Query 033859
Match_columns 110
No_of_seqs 101 out of 227
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01158 Ribosomal_L36e: Ribos 100.0 7.3E-55 1.6E-59 308.2 8.0 98 6-103 1-98 (98)
2 PTZ00196 60S ribosomal protein 100.0 3.5E-54 7.7E-59 304.9 10.4 98 6-103 1-98 (98)
3 KOG3452 60S ribosomal protein 100.0 1.1E-50 2.3E-55 288.2 9.8 101 5-105 2-102 (102)
4 COG5051 RPL36A Ribosomal prote 100.0 2.3E-35 5.1E-40 207.5 8.0 93 7-99 4-96 (97)
5 KOG2659 LisH motif-containing 44.0 43 0.00093 27.2 4.3 61 39-99 83-150 (228)
6 PF10607 CLTH: CTLH/CRA C-term 39.7 95 0.0021 21.5 5.1 43 53-97 40-82 (145)
7 PRK14132 riboflavin kinase; Pr 35.7 19 0.00041 26.7 1.0 17 42-58 22-38 (126)
8 PF08068 DKCLD: DKCLD (NUC011) 34.2 22 0.00048 23.4 1.0 19 49-67 25-43 (59)
9 PF12169 DNA_pol3_gamma3: DNA 29.1 1.9E+02 0.0042 19.8 6.2 54 45-98 4-59 (143)
10 PF13058 DUF3920: Protein of u 26.5 65 0.0014 24.1 2.5 28 51-85 97-124 (126)
11 PF01982 CTP-dep_RFKase: Domai 25.0 50 0.0011 24.3 1.7 16 42-57 16-31 (121)
12 PRK14165 winged helix-turn-hel 23.8 43 0.00092 26.6 1.2 17 42-58 110-126 (217)
13 PF04328 DUF466: Protein of un 20.1 84 0.0018 20.5 1.8 21 40-60 9-29 (65)
No 1
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=100.00 E-value=7.3e-55 Score=308.17 Aligned_cols=98 Identities=66% Similarity=1.006 Sum_probs=84.5
Q ss_pred CCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033859 6 PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 6 ~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R 85 (110)
+++|||||||+||+||++.++++||+++|.+|+|++||||||+|||||||||+++||||++|+||+||||+|+|||||+|
T Consensus 1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R 80 (98)
T PF01158_consen 1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR 80 (98)
T ss_dssp --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033859 86 AKKKREEMSNALRKMRSA 103 (110)
Q Consensus 86 AKrK~eel~~vl~~~Rk~ 103 (110)
||+|+|||+|||++||++
T Consensus 81 AKrKrEel~~vl~~~rk~ 98 (98)
T PF01158_consen 81 AKRKREELSNVLAAMRKA 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999985
No 2
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=100.00 E-value=3.5e-54 Score=304.91 Aligned_cols=98 Identities=66% Similarity=1.016 Sum_probs=95.8
Q ss_pred CCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033859 6 PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 6 ~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R 85 (110)
+++||||||||||+||++.++++||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|
T Consensus 1 ~~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~R 80 (98)
T PTZ00196 1 PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKR 80 (98)
T ss_pred CCCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033859 86 AKKKREEMSNALRKMRSA 103 (110)
Q Consensus 86 AKrK~eel~~vl~~~Rk~ 103 (110)
||+|+|||++||++||+.
T Consensus 81 aK~Kreel~~vl~~~rkk 98 (98)
T PTZ00196 81 AKAKRDEIQEALRAQRKK 98 (98)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999973
No 3
>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-50 Score=288.19 Aligned_cols=101 Identities=68% Similarity=0.960 Sum_probs=98.0
Q ss_pred CCCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhH
Q 033859 5 QPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHK 84 (110)
Q Consensus 5 ~~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~ 84 (110)
+..+|++||||+||++|++++.||+|+++|.+|+|++||+|||+|||||||||+++||||++|+||+|+||+|+|||||+
T Consensus 2 ~~~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~ 81 (102)
T KOG3452|consen 2 AVCYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHK 81 (102)
T ss_pred CcccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 033859 85 RAKKKREEMSNALRKMRSAGG 105 (110)
Q Consensus 85 RAKrK~eel~~vl~~~Rk~~a 105 (110)
|||+|+|||+|||++||++++
T Consensus 82 RAk~KrEELsnvl~~~rk~~~ 102 (102)
T KOG3452|consen 82 RAKRKREELSNVLAAMRKAHA 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999764
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-35 Score=207.48 Aligned_cols=93 Identities=53% Similarity=0.896 Sum_probs=90.6
Q ss_pred CccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033859 7 NTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRA 86 (110)
Q Consensus 7 ~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~RA 86 (110)
..|+++|||+|-+||++...+|||.++|.+++|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||
T Consensus 4 ~~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRA 83 (97)
T COG5051 4 APGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRA 83 (97)
T ss_pred ccchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 033859 87 KKKREEMSNALRK 99 (110)
Q Consensus 87 KrK~eel~~vl~~ 99 (110)
+.|.|||.++|++
T Consensus 84 kaKvEel~~~i~~ 96 (97)
T COG5051 84 KAKVEELTSVIQS 96 (97)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 5
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.01 E-value=43 Score=27.19 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhccch------hHHHHHHHHhhcchhHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Q 033859 39 RVHFVKNLIREVAGFAP------YERRITELLKVGKDKRALKVAKRKLGTHK-RAKKKREEMSNALRK 99 (110)
Q Consensus 39 r~kfVr~vIrEv~GfaP------YEkr~~ELlk~skdKrAlKf~KKRlGth~-RAKrK~eel~~vl~~ 99 (110)
=..++.++-.|+..-.+ -..+.+|||+.++-..|++|+.-+|--.- ..-.+.++|..++..
T Consensus 83 Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~l 150 (228)
T KOG2659|consen 83 AIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLAL 150 (228)
T ss_pred HHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 34556666666666554 35699999999999999999999884332 222678888777643
No 6
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=39.69 E-value=95 Score=21.48 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 033859 53 FAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNAL 97 (110)
Q Consensus 53 faPYEkr~~ELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl 97 (110)
|.=+-...+|||+.++--.|+.|+++.+ ++-- ....+++..++
T Consensus 40 f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~-~~~~~~l~~~~ 82 (145)
T PF10607_consen 40 FELRCQQFIELLREGDIMEAIEYARKHL-SPFN-DEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhH-HHHHHHHHHHH
Confidence 3445567899999999999999999988 4222 23444454443
No 7
>PRK14132 riboflavin kinase; Provisional
Probab=35.73 E-value=19 Score=26.71 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=14.3
Q ss_pred HHHHHHHHhhccchhHH
Q 033859 42 FVKNLIREVAGFAPYER 58 (110)
Q Consensus 42 fVr~vIrEv~GfaPYEk 58 (110)
..++-++|.+||.||.=
T Consensus 22 ~Y~~qf~~~LGf~PyPG 38 (126)
T PRK14132 22 PYKEKFKEKLGFTPYEG 38 (126)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 45788999999999963
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=34.18 E-value=22 Score=23.44 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=13.5
Q ss_pred HhhccchhHHHHHHHHhhc
Q 033859 49 EVAGFAPYERRITELLKVG 67 (110)
Q Consensus 49 Ev~GfaPYEkr~~ELlk~s 67 (110)
.-+|..|++|-+-|+|+.|
T Consensus 25 ~~~G~~P~~R~i~~~i~~G 43 (59)
T PF08068_consen 25 PPYGCSPLKRPIEEYIKYG 43 (59)
T ss_dssp TTSS--GGGS-HHHHHHTE
T ss_pred cccCcCcccCCHHHHHhCC
Confidence 4589999999999999854
No 9
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=29.14 E-value=1.9e+02 Score=19.83 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.9
Q ss_pred HHHHHhhccchhHH--HHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 033859 45 NLIREVAGFAPYER--RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALR 98 (110)
Q Consensus 45 ~vIrEv~GfaPYEk--r~~ELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl~ 98 (110)
+-|+++.|+.|.|. .+++.|-.++-..|+.++..=+-.-+-...=.++|.++++
T Consensus 4 e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R 59 (143)
T PF12169_consen 4 EDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLR 59 (143)
T ss_dssp HHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56899999999998 6667777788888998888755443444444445544443
No 10
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=26.50 E-value=65 Score=24.13 Aligned_cols=28 Identities=50% Similarity=0.624 Sum_probs=22.3
Q ss_pred hccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033859 51 AGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 51 ~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R 85 (110)
.|-.|||.|.||- | |..|+-..|-..+|
T Consensus 97 vg~e~yEeR~ie~-----D--Ar~FAe~kl~ey~~ 124 (126)
T PF13058_consen 97 VGKEPYEERWIEK-----D--ARAFAERKLDEYKR 124 (126)
T ss_pred eccchHHHHHHHH-----H--HHHHHHHHHHHHhc
Confidence 7999999999984 5 88999887765443
No 11
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=24.98 E-value=50 Score=24.28 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=10.7
Q ss_pred HHHHHHHHhhccchhH
Q 033859 42 FVKNLIREVAGFAPYE 57 (110)
Q Consensus 42 fVr~vIrEv~GfaPYE 57 (110)
..++-++|.+||.||.
T Consensus 16 ~Y~~qf~~~LGf~PyP 31 (121)
T PF01982_consen 16 GYRRQFREKLGFEPYP 31 (121)
T ss_dssp HHHHHHHHHCSS---S
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3677889999999995
No 12
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=23.77 E-value=43 Score=26.56 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.3
Q ss_pred HHHHHHHHhhccchhHH
Q 033859 42 FVKNLIREVAGFAPYER 58 (110)
Q Consensus 42 fVr~vIrEv~GfaPYEk 58 (110)
..++-++|.+||.||.=
T Consensus 110 ~Y~~~f~~~lGf~PypG 126 (217)
T PRK14165 110 GYKIQFEEKLGFIPYPG 126 (217)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 46788999999999964
No 13
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=20.10 E-value=84 Score=20.53 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhhccchhHHHH
Q 033859 40 VHFVKNLIREVAGFAPYERRI 60 (110)
Q Consensus 40 ~kfVr~vIrEv~GfaPYEkr~ 60 (110)
.+-|+..+++++|..-||+=+
T Consensus 9 ~~~~~~~~r~l~G~~~Ye~Yv 29 (65)
T PF04328_consen 9 WRRVRWYARLLVGEPDYERYV 29 (65)
T ss_pred HHHHHHHHHHhcCcHHHHHHH
Confidence 456889999999999999854
Done!