (304)
T cd01562 73 AGNHAQGVAYAAKLLGIPATIVMPETAPAA 102 (304)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 9999985 999999999988754
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.87 E-value=1.2e-22 Score=161.02 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=80.6
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||++++++....+.+||+|+|++||+||||||+|++++.++.+++. .+ +||++|+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~---~~------~vv~aSs 80 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR---RA------GVVTFSS 80 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc---CC------cEEEeCC
Confidence 45667889999999999999999876667899999999999999999999999999886432 12 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|.+ |+++++|||+..+...
T Consensus 81 GN~g~alA~~a~~~G~~~~vvvp~~~~~~k 110 (321)
T PRK07048 81 GNHAQAIALSARLLGIPATIVMPQDAPAAK 110 (321)
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 999985 9999999999887543
No 23
>PRK06381 threonine synthase; Validated
Probab=99.87 E-value=1.8e-22 Score=159.46 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=74.1
Q ss_pred hhcccCCCceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
-..++|+|||++++++....+ .+||+|+|++||+||||||+|.+++.+|.++|. + +|+++|+||+|++
T Consensus 9 ~~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~----~------~lv~aSsGN~g~al 78 (319)
T PRK06381 9 EEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY----S------GITVGTCGNYGASI 78 (319)
T ss_pred ccccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC----C------EEEEeCCcHHHHHH
Confidence 345699999999999987666 699999999999999999999999999999874 3 7999999999985
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 79 A~~aa~~G~~~~ivvp~~~~~~ 100 (319)
T PRK06381 79 AYFARLYGLKAVIFIPRSYSNS 100 (319)
T ss_pred HHHHHHcCCcEEEEECCCCCHH
Confidence 999999999987653
No 24
>PRK08638 threonine dehydratase; Validated
Probab=99.87 E-value=1.2e-22 Score=163.11 Aligned_cols=94 Identities=22% Similarity=0.188 Sum_probs=81.4
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++....++++.+.+++|||++++++.+..+.+||+|+|++||+||||||+|++++..+.++... . +|+++|
T Consensus 12 ~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~---~------~vv~~S 82 (333)
T PRK08638 12 DDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKR---K------GVVACS 82 (333)
T ss_pred HHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcC---C------eEEEeC
Confidence 3566778899999999999999998876778999999999999999999999999988764321 2 699999
Q ss_pred ccHHHhh--------cCcEEEEecCCCcccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||+|++ |++++||||++++...
T Consensus 83 sGN~g~alA~~aa~~G~~~~iv~p~~~~~~k 113 (333)
T PRK08638 83 AGNHAQGVALSCALLGIDGKVVMPKGAPKSK 113 (333)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeCCCCcHHH
Confidence 9999985 9999999999987654
No 25
>PRK06382 threonine dehydratase; Provisional
Probab=99.87 E-value=2e-22 Score=165.01 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=80.5
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||++++.+++..+.+||+|+|++||+||||||+|++++..+.+.+. .+ .||++|+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~-~~--------gvv~aSs 81 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-RN--------GVITASA 81 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc-CC--------eEEEECC
Confidence 34456778999999999999999987778899999999999999999999999998876542 22 4999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |++++||||++++...
T Consensus 82 GN~g~a~A~aa~~~G~~~~ivmp~~~~~~k 111 (406)
T PRK06382 82 GNHAQGVAYAASINGIDAKIVMPEYTIPQK 111 (406)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCHHHH
Confidence 999985 9999999999987643
No 26
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.87 E-value=2.1e-22 Score=167.60 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=77.7
Q ss_pred ccCCCceeEcCCccCC--------CCceEEEEeCCCCC-CCCccchHHHHHHHH-----HHHcCCCCCCC----------
Q 033857 14 LIGHTPMVYLNNVVDG--------CVAHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (110)
Q Consensus 14 ~ig~TPLv~~~~l~~~--------~~~~i~~KlE~~nP-tGS~KdR~A~~~i~~-----a~~~G~~~~g~---------- 69 (110)
.+++|||++++++++. .+.+||+|+|++|| +||||||+|+++|.. |++.|.+++++
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 7899999999988762 35799999999999 999999999999975 77899887763
Q ss_pred -ccccccEEEEeCccHHHhh--------cCcEEEEecCCCcccccc
Q 033857 70 -CFCFQSTLITSTKPILLLK--------ILRVSCVFQDFCSNWVYT 106 (110)
Q Consensus 70 -~~~~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~~~ 106 (110)
+|--+.+||++||||+|++ |++++||||++++.+.+.
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~ 192 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKD 192 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 1111237999999999985 999999999999987543
No 27
>PRK08526 threonine dehydratase; Provisional
Probab=99.87 E-value=1.4e-22 Score=166.64 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=81.7
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....++++.+.+++|||++++++++..+++||+|+|++||+||||||+|+++|..+.+.+.. + .||++|+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~---~------gVV~aSa 76 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQ---H------GVIAASA 76 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcC---C------EEEEECc
Confidence 445677889999999999999999877788999999999999999999999999998876431 2 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |++++||||+++|...
T Consensus 77 GNhg~avA~aa~~~Gi~~~IvmP~~~p~~k 106 (403)
T PRK08526 77 GNHAQGVAISAKKFGIKAVIVMPEATPLLK 106 (403)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 999985 9999999999987654
No 28
>PRK08639 threonine dehydratase; Validated
Probab=99.87 E-value=1.3e-22 Score=166.98 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=79.5
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+...+++++.+.+++|||++++++++..+++||+|+|++||+||||||+|++++..+.+ +... . .||++|+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~-~~~~--~------~Vv~aSs 81 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSD-EELA--A------GVVCASA 81 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCH-HhhC--C------EEEEECc
Confidence 34456788999999999999999987778899999999999999999999999998643 2222 3 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |++++||||+++|...
T Consensus 82 GN~g~alA~~a~~~G~~~~IvmP~~~~~~k 111 (420)
T PRK08639 82 GNHAQGVAYACRHLGIPGVIFMPVTTPQQK 111 (420)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCChHHH
Confidence 999985 9999999999988653
No 29
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.87 E-value=3.7e-22 Score=158.91 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=80.5
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||++++++.+..+.+||+|+|++||+||||||+|.+++..+.+... . + +||++|+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~--~-~------~vv~aSs 75 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR--A-A------GVVAAST 75 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc--C-C------eEEEECC
Confidence 45677889999999999999999887677899999999999999999999999998764321 1 2 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |+++++|||+.++...
T Consensus 76 GN~g~alA~~a~~~G~~~~v~~p~~~~~~k 105 (317)
T TIGR02991 76 GNHGRALAYAAAEEGVRATICMSELVPQNK 105 (317)
T ss_pred CHHHHHHHHHHHHhCCCEEEEcCCCCCHHH
Confidence 999985 9999999999987643
No 30
>PRK02991 D-serine dehydratase; Provisional
Probab=99.86 E-value=3.6e-22 Score=166.48 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=75.3
Q ss_pred cCCCceeEcCCccCCCC--------ceEEEEeCCCCC-CCCccchHHHHHHHH-----HHHcCCCCCCC-----------
Q 033857 15 IGHTPMVYLNNVVDGCV--------AHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (110)
Q Consensus 15 ig~TPLv~~~~l~~~~~--------~~i~~KlE~~nP-tGS~KdR~A~~~i~~-----a~~~G~~~~g~----------- 69 (110)
+++|||++++.+++..+ .+||+|+|++|| +||||||+|+++|.. ++++|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999998876443 699999999999 999999999999986 56788776662
Q ss_pred ccccccEEEEeCccHHHhh--------cCcEEEEecCCCccccc
Q 033857 70 CFCFQSTLITSTKPILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 70 ~~~~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
||--+.+||++|+||+|++ |++++||||+++|...+
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~ 196 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKK 196 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 2222236999999999985 99999999999987654
No 31
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.86 E-value=1.3e-21 Score=152.71 Aligned_cols=83 Identities=43% Similarity=0.553 Sum_probs=76.0
Q ss_pred CCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-------
Q 033857 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK------- 88 (110)
Q Consensus 16 g~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a------- 88 (110)
|+|||++++++....+.+||+|+|++||+||||+|+|.++|..|.++|.+++|. +|+++|+||+|.+
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~------~vv~~SsGN~g~alA~~a~~ 74 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT------TIIEPTSGNTGIGLAMVAAA 74 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCC------EEEEeCCChHHHHHHHHHHH
Confidence 689999999998777889999999999999999999999999999999877777 8999999999985
Q ss_pred -cCcEEEEecCCCcccc
Q 033857 89 -ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -g~~~~iv~p~~~~~~~ 104 (110)
|+++++|||+..+...
T Consensus 75 ~G~~~~i~vp~~~~~~k 91 (291)
T cd01561 75 KGYRFIIVMPETMSEEK 91 (291)
T ss_pred cCCeEEEEECCCCCHHH
Confidence 9999999999877543
No 32
>PRK08813 threonine dehydratase; Provisional
Probab=99.86 E-value=1.1e-21 Score=159.55 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=76.9
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....+++|.+.+++|||++++.+ +||+|+|++||+||||||+|+++|..+.++|.. . .||++|+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~---~------~VV~aSs 89 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE---R------PVICASA 89 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC---C------eEEEECC
Confidence 455677889999999999998765 399999999999999999999999999998764 2 5999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |++++||||++++...
T Consensus 90 GN~G~alA~aa~~~Gi~~~IvvP~~~~~~K 119 (349)
T PRK08813 90 GNHAQGVAWSAYRLGVQAITVMPHGAPQTK 119 (349)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 999985 9999999999988754
No 33
>PRK07334 threonine dehydratase; Provisional
Probab=99.86 E-value=4.4e-22 Score=162.73 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=80.7
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++.....++|.+.+++|||+++++++...+.+||+|+|++||+||||||+|.+++.++.++.. .. .||++|
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~---~~------~vv~aS 78 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER---AR------GVIAMS 78 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh---CC------cEEEEC
Confidence 455677889999999999999999887677899999999999999999999999999765432 22 599999
Q ss_pred ccHHHhh--------cCcEEEEecCCCccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
+||+|.+ |+++++|||+.++..
T Consensus 79 sGN~g~alA~~a~~~G~~~~iv~p~~~~~~ 108 (403)
T PRK07334 79 AGNHAQGVAYHAQRLGIPATIVMPRFTPTV 108 (403)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 9999985 999999999998854
No 34
>PRK06815 hypothetical protein; Provisional
Probab=99.86 E-value=6.2e-22 Score=157.13 Aligned_cols=94 Identities=15% Similarity=0.028 Sum_probs=80.6
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++....++++.+.+++|||+++++++...+.+||+|+|++||+||||||+|.+++..+.++. . .+ +||++|
T Consensus 5 ~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~-~--~~------~vv~aS 75 (317)
T PRK06815 5 DAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQ-R--QQ------GVITAS 75 (317)
T ss_pred HHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhh-c--Cc------eEEEEC
Confidence 45667788999999999999999988767789999999999999999999999999765432 1 23 699999
Q ss_pred ccHHHhh--------cCcEEEEecCCCcccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||+|.+ |+++++|||+.++...
T Consensus 76 sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k 106 (317)
T PRK06815 76 SGNHGQGVALAAKLAGIPVTVYAPEQASAIK 106 (317)
T ss_pred CChHHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 9999985 9999999999987643
No 35
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.85 E-value=5.6e-22 Score=162.99 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=79.2
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+.....+++.+.+++|||++++.+++..+.+||+|+|++||+||||||+|+++|..+.+. ...+ .||++|+
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~-~~~~--------gvv~aSs 72 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDA-QLAK--------GVVCASA 72 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHH-hhCC--------EEEEECc
Confidence 345677889999999999999999877788999999999999999999999999875432 2222 5999999
Q ss_pred cHHHhh--------cCcEEEEecCCCccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
||||++ |++++||||+++|..
T Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~ 101 (409)
T TIGR02079 73 GNHAQGFAYACRHLGVHGTVFMPATTPKQ 101 (409)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 999985 999999999998864
No 36
>PRK07409 threonine synthase; Validated
Probab=99.85 E-value=9.6e-22 Score=157.99 Aligned_cols=80 Identities=23% Similarity=0.212 Sum_probs=71.7
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+.-.+|+|||+++++++...+.+||+|+|++||+||||||+|.+++..+.++|. + +||++||||+|++
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~----~------~iv~aSsGN~g~alA 94 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA----K------AVICASTGNTSASAA 94 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C------EEEEECCcHHHHHHH
Confidence 344689999999999877667899999999999999999999999999998874 3 7999999999974
Q ss_pred ------cCcEEEEecCCC
Q 033857 89 ------ILRVSCVFQDFC 100 (110)
Q Consensus 89 ------g~~~~iv~p~~~ 100 (110)
|++++||||++.
T Consensus 95 ~~a~~~G~~~~ivvP~~~ 112 (353)
T PRK07409 95 AYAARAGLKAFVLIPEGK 112 (353)
T ss_pred HHHHHcCCCEEEEEcCCC
Confidence 999999999974
No 37
>PRK06721 threonine synthase; Reviewed
Probab=99.85 E-value=8.7e-22 Score=158.72 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=72.4
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+...+|+|||++++++++..+.+||+|+|++||+||||||+|.+++.+|.++|. . +||++|+||+|.+
T Consensus 22 ~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~------~vV~aSsGN~G~alA 91 (352)
T PRK06721 22 VSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS----E------AIICASTGNTSASAA 91 (352)
T ss_pred cccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC----C------EEEEECCcHHHHHHH
Confidence 556689999999999887667899999999999999999999999999999884 3 7999999999974
Q ss_pred ------cCcEEEEecCCC
Q 033857 89 ------ILRVSCVFQDFC 100 (110)
Q Consensus 89 ------g~~~~iv~p~~~ 100 (110)
|+++++|||+..
T Consensus 92 ~~aa~~G~~~~vvvp~~~ 109 (352)
T PRK06721 92 AYAARLGMKCIIVIPEGK 109 (352)
T ss_pred HHHHHCCCcEEEEECCCC
Confidence 999999999874
No 38
>PRK06352 threonine synthase; Validated
Probab=99.85 E-value=1.1e-21 Score=158.14 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=71.9
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+.-.+|+|||++++++....+.+||+|+|++||+||||||+|.++|.+|.++|. + +||++|+||+|.+
T Consensus 22 ~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~----~------~vV~aSsGN~G~AlA 91 (351)
T PRK06352 22 ISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA----E------AVICASTGNTSAAAA 91 (351)
T ss_pred cccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC----C------EEEEECCcHHHHHHH
Confidence 445689999999999887667899999999999999999999999999999874 3 7999999999974
Q ss_pred ------cCcEEEEecCCC
Q 033857 89 ------ILRVSCVFQDFC 100 (110)
Q Consensus 89 ------g~~~~iv~p~~~ 100 (110)
|++++||||++.
T Consensus 92 ~~aa~~G~~~~ivvp~~~ 109 (351)
T PRK06352 92 AYATRAGLKAYIVIPEGK 109 (351)
T ss_pred HHHHHcCCcEEEEEeCCC
Confidence 999999999974
No 39
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=99.85 E-value=8.1e-22 Score=160.77 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=81.4
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
..+.++.+.+.+|||.+++.++...+++||+|+|++||+||||.|||+|.+.++.+++.... .||++|+|||
T Consensus 14 ~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~--------gViaaSaGNH 85 (347)
T COG1171 14 AAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAA--------GVIAASAGNH 85 (347)
T ss_pred HHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcC--------ceEEecCCcH
Confidence 44567888899999999999998889999999999999999999999999999865544333 4999999999
Q ss_pred Hhh--------cCcEEEEecCCCcccccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNWVYT 106 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~~~~ 106 (110)
|++ |++++||||.++|...+.
T Consensus 86 aQGvA~aa~~lGi~a~IvMP~~tp~~Kv~ 114 (347)
T COG1171 86 AQGVAYAAKRLGIKATIVMPETTPKIKVD 114 (347)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCcHHHHH
Confidence 985 999999999999976553
No 40
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.85 E-value=2.5e-21 Score=152.83 Aligned_cols=85 Identities=18% Similarity=0.082 Sum_probs=75.1
Q ss_pred hhhcccCCCceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 10 DVTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
.+.-.+|+|||+++++++...+ .+||+|+|++||+||||||+|.+++.+|.++| ++ +|+++|+||+|.+
T Consensus 15 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g----~~------~vv~~SsGN~g~a 84 (324)
T cd01563 15 IVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG----VK------AVACASTGNTSAS 84 (324)
T ss_pred cccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC----CC------EEEEeCCCHHHHH
Confidence 4666889999999999886554 79999999999999999999999999999887 24 7999999999985
Q ss_pred --------cCcEEEEecCCCcccc
Q 033857 89 --------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 --------g~~~~iv~p~~~~~~~ 104 (110)
|+++++|||++++...
T Consensus 85 lA~~a~~~G~~~~ivvp~~~~~~k 108 (324)
T cd01563 85 LAAYAARAGIKCVVFLPAGKALGK 108 (324)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHH
Confidence 9999999999987653
No 41
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.84 E-value=2.9e-21 Score=153.80 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=73.1
Q ss_pred CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--------
Q 033857 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-------- 88 (110)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-------- 88 (110)
+|||++++++.+..+.+||+|+|++||+||||||+|.++|.+|+++|. .+++ +||++|+||+|.+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~------~vv~aSsGN~g~alA~~a~~~ 73 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECV------HVVCSSGGNAGLAAAYAARKL 73 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCC------eEEEeCCcHHHHHHHHHHHHc
Confidence 699999999987667899999999999999999999999999999886 4555 8999999999974
Q ss_pred cCcEEEEecCCCcccc
Q 033857 89 ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 g~~~~iv~p~~~~~~~ 104 (110)
|+++++|||+.++...
T Consensus 74 G~~~~iv~p~~~~~~k 89 (316)
T cd06448 74 GVPCTIVVPESTKPRV 89 (316)
T ss_pred CCCEEEEECCCCCHHH
Confidence 9999999999887653
No 42
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.84 E-value=1.2e-21 Score=157.95 Aligned_cols=90 Identities=30% Similarity=0.403 Sum_probs=83.9
Q ss_pred HHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHh
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLL 87 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~ 87 (110)
.+.+.++||+|||++++.|+...|++|++|+|++||+||.|||.|+++|+.|+++|.+-||. +|+|.|+||+|+
T Consensus 40 ~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg------~v~EGtaGsTgI 113 (391)
T KOG1481|consen 40 VSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG------TVVEGTAGSTGI 113 (391)
T ss_pred cchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc------eEEecCCCccch
Confidence 34677889999999999999989999999999999999999999999999999999999998 999999999998
Q ss_pred h--------cCcEEEEecCCCccc
Q 033857 88 K--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 88 a--------g~~~~iv~p~~~~~~ 103 (110)
+ |+++.|+||+..+.+
T Consensus 114 slA~v~~a~Gyk~~I~mPddqs~e 137 (391)
T KOG1481|consen 114 SLAHVARALGYKCHIYMPDDQSQE 137 (391)
T ss_pred hHHHhhhhcCcceEEECCChHHHH
Confidence 5 899999999987654
No 43
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.84 E-value=2.6e-21 Score=156.20 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=70.8
Q ss_pred CceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--------c
Q 033857 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK--------I 89 (110)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--------g 89 (110)
|||++++++++..+.+||+|+|++||+||||||+|++++.++.++|.. . +||++|+||+|++ |
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~---~------~vv~aSsGN~g~alA~~a~~~G 71 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ---R------GVVAASAGNHAQGVAYAAKKFG 71 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC---C------EEEEECCCHHHHHHHHHHHHcC
Confidence 899999999877788999999999999999999999999999988753 2 5999999999985 9
Q ss_pred CcEEEEecCCCcccc
Q 033857 90 LRVSCVFQDFCSNWV 104 (110)
Q Consensus 90 ~~~~iv~p~~~~~~~ 104 (110)
+++++|||+.+|...
T Consensus 72 ~~~~iv~p~~~~~~k 86 (380)
T TIGR01127 72 IKAVIVMPESAPPSK 86 (380)
T ss_pred CCEEEEEcCCCcHHH
Confidence 999999999998653
No 44
>PRK08197 threonine synthase; Validated
Probab=99.84 E-value=3.5e-21 Score=157.04 Aligned_cols=84 Identities=20% Similarity=0.127 Sum_probs=73.9
Q ss_pred hhcccCCCceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+.-..|+|||++++++.+..+ .+||+|+|++||+||||||+|.+++..|.+.|. + +|+++|+||+|++
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~------~vv~aSsGN~g~al 142 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV----K------HLAMPTNGNAGAAW 142 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC----C------EEEEeCCcHHHHHH
Confidence 344578999999999876666 599999999999999999999999999998874 3 7999999999984
Q ss_pred -------cCcEEEEecCCCcccc
Q 033857 89 -------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~~ 104 (110)
|++++||||++.+...
T Consensus 143 A~~aa~~G~~~~v~vp~~~~~~k 165 (394)
T PRK08197 143 AAYAARAGIRATIFMPADAPEIT 165 (394)
T ss_pred HHHHHHcCCcEEEEEcCCCCHHH
Confidence 9999999999987653
No 45
>PRK06450 threonine synthase; Validated
Probab=99.84 E-value=6.7e-21 Score=153.60 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+.-.+|+|||++.. +||+|+|++|||||||||+|.+++..|.+.|. + +|+++||||+|++
T Consensus 52 vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~----~------~vv~aSsGN~g~slA 113 (338)
T PRK06450 52 ISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI----K------QISEDSSGNAGASIA 113 (338)
T ss_pred CCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----C------EEEEECCcHHHHHHH
Confidence 55578999999853 69999999999999999999999999998763 3 7999999999974
Q ss_pred ------cCcEEEEecCCCcccc
Q 033857 89 ------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 ------g~~~~iv~p~~~~~~~ 104 (110)
|++++||||++++...
T Consensus 114 ~~aa~~G~~~~i~vP~~~~~~k 135 (338)
T PRK06450 114 AYGAAAGIEVKIFVPETASGGK 135 (338)
T ss_pred HHHHHcCCCEEEEEcCCCCHHH
Confidence 9999999999987654
No 46
>PRK12483 threonine dehydratase; Reviewed
Probab=99.84 E-value=5.3e-21 Score=162.33 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=75.7
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+|.+.+++|||+++++++...+++||+|+|++||+||||+|+|+++|..+.++. ..+ .||++|+||||++
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~-~~~--------GVV~aSaGNha~gv 100 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQ-LAR--------GVITASAGNHAQGV 100 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHH-hcC--------cEEEECCCHHHHHH
Confidence 567889999999999998878899999999999999999999999999876442 222 4999999999985
Q ss_pred -------cCcEEEEecCCCccccc
Q 033857 89 -------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~~~ 105 (110)
|++++||||+++|...+
T Consensus 101 A~aA~~lGi~~~IvmP~~tp~~Kv 124 (521)
T PRK12483 101 ALAAARLGVKAVIVMPRTTPQLKV 124 (521)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHH
Confidence 99999999999987543
No 47
>PLN02550 threonine dehydratase
Probab=99.83 E-value=5.7e-21 Score=164.30 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=75.4
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
++.+.+++|||+++++++...+.+||+|+|++||+||||+|+|+++|.++.++ .+.+| ||++|+||||++
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e-~~~~G--------VV~aSaGNhAqgv 172 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKE-QLDKG--------VICSSAGNHAQGV 172 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHh-cCCCC--------EEEECCCHHHHHH
Confidence 34588999999999999988889999999999999999999999999998654 34443 899999999985
Q ss_pred -------cCcEEEEecCCCcccc
Q 033857 89 -------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~~ 104 (110)
|++++||||+++|...
T Consensus 173 A~aA~~lGika~IvmP~~tp~~K 195 (591)
T PLN02550 173 ALSAQRLGCDAVIAMPVTTPEIK 195 (591)
T ss_pred HHHHHHcCCCEEEEECCCCCHHH
Confidence 9999999999998653
No 48
>PRK06260 threonine synthase; Validated
Probab=99.83 E-value=7.8e-21 Score=155.11 Aligned_cols=79 Identities=22% Similarity=0.137 Sum_probs=71.0
Q ss_pred hhcccCCCceeEcCCccCCCCc-eEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGHTPMVYLNNVVDGCVA-HIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~-~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+...+|+|||++++++....+. +||+|+|++|||||||||++.++|..|.++|. + +|+++|+||+|.+
T Consensus 61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~----~------~vv~aSsGN~g~al 130 (397)
T PRK06260 61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV----K------TVACASTGNTSASL 130 (397)
T ss_pred ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC----C------EEEEeCCcHHHHHH
Confidence 4556899999999998766665 89999999999999999999999999999874 3 7999999999974
Q ss_pred -------cCcEEEEecCC
Q 033857 89 -------ILRVSCVFQDF 99 (110)
Q Consensus 89 -------g~~~~iv~p~~ 99 (110)
|++++||||++
T Consensus 131 A~~aa~~G~~~~i~vP~~ 148 (397)
T PRK06260 131 AAYAARAGLKCYVLLPAG 148 (397)
T ss_pred HHHHHHcCCcEEEEEeCC
Confidence 99999999987
No 49
>PRK05638 threonine synthase; Validated
Probab=99.83 E-value=1.6e-20 Score=155.27 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=70.8
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+...+|+|||++++ +....+.+||+|+|++||+||||||+|.++|.+|.+.|. + +|+++|+||+|.+
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~----~------~vv~aSsGN~g~alA 128 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA----N------GFIVASDGNAAASVA 128 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC----C------EEEEeCCChHHHHHH
Confidence 44568999999984 555556799999999999999999999999999998763 3 7999999999984
Q ss_pred ------cCcEEEEecCCCccc
Q 033857 89 ------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 ------g~~~~iv~p~~~~~~ 103 (110)
|++++||||++.+..
T Consensus 129 ~~aa~~G~~~~i~vp~~~~~~ 149 (442)
T PRK05638 129 AYSARAGKEAFVVVPRKVDKG 149 (442)
T ss_pred HHHHHcCCCEEEEEeCCCCHH
Confidence 999999999987654
No 50
>PRK07591 threonine synthase; Validated
Probab=99.82 E-value=1.5e-20 Score=155.09 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=73.2
Q ss_pred hhcccCCCceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+.-..|+|||++++++++..+ .+||+|+|++||+||||||++.+++..|.+.|. + +|+++|+||+|++
T Consensus 83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~----~------~vv~aSsGN~g~al 152 (421)
T PRK07591 83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF----T------TVACASTGNLANSV 152 (421)
T ss_pred CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC----C------EEEEeCCCHHHHHH
Confidence 344578999999999887666 589999999999999999999999999999874 3 7999999999974
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|++++||||++.+..
T Consensus 153 A~~aa~~Gl~~~I~vP~~~~~~ 174 (421)
T PRK07591 153 AAHAARAGLDSCVFIPADLEAG 174 (421)
T ss_pred HHHHHHcCCCEEEEEcCCCCHH
Confidence 999999999987753
No 51
>PLN02569 threonine synthase
Probab=99.82 E-value=2e-20 Score=157.60 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=72.7
Q ss_pred hhcccCCCceeEcCCccCC-CC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCC-CCCccccccEEEEeCccHHHh
Q 033857 11 VTELIGHTPMVYLNNVVDG-CV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT-PGKCFCFQSTLITSTKPILLL 87 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~-~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~-~g~~~~~~~~vi~~SsGN~g~ 87 (110)
+.-.+|+|||++++++.+. .+ .+||+|+|++|||||||||++..++..|.+.|... ++. .|+++||||+|+
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~------~Vv~ASSGN~Ga 200 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVV------GVGCASTGDTSA 200 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCcc------EEEEeCCcHHHH
Confidence 3445799999999998765 56 58999999999999999999999999999877532 334 799999999997
Q ss_pred h--------cCcEEEEecCCCcc
Q 033857 88 K--------ILRVSCVFQDFCSN 102 (110)
Q Consensus 88 a--------g~~~~iv~p~~~~~ 102 (110)
+ |++++||||++...
T Consensus 201 AlAayaa~~Gl~~~I~vP~~~~~ 223 (484)
T PLN02569 201 ALSAYCAAAGIPSIVFLPADKIS 223 (484)
T ss_pred HHHHHHHhcCCeEEEEEcCCCCC
Confidence 4 99999999997443
No 52
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.82 E-value=2.2e-20 Score=157.51 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=75.7
Q ss_pred HhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
.++.+.+++|||++++++++..+.+||+|+|++||+||||+|+|++++..+.++.. . . .||++|+||||++
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~-~--~------gVV~aSaGNha~~ 79 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK-A--R------GVIAASAGNHAQG 79 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc-C--C------EEEEECCCHHHHH
Confidence 36788899999999999988778899999999999999999999999998754322 1 2 5999999999985
Q ss_pred --------cCcEEEEecCCCcccc
Q 033857 89 --------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 --------g~~~~iv~p~~~~~~~ 104 (110)
|++++||||+++|...
T Consensus 80 vA~aa~~~Gi~~~IvmP~~tp~~K 103 (499)
T TIGR01124 80 VAFSAARLGLKALIVMPETTPDIK 103 (499)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHH
Confidence 9999999999998654
No 53
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.82 E-value=2.3e-20 Score=143.89 Aligned_cols=83 Identities=29% Similarity=0.272 Sum_probs=71.6
Q ss_pred hhcccCCCceeEcC--CccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIGHTPMVYLN--NVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~--~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
|+..+++|||++++ .+....+.+||+|+|.+||+||||||+|.+++..|.++|. . +|+++|+||+|.+
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~----~------~vv~assGN~g~a 70 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG----R------TVVGASSGNHGRA 70 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT----S------EEEEESSSHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc----c------eeeeeccCCceeh
Confidence 56789999999975 4444567999999999999999999999999999988753 3 7999999999985
Q ss_pred --------cCcEEEEecCCCccc
Q 033857 89 --------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 --------g~~~~iv~p~~~~~~ 103 (110)
|+++++|+|+.++..
T Consensus 71 ~A~~a~~~g~~~~i~~p~~~~~~ 93 (306)
T PF00291_consen 71 LAYAAARLGLKCTIVVPEDVSPE 93 (306)
T ss_dssp HHHHHHHHTCEEEEEEETTSHHH
T ss_pred hhhhhhhccccceeeeccccccc
Confidence 999999999997764
No 54
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.82 E-value=1.9e-20 Score=148.02 Aligned_cols=82 Identities=18% Similarity=0.062 Sum_probs=71.7
Q ss_pred hhcccCCCceeEcCCccCCCCc-eEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGHTPMVYLNNVVDGCVA-HIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~-~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+.-.+|+|||++++++....+. +||+|+|++||+||||||++.+++..+.++|.. +|+++||||+|++
T Consensus 17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~----------~vv~aSsGN~g~a~ 86 (328)
T TIGR00260 17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND----------TVLCASTGNTGAAA 86 (328)
T ss_pred hhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC----------EEEEeCCcHHHHHH
Confidence 3335699999999988766666 999999999999999999999999999987742 7999999999985
Q ss_pred -------cCcEEEEecCC-Ccc
Q 033857 89 -------ILRVSCVFQDF-CSN 102 (110)
Q Consensus 89 -------g~~~~iv~p~~-~~~ 102 (110)
|++++||||+. ++.
T Consensus 87 A~~a~~~g~~~~v~~p~~~~s~ 108 (328)
T TIGR00260 87 AAYAGKAGVKVVILYPAGKISL 108 (328)
T ss_pred HHHhccCCCcEEEEECCCCCCH
Confidence 99999999998 664
No 55
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.81 E-value=1.4e-19 Score=137.27 Aligned_cols=79 Identities=33% Similarity=0.342 Sum_probs=71.9
Q ss_pred CceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--------c
Q 033857 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK--------I 89 (110)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--------g 89 (110)
|||++++++....+.+||+|+|+.||+||||||++.+++..+.++|.+ +++ +|+++|+||+|.+ |
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~~------~vv~~ssGN~g~alA~~a~~~g 73 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PKG------VIIESTGGNTGIALAAAAARLG 73 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CCC------EEEEeCCcHHHHHHHHHHHHcC
Confidence 899999999876678999999999999999999999999999999876 566 8999999999985 9
Q ss_pred CcEEEEecCCCccc
Q 033857 90 LRVSCVFQDFCSNW 103 (110)
Q Consensus 90 ~~~~iv~p~~~~~~ 103 (110)
+++++|+|...+..
T Consensus 74 ~~~~v~~p~~~~~~ 87 (244)
T cd00640 74 LKCTIVMPEGASPE 87 (244)
T ss_pred CCEEEEECCCCCHH
Confidence 99999999987654
No 56
>PRK09224 threonine dehydratase; Reviewed
Probab=99.81 E-value=5.6e-20 Score=154.91 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
++.+.+++|||+++++++...+.+||+|+|++||+||||+|+|++++..+.+.. .. . .||++|+||||++
T Consensus 13 ~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~-~~--~------gvV~aSaGNha~av 83 (504)
T PRK09224 13 RVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQ-LA--R------GVITASAGNHAQGV 83 (504)
T ss_pred HhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHh-cC--C------EEEEECcCHHHHHH
Confidence 567889999999999998878899999999999999999999999999876432 12 2 5999999999985
Q ss_pred -------cCcEEEEecCCCcccc
Q 033857 89 -------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~~ 104 (110)
|++++||||+++|...
T Consensus 84 A~aa~~lGi~~~IvmP~~tp~~K 106 (504)
T PRK09224 84 ALSAARLGIKAVIVMPVTTPDIK 106 (504)
T ss_pred HHHHHHcCCCEEEEECCCCCHHH
Confidence 9999999999988654
No 57
>PRK08329 threonine synthase; Validated
Probab=99.79 E-value=2e-19 Score=144.79 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=65.5
Q ss_pred hcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh---
Q 033857 12 TELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK--- 88 (110)
Q Consensus 12 ~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--- 88 (110)
.-..|.|||+++. .+||+|+|++|||||||||+|.+++..|.+.|. + +|+++|+||+|.+
T Consensus 59 sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~----~------~vv~aSsGN~g~alA~ 121 (347)
T PRK08329 59 HLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----N------EVVIDSSGNAALSLAL 121 (347)
T ss_pred cCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC----C------EEEEECCCcHHHHHHH
Confidence 3346889999862 489999999999999999999999999999874 3 7999999999984
Q ss_pred -----cCcEEEEecCCCcc
Q 033857 89 -----ILRVSCVFQDFCSN 102 (110)
Q Consensus 89 -----g~~~~iv~p~~~~~ 102 (110)
|++++||||++++.
T Consensus 122 ~aa~~G~~~~v~vp~~~~~ 140 (347)
T PRK08329 122 YSLSEGIKVHVFVSYNASK 140 (347)
T ss_pred HHHHcCCcEEEEECCCChH
Confidence 99999999998775
No 58
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.78 E-value=1.9e-19 Score=147.76 Aligned_cols=94 Identities=15% Similarity=-0.058 Sum_probs=75.8
Q ss_pred hhhhHHhh--hcccCCCceeEcCCccCCCC-ceEEEEeCCC-CCCCCccchHHHHHHHHHHH--cCC-------------
Q 033857 4 KCEIKKDV--TELIGHTPMVYLNNVVDGCV-AHIAAKLEMM-QPCSSVKDRIAYSMIKDAED--KGL------------- 64 (110)
Q Consensus 4 ~~~~~~~i--~~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~-nPtGS~KdR~A~~~i~~a~~--~G~------------- 64 (110)
.....+.+ ....++|||++++++++..+ .+||+|+|++ ||+||||||++.+.+..+.. .+.
T Consensus 29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 108 (399)
T PRK08206 29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG 108 (399)
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence 34455667 55889999999999987777 6999999998 59999999999998888763 221
Q ss_pred -C---CCCCccccccEEEEeCccHHHhh--------cCcEEEEecCCCccc
Q 033857 65 -I---TPGKCFCFQSTLITSTKPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 65 -~---~~g~~~~~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
+ .++. +|+++|+||+|++ |++++||||+.++..
T Consensus 109 ~~~~~~~~~------~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~ 153 (399)
T PRK08206 109 EVREKLGDI------TFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEE 153 (399)
T ss_pred HHHHhccCC------EEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 0 0233 6999999999985 999999999998854
No 59
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.77 E-value=3.7e-19 Score=146.53 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=68.5
Q ss_pred ccCCCceeEcCCccCCCCc-eEEEE-------eCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 14 LIGHTPMVYLNNVVDGCVA-HIAAK-------LEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 14 ~ig~TPLv~~~~l~~~~~~-~i~~K-------lE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
..|.|||++.+++++..|. ++|+| +|++|||||||||+|.++|..|.+.|. + .|+++|+|||
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~----~------~Vv~aSsGN~ 128 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG----K------TLVVASAGNT 128 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC----C------EEEEECCCHH
Confidence 4567999999998877776 89995 555999999999999999999998872 3 7999999999
Q ss_pred Hhh--------cCcEEEEecCCCccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~ 103 (110)
|++ |++++||||++.+..
T Consensus 129 g~alA~~aa~~Gi~~~I~vP~~~~~~ 154 (398)
T TIGR03844 129 GRAFAEVSAITGQPVILVVPKSSADR 154 (398)
T ss_pred HHHHHHHHHHcCCcEEEEECCChHHH
Confidence 984 999999999986543
No 60
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.76 E-value=1.1e-18 Score=142.64 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=68.6
Q ss_pred hhcccC-CCceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIG-HTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig-~TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+..+++ +|||++++++++..+ .+||+|+|++||+||||||.|.+++..+.+.|. +. .|+++||||+|++
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~---~~------vi~e~ssGN~G~a 113 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK---KR------IIAETGAGQHGVA 113 (385)
T ss_pred HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC---CE------EEEEcCcHHHHHH
Confidence 344565 899999999887666 799999999999999999999999999988773 33 5668999999985
Q ss_pred --------cCcEEEEecCC
Q 033857 89 --------ILRVSCVFQDF 99 (110)
Q Consensus 89 --------g~~~~iv~p~~ 99 (110)
|++++||||+.
T Consensus 114 lA~~a~~~Gl~~~Iv~p~~ 132 (385)
T TIGR00263 114 TATAAALLGLDCEVYMGAE 132 (385)
T ss_pred HHHHHHHcCCCEEEEecCC
Confidence 99999999986
No 61
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=99.75 E-value=4.9e-19 Score=140.75 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=85.8
Q ss_pred CcchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe
Q 033857 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS 80 (110)
Q Consensus 1 ~~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~ 80 (110)
|+++...+++|.+.+..||.+....+.+..|+++|+|||++|.+||||.|+|+|.+..+.++.. .+ .|++.
T Consensus 9 ~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~---~k------gvith 79 (323)
T KOG1251|consen 9 YEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR---AK------GVITH 79 (323)
T ss_pred HHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh---cC------ceEee
Confidence 4567788899999999999999999998889999999999999999999999999999874322 12 59999
Q ss_pred CccHHHhh--------cCcEEEEecCCCccccccc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCSNWVYTA 107 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~~~~~~~ 107 (110)
||||||++ |++++||||.++|.-.+.+
T Consensus 80 SSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a 114 (323)
T KOG1251|consen 80 SSGNHAQALALAAKILGIPATIVVPKDAPICKVAA 114 (323)
T ss_pred cCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHH
Confidence 99999986 9999999999999766544
No 62
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.74 E-value=7.1e-18 Score=139.87 Aligned_cols=80 Identities=19% Similarity=0.094 Sum_probs=67.8
Q ss_pred hcccC-CCceeEcCCccCCCC--ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 12 TELIG-HTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 12 ~~~ig-~TPLv~~~~l~~~~~--~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
...++ +|||++++++.+..+ ++||+|+|++||+||||||+|.+++..+.++|.. . .++++|+||+|.+
T Consensus 62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~---~------~vtetssGN~G~a 132 (419)
T TIGR01415 62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAK---R------LVTETGAGQWGSA 132 (419)
T ss_pred HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCC---e------EEEecCchHHHHH
Confidence 34454 799999999887555 7999999999999999999999999999999853 2 3456799999984
Q ss_pred --------cCcEEEEecCCC
Q 033857 89 --------ILRVSCVFQDFC 100 (110)
Q Consensus 89 --------g~~~~iv~p~~~ 100 (110)
|++++||||+..
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s 152 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVS 152 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCC
Confidence 999999999854
No 63
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.74 E-value=5.2e-18 Score=137.38 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=68.6
Q ss_pred hhcccC-CCceeEcCCccCCC-CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIG-HTPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig-~TPLv~~~~l~~~~-~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
..++++ +|||+++++++... +.+||+|+|++||+||||||.+.+++..|.++|. +. .|+++||||+|++
T Consensus 27 ~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~---~~------vv~~~ssGN~g~a 97 (365)
T cd06446 27 YKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK---KR------VIAETGAGQHGVA 97 (365)
T ss_pred hhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC---Ce------EEEecCchHHHHH
Confidence 344454 89999999988765 5799999999999999999999999999998874 22 4555899999984
Q ss_pred --------cCcEEEEecCCCc
Q 033857 89 --------ILRVSCVFQDFCS 101 (110)
Q Consensus 89 --------g~~~~iv~p~~~~ 101 (110)
|++++||||+..+
T Consensus 98 lA~~a~~~G~~~~ivvp~~~~ 118 (365)
T cd06446 98 TATACALFGLECEIYMGAVDV 118 (365)
T ss_pred HHHHHHHhCCCeEEEEcCCcc
Confidence 9999999998643
No 64
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.73 E-value=3.6e-18 Score=139.70 Aligned_cols=85 Identities=14% Similarity=-0.075 Sum_probs=70.2
Q ss_pred ccCCCceeEcCCccCCCC-ceEEEEeCCCCC-CCCccchHHHHHHHHHHHc----------------CCCCC---CCccc
Q 033857 14 LIGHTPMVYLNNVVDGCV-AHIAAKLEMMQP-CSSVKDRIAYSMIKDAEDK----------------GLITP---GKCFC 72 (110)
Q Consensus 14 ~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nP-tGS~KdR~A~~~i~~a~~~----------------G~~~~---g~~~~ 72 (110)
...+|||++++.+.+..+ .+||+|+|++|+ +||||+|++.+.+..+.++ +.+++ ..
T Consensus 19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 95 (376)
T TIGR01747 19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQA--- 95 (376)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCC---
Confidence 347899999999988778 699999999985 8999999999999887552 22221 23
Q ss_pred cccEEEEeCccHHHhh--------cCcEEEEecCCCcccc
Q 033857 73 FQSTLITSTKPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 73 ~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||++|+||+|++ |++++||||+.++...
T Consensus 96 ---~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k 132 (376)
T TIGR01747 96 ---TFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQER 132 (376)
T ss_pred ---EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 7999999999984 9999999999988543
No 65
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.73 E-value=4.4e-18 Score=140.00 Aligned_cols=87 Identities=16% Similarity=-0.046 Sum_probs=68.8
Q ss_pred ccCCCceeEcCCccCCCC-ceEEEEeCCCCC-CCCccchHHHHHHHHHHH--cCC--------------CCCCCcccccc
Q 033857 14 LIGHTPMVYLNNVVDGCV-AHIAAKLEMMQP-CSSVKDRIAYSMIKDAED--KGL--------------ITPGKCFCFQS 75 (110)
Q Consensus 14 ~ig~TPLv~~~~l~~~~~-~~i~~KlE~~nP-tGS~KdR~A~~~i~~a~~--~G~--------------~~~g~~~~~~~ 75 (110)
.+.+|||++++.++...+ .+||+|+|++|+ +||||+|+|.+.+..+.+ .|. .+.. +...
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~ 114 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK---LGDI 114 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh---ccCc
Confidence 567899999999987777 699999999985 999999999999988633 221 0000 0012
Q ss_pred EEEEeCccHHHhh--------cCcEEEEecCCCccc
Q 033857 76 TLITSTKPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 76 ~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
+||++|+||||++ |++++||||++++..
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~ 150 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQI 150 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHH
Confidence 6999999999985 999999999998854
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.72 E-value=1.2e-17 Score=137.92 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=70.0
Q ss_pred hhcccCC-CceeEcCCccCCC-CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig~-TPLv~~~~l~~~~-~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+.+.+|+ |||++++++++.. +++||+|+|.+||+||||+|.+...+..|.+.|.. . .|+++|+||||++
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~---~------vIaetgaGnhG~A 121 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKK---R------IIAETGAGQHGVA 121 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCC---e------EEEecCcHHHHHH
Confidence 3456775 9999999998776 68999999999999999999999999999988741 2 5677999999985
Q ss_pred --------cCcEEEEecCCC
Q 033857 89 --------ILRVSCVFQDFC 100 (110)
Q Consensus 89 --------g~~~~iv~p~~~ 100 (110)
|++|+||||+..
T Consensus 122 ~A~~aa~~Gl~c~I~mp~~d 141 (397)
T PRK04346 122 TATAAALLGLECVIYMGAED 141 (397)
T ss_pred HHHHHHHcCCcEEEEecCCc
Confidence 999999999863
No 67
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.72 E-value=1.6e-17 Score=138.22 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=68.1
Q ss_pred hhcccCCCceeEcCCccCCCC--ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~--~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+...+++|||++++++....+ ++||+|+|++||+||||||+|..++..+.++|.. . .++++|+||+|.+
T Consensus 71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~---~------~vtetgsGN~G~a 141 (427)
T PRK12391 71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIK---R------LTTETGAGQWGSA 141 (427)
T ss_pred HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCC---E------EEEccCchHHHHH
Confidence 345678999999999876554 7999999999999999999999999999998853 1 3445789999985
Q ss_pred --------cCcEEEEecCC
Q 033857 89 --------ILRVSCVFQDF 99 (110)
Q Consensus 89 --------g~~~~iv~p~~ 99 (110)
|++++||||+.
T Consensus 142 lA~aaa~~Gl~~~V~mp~~ 160 (427)
T PRK12391 142 LALACALFGLECTVFMVRV 160 (427)
T ss_pred HHHHHHHcCCcEEEEEecC
Confidence 99999999974
No 68
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.72 E-value=1.4e-17 Score=137.73 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=70.7
Q ss_pred hhcccC-CCceeEcCCccCCC-CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIG-HTPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig-~TPLv~~~~l~~~~-~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+.+.+| +|||++++++++.. +++||+|+|.+||+||||||.+..++..|.+.|. +. .|+++|+||||++
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~---~~------vI~etgsGnhG~A 125 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK---KR------LIAETGAGQHGVA 125 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC---Ce------EEEecCcHHHHHH
Confidence 456677 69999999998776 5899999999999999999999999999998873 22 5678999999985
Q ss_pred --------cCcEEEEecCCCc
Q 033857 89 --------ILRVSCVFQDFCS 101 (110)
Q Consensus 89 --------g~~~~iv~p~~~~ 101 (110)
|++++||||+..+
T Consensus 126 ~A~aaa~~Gl~~~I~m~~~d~ 146 (402)
T PRK13028 126 TATAAALFGLECEIYMGEVDI 146 (402)
T ss_pred HHHHHHHcCCCEEEEECCCcc
Confidence 9999999998643
No 69
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.71 E-value=2.3e-17 Score=129.86 Aligned_cols=76 Identities=24% Similarity=0.142 Sum_probs=67.8
Q ss_pred cCCCceeEcCCccCCCCceEEEEeCCCCCC--CCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe--CccHHHhh--
Q 033857 15 IGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS--TKPILLLK-- 88 (110)
Q Consensus 15 ig~TPLv~~~~l~~~~~~~i~~KlE~~nPt--GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~--SsGN~g~a-- 88 (110)
..+|||+++++++...+.+||+|+|++||+ ||||||.+.+++..|+++|. + +||++ |+||+|++
T Consensus 5 ~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~----~------~vv~~g~ssGN~g~alA 74 (311)
T TIGR01275 5 PWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA----D------TVITVGAIQSNHARATA 74 (311)
T ss_pred CCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC----C------EEEEcCCchhHHHHHHH
Confidence 368999999998876778999999999998 99999999999999999875 3 79998 67999985
Q ss_pred ------cCcEEEEecCCC
Q 033857 89 ------ILRVSCVFQDFC 100 (110)
Q Consensus 89 ------g~~~~iv~p~~~ 100 (110)
|+++++|||+..
T Consensus 75 ~~a~~~G~~~~ivvp~~~ 92 (311)
T TIGR01275 75 LAAKKLGLDAVLVLREKE 92 (311)
T ss_pred HHHHHhCCceEEEecCCc
Confidence 999999999864
No 70
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.71 E-value=2.7e-17 Score=143.75 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=70.2
Q ss_pred hhcccC-CCceeEcCCccCC----C--CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCcc
Q 033857 11 VTELIG-HTPMVYLNNVVDG----C--VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 11 i~~~ig-~TPLv~~~~l~~~----~--~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsG 83 (110)
+.+.+| +|||++++++++. . +++||+|+|++||+||||||+|.+++..|.+.|.. . .|+++|+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~---~------~IvetssG 389 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT---R------VIAETGAG 389 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC---C------EEEEECcH
Confidence 345688 9999999998642 2 47999999999999999999999999999998853 3 68999999
Q ss_pred HHHhh--------cCcEEEEecCCC
Q 033857 84 ILLLK--------ILRVSCVFQDFC 100 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~ 100 (110)
|||++ |++++||||+..
T Consensus 390 NhG~AlA~aaA~~Gl~c~Ivmp~~~ 414 (695)
T PRK13802 390 QHGVATATVCAMLGLKCRIYMGQID 414 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 99985 999999999863
No 71
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.71 E-value=1.3e-17 Score=133.14 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=74.9
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCC--CCccchHHHHHHHHHHHcCCCCCCCccccccEEE--Ee
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLI--TS 80 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPt--GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi--~~ 80 (110)
...++++....++|||++++++++..+.+||+|+|++||+ ||||||.+..++.+|.++|. + +|+ ++
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~------~vv~~~~ 78 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----D------VVITVGA 78 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----C------EEEEeCc
Confidence 4455677777899999999988766678999999999997 89999999999999999875 2 576 69
Q ss_pred CccHHHhh--------cCcEEEEecCCCc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCS 101 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~ 101 (110)
|+||+|++ |+++++|||+..+
T Consensus 79 ssGN~g~alA~~a~~~G~~~~ivvp~~~~ 107 (329)
T PRK14045 79 VHSNHAFVTGLAAKKLGLDAVLVLRGKEE 107 (329)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 99999985 9999999998654
No 72
>PLN02618 tryptophan synthase, beta chain
Probab=99.71 E-value=2.2e-17 Score=136.95 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=69.7
Q ss_pred HhhhcccC-CCceeEcCCccCCC------CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 9 KDVTELIG-HTPMVYLNNVVDGC------VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 9 ~~i~~~ig-~TPLv~~~~l~~~~------~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
..+.+.+| +|||++++++++.. +++||+|+|.+||+||||||.+...+..|.+.|. +. .|+++|
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~---~~------vIaesg 127 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK---KR------IIAETG 127 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC---CE------EEEEcC
Confidence 34567787 89999999998654 5899999999999999999999999998887662 32 456778
Q ss_pred ccHHHhh--------cCcEEEEecCCC
Q 033857 82 KPILLLK--------ILRVSCVFQDFC 100 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~ 100 (110)
+||||++ |++++||||+..
T Consensus 128 aGNhG~AlA~aaa~~Gl~~~I~m~~~~ 154 (410)
T PLN02618 128 AGQHGVATATVCARFGLECIVYMGAQD 154 (410)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 9999985 999999999863
No 73
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=99.71 E-value=1.4e-17 Score=138.37 Aligned_cols=89 Identities=16% Similarity=0.053 Sum_probs=77.7
Q ss_pred HHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHh
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLL 87 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~ 87 (110)
.-++.+.+-.||+.+.-.+++..+.++|+|.|+.||+||||.|||++++...-+++. .+ .||++|.||||+
T Consensus 57 ~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~-~~--------gViasSaGNha~ 127 (457)
T KOG1250|consen 57 HFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK-KA--------GVIASSAGNHAQ 127 (457)
T ss_pred hhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh-cC--------ceEEecCccHHH
Confidence 345677788999999988998889999999999999999999999999999887764 23 599999999998
Q ss_pred h--------cCcEEEEecCCCccccc
Q 033857 88 K--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 88 a--------g~~~~iv~p~~~~~~~~ 105 (110)
| |++++||||..+|...+
T Consensus 128 a~Ayaa~~LgipaTIVmP~~tp~~ki 153 (457)
T KOG1250|consen 128 AAAYAARKLGIPATIVMPVATPLMKI 153 (457)
T ss_pred HHHHHHHhcCCceEEEecCCChHHHH
Confidence 6 99999999998886543
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.70 E-value=2.8e-17 Score=131.02 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCC--CCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC--cc
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST--KP 83 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPt--GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S--sG 83 (110)
++.+...+++|||++++.+++..+.+||+|+|++||+ ||||||.+..++.+|.++|. + +||+++ +|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~----~------~vvt~g~s~g 75 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA----D------TLITAGAIQS 75 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC----C------EEEEcCcchh
Confidence 3457778999999999998776678999999999997 59999999999999998874 3 788874 59
Q ss_pred HHHhh--------cCcEEEEecCCCccc
Q 033857 84 ILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~~~~ 103 (110)
|+|++ |+++++|||+..+..
T Consensus 76 N~g~alA~~a~~~G~~~~i~vp~~~~~~ 103 (331)
T PRK03910 76 NHARQTAAAAAKLGLKCVLLLENPVPTE 103 (331)
T ss_pred HHHHHHHHHHHHhCCcEEEEEcCCCCcc
Confidence 99985 999999999988753
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.66 E-value=1.5e-16 Score=127.14 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=71.8
Q ss_pred HHhhhcccCCCceeEcCCccCCCC--ceEEEEeCCCCCC---CCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe--
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS-- 80 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~--~~i~~KlE~~nPt---GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~-- 80 (110)
+..+...+|+|||++++++....+ .+||+|+|++||+ ||+|||.+..++.+|+++|. . +|+++
T Consensus 6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~------~vvs~G~ 75 (337)
T PRK12390 6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA----D------TLVSIGG 75 (337)
T ss_pred CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC----C------EEEEeCC
Confidence 345666789999999998876556 7999999999998 77799999999999999886 3 78887
Q ss_pred CccHHHhh--------cCcEEEEecCCCc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCS 101 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~ 101 (110)
|+||+|++ |+++++|+|+..|
T Consensus 76 s~GN~g~alA~aa~~~G~~~~iv~~~~~p 104 (337)
T PRK12390 76 VQSNHTRQVAAVAAHLGMKCVLVQENWVN 104 (337)
T ss_pred CccHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 89999985 9999999877655
No 76
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.66 E-value=1.5e-16 Score=137.00 Aligned_cols=80 Identities=18% Similarity=0.053 Sum_probs=69.0
Q ss_pred hcccC-CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 12 TELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 12 ~~~ig-~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
.+.+| +|||++++++++..+.+||+|+|.+||+||||+|.+...+..|.+.|. +. .|+++|+||||++
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~---~~------vi~e~gsGnhG~A~A 335 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK---TR------IIAETGAGQHGVATA 335 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC---CE------EEEecChHHHHHHHH
Confidence 44566 799999999987678899999999999999999999999999988762 32 4668999999985
Q ss_pred ------cCcEEEEecCCC
Q 033857 89 ------ILRVSCVFQDFC 100 (110)
Q Consensus 89 ------g~~~~iv~p~~~ 100 (110)
|++++||||+..
T Consensus 336 ~~aa~~Gl~~~I~m~~~~ 353 (610)
T PRK13803 336 TACALFGLKCTIFMGEED 353 (610)
T ss_pred HHHHHcCCcEEEEEeCCc
Confidence 999999999874
No 77
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.64 E-value=2.8e-16 Score=123.86 Aligned_cols=75 Identities=24% Similarity=0.215 Sum_probs=65.6
Q ss_pred CceeEcCCccCCC--CceEEEEeCCCCCCC---CccchHHHHHHHHHHHcCCCCCCCccccccEEEEe--CccHHHhh--
Q 033857 18 TPMVYLNNVVDGC--VAHIAAKLEMMQPCS---SVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS--TKPILLLK-- 88 (110)
Q Consensus 18 TPLv~~~~l~~~~--~~~i~~KlE~~nPtG---S~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~--SsGN~g~a-- 88 (110)
|||++++++.+.. +.+||+|+|++||+| |+|||++.+++.+|+++|. + +||++ |+||+|.+
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~----~------~vv~~ggs~GN~g~alA 70 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA----D------TLVTVGGIQSNHTRQVA 70 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC----C------EEEECCCchhHHHHHHH
Confidence 8999999987655 578999999999994 5699999999999998875 3 68988 79999985
Q ss_pred ------cCcEEEEecCCCcc
Q 033857 89 ------ILRVSCVFQDFCSN 102 (110)
Q Consensus 89 ------g~~~~iv~p~~~~~ 102 (110)
|+++++|||+..+.
T Consensus 71 ~~a~~~G~~~~i~v~~~~~~ 90 (307)
T cd06449 71 AVAAKLGLKCVLVQENWVPY 90 (307)
T ss_pred HHHHHcCCeEEEEecCCCCc
Confidence 99999999998773
No 78
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.62 E-value=8.3e-16 Score=122.98 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=69.5
Q ss_pred HhhhcccCCCceeEcCCccCCCC--ceEEEEeCCCCCC---CCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe--C
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS--T 81 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~--~~i~~KlE~~nPt---GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~--S 81 (110)
.++.-.+|+|||++++++++..+ .+||+|+|++||+ ||+|||.+..++.+|+++|. + +|+++ |
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~----~------~vvs~ggs 75 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC----T------TLVSIGGI 75 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC----C------EEEECCCC
Confidence 34555689999999999987655 4999999999987 66799999999999999885 2 68876 8
Q ss_pred ccHHHhh--------cCcEEEEecCCC
Q 033857 82 KPILLLK--------ILRVSCVFQDFC 100 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~ 100 (110)
+||+|.+ |++++||||+..
T Consensus 76 ~gN~g~alA~~a~~~Gl~~~iv~~~~~ 102 (337)
T TIGR01274 76 QSNQTRQVAAVAAHLGMKCVLVQENWV 102 (337)
T ss_pred cchHHHHHHHHHHHcCCcEEEEeccCC
Confidence 8999985 999999999864
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.57 E-value=3.2e-15 Score=124.34 Aligned_cols=85 Identities=20% Similarity=0.078 Sum_probs=72.3
Q ss_pred ccCCCceeEcCCccCCCC---ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 14 LIGHTPMVYLNNVVDGCV---AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 14 ~ig~TPLv~~~~l~~~~~---~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
..|.||+++.+++....+ .++|+|.|+.|||||||||++..++..+.+.|. . +|+++||||+|.+
T Consensus 73 ~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----~------~I~~ASSGnTgAs~a 142 (411)
T COG0498 73 GEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----K------TILCASSGNTGASAA 142 (411)
T ss_pred hhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC----C------EEEEeCCchHHHHHH
Confidence 357899999877766555 359999999999999999999999999999874 3 7999999999963
Q ss_pred ------cCcEEEEecCCCcccccccc
Q 033857 89 ------ILRVSCVFQDFCSNWVYTAQ 108 (110)
Q Consensus 89 ------g~~~~iv~p~~~~~~~~~~~ 108 (110)
|+++.|++|++--...+++|
T Consensus 143 aya~rag~~v~Vl~P~g~vs~~k~~q 168 (411)
T COG0498 143 AYAARAGLKVFVLYPKGKVSPGKLAQ 168 (411)
T ss_pred HHhccCCCeEEEEecCCCCCHHHHHH
Confidence 99999999999666666665
No 80
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=98.99 E-value=8.4e-10 Score=92.99 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=56.8
Q ss_pred CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHH---HHHHHHcCCCCCCCccccccEEEEeCccHHHhh-----
Q 033857 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKCFCFQSTLITSTKPILLLK----- 88 (110)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~---i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a----- 88 (110)
.+||.++. .++|++-++.+||||||||++..+ +..+.++.. +. .+|+++||||+|.|
T Consensus 87 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~-----~~Il~ATSGdTG~Aa~aaf 151 (460)
T cd01560 87 IAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ER-----ITILVATSGDTGSAAIEGF 151 (460)
T ss_pred ccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CC-----eEEEEcCCCcHHHHHHHHH
Confidence 37777654 368999999999999999998765 666655411 11 27999999999964
Q ss_pred ----cCcEEEEecCCCcccccccc
Q 033857 89 ----ILRVSCVFQDFCSNWVYTAQ 108 (110)
Q Consensus 89 ----g~~~~iv~p~~~~~~~~~~~ 108 (110)
|+++.|++|++--..++..|
T Consensus 152 ~~~~gi~v~Vl~P~g~vs~~Q~~Q 175 (460)
T cd01560 152 RGKPNVDVVVLYPKGGVSPIQELQ 175 (460)
T ss_pred hCcCCCEEEEEEcCCCCCHHHHHH
Confidence 88999999997333444433
No 81
>PRK09225 threonine synthase; Validated
Probab=98.87 E-value=2.9e-09 Score=89.85 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=56.6
Q ss_pred CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHH---HHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-----
Q 033857 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK----- 88 (110)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~---~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a----- 88 (110)
.+||.++. .++|+.--+.+||||||||++.. ++..+.+ |. .. +|+++||||+|.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~---~~------~Il~ATSGdtG~Aa~aaf 150 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE---KI------TILGATSGDTGSAAAEAF 150 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC---Cc------EEEEcCCCcHHHHHHHHH
Confidence 47877763 24788777889999999999987 7877876 31 12 7999999999963
Q ss_pred ----cCcEEEEecCCCcccccccc
Q 033857 89 ----ILRVSCVFQDFCSNWVYTAQ 108 (110)
Q Consensus 89 ----g~~~~iv~p~~~~~~~~~~~ 108 (110)
|+++.|++|++--..++..|
T Consensus 151 ~~~~gi~~~V~~P~g~vs~~q~~Q 174 (462)
T PRK09225 151 RGKPNVRVVILYPKGKVSPVQEKQ 174 (462)
T ss_pred hCcCCCEEEEEEcCCCCCHHHHHH
Confidence 88999999997333444433
No 82
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.39 E-value=3e-07 Score=76.80 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=63.3
Q ss_pred hhhccc-CCCceeEcCCccCCC--CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHH
Q 033857 10 DVTELI-GHTPMVYLNNVVDGC--VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILL 86 (110)
Q Consensus 10 ~i~~~i-g~TPLv~~~~l~~~~--~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g 86 (110)
.|...+ ..|||++..+|...+ +++||+|.|..|++||+|..-|..-+.-|.+.|.- . .|.|--.|-+|
T Consensus 114 eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkk--n-------viaETGAGQhG 184 (477)
T KOG1395|consen 114 EIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKK--N-------VIAETGAGQHG 184 (477)
T ss_pred HHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhccc--c-------eeeccCCCccc
Confidence 444444 469999999886643 68999999999999999999988887777777742 1 46677889999
Q ss_pred hh--------cCcEEEEecC
Q 033857 87 LK--------ILRVSCVFQD 98 (110)
Q Consensus 87 ~a--------g~~~~iv~p~ 98 (110)
++ |+.|+|+|-.
T Consensus 185 vatA~a~a~FGl~C~v~mgA 204 (477)
T KOG1395|consen 185 VATATACAKFGLDCTVYMGA 204 (477)
T ss_pred hHHHHHHHHhCCceEEEech
Confidence 85 8999998853
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.02 E-value=5.8e-06 Score=68.35 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred hhcccC-CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig-~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+.+..| .|||....+++...+++||+|-|-+|-+|++|..=++.-+.-|.+-|.- . -|.|--.|-||+|
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~---r------iIAETGAGQHGVAt 119 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKT---R------IIAETGAGQHGVAT 119 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCc---e------EEeecCCCcccHHH
Confidence 344566 5999999999998899999999999999999999888888778776642 1 3568888999985
Q ss_pred -------cCcEEEEecC
Q 033857 89 -------ILRVSCVFQD 98 (110)
Q Consensus 89 -------g~~~~iv~p~ 98 (110)
|++|.|||-.
T Consensus 120 Ata~A~fgl~C~iYMGa 136 (396)
T COG0133 120 ATAAALFGLECVIYMGA 136 (396)
T ss_pred HHHHHHhCCceEEEecc
Confidence 8999999974
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=97.94 E-value=1.8e-05 Score=65.85 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=58.2
Q ss_pred cc-CCCceeEcCCccCC--CCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEE-EeCccHHHhh-
Q 033857 14 LI-GHTPMVYLNNVVDG--CVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLI-TSTKPILLLK- 88 (110)
Q Consensus 14 ~i-g~TPLv~~~~l~~~--~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi-~~SsGN~g~a- 88 (110)
.+ ..|||+|..+|-+- ..++||.|.|+..|+||+|...|..-.--|..+|.- +|+ |--+|--|.+
T Consensus 74 ~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~----------rl~TETGAGQWGsAl 143 (432)
T COG1350 74 QIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAK----------RLTTETGAGQWGSAL 143 (432)
T ss_pred HhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCce----------eeecccCCchHHHHH
Confidence 35 47999999988653 358999999999999999999998888888777752 454 4445655543
Q ss_pred -------cCcEEEEecC
Q 033857 89 -------ILRVSCVFQD 98 (110)
Q Consensus 89 -------g~~~~iv~p~ 98 (110)
|++++|+|-.
T Consensus 144 slA~alf~lk~~V~Mvr 160 (432)
T COG1350 144 SLAAALFGLKATVFMVR 160 (432)
T ss_pred HHHHHHhCceeEEEEEe
Confidence 8899998854
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0077 Score=50.21 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=64.2
Q ss_pred cCCCceeEcCCccC--------CCCceEEEEeCCCCCC-CCccchH-HHHHHHHHH----HcCCCCCCCc----------
Q 033857 15 IGHTPMVYLNNVVD--------GCVAHIAAKLEMMQPC-SSVKDRI-AYSMIKDAE----DKGLITPGKC---------- 70 (110)
Q Consensus 15 ig~TPLv~~~~l~~--------~~~~~i~~KlE~~nPt-GS~KdR~-A~~~i~~a~----~~G~~~~g~~---------- 70 (110)
+-..||++.+..-+ ....++|+|+++.-|- ||+|.|+ .|-.++.|+ +.|.++...-
T Consensus 76 iIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~ 155 (443)
T COG3048 76 IIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFK 155 (443)
T ss_pred eeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHH
Confidence 45678887765421 2345899999998885 9999998 455555554 5666654321
Q ss_pred -cccccEEEEeCccHHHhh--------cCcEEEEecCCCccccc
Q 033857 71 -FCFQSTLITSTKPILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 71 -~~~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
|.-+-.|...|+||.|++ |.++++-|...+..|.+
T Consensus 156 ~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKK 199 (443)
T COG3048 156 DFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKK 199 (443)
T ss_pred HHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHH
Confidence 222336889999999984 78999999988888754
No 86
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=89.28 E-value=0.42 Score=39.44 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=59.2
Q ss_pred HhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCC--CCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC--ccH
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST--KPI 84 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPt--GS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S--sGN 84 (110)
.++.-..+.||+-+++++++..+.+||+|-|-..+- |--|.|=.-.++.+|.++|. + ++|+.- =-|
T Consensus 7 ~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~----d------TlvT~GgiQSN 76 (323)
T COG2515 7 PRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA----D------TLVTYGGIQSN 76 (323)
T ss_pred CccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC----c------EEEEecccchh
Confidence 344445678999999999988889999999988443 67899999999999998875 2 676643 235
Q ss_pred HHhh--------cCcEEEEec
Q 033857 85 LLLK--------ILRVSCVFQ 97 (110)
Q Consensus 85 ~g~a--------g~~~~iv~p 97 (110)
|..+ |++++.+.-
T Consensus 77 h~r~tAavA~~lGl~~v~ile 97 (323)
T COG2515 77 HVRQTAAVAAKLGLKCVLILE 97 (323)
T ss_pred HHHHHHHHHHhcCCcEEEEEe
Confidence 5431 888877653
No 87
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=41.63 E-value=38 Score=21.47 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCCCCCccccccEEEEeCccH
Q 033857 51 IAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPI 84 (110)
Q Consensus 51 ~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN 84 (110)
-....+.++.++|.+++|+ .++..+.|.
T Consensus 52 ~~~~~L~~~~~~g~~~~Gd------~vl~~~~G~ 79 (90)
T PF08541_consen 52 SIPINLADALEEGRIKPGD------RVLLVGFGA 79 (90)
T ss_dssp HHHHHHHHHHHTTSSCTTE------EEEEEEEET
T ss_pred hHHHHHHHHHHcCCCCCCC------EEEEEEEEh
Confidence 3556788899999999998 777776663
No 88
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=39.67 E-value=46 Score=21.62 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=27.4
Q ss_pred CCCCCCCccchHHHHHHHHHHHcCCCC-CCCccccccEEEE
Q 033857 40 MMQPCSSVKDRIAYSMIKDAEDKGLIT-PGKCFCFQSTLIT 79 (110)
Q Consensus 40 ~~nPtGS~KdR~A~~~i~~a~~~G~~~-~g~~~~~~~~vi~ 79 (110)
+..|+|. |.|....+..-+.+.+... .-.+|+|...+..
T Consensus 32 Y~sP~Gk-klRs~~ev~~YL~~~~~~~~~~~~F~F~~~~~~ 71 (77)
T smart00391 32 YISPCGK-KLRSKSELARYLHKNGDLSLDLECFDFNATVPV 71 (77)
T ss_pred EECCCCC-eeeCHHHHHHHHHhCCCcccccccccCcCCccc
Confidence 4489995 8888888888887776532 1256888876543
No 89
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=34.31 E-value=80 Score=22.28 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred hhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 11 i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
....++.++...+..+.+ .+++++= +++|........+....|..++|+ ++..+||.++..
T Consensus 50 a~~~~~~~~~~~~~~~~~--~aDlv~i--------avpDdaI~~va~~La~~~~~~~g~-------iVvHtSGa~~~~ 110 (127)
T PF10727_consen 50 AAAFIGAGAILDLEEILR--DADLVFI--------AVPDDAIAEVAEQLAQYGAWRPGQ-------IVVHTSGALGSD 110 (127)
T ss_dssp HHC--TT-----TTGGGC--C-SEEEE---------S-CCHHHHHHHHHHCC--S-TT--------EEEES-SS--GG
T ss_pred cccccccccccccccccc--cCCEEEE--------EechHHHHHHHHHHHHhccCCCCc-------EEEECCCCChHH
Confidence 334455566555443322 3455542 468887777777777777788885 999999999974
No 90
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=26.77 E-value=58 Score=22.25 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=22.8
Q ss_pred CceEEEEeCCCCCCCCccchHHHHHHHHHHHcC
Q 033857 31 VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63 (110)
Q Consensus 31 ~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G 63 (110)
...+-+||+++|-++|--..-.+.+|.++.++|
T Consensus 44 ~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g 76 (99)
T PF09345_consen 44 PITFNFKLSYFNTSSSKALMDIFDLLEDAAQKG 76 (99)
T ss_pred cEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcC
Confidence 468999999999655433444666677776655
No 91
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=24.38 E-value=64 Score=26.52 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=38.6
Q ss_pred CceEEEEeCCCCCCCCccchHHHHHHHHHHH---cCCCCCCCccccccEEEEeCcc
Q 033857 31 VAHIAAKLEMMQPCSSVKDRIAYSMIKDAED---KGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 31 ~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~---~G~~~~g~~~~~~~~vi~~SsG 83 (110)
|.-+++|.-.-|-..|.|-| |+..+..+-+ +=....|++|-|-+++|+.|-.
T Consensus 100 gK~lLlKhPte~IN~SQ~~R-a~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~p 154 (304)
T COG2248 100 GKLLLLKHPTENINRSQRRR-AYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPP 154 (304)
T ss_pred CcEEEecCchhhhCHHHHHH-HHHHHHHhhhhcceeEecCCceEEeCCEEEEecCC
Confidence 55799999888888999955 5556655543 2234567889999999999865
Done!