BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033859
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3
SV=1
Length = 108
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/105 (82%), Positives = 97/105 (92%), Gaps = 2/105 (1%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR F++NLI+EVAG APYE+RITELLKVG
Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRS--AGGAEKKK 110
KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS AG +EKKK
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2
SV=1
Length = 112
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 96/112 (85%), Gaps = 2/112 (1%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
M Q TGLFVGLNKGHVVT++EL PRP RKGKTSKR F++NLI+EVAG APYE+RI
Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA--EKKK 110
TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG EKKK
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2
SV=1
Length = 113
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 91/99 (91%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR F++ LIREVAG APYE+RITELLKVG
Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGA 106
KDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GGA
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGA 106
>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2
Length = 106
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 81/89 (91%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKR HFV+NLIREVAGF PYE+RI
Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKK 89
TELLKVGKDKRALKV + K+G + +K++
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESKEE 89
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3
SV=1
Length = 101
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 78/98 (79%)
Query: 10 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKD 69
+ VGLNKGH VTKK PRPS RKG S+RV V+ ++REVAG+APYERR+ ELLKVGKD
Sbjct: 4 IAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKD 63
Query: 70 KRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAE 107
KRALK+ KRKLGTH R KKKREEM+ LRKM++A E
Sbjct: 64 KRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1
Length = 110
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 72/100 (72%)
Query: 10 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKD 69
L VGL KGH VTK E PRPS RKG SK FV++LIREV GFAP+ERR ELLKV KD
Sbjct: 7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKD 66
Query: 70 KRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 109
KRALK K++LGTH R K+KR+E+SN L R A ++K
Sbjct: 67 KRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36a PE=3 SV=2
Length = 99
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 80/103 (77%), Gaps = 5/103 (4%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MAP GL VGLNKG V+TK++LP RPS RKG+ SKR FV++++REVAGFAPYERR+
Sbjct: 1 MAP-----GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRV 55
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ R A
Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36b PE=3 SV=1
Length = 99
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MAP GL VGLNKG +TK++LP RPS RKG SKR FV++++REVAGFAPYERR+
Sbjct: 1 MAP-----GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRV 55
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ R A
Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3
Length = 105
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3
Length = 105
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3
SV=1
Length = 105
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1
Length = 105
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVL 94
>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3
Length = 105
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3
SV=1
Length = 105
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MAIRYP---MAVGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2
Length = 105
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR S R+G+ +K FV+++IREV FAPYERR
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1
Length = 105
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKG+ VTK PR R+G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MAIRYP---MAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=3 SV=1
Length = 105
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 12 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKR 71
VGLNKGH VTK P+ S R+G+ +K F ++LIREV GFAPYERR ELLKV KDKR
Sbjct: 9 VGLNKGHKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKR 68
Query: 72 ALKVAKRKLGTHKRAKKKREEMSNAL 97
ALK K+++GTH RAK+KREE+SN L
Sbjct: 69 ALKFIKKRVGTHIRAKRKREELSNTL 94
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2
Length = 105
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGLNKGH VTK PR S R+ + + FV+++IREV GFAPYERR
Sbjct: 1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV K KRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVL 94
>sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3
SV=1
Length = 105
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRI 60
MA + P + VGL KGH VTK P+ S R G+ +K FV+++IREV GFAPYERR
Sbjct: 1 MAIRYP---MAVGLKKGHPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRA 57
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
ELLKV KDKRALK K+++GTH RAK+KREE+SN L
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNIL 94
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1
SV=3
Length = 104
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 9 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGK 68
GL VGLNKGH T+ + R + KG SK+ V+ L+RE+ GFAPYERR+ E+L++ K
Sbjct: 8 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 67
Query: 69 DKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
DKRALK KR++GTH+RAK KREE+ N + R A
Sbjct: 68 DKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1
Length = 105
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 1 MAPKQP-NTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERR 59
MA + P TGL VGLNKGH T + + PR S KG SKR FV+ +++EVAG APYERR
Sbjct: 1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60
Query: 60 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
+ ELL+ KDKRA K+AK++LGT RAK+K +E+ + + R A
Sbjct: 61 VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104
>sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5
SV=1
Length = 105
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 60/88 (68%)
Query: 10 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKD 69
+ VGLNKGH +TK PR S G+ +K V+ +I+EV GF PYER ELLKV KD
Sbjct: 7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKD 66
Query: 70 KRALKVAKRKLGTHKRAKKKREEMSNAL 97
K+ALK K+++GTH K+KREE+SN L
Sbjct: 67 KQALKFIKKRVGTHIHTKRKREELSNVL 94
>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3
SV=1
Length = 115
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 67/104 (64%), Gaps = 10/104 (9%)
Query: 10 LFVGLNKGHVVTKKELPPRPSDRKGK----------TSKRVHFVKNLIREVAGFAPYERR 59
L +GLNKGH +K D+K K ++ F+++L+REV G APYE+R
Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66
Query: 60 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 103
ELLKV KDKRALK KR+LGTH RAK+KREE+SN L ++R A
Sbjct: 67 TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKA 110
>sp|O14455|RL36B_YEAST 60S ribosomal protein L36-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36B PE=1 SV=3
Length = 100
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
TG+ +GLNKG VT+ P+ S +KG S R FV++L+RE+AG +PYERR+ +L++
Sbjct: 5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
+KRA KVAK++LG+ RAK K EEM+N +
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNII 94
>sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3
SV=1
Length = 105
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
+G+ G NKGH V K+ + + +K +KRV ++++IRE++GF+PYERR++ELLK G
Sbjct: 12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSG 69
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRK 99
DKRALKVAK++LG+ + KKKR++++N RK
Sbjct: 70 LDKRALKVAKKRLGSIQAGKKKRDDIANINRK 101
>sp|P05745|RL36A_YEAST 60S ribosomal protein L36-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36A PE=1 SV=3
Length = 100
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
TG+ +GLNKG VT P+ S +KG S R FV++L+RE+AG +PYERR+ +L++
Sbjct: 5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
+KRA KVAK++LG+ RAK K EEM+N +
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVEEMNNII 94
>sp|Q24F59|RL36_TETTS 60S ribosomal protein L36 OS=Tetrahymena thermophila (strain SB210)
GN=RPL36 PE=1 SV=1
Length = 104
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
Query: 9 GLFVGLNKGHVVTK--KELPPRPS-DRKGKTSKRVHFVKNLIREVAGFAPYERRITELLK 65
G VG+NKG + T+ K+L + RKGK KRV V+ +IREV GFAPYE+RI EL+K
Sbjct: 4 GQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63
Query: 66 VG--KD-KRALKVAKRKLGTHKRAKKKREEMSNALRKMR 101
G KD K+A K+A+++LGTH+RAK K+ + A+R R
Sbjct: 64 AGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRAQR 102
>sp|P47834|RL36_CANAX 60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1
Length = 99
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 70/94 (74%)
Query: 8 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVG 67
+G+ G+NKG T KE+ P+ S RKG +S+R FV+++++EVAG APYERR+ EL++
Sbjct: 4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNA 63
Query: 68 KDKRALKVAKRKLGTHKRAKKKREEMSNALRKMR 101
+KRA K+AK++LGTHKRA +K EEM+ + + R
Sbjct: 64 GEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97
>sp|Q8SRP1|RL36_ENCCU 60S ribosomal protein L36 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL36 PE=1 SV=1
Length = 107
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 49 EVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97
E++G +P E++ LL+ + +A K+ +++LG+HKRA K E+++ L
Sbjct: 56 EISGLSPLEKKAISLLEAKNNNKAQKLLRKRLGSHKRAVAKVEKLARML 104
>sp|Q2LT41|TRMFO_SYNAS Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO
OS=Syntrophus aciditrophicus (strain SB) GN=trmFO PE=3
SV=1
Length = 441
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 14 LNKGHVVTKKELPP---RPSDRKGKTSKRV---HFVKNLIREVAGFAPYE-RRITELLKV 66
LNKGH VT E+ P P+ R ++ V N+I AG E RR+ L+
Sbjct: 24 LNKGHSVTLYEMKPVNFSPAHRSSHLAELVCSNSLRSNIIENAAGTLKEEMRRMNSLIMS 83
Query: 67 GKDKRALKVAKRKLGTHKRAKKK 89
D ++ A R L +RA K
Sbjct: 84 AADATSVP-AGRALAVDRRAFSK 105
>sp|A7H0G1|SYE2_CAMC5 Glutamate--tRNA ligase 2 OS=Campylobacter curvus (strain 525.92)
GN=gltX2 PE=3 SV=1
Length = 459
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 41 HFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKM 100
H++K L PYER E+ + G D RAL + L + + K EMS + + +
Sbjct: 309 HYIKTL--------PYERLADEMKEFGVDFRALPKGELLLNSLRERSKTLVEMSQSAKAI 360
Query: 101 RSAGGAEKKK 110
A A +K
Sbjct: 361 IDAPAAYDEK 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,676,524
Number of Sequences: 539616
Number of extensions: 1474274
Number of successful extensions: 4423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4365
Number of HSP's gapped (non-prelim): 72
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)