RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033857
(110 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 94.6 bits (234), Expect = 3e-25
Identities = 49/70 (70%), Positives = 57/70 (81%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGKCFCFQST 76
PG+ + T
Sbjct: 63 PGESVLIEPT 72
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 86.5 bits (213), Expect = 2e-22
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + ++ K+E P SVK RI +M+ AE G +T
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 67 PGKCFC 72
GK
Sbjct: 60 KGKEIV 65
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 81.5 bits (200), Expect = 2e-20
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D + IGHTP+V LN + + I AK+E P SVK RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67 PGKCFCFQSTLIT 79
PG + T
Sbjct: 60 PGVELVEPTNGNT 72
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 78.8 bits (193), Expect = 1e-19
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 78.5 bits (192), Expect = 2e-19
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKC 70
+ + IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 71 FC 72
Sbjct: 63 LI 64
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 76.5 bits (187), Expect = 2e-18
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 7 IKKDVTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 65 ITPGKCFC 72
+ PG
Sbjct: 94 LKPGDTII 101
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 69.4 bits (169), Expect = 5e-16
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
+ LIG TP+V L+++ + I KLE P SVKDR A MI DAE +GL+ G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 62.6 bits (151), Expect = 1e-13
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E QP S K R AY+M+ ++
Sbjct: 17 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAH 76
Query: 67 PGKCFCFQSTLITSTKPILLLKILRVSCVFQDFCSNWVYTAQ 108
+ L + + V ++ A
Sbjct: 77 GVITASAGNHAQGVAFSSARLGVKAL-IVMPTATADIKVDAV 117
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 58.0 bits (139), Expect = 6e-12
Identities = 17/104 (16%), Positives = 32/104 (30%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
+D + + + TP++ + V VA + K E Q + K R A + + +
Sbjct: 6 DDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE 65
Query: 62 KGLITPGKCFCFQSTLITSTKPILLLKILRVSCVFQDFCSNWVY 105
F + +L I + D V
Sbjct: 66 AQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVA 109
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 57.7 bits (138), Expect = 8e-12
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAE 60
++D + + TP++ + + K E +Q S K R A S E
Sbjct: 3 LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE 62
Query: 61 DK 62
+
Sbjct: 63 NP 64
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 56.0 bits (134), Expect = 4e-11
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 10 DVTELIGHTPMVYLNNVV-DGCVAHIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITP 67
D E TP+V + +G + KLE P S SVKDR A +I + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 68 GKCFCFQSTLITST 81
G S + +T
Sbjct: 144 G------SLVADAT 151
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 54.3 bits (129), Expect = 1e-10
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQ--PCSSVKDRIAYSMIKDAEDKGLITPG 68
V + TP+ YL N+ A + K + + K R ++ DA KG
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 69 KCFCFQSTLITST 81
S T
Sbjct: 75 TVGAVHSNHAFVT 87
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 53.2 bits (126), Expect = 3e-10
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
E ++ L G TP++ L + AK E + P S KDR + A +
Sbjct: 16 SEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEG 75
Query: 63 GLITP 67
G
Sbjct: 76 GAQAV 80
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 51.6 bits (122), Expect = 2e-09
Identities = 6/61 (9%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
V+ G++ + + + + K + S KD ++ +
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 69 K 69
Sbjct: 175 V 175
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 49.3 bits (116), Expect = 7e-09
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 5/96 (5%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSV---KDRIAYSMIKDAEDKGLI 65
G +P+ LN + G ++ AK E + K R ++ D +
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYT 68
Query: 66 TPGKCFCFQSTLITSTKPILLLKILRVSCVFQDFCS 101
QS + + + +D+
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVP 104
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 48.9 bits (115), Expect = 1e-08
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSV---KDRIAYSMIKDAEDKGLI 65
G TP+ L + G H+ AK E + K R +I +A +G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 66 TPGKCFCFQSTLITST 81
T QS
Sbjct: 69 TLVSIGGIQSNQTRQV 84
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 48.6 bits (114), Expect = 1e-08
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 14 LIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
L TP+ + + K++ QP S K R K +G
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH 56
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 42.1 bits (98), Expect = 2e-06
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 6 EIKKDVTELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+ + G T + N+ G + K E + + K A+ G
Sbjct: 43 QFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK 102
Query: 65 ITPGKCFCFQSTLITST 81
+ S
Sbjct: 103 SEIIAETGAGQHGVASA 119
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 39.1 bits (90), Expect = 4e-05
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 6 EIKKDVTELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
++ + G TP+ Y + + A I K E + + K A A+ G
Sbjct: 38 QLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMG 97
Query: 64 LITPGKCFCFQSTLITSTKPILLLKILRVSCVFQDFC 100
+ + LL + + +
Sbjct: 98 KTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDV 134
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase
CDH {Escherichia coli [TaxId: 562]}
Length = 220
Score = 25.6 bits (56), Expect = 1.5
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 24 NNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDA 59
V++ C+ + + PC+ VK Y ++KD
Sbjct: 6 KIVLEECLPNQQQN-QNPSPCAEVKPNAGYVVLKDL 40
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 23.5 bits (51), Expect = 5.4
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 69 KCFCFQSTLITSTKP-ILLLKILRV 92
+ C +T KP L K+ +V
Sbjct: 30 RGVCTVVRTVTPKKPNSALRKVAKV 54
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 23.2 bits (50), Expect = 6.2
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 15 IGHTPMVYLNNVVDGCVAHIAA 36
+ + +Y+ + G + H+A
Sbjct: 61 VVGSCKLYVAMGISGSIQHMAG 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.421
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,852
Number of extensions: 15157
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 27
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)