Query 033857
Match_columns 110
No_of_seqs 120 out of 1181
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vc3_A Beta-cyanoalnine syntha 100.0 1.4E-29 4.8E-34 201.6 9.6 97 4-105 22-126 (344)
2 3dwg_A Cysteine synthase B; su 99.9 1.2E-25 4.2E-30 177.0 9.8 94 5-104 3-111 (325)
3 2q3b_A Cysteine synthase A; py 99.9 7.5E-25 2.6E-29 170.5 9.5 94 4-103 3-104 (313)
4 1y7l_A O-acetylserine sulfhydr 99.9 7.5E-25 2.6E-29 170.7 9.0 91 6-104 2-100 (316)
5 2egu_A Cysteine synthase; O-ac 99.9 8.6E-25 2.9E-29 169.9 9.1 92 6-103 3-102 (308)
6 3tbh_A O-acetyl serine sulfhyd 99.9 1.3E-24 4.6E-29 171.8 9.3 95 3-104 7-110 (334)
7 1z7w_A Cysteine synthase; tran 99.9 1.5E-24 5E-29 169.7 9.0 94 6-104 4-105 (322)
8 2v03_A Cysteine synthase B; py 99.9 2.3E-24 8E-29 167.6 10.1 90 9-104 2-99 (303)
9 4aec_A Cysteine synthase, mito 99.9 1.5E-24 5.2E-29 178.8 9.5 98 2-104 108-213 (430)
10 2pqm_A Cysteine synthase; OASS 99.9 3.1E-24 1.1E-28 170.1 8.8 92 6-103 12-115 (343)
11 3pc3_A CG1753, isoform A; CBS, 99.9 4.6E-24 1.6E-28 176.8 7.8 96 3-104 46-151 (527)
12 1ve1_A O-acetylserine sulfhydr 99.9 1.8E-23 6E-28 162.2 10.1 90 10-103 2-99 (304)
13 1jbq_A B, cystathionine beta-s 99.9 6.8E-24 2.3E-28 174.6 7.5 93 5-103 96-198 (435)
14 3l6b_A Serine racemase; pyrido 99.9 2.3E-24 8E-29 171.1 3.8 96 3-104 11-114 (346)
15 1ve5_A Threonine deaminase; ri 99.9 4.2E-23 1.4E-27 160.3 4.4 90 3-104 6-103 (311)
16 1o58_A O-acetylserine sulfhydr 99.9 1.1E-21 3.6E-26 152.6 8.7 82 10-103 13-102 (303)
17 2gn0_A Threonine dehydratase c 99.9 6.6E-23 2.3E-27 162.2 1.1 93 3-104 26-126 (342)
18 3aey_A Threonine synthase; PLP 99.8 7.8E-22 2.7E-26 156.0 7.0 85 9-103 20-115 (351)
19 1v71_A Serine racemase, hypoth 99.8 4.3E-23 1.5E-27 161.4 -0.5 92 3-103 12-111 (323)
20 2d1f_A Threonine synthase; ami 99.8 5.6E-22 1.9E-26 157.8 5.7 85 9-103 30-123 (360)
21 2zsj_A Threonine synthase; PLP 99.8 5.8E-22 2E-26 156.8 4.8 85 9-103 22-117 (352)
22 4h27_A L-serine dehydratase/L- 99.8 1.2E-21 4.1E-26 156.7 5.9 85 9-103 38-130 (364)
23 2rkb_A Serine dehydratase-like 99.8 2E-21 7E-26 151.4 6.4 81 13-103 3-91 (318)
24 1p5j_A L-serine dehydratase; l 99.8 1.4E-21 4.8E-26 156.9 5.0 87 8-104 37-131 (372)
25 3ss7_X D-serine dehydratase; t 99.8 5.1E-21 1.8E-25 156.9 6.7 91 15-105 76-199 (442)
26 3iau_A Threonine deaminase; py 99.8 1.4E-21 4.7E-26 156.0 2.2 85 10-103 53-145 (366)
27 1v8z_A Tryptophan synthase bet 99.8 2E-20 6.7E-25 149.0 6.4 83 8-99 40-132 (388)
28 1tdj_A Biosynthetic threonine 99.8 5.4E-21 1.8E-25 160.7 3.1 85 10-103 24-116 (514)
29 4d9b_A D-cysteine desulfhydras 99.8 2.1E-20 7.3E-25 147.8 5.6 87 6-102 21-119 (342)
30 1tzj_A ACC deaminase, 1-aminoc 99.8 2.1E-20 7.2E-25 146.3 5.5 88 6-103 4-106 (338)
31 1f2d_A 1-aminocyclopropane-1-c 99.8 1.4E-20 4.7E-25 148.1 4.3 85 7-101 5-104 (341)
32 4d9i_A Diaminopropionate ammon 99.8 5.8E-20 2E-24 148.0 7.2 87 13-104 40-150 (398)
33 1qop_B Tryptophan synthase bet 99.8 1.4E-19 4.6E-24 145.4 8.0 80 11-99 48-136 (396)
34 1wkv_A Cysteine synthase; homo 99.8 1.1E-19 3.9E-24 147.4 6.9 87 8-103 84-182 (389)
35 1j0a_A 1-aminocyclopropane-1-c 99.8 1.3E-19 4.5E-24 141.7 5.2 89 5-103 9-110 (325)
36 2o2e_A Tryptophan synthase bet 99.8 1.6E-18 5.4E-23 141.4 8.6 80 12-100 75-164 (422)
37 1x1q_A Tryptophan synthase bet 99.7 7.3E-19 2.5E-23 142.7 5.7 78 13-99 72-159 (418)
38 1e5x_A Threonine synthase; thr 99.7 1.8E-18 6.2E-23 143.5 6.4 81 15-103 128-222 (486)
39 1kl7_A Threonine synthase; thr 99.7 2.5E-17 8.5E-22 138.2 7.5 78 14-102 93-191 (514)
40 4f4f_A Threonine synthase; str 99.6 3.6E-15 1.2E-19 124.0 7.7 71 17-103 93-177 (468)
41 1vb3_A Threonine synthase; PLP 99.5 1.5E-14 5.1E-19 118.0 7.3 70 16-103 82-165 (428)
42 3v7n_A Threonine synthase; ssg 99.5 3.9E-14 1.3E-18 118.5 7.2 74 18-103 103-190 (487)
43 1vp8_A Hypothetical protein AF 23.9 1.3E+02 0.0043 22.4 4.8 46 42-96 22-73 (201)
No 1
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=99.96 E-value=1.4e-29 Score=201.58 Aligned_cols=97 Identities=47% Similarity=0.688 Sum_probs=89.7
Q ss_pred hhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCcc
Q 033857 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 4 ~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsG 83 (110)
..+|+++|.++||+|||+++++|++..+++||+|+|++||+||||||+|+++|.+|+++|.+++|+ .+||++|+|
T Consensus 22 ~~~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~-----~~Vv~aSsG 96 (344)
T 3vc3_A 22 STNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGK-----TTLIEPTSG 96 (344)
T ss_dssp CCSCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTT-----CEEEEECSS
T ss_pred hhhhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCC-----CEEEEeCCc
Confidence 356889999999999999999999988999999999999999999999999999999999999985 379999999
Q ss_pred HHHhh--------cCcEEEEecCCCccccc
Q 033857 84 ILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
|||++ |++++||||++++...+
T Consensus 97 N~g~alA~~aa~~G~~~~IvmP~~~~~~k~ 126 (344)
T 3vc3_A 97 NMGISMAFMAAMKGYKMVLTMPSYTSLERR 126 (344)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCChHHHH
Confidence 99985 99999999999887654
No 2
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=99.92 E-value=1.2e-25 Score=177.00 Aligned_cols=94 Identities=31% Similarity=0.385 Sum_probs=86.7
Q ss_pred hhhHHhhhcccCCCceeEcCCccCC-------CCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEE
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDG-------CVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTL 77 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~-------~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~v 77 (110)
|+++++|.+.+|+|||++++++++. .+.+||+|+|++||+||||||+|.++|.+|.++|.++++. +|
T Consensus 3 ~~~~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~------~v 76 (325)
T 3dwg_A 3 MTRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGA------TI 76 (325)
T ss_dssp CCEESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTC------EE
T ss_pred cccccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCC------EE
Confidence 4678999999999999999999876 6789999999999999999999999999999999999987 89
Q ss_pred EEeCccHHHhh--------cCcEEEEecCCCcccc
Q 033857 78 ITSTKPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 78 i~~SsGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|++|+||||++ |+++++|||+..+...
T Consensus 77 v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k 111 (325)
T 3dwg_A 77 LEPTSGNTGISLAMAARLKGYRLICVMPENTSVER 111 (325)
T ss_dssp EEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHH
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence 99999999985 9999999999987653
No 3
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=99.91 E-value=7.5e-25 Score=170.50 Aligned_cols=94 Identities=39% Similarity=0.555 Sum_probs=86.0
Q ss_pred hhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCcc
Q 033857 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 4 ~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsG 83 (110)
.++++++|.+.+++|||++++++++..+.+||+|+|++||+||||||+|++++.+|.++|.+++|. +||++|+|
T Consensus 3 ~~~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~------~vv~assG 76 (313)
T 2q3b_A 3 HMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDT------IILEPTSG 76 (313)
T ss_dssp -CCCCSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTC------EEEEECSS
T ss_pred ccchhhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCC------EEEEeCCC
Confidence 346788999999999999999998777889999999999999999999999999999999988887 89999999
Q ss_pred HHHhh--------cCcEEEEecCCCccc
Q 033857 84 ILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~~~~ 103 (110)
|||++ |+++++|||+..+..
T Consensus 77 N~g~alA~~a~~~G~~~~iv~p~~~~~~ 104 (313)
T 2q3b_A 77 NTGIALAMVCAARGYRCVLTMPETMSLE 104 (313)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCHH
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCHH
Confidence 99985 999999999988764
No 4
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=99.91 E-value=7.5e-25 Score=170.69 Aligned_cols=91 Identities=27% Similarity=0.323 Sum_probs=83.5
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
++++++.+.+++|||++++++ + .+.+||+|+|++||+||||||+|.+++.+|.++|.++++. +|+++|||||
T Consensus 2 ~~~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~------~vv~~ssGN~ 73 (316)
T 1y7l_A 2 AIYADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGK------EIVDATSGNT 73 (316)
T ss_dssp CCCSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTC------EEEESCCSHH
T ss_pred cchhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCC------EEEEeCCcHH
Confidence 467889999999999999998 6 7889999999999999999999999999999999988887 8999999999
Q ss_pred Hhh--------cCcEEEEecCCCcccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|++ |+++++|||+..+...
T Consensus 74 g~a~A~~a~~~G~~~~iv~p~~~~~~k 100 (316)
T 1y7l_A 74 GIALAYVAAARGYKITLTMPETMSLER 100 (316)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTSCHHH
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHH
Confidence 985 9999999999887643
No 5
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=99.91 E-value=8.6e-25 Score=169.86 Aligned_cols=92 Identities=41% Similarity=0.506 Sum_probs=85.0
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
+++++|.+.+++|||++++++++..+.+||+|+|++||+||||||+|++++.+|.++|.+++|. +|+++|+|||
T Consensus 3 ~~~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~------~vv~assGN~ 76 (308)
T 2egu_A 3 RTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGD------TIVEPTSGNT 76 (308)
T ss_dssp CCCSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTC------EEEEECCHHH
T ss_pred hHHHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCC------EEEEeCCCHH
Confidence 4678899999999999999998777899999999999999999999999999999999988887 8999999999
Q ss_pred Hhh--------cCcEEEEecCCCccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~ 103 (110)
|++ |+++++|||+..+..
T Consensus 77 g~a~A~~a~~~G~~~~iv~p~~~~~~ 102 (308)
T 2egu_A 77 GIGLAMVAAAKGYKAVLVMPDTMSLE 102 (308)
T ss_dssp HHHHHHHHHHHTCEEEEEEESCSCHH
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 985 999999999988754
No 6
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=99.91 E-value=1.3e-24 Score=171.83 Aligned_cols=95 Identities=27% Similarity=0.458 Sum_probs=85.7
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccE-EEEeC
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQST-LITST 81 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~-vi~~S 81 (110)
+...++++|.+.+++|||++++++ ...+.+||+|+|++||+||||||+|.+++.+|+++|.+++|+ + ||++|
T Consensus 7 ~i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~------~vvv~aS 79 (334)
T 3tbh_A 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGK------SIVVESS 79 (334)
T ss_dssp TTTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTT------CEEEEEC
T ss_pred hHHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCC------eEEEEeC
Confidence 345577889999999999999999 777899999999999999999999999999999999999997 6 59999
Q ss_pred ccHHHhh--------cCcEEEEecCCCcccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||||++ |++++||||+.++...
T Consensus 80 sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k 110 (334)
T 3tbh_A 80 SGNTGVSLAHLGAIRGYKVIITMPESMSLER 110 (334)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 9999985 9999999999987643
No 7
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=99.91 E-value=1.5e-24 Score=169.71 Aligned_cols=94 Identities=56% Similarity=0.814 Sum_probs=85.3
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
++++++...+++|||++++++++..+.+||+|+|++||+||||||+|.++|.+|.++|.++||+ .+|+++|+|||
T Consensus 4 ~~~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~-----~~vv~assGN~ 78 (322)
T 1z7w_A 4 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGE-----SVLIEPTSGNT 78 (322)
T ss_dssp CCCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTT-----CEEEEECSSHH
T ss_pred hhhhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCC-----CEEEEeCCCHH
Confidence 4678899999999999999998777889999999999999999999999999999999998884 28999999999
Q ss_pred Hhh--------cCcEEEEecCCCcccc
Q 033857 86 LLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|++ |+++++|||+.++...
T Consensus 79 g~alA~aa~~~G~~~~iv~p~~~~~~k 105 (322)
T 1z7w_A 79 GVGLAFTAAAKGYKLIITMPASMSTER 105 (322)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 985 9999999999877543
No 8
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=99.91 E-value=2.3e-24 Score=167.58 Aligned_cols=90 Identities=34% Similarity=0.401 Sum_probs=82.4
Q ss_pred HhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+++.+.+++|||++++++++..+.+||+|+|++||+||||||+|.+++.+|.++|.+++|. +|+++|+||||++
T Consensus 2 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~------~vv~~ssGN~g~a 75 (303)
T 2v03_A 2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD------VLIEATSGNTGIA 75 (303)
T ss_dssp CSGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTC------EEEEECSSHHHHH
T ss_pred cchHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCC------EEEEECCcHHHHH
Confidence 4678889999999999998777889999999999999999999999999999999988887 8999999999985
Q ss_pred --------cCcEEEEecCCCcccc
Q 033857 89 --------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 89 --------g~~~~iv~p~~~~~~~ 104 (110)
|+++++|||+.++...
T Consensus 76 ~A~~a~~~G~~~~iv~p~~~~~~k 99 (303)
T 2v03_A 76 LAMIAALKGYRMKLLMPDNMSQER 99 (303)
T ss_dssp HHHHHHHHTCEEEEEEETTSCHHH
T ss_pred HHHHHHHcCCcEEEEECCCCCHHH
Confidence 9999999999877543
No 9
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=99.91 E-value=1.5e-24 Score=178.76 Aligned_cols=98 Identities=50% Similarity=0.752 Sum_probs=89.7
Q ss_pred cchhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 2 ~~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
.+.+++++++.+.+|+|||++++++++..+.+||+|+|++||+||||||+|+++|.+|+++|.+++|. .+||++|
T Consensus 108 ~~~~~~~~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~-----~~VV~aS 182 (430)
T 4aec_A 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGK-----SVLVEPT 182 (430)
T ss_dssp TSSCSCBSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTT-----CEEEEEC
T ss_pred ccccchhhhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC-----cEEEEEC
Confidence 45678889999999999999999998888899999999999999999999999999999999999985 2799999
Q ss_pred ccHHHhh--------cCcEEEEecCCCcccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
+||||++ |++++||||+..+...
T Consensus 183 sGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k 213 (430)
T 4aec_A 183 SGNTGIGLAFIAASRGYRLILTMPASMSMER 213 (430)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred CCHHHHHHHHHHHHhCCEEEEEEcCCCCHHH
Confidence 9999985 9999999999987653
No 10
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=99.90 E-value=3.1e-24 Score=170.08 Aligned_cols=92 Identities=33% Similarity=0.425 Sum_probs=84.5
Q ss_pred hhHHhhhcccCCCceeEcCCccC----CCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVD----GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST 81 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~----~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S 81 (110)
++++++...+++|||++++++++ ..+.+||+|+|++||+||||||+|.+++.+|.++|.+++|. +||++|
T Consensus 12 ~~~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~------~vv~aS 85 (343)
T 2pqm_A 12 RIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGM------EIIEST 85 (343)
T ss_dssp CEESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTC------EEEEEC
T ss_pred hHHHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCC------EEEEEC
Confidence 45678999999999999999987 66789999999999999999999999999999999988887 899999
Q ss_pred ccHHHhh--------cCcEEEEecCCCccc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
|||+|++ |+++++|||+.++..
T Consensus 86 sGN~g~alA~aa~~~G~~~~iv~p~~~~~~ 115 (343)
T 2pqm_A 86 SGNTGIALCQAGAVFGYRVNIAMPSTMSVE 115 (343)
T ss_dssp SSHHHHHHHHHHHHHTCCEEEEEETTSCHH
T ss_pred CcHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 9999985 999999999987754
No 11
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.90 E-value=4.6e-24 Score=176.77 Aligned_cols=96 Identities=36% Similarity=0.513 Sum_probs=87.1
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCC--ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS 80 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~--~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~ 80 (110)
...++++++.+.+|+|||++++++++..+ ++||+|+|++||+||||||+|++++.+|+++|.++||. +||++
T Consensus 46 ~~~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~------~vv~~ 119 (527)
T 3pc3_A 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGY------TIIEP 119 (527)
T ss_dssp CCCSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTC------EEEEE
T ss_pred chhhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCC------EEEEe
Confidence 34577889999999999999999876555 79999999999999999999999999999999999998 89999
Q ss_pred CccHHHhh--------cCcEEEEecCCCcccc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
|+||||++ |++++||||+..+...
T Consensus 120 ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k 151 (527)
T 3pc3_A 120 TSGNTGIGLAMACAVKGYKCIIVMPEKMSNEK 151 (527)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHH
T ss_pred CCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHH
Confidence 99999985 9999999999887643
No 12
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=99.89 E-value=1.8e-23 Score=162.21 Aligned_cols=90 Identities=34% Similarity=0.460 Sum_probs=79.9
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+|.+.+|+|||++++++++..+.+||+|+|++||+||||||+|.+++.+|.++|.+++|+ +.+||++|+||||++
T Consensus 2 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~----~~~vv~assGN~g~a~ 77 (304)
T 1ve1_A 2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS----GQVIVEPTSGNTGIGL 77 (304)
T ss_dssp CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTS----CCEEEESCCSHHHHHH
T ss_pred ChHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCC----ccEEEEeCCcHHHHHH
Confidence 367889999999999998777889999999999999999999999999999999887653 016999999999985
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 78 A~~a~~~G~~~~i~~p~~~~~~ 99 (304)
T 1ve1_A 78 AMIAASRGYRLILTMPAQMSEE 99 (304)
T ss_dssp HHHHHHHTCEEEEEEETTCCHH
T ss_pred HHHHHHcCCcEEEEeCCCCCHH
Confidence 999999999987754
No 13
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=99.89 E-value=6.8e-24 Score=174.59 Aligned_cols=93 Identities=34% Similarity=0.420 Sum_probs=84.4
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCC--ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~--~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
.+++++|.+.+++|||++++++++..+ ++||+|+|++||+||||||+|+++|.+|+++|.++++. +||++|+
T Consensus 96 ~~~~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~------tVV~aSs 169 (435)
T 1jbq_A 96 PKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGD------TIIEPTS 169 (435)
T ss_dssp CSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTC------EEEEECS
T ss_pred hhHHHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCC------EEEEeCC
Confidence 346778999999999999999876555 79999999999999999999999999999999999987 8999999
Q ss_pred cHHHhh--------cCcEEEEecCCCccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
||||++ |++++||||+..+..
T Consensus 170 GN~G~AlA~aaa~~Gi~~~IvmP~~~s~~ 198 (435)
T 1jbq_A 170 GNTGIGLALAAAVRGYRCIIVMPEKMSSE 198 (435)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEECSCCCHH
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 999985 999999999988754
No 14
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=99.89 E-value=2.3e-24 Score=171.15 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=81.4
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+...++++|.+.+++|||++++++++..+.+||+|+|++||+||||||+|+++|.+|.++|.+.+.. +||++|+
T Consensus 11 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~------~vv~~Ss 84 (346)
T 3l6b_A 11 DVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPK------AVVTHSS 84 (346)
T ss_dssp HHHHHHHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCS------CEEEECS
T ss_pred HHHHHHHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCC------EEEEeCC
Confidence 4556788899999999999999988777889999999999999999999999999999887655555 7999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |+++++|||++++...
T Consensus 85 GNhg~a~A~aa~~~G~~~~iv~p~~~~~~k 114 (346)
T 3l6b_A 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCK 114 (346)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEETTSCHHH
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 999985 9999999999987643
No 15
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=99.87 E-value=4.2e-23 Score=160.27 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=77.4
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....++++.+.+++|||++++++++..+.+||+|+|++||+||||||+|.+++.+++ ++. +||++|+
T Consensus 6 ~i~~a~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~------~~~------~vv~~ss 73 (311)
T 1ve5_A 6 DLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE------NPK------GLLAVSS 73 (311)
T ss_dssp HHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS------SCC------CEEEECS
T ss_pred HHHHHHHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc------CCC------eEEEECC
Confidence 4556788899999999999999887667789999999999999999999999999987 223 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||||++ |+++++|||+..+...
T Consensus 74 GN~g~alA~~a~~~G~~~~iv~p~~~~~~k 103 (311)
T 1ve5_A 74 GNHAQGVAYAAQVLGVKALVVMPEDASPYK 103 (311)
T ss_dssp SHHHHHHHHHHHHHTCCEEEECCCC--CCH
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 999985 9999999999877543
No 16
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=99.85 E-value=1.1e-21 Score=152.58 Aligned_cols=82 Identities=37% Similarity=0.431 Sum_probs=73.1
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
-+.+.+++|||+++++++ .+||+|+|++||+||||||+|.+++.+|.++|.++++ |+++|+||+|++
T Consensus 13 ~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~--------vv~aSsGN~g~a~ 80 (303)
T 1o58_A 13 MMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG--------IVEPTSGNMGIAI 80 (303)
T ss_dssp HHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC--------EEEECSSHHHHHH
T ss_pred hhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC--------EEEECchHHHHHH
Confidence 356778999999998875 6899999999999999999999999999998876543 899999999985
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 81 A~aa~~~G~~~~iv~p~~~~~~ 102 (303)
T 1o58_A 81 AMIGAKRGHRVILTMPETMSVE 102 (303)
T ss_dssp HHHHHHHTCCEEEEEETTSCHH
T ss_pred HHHHHHcCCcEEEEECCCCCHH
Confidence 999999999987754
No 17
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=99.85 E-value=6.6e-23 Score=162.16 Aligned_cols=93 Identities=22% Similarity=0.132 Sum_probs=79.4
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....++++.+.+++|||++++++++..+.+||+|+|++||+||||||+|+++|.+|.+++. +. +||++|+
T Consensus 26 ~i~~a~~~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdR~a~~~i~~a~~~~~---~~------~vv~~ss 96 (342)
T 2gn0_A 26 DILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEK---RK------GVVACSA 96 (342)
T ss_dssp HHHHHHHHHTTTSCCCCCCBCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHHSCHHHH---HT------CEEEECS
T ss_pred HHHHHHHHHhhhcCCCCceEchhhHHHhCCEEEEEEccCCCcCChHHHHHHHHHHHHHHhcC---CC------EEEEECC
Confidence 44567778999999999999998877667899999999999999999999999999864321 23 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCcccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||+|++ |+++++|||++.+...
T Consensus 97 GN~g~alA~aa~~~G~~~~iv~p~~~~~~k 126 (342)
T 2gn0_A 97 GNHAQGVSLSCAMLGIDGKVVMPKGAPKSK 126 (342)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred ChHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 999985 9999999999887543
No 18
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=99.85 E-value=7.8e-22 Score=156.02 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=75.8
Q ss_pred HhhhcccCCCceeEc--CCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHH
Q 033857 9 KDVTELIGHTPMVYL--NNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILL 86 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~--~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g 86 (110)
+++...+|+|||+++ +++++..+.+||+|+|++||+||||||+|.++|.+|.++|. . +||++|+||||
T Consensus 20 ~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~----~------~vv~~SsGN~g 89 (351)
T 3aey_A 20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA----Q------AVACASTGNTA 89 (351)
T ss_dssp CCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----S------EEEESCSSHHH
T ss_pred CceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC----C------EEEEeCCCHHH
Confidence 457888999999999 88877678899999999999999999999999999998774 3 79999999999
Q ss_pred hh--------cCcEEEEecCC-Cccc
Q 033857 87 LK--------ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 87 ~a--------g~~~~iv~p~~-~~~~ 103 (110)
++ |+++++|||+. .+..
T Consensus 90 ~alA~~a~~~G~~~~iv~p~~~~~~~ 115 (351)
T 3aey_A 90 ASAAAYAARAGILAIVVLPAGYVALG 115 (351)
T ss_dssp HHHHHHHHHHTSEEEEEEETTCSCHH
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 84 99999999998 6643
No 19
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=99.85 E-value=4.3e-23 Score=161.42 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=78.2
Q ss_pred chhhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCc
Q 033857 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 3 ~~~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~Ss 82 (110)
+....++++.+.+++|||++++++++..+.+||+|+|++||+||||||+|++++.+++++. +.. +||++|+
T Consensus 12 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~---~~~------~vv~~ss 82 (323)
T 1v71_A 12 DVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ---RKA------GVLTFSS 82 (323)
T ss_dssp HHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHH---HHH------CEEECCS
T ss_pred HHHHHHHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhc---CCC------eEEEeCC
Confidence 3456677899999999999999887666789999999999999999999999998776421 122 6999999
Q ss_pred cHHHhh--------cCcEEEEecCCCccc
Q 033857 83 PILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 83 GN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
||||++ |+++++|||+..+..
T Consensus 83 GN~g~alA~~a~~~G~~~~iv~p~~~~~~ 111 (323)
T 1v71_A 83 GNHAQAIALSAKILGIPAKIIMPLDAPEA 111 (323)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEETTCCHH
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCCcHH
Confidence 999985 999999999988754
No 20
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5.6e-22 Score=157.77 Aligned_cols=85 Identities=21% Similarity=0.205 Sum_probs=75.4
Q ss_pred HhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
+++...+|+|||++++++++..+.+||+|+|++||+||||||+|.+++.+|.++|. . +||++|+||||++
T Consensus 30 ~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~----~------~vv~aSsGN~g~a 99 (360)
T 2d1f_A 30 TPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ----R------AVLCASTGNTSAS 99 (360)
T ss_dssp CCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----S------EEEECCSSHHHHH
T ss_pred CccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC----C------EEEEeCCcHHHHH
Confidence 45677889999999998876667899999999999999999999999999998774 3 7999999999984
Q ss_pred --------cCcEEEEecCC-Cccc
Q 033857 89 --------ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 89 --------g~~~~iv~p~~-~~~~ 103 (110)
|+++++|||+. .+..
T Consensus 100 lA~~a~~~G~~~~i~~p~~~~~~~ 123 (360)
T 2d1f_A 100 AAAYAARAGITCAVLIPQGKIAMG 123 (360)
T ss_dssp HHHHHHHHTCEEEEEECSSCCCHH
T ss_pred HHHHHHHcCCcEEEEEcCCCCCHH
Confidence 99999999998 6643
No 21
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=99.84 E-value=5.8e-22 Score=156.82 Aligned_cols=85 Identities=24% Similarity=0.189 Sum_probs=75.1
Q ss_pred HhhhcccCCCceeEcCCccCCCCce--EEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHH
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAH--IAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILL 86 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~--i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g 86 (110)
.++...+|+|||++++++++..+.+ ||+|+|++||+||||||+|.++|.+|.++|. . +||++|+||||
T Consensus 22 ~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~----~------~vv~~SsGN~g 91 (352)
T 2zsj_A 22 PIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK----R------AVICASTGNTS 91 (352)
T ss_dssp CCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC----C------EEEECCSSHHH
T ss_pred CceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC----C------EEEEeCCchHH
Confidence 4577889999999999887666777 9999999999999999999999999998774 3 79999999999
Q ss_pred hh--------cCcEEEEecCC-Cccc
Q 033857 87 LK--------ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 87 ~a--------g~~~~iv~p~~-~~~~ 103 (110)
++ |+++++|||+. .+..
T Consensus 92 ~alA~~a~~~G~~~~i~~p~~~~~~~ 117 (352)
T 2zsj_A 92 ASAAAYAARAGLRAYVLLPKGAVAIG 117 (352)
T ss_dssp HHHHHHHHHHTCEEEEEEEGGGCCHH
T ss_pred HHHHHHHHhcCCcEEEEECCCCCCHH
Confidence 84 99999999997 6643
No 22
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=99.84 E-value=1.2e-21 Score=156.68 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=74.2
Q ss_pred HhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh
Q 033857 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK 88 (110)
Q Consensus 9 ~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a 88 (110)
.+....+++|||++++++++..+.+||+|+|++||+||||||+|.+++.+|.++|. . +||++|+||||++
T Consensus 38 ~~~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~----~------~vv~aSsGN~g~a 107 (364)
T 4h27_A 38 MSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC----A------HFVCSSSGNAGMA 107 (364)
T ss_dssp ---CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC----C------EEEECCSSHHHHH
T ss_pred hhcCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC----C------EEEEeCCChHHHH
Confidence 34566789999999999887778899999999999999999999999999998764 3 7999999999985
Q ss_pred --------cCcEEEEecCCCccc
Q 033857 89 --------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 --------g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 108 lA~aa~~~G~~~~iv~p~~~~~~ 130 (364)
T 4h27_A 108 AAYAARQLGVPATIVVPGTTPAL 130 (364)
T ss_dssp HHHHHHHHTCCEEEEEETTSCHH
T ss_pred HHHHHHHhCCceEEEECCCCCHH
Confidence 999999999998764
No 23
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=151.40 Aligned_cols=81 Identities=19% Similarity=0.089 Sum_probs=72.2
Q ss_pred cccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh----
Q 033857 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK---- 88 (110)
Q Consensus 13 ~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a---- 88 (110)
..+++|||++++++++..+.+||+|+|++||+||||||+|.++|.+|.++| +. +||++||||||++
T Consensus 3 ~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g----~~------~vv~~ssGN~g~alA~~ 72 (318)
T 2rkb_A 3 PFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKG----CR------HLVCSSGGNAGIAAAYA 72 (318)
T ss_dssp CSSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTT----CC------EEEECCCSHHHHHHHHH
T ss_pred CCCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcC----CC------EEEEECCchHHHHHHHH
Confidence 357899999999887666789999999999999999999999999999876 23 7999999999985
Q ss_pred ----cCcEEEEecCCCccc
Q 033857 89 ----ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 ----g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 73 a~~~G~~~~i~~p~~~~~~ 91 (318)
T 2rkb_A 73 ARKLGIPATIVLPESTSLQ 91 (318)
T ss_dssp HHHHTCCEEEEECTTCCHH
T ss_pred HHHcCCCEEEEECCCCcHH
Confidence 999999999988754
No 24
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=99.83 E-value=1.4e-21 Score=156.85 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=74.7
Q ss_pred HHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHh
Q 033857 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLL 87 (110)
Q Consensus 8 ~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~ 87 (110)
...+...+++|||++++++++..+.+||+|+|++||+||||||+|.++|.+|.++| +. +||++|+||+|+
T Consensus 37 ~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g----~~------~vv~aSsGN~g~ 106 (372)
T 1p5j_A 37 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQG----CA------HFVCSSAGNAGM 106 (372)
T ss_dssp ---CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTT----CC------EEEECCSSHHHH
T ss_pred cccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcC----CC------EEEEeCCCHHHH
Confidence 34456778999999999887666789999999999999999999999999998875 23 799999999998
Q ss_pred h--------cCcEEEEecCCCcccc
Q 033857 88 K--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 88 a--------g~~~~iv~p~~~~~~~ 104 (110)
+ |+++++|||+..+...
T Consensus 107 alA~aa~~~G~~~~iv~p~~~~~~k 131 (372)
T 1p5j_A 107 AAAYAARQLGVPATIVVPGTTPALT 131 (372)
T ss_dssp HHHHHHHHHTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHH
Confidence 5 9999999999887643
No 25
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=99.83 E-value=5.1e-21 Score=156.85 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=74.8
Q ss_pred cCCCceeEcCCcc----CCC----CceEEEEeCCCCC-CCCccchHHHHHHHH-----HHHcCCCCCCCcc---------
Q 033857 15 IGHTPMVYLNNVV----DGC----VAHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGKCF--------- 71 (110)
Q Consensus 15 ig~TPLv~~~~l~----~~~----~~~i~~KlE~~nP-tGS~KdR~A~~~i~~-----a~~~G~~~~g~~~--------- 71 (110)
+++|||+++++++ +.. +++||+|+|++|| +||||||+|+++|.. |+++|.+++|..+
T Consensus 76 ~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r 155 (442)
T 3ss7_X 76 IIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFK 155 (442)
T ss_dssp CCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHH
T ss_pred CCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhh
Confidence 4699999998875 332 4899999999999 999999999999986 7899998887410
Q ss_pred --ccccEEEEeCccHHHhh--------cCcEEEEecCCCccccc
Q 033857 72 --CFQSTLITSTKPILLLK--------ILRVSCVFQDFCSNWVY 105 (110)
Q Consensus 72 --~~~~~vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~~ 105 (110)
--+.+|+++|+||||++ |++++||||+.++.+.+
T Consensus 156 ~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~ 199 (442)
T 3ss7_X 156 QFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKK 199 (442)
T ss_dssp HHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred hhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHH
Confidence 00127999999999985 99999999999887643
No 26
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=99.82 E-value=1.4e-21 Score=156.03 Aligned_cols=85 Identities=20% Similarity=0.123 Sum_probs=73.8
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+|.+.+++|||++++++++..+.+||+|+|++||+||||||+|++++..+++++. .. +|+++||||||++
T Consensus 53 ~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~---~~------~vv~assGN~g~a~ 123 (366)
T 3iau_A 53 PVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREEL---DK------GVITASAGNHAQGV 123 (366)
T ss_dssp CGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHH---HH------CEEEECSSHHHHHH
T ss_pred HHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCC---CC------EEEEeCCCHHHHHH
Confidence 4678899999999999887778899999999999999999999999998765432 12 6999999999985
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|+++++|||+..+..
T Consensus 124 A~aa~~~G~~~~iv~P~~~~~~ 145 (366)
T 3iau_A 124 ALAGQRLNCVAKIVMPTTTPQI 145 (366)
T ss_dssp HHHHHHTTCCEEEEECTTCCHH
T ss_pred HHHHHHhCCceEEEeCCCCCHH
Confidence 999999999987764
No 27
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=99.81 E-value=2e-20 Score=149.05 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=70.1
Q ss_pred HHhhhcccCC-CceeEcCCccCCCC-ceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHH
Q 033857 8 KKDVTELIGH-TPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPIL 85 (110)
Q Consensus 8 ~~~i~~~ig~-TPLv~~~~l~~~~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~ 85 (110)
.+.+.+.+|+ |||++++++++..+ ++||+|+|++||+||||||+|++++..|+++|. +. .|+++|||||
T Consensus 40 ~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~---~~------vv~~~ssGN~ 110 (388)
T 1v8z_A 40 NYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGK---TR------LIAETGAGQH 110 (388)
T ss_dssp HHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC---CE------EEEEESSSHH
T ss_pred HHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHcCC---CE------EEEecCchHH
Confidence 3445568886 99999998876664 899999999999999999999999999888773 22 4557999999
Q ss_pred Hhh--------cCcEEEEecCC
Q 033857 86 LLK--------ILRVSCVFQDF 99 (110)
Q Consensus 86 g~a--------g~~~~iv~p~~ 99 (110)
|++ |++++||||+.
T Consensus 111 g~a~A~aa~~~G~~~~iv~p~~ 132 (388)
T 1v8z_A 111 GVATAMAGALLGMKVDIYMGAE 132 (388)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHH
T ss_pred HHHHHHHHHHcCCcEEEEEcCC
Confidence 985 99999999985
No 28
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=99.81 E-value=5.4e-21 Score=160.69 Aligned_cols=85 Identities=21% Similarity=0.157 Sum_probs=74.9
Q ss_pred hhhcccCCCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 10 ~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
++.+.+++|||++++++++..+++||+|+|++||+||||||+|++++..+.+++. . . +||++|+||||++
T Consensus 24 ~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~-~--~------gVV~aSsGNhg~av 94 (514)
T 1tdj_A 24 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK-A--H------GVITASAGNHAQGV 94 (514)
T ss_dssp CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC-S--S------SCEEEECSSSHHHH
T ss_pred hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC-C--C------EEEEECCcHHHHHH
Confidence 5778899999999998887778999999999999999999999999999876532 2 2 5999999999985
Q ss_pred -------cCcEEEEecCCCccc
Q 033857 89 -------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~~~~~ 103 (110)
|++++||||+++|..
T Consensus 95 A~aa~~lGi~~~IvmP~~~p~~ 116 (514)
T 1tdj_A 95 AFSSARLGVKALIVMPTATADI 116 (514)
T ss_dssp HHHHHHTTCCEEEECCSSCCHH
T ss_pred HHHHHHcCCcEEEEECCCCCHH
Confidence 999999999998764
No 29
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=99.80 E-value=2.1e-20 Score=147.75 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=77.1
Q ss_pred hhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCC--CCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeC--
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITST-- 81 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nP--tGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~S-- 81 (110)
..+++|...+++|||++++++++..+.+||+|+|++|| +||||||++.+++.+|+++|. + +||++|
T Consensus 21 ~a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~----~------~vv~~s~t 90 (342)
T 4d9b_A 21 TRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA----D------TLITAGAI 90 (342)
T ss_dssp GGSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC----C------EEEEEEET
T ss_pred ccCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC----C------EEEEcCCc
Confidence 44567888899999999998877667899999999999 999999999999999999875 3 799986
Q ss_pred ccHHHhh--------cCcEEEEecCCCcc
Q 033857 82 KPILLLK--------ILRVSCVFQDFCSN 102 (110)
Q Consensus 82 sGN~g~a--------g~~~~iv~p~~~~~ 102 (110)
+||+|++ |+++++|||+.++.
T Consensus 91 sGN~g~alA~aa~~~G~~~~iv~p~~~~~ 119 (342)
T 4d9b_A 91 QSNHVRQTAAVAAKLGLHCVALLENPIGT 119 (342)
T ss_dssp TCHHHHHHHHHHHHHTCEEEEEEECTTCC
T ss_pred ccHHHHHHHHHHHHhCCcEEEEEeCCCCC
Confidence 7999985 99999999998874
No 30
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=99.80 E-value=2.1e-20 Score=146.25 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=76.9
Q ss_pred hhHHhhhcccCCCceeEcCCccCCC-C-ceEEEEeCCCC-C--CCCccchHHHHHHHHHHHcCCCCCCCccccccEEEE-
Q 033857 6 EIKKDVTELIGHTPMVYLNNVVDGC-V-AHIAAKLEMMQ-P--CSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLIT- 79 (110)
Q Consensus 6 ~~~~~i~~~ig~TPLv~~~~l~~~~-~-~~i~~KlE~~n-P--tGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~- 79 (110)
..++++...+++|||++++++++.. + .+||+|+|++| | +||||||++.++|.+|.++|. . +||+
T Consensus 4 ~~~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~----~------~vv~~ 73 (338)
T 1tzj_A 4 QRFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC----D------TLVSI 73 (338)
T ss_dssp GGSCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC----C------EEEEE
T ss_pred ccCCccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----C------EEEEc
Confidence 3456788899999999999887666 6 89999999997 8 999999999999999998774 2 6888
Q ss_pred -eCccHHHhh--------cCcEEEEecCCCccc
Q 033857 80 -STKPILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 80 -~SsGN~g~a--------g~~~~iv~p~~~~~~ 103 (110)
+|+||||++ |+++++|||+..+..
T Consensus 74 GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~ 106 (338)
T 1tzj_A 74 GGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYS 106 (338)
T ss_dssp EETTCHHHHHHHHHHHHHTCEEEEEEECCSSCC
T ss_pred CCchhHHHHHHHHHHHHhCCceEEEecCCCCcc
Confidence 899999985 999999999998753
No 31
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=99.80 E-value=1.4e-20 Score=148.14 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=76.3
Q ss_pred hHHhhhcccCCCceeEcCCccCCC-C-ceEEEEeCCCC-C--CCCccchHHHHHHHHHHHcCCCCCCCccccccEEEE--
Q 033857 7 IKKDVTELIGHTPMVYLNNVVDGC-V-AHIAAKLEMMQ-P--CSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLIT-- 79 (110)
Q Consensus 7 ~~~~i~~~ig~TPLv~~~~l~~~~-~-~~i~~KlE~~n-P--tGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~-- 79 (110)
.++++...+++|||++++++++.. + .+||+|+|++| | +||||||+|.++|.+|+++|. + +||+
T Consensus 5 ~~~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~----~------~vv~~G 74 (341)
T 1f2d_A 5 KFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY----T------HLVSIG 74 (341)
T ss_dssp SSCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC----S------EEEEEE
T ss_pred cCCCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC----C------EEEEcC
Confidence 345678889999999999887666 6 89999999999 9 999999999999999998874 3 7999
Q ss_pred eCccHHHhh--------cCcEEEEecCCCc
Q 033857 80 STKPILLLK--------ILRVSCVFQDFCS 101 (110)
Q Consensus 80 ~SsGN~g~a--------g~~~~iv~p~~~~ 101 (110)
+|+||||++ |+++++|||+..+
T Consensus 75 ~ssGN~g~alA~~a~~~G~~~~iv~p~~~~ 104 (341)
T 1f2d_A 75 GRQSNQTRMVAALAAKLGKKCVLIQEDWVP 104 (341)
T ss_dssp ETTCHHHHHHHHHHHHHTCEEEEEEECCSC
T ss_pred CcchHHHHHHHHHHHHhCCceEEEeccCCC
Confidence 999999985 9999999999887
No 32
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=99.80 E-value=5.8e-20 Score=147.99 Aligned_cols=87 Identities=14% Similarity=-0.075 Sum_probs=71.4
Q ss_pred cccCCCceeEcCCccCCCC-ceEEEEeCCCC-CCCCccchHHHHHHHHHH--HcCC----C--------CCCCccccccE
Q 033857 13 ELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQ-PCSSVKDRIAYSMIKDAE--DKGL----I--------TPGKCFCFQST 76 (110)
Q Consensus 13 ~~ig~TPLv~~~~l~~~~~-~~i~~KlE~~n-PtGS~KdR~A~~~i~~a~--~~G~----~--------~~g~~~~~~~~ 76 (110)
..+++|||++++++++..+ .+||+|+|++| |+||||||+|.++|.++. +.|. + .+.+ .+
T Consensus 40 ~~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~-----~~ 114 (398)
T 4d9i_A 40 AGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEK-----MT 114 (398)
T ss_dssp TTCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCC-----CE
T ss_pred CCCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCC-----CE
Confidence 3478999999999887667 69999999999 999999999999999984 3341 0 1111 06
Q ss_pred EEEeCccHHHhh--------cCcEEEEecCCCcccc
Q 033857 77 LITSTKPILLLK--------ILRVSCVFQDFCSNWV 104 (110)
Q Consensus 77 vi~~SsGN~g~a--------g~~~~iv~p~~~~~~~ 104 (110)
||++|+||||++ |++++||||+.++...
T Consensus 115 vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k 150 (398)
T 4d9i_A 115 FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQER 150 (398)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHH
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHH
Confidence 999999999985 9999999999987654
No 33
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=99.79 E-value=1.4e-19 Score=145.38 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=69.1
Q ss_pred hhcccCC-CceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 11 VTELIGH-TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 11 i~~~ig~-TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+.+.+|+ |||++++++++..+++||+|+|++||+||||||+|++++..|.+.|. +. .|+++||||||++
T Consensus 48 ~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~g~---~~------vi~e~ssGNhg~a~ 118 (396)
T 1qop_B 48 LKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK---SE------IIAETGAGQHGVAS 118 (396)
T ss_dssp HHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC---CE------EEEEESSSHHHHHH
T ss_pred HHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHcCc---CE------EEEecCchHHHHHH
Confidence 4567876 99999999987778999999999999999999999999999988774 22 3445899999985
Q ss_pred -------cCcEEEEecCC
Q 033857 89 -------ILRVSCVFQDF 99 (110)
Q Consensus 89 -------g~~~~iv~p~~ 99 (110)
|++++||||+.
T Consensus 119 A~aa~~~G~~~~i~mp~~ 136 (396)
T 1qop_B 119 ALASALLGLKCRIYMGAK 136 (396)
T ss_dssp HHHHHHHTCEEEEEEEHH
T ss_pred HHHHHHCCCcEEEEEcCC
Confidence 99999999985
No 34
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=99.79 E-value=1.1e-19 Score=147.37 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=73.1
Q ss_pred HHhhhccc---CCCceeEcCCccCCCCceEEEEeCCCCC-CCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCcc
Q 033857 8 KKDVTELI---GHTPMVYLNNVVDGCVAHIAAKLEMMQP-CSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKP 83 (110)
Q Consensus 8 ~~~i~~~i---g~TPLv~~~~l~~~~~~~i~~KlE~~nP-tGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsG 83 (110)
++++.+.+ .+|||++++++++. +++||+|+|.+|| +||||||+|.+++..++ |.+++|. +|+++|+|
T Consensus 84 ~~~~~~~~g~~~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~--~a~~~g~------~Iv~assG 154 (389)
T 1wkv_A 84 FPSPLDFFERGKPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS--RRVEKGS------LVADATSS 154 (389)
T ss_dssp ESSHHHHHHHSCSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--TTSCTTC------EEEEECCH
T ss_pred HHHHHHHhCCCCCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--HHHhcCC------EEEEECCc
Confidence 34444544 46999999999865 7899999999999 99999999999999966 4455666 89999999
Q ss_pred HHHhh--------cCcEEEEecCCCccc
Q 033857 84 ILLLK--------ILRVSCVFQDFCSNW 103 (110)
Q Consensus 84 N~g~a--------g~~~~iv~p~~~~~~ 103 (110)
|||++ |++++||||+..+..
T Consensus 155 NhG~AlA~aaa~~Gl~~~ivmp~~~~~~ 182 (389)
T 1wkv_A 155 NFGVALSAVARLYGYRARVYLPGAAEEF 182 (389)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTSCHH
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 99985 999999999987653
No 35
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=99.77 E-value=1.3e-19 Score=141.74 Aligned_cols=89 Identities=20% Similarity=0.087 Sum_probs=78.1
Q ss_pred hhhHHhhhcccCCCceeEcCCccCCCCceEEEEeCCCCC--CCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEe--
Q 033857 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITS-- 80 (110)
Q Consensus 5 ~~~~~~i~~~ig~TPLv~~~~l~~~~~~~i~~KlE~~nP--tGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~-- 80 (110)
...++++...+++|||++++++++..+++||+|+|++|| +||+|||.+.+++.+|+++|. + +||++
T Consensus 9 l~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~----~------~vv~~G~ 78 (325)
T 1j0a_A 9 LAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA----D------VVITVGA 78 (325)
T ss_dssp HTTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC----S------EEEEECC
T ss_pred hccCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC----C------EEEEcCC
Confidence 345667888999999999998876667899999999999 999999999999999999884 3 79996
Q ss_pred CccHHHhh--------cCcEEEEecCCC-ccc
Q 033857 81 TKPILLLK--------ILRVSCVFQDFC-SNW 103 (110)
Q Consensus 81 SsGN~g~a--------g~~~~iv~p~~~-~~~ 103 (110)
|+||||++ |+++++|||+.. +..
T Consensus 79 ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~ 110 (325)
T 1j0a_A 79 VHSNHAFVTGLAAKKLGLDAILVLRGKEELKG 110 (325)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEEEESCCCSCH
T ss_pred cchHHHHHHHHHHHHhCCcEEEEECCCCCCCc
Confidence 99999985 999999999988 643
No 36
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=99.75 E-value=1.6e-18 Score=141.37 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=68.7
Q ss_pred hcccCC-CceeEcCCccCCC-CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 12 TELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 12 ~~~ig~-TPLv~~~~l~~~~-~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
.+.+|+ |||++++++++.. +++||+|+|++||+||||||+|.+++..|.+.|. +. .|+++|+||||++
T Consensus 75 ~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~---~~------vI~~~ssGNhG~A~ 145 (422)
T 2o2e_A 75 ANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGK---TR------VIAETGAGQHGVAT 145 (422)
T ss_dssp TTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTC---CE------EEEEESSSHHHHHH
T ss_pred HHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCC---Ce------EEEecCccHHHHHH
Confidence 456766 9999999998776 5899999999999999999999999999888763 22 4668999999985
Q ss_pred -------cCcEEEEecCCC
Q 033857 89 -------ILRVSCVFQDFC 100 (110)
Q Consensus 89 -------g~~~~iv~p~~~ 100 (110)
|++++||||+..
T Consensus 146 A~aaa~~G~~~~I~mp~~~ 164 (422)
T 2o2e_A 146 ATACALLGLDCVIYMGGID 164 (422)
T ss_dssp HHHHHHHTCEEEEEEEHHH
T ss_pred HHHHHHcCCcEEEEeCCCc
Confidence 999999999863
No 37
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=7.3e-19 Score=142.73 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=67.2
Q ss_pred cccCC-CceeEcCCccCCC-CceEEEEeCCCCCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh--
Q 033857 13 ELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK-- 88 (110)
Q Consensus 13 ~~ig~-TPLv~~~~l~~~~-~~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a-- 88 (110)
+.+++ |||++++++++.. +++||+|+|++||+||||||+|++++..|.+.|. +. .|+++||||||++
T Consensus 72 ~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~---~~------vI~~~ssGNhg~avA 142 (418)
T 1x1q_A 72 QFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGK---RR------VIAETGAGQHGVSVA 142 (418)
T ss_dssp HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTC---CE------EEEECSSSHHHHHHH
T ss_pred cccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCC---CE------EEEecCchHHHHHHH
Confidence 56765 9999999887665 5899999999999999999999999998887763 22 4667999999985
Q ss_pred ------cCcEEEEecCC
Q 033857 89 ------ILRVSCVFQDF 99 (110)
Q Consensus 89 ------g~~~~iv~p~~ 99 (110)
|++++||||+.
T Consensus 143 ~aaa~~Gi~~~I~mp~~ 159 (418)
T 1x1q_A 143 TVAALFGLECVVYMGEE 159 (418)
T ss_dssp HHHHHHTCEEEEEEEHH
T ss_pred HHHHHcCCCEEEEECCC
Confidence 99999999985
No 38
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=99.74 E-value=1.8e-18 Score=143.48 Aligned_cols=81 Identities=9% Similarity=-0.064 Sum_probs=67.3
Q ss_pred cCCCceeEcCCccCC-CC-ceEEEEeCCCCCCCCccchHHHHHHHHHHH---cCCCCCCCccccccEEEEeCccHHHhh-
Q 033857 15 IGHTPMVYLNNVVDG-CV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAED---KGLITPGKCFCFQSTLITSTKPILLLK- 88 (110)
Q Consensus 15 ig~TPLv~~~~l~~~-~~-~~i~~KlE~~nPtGS~KdR~A~~~i~~a~~---~G~~~~g~~~~~~~~vi~~SsGN~g~a- 88 (110)
+|+|||++++++++. .+ .+||+|+|++|||||||||++.+++..+.+ +| ++.. +|+++||||||.+
T Consensus 128 ~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~--~g~~------~Vv~aSsGNtG~Al 199 (486)
T 1e5x_A 128 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMK--RPVV------GVGCASTGDTSAAL 199 (486)
T ss_dssp CCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTT--CCCC------EEEECCCSHHHHHH
T ss_pred CCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcC--CCCe------EEEEcCCCHHHHHH
Confidence 788999999988765 55 589999999999999999999888877654 43 2234 7999999999985
Q ss_pred -------cCcEEEEecCC-Cccc
Q 033857 89 -------ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 89 -------g~~~~iv~p~~-~~~~ 103 (110)
|++++||||++ .+..
T Consensus 200 A~~a~~~Gi~~~I~~P~~~~s~~ 222 (486)
T 1e5x_A 200 SAYCASAGIPSIVFLPANKISMA 222 (486)
T ss_dssp HHHHHHHTCCEEEEEEGGGCCHH
T ss_pred HHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999996 6653
No 39
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=99.69 E-value=2.5e-17 Score=138.19 Aligned_cols=78 Identities=13% Similarity=-0.043 Sum_probs=63.9
Q ss_pred ccCCCceeE--cCCccCCCCceEEEEeCCCCCCCCccchHHHHH---HHHHH-HcCC-----CCCCCccccccEEEEeCc
Q 033857 14 LIGHTPMVY--LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSM---IKDAE-DKGL-----ITPGKCFCFQSTLITSTK 82 (110)
Q Consensus 14 ~ig~TPLv~--~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~---i~~a~-~~G~-----~~~g~~~~~~~~vi~~Ss 82 (110)
..|.|||++ ++++ .++|+|+|++|||||||||++..+ +..++ ++|. ++++. +|+++||
T Consensus 93 ~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~------~Iv~ATS 161 (514)
T 1kl7_A 93 SDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQI------TVVGATS 161 (514)
T ss_dssp STTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCE------EEEEECS
T ss_pred CCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCC------EEEECCC
Confidence 467899999 7655 579999999999999999999999 44443 3452 55665 8999999
Q ss_pred cHHHhh---------cCcEEEEecCC-Ccc
Q 033857 83 PILLLK---------ILRVSCVFQDF-CSN 102 (110)
Q Consensus 83 GN~g~a---------g~~~~iv~p~~-~~~ 102 (110)
||+|.| |++++|+||++ .+.
T Consensus 162 GNtG~AA~~a~a~~~Gi~~~I~~P~~~~S~ 191 (514)
T 1kl7_A 162 GDTGSAAIYGLRGKKDVSVFILYPTGRISP 191 (514)
T ss_dssp SSHHHHHHHHHTTCTTEEEEEEEETTSSCH
T ss_pred CcHHHHHHHHHHhhcCCeEEEEEcCCCCCH
Confidence 999874 88999999997 665
No 40
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=99.57 E-value=3.6e-15 Score=123.96 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=58.4
Q ss_pred CCceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHH---HHHHH-HcCCCCCCCccccccEEEEeCccHHHhh----
Q 033857 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSM---IKDAE-DKGLITPGKCFCFQSTLITSTKPILLLK---- 88 (110)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~---i~~a~-~~G~~~~g~~~~~~~~vi~~SsGN~g~a---- 88 (110)
-|||+++. .++|+|.|++|||||||||+|+++ +..+. ++|. +. +|+++||||||++
T Consensus 93 ~~pl~~l~-------~~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~---~~------~Vv~ASSGNtG~aa~aa 156 (468)
T 4f4f_A 93 VCPLVQTD-------ANEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE---RA------TIVGATSGDTGGAAIEA 156 (468)
T ss_dssp SSCEEEEE-------TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC---CE------EEEEECSSHHHHHHHHH
T ss_pred CCceEEec-------CCeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC---Cc------EEEEECCchHHHHHHHH
Confidence 38998863 269999999999999999999999 77764 5553 22 6999999999942
Q ss_pred -----cCcEEEEecCC-Cccc
Q 033857 89 -----ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 89 -----g~~~~iv~p~~-~~~~ 103 (110)
|++++||||++ +|..
T Consensus 157 ~a~~~Gi~~~I~~P~~~~s~~ 177 (468)
T 4f4f_A 157 FGGRDNTDIFILFPNGRVSPV 177 (468)
T ss_dssp HTTCSSEEEEEEEETTCSCHH
T ss_pred HHhccCCcEEEEeCCCCCCHH
Confidence 88999999998 6654
No 41
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=99.52 E-value=1.5e-14 Score=117.98 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=56.3
Q ss_pred CCCceeEcCCccCCCCceEEEEeCCC-CCCCCccchHHHHHH---HHHHHcCCCCCCCccccccEEEEeCccHHHhh---
Q 033857 16 GHTPMVYLNNVVDGCVAHIAAKLEMM-QPCSSVKDRIAYSMI---KDAEDKGLITPGKCFCFQSTLITSTKPILLLK--- 88 (110)
Q Consensus 16 g~TPLv~~~~l~~~~~~~i~~KlE~~-nPtGS~KdR~A~~~i---~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a--- 88 (110)
++|||+++++ +||+ +|.+ |||||||||+|.+++ ..| +++ ++. +|+++||||||++
T Consensus 82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~---~~~------~Iv~atsGNtG~A~A~ 143 (428)
T 1vb3_A 82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGD---KPV------TILTATSGDTGAAVAH 143 (428)
T ss_dssp SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTT---CCE------EEEEECSSSHHHHHHH
T ss_pred CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-Hhc---CCC------EEEecCCchHHHHHHH
Confidence 6899999863 6999 7888 699999999999885 444 232 334 7999999999985
Q ss_pred ------cCcEEEEecCC-Cccc
Q 033857 89 ------ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 89 ------g~~~~iv~p~~-~~~~ 103 (110)
|++++||||++ .+..
T Consensus 144 ~~a~~~G~~~~I~~P~~~~s~~ 165 (428)
T 1vb3_A 144 AFYGLPNVKVVILYPRGKISPL 165 (428)
T ss_dssp HTTTCTTEEEEEEEETTCSCHH
T ss_pred HHhhhcCCeEEEEECCCCCCHH
Confidence 78999999995 6653
No 42
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=99.49 E-value=3.9e-14 Score=118.55 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=58.4
Q ss_pred CceeEcCCccCCCCceEEEEeCCCCCCCCccchHHHHH---HHHHH-HcCCCCCCCccccccEEEEeCccHHHhh-----
Q 033857 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSM---IKDAE-DKGLITPGKCFCFQSTLITSTKPILLLK----- 88 (110)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nPtGS~KdR~A~~~---i~~a~-~~G~~~~g~~~~~~~~vi~~SsGN~g~a----- 88 (110)
|||+++.. ..+.++|+|.|+.|||||||||++..+ +..+. ++|. +. +|+++||||+|++
T Consensus 103 ~Pl~~l~~---~~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~---~~------~Vv~ASSGNtG~Aaa~a~ 170 (487)
T 3v7n_A 103 TPLTTLGT---ENGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE---TL------NILGATSGDTGSAAEYAM 170 (487)
T ss_dssp SCEEEEEE---ETTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC---CE------EEEEECSSHHHHHHHHHH
T ss_pred ceeEEecC---CCCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC---Cc------EEEEeCChHHHHHHHHHH
Confidence 79988742 002249999999999999999999998 88885 3443 22 6999999999963
Q ss_pred ----cCcEEEEecCC-Cccc
Q 033857 89 ----ILRVSCVFQDF-CSNW 103 (110)
Q Consensus 89 ----g~~~~iv~p~~-~~~~ 103 (110)
|++++|+||++ +|..
T Consensus 171 ~~~~Gi~~~I~~P~~~~s~~ 190 (487)
T 3v7n_A 171 RGKEGVRVFMLSPHKKMSAF 190 (487)
T ss_dssp TTCTTEEEEEEEETTCSCHH
T ss_pred HhccCCeEEEEECCCCCCHH
Confidence 88999999998 6653
No 43
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=23.93 E-value=1.3e+02 Score=22.44 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCCCCccchHHHHHHHHHHHcCCCCCCCccccccEEEEeCccHHHhh------cCcEEEEe
Q 033857 42 QPCSSVKDRIAYSMIKDAEDKGLITPGKCFCFQSTLITSTKPILLLK------ILRVSCVF 96 (110)
Q Consensus 42 nPtGS~KdR~A~~~i~~a~~~G~~~~g~~~~~~~~vi~~SsGN~g~a------g~~~~iv~ 96 (110)
+|+---=+......++.|.+.|. + . -|+.+|+|-+|.. +++.++|-
T Consensus 22 ~~G~eNT~~tl~la~era~e~~I-k--~------iVVAS~sG~TA~k~~e~~~~i~lVvVT 73 (201)
T 1vp8_A 22 KPGRENTEETLRLAVERAKELGI-K--H------LVVASSYGDTAMKALEMAEGLEVVVVT 73 (201)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC-C--E------EEEECSSSHHHHHHHHHCTTCEEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHHcCC-C--E------EEEEeCCChHHHHHHHHhcCCeEEEEe
Confidence 33334456677777888888774 2 2 5789999999974 44666654
Done!