Query 033859
Match_columns 110
No_of_seqs 101 out of 227
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_k 60S ribosomal protein L 100.0 2.2E-58 7.5E-63 331.7 -1.9 105 1-105 1-105 (112)
2 3izc_k 60S ribosomal protein R 100.0 2E-56 6.7E-61 316.4 1.6 98 6-103 3-100 (100)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 2.6E-54 8.8E-59 307.3 10.3 96 7-102 2-103 (104)
4 3qks_C DNA double-strand break 47.8 6.2 0.00021 22.7 0.9 13 53-65 4-16 (34)
5 3r0a_A Putative transcriptiona 38.7 24 0.00083 23.3 2.9 27 43-69 14-40 (123)
6 2oyn_A Hypothetical protein MJ 26.7 28 0.00097 25.3 1.7 17 41-57 27-43 (146)
7 2yy0_A C-MYC-binding protein; 22.6 95 0.0033 18.6 3.3 10 72-81 3-12 (53)
8 3mxn_A RECQ-mediated genome in 18.8 93 0.0032 22.9 3.2 50 10-60 37-95 (157)
9 1xu0_A Prion protein, XLPRP; a 12.7 94 0.0032 22.4 1.7 15 38-52 109-123 (130)
10 3ld1_A Replicase polyprotein 1 12.3 1.2E+02 0.0039 24.6 2.4 20 47-66 85-104 (359)
No 1
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=2.2e-58 Score=331.67 Aligned_cols=105 Identities=90% Similarity=1.337 Sum_probs=68.8
Q ss_pred CCCCCCCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 033859 1 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKL 80 (110)
Q Consensus 1 ~~~~~~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRl 80 (110)
|+|+++++|||||||+||+||+|.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+||
T Consensus 1 m~~~~~~~~iavGlnKGhkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRl 80 (112)
T 3iz5_k 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (112)
T ss_dssp -----------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCC
T ss_pred CCCCCCCCCeeeecCCCcccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc
Q 033859 81 GTHKRAKKKREEMSNALRKMRSAGG 105 (110)
Q Consensus 81 Gth~RAKrK~eel~~vl~~~Rk~~a 105 (110)
|||+|||+|+|||+|||++||++++
T Consensus 81 Gth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 81 GTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp SHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999755
No 2
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=2e-56 Score=316.36 Aligned_cols=98 Identities=47% Similarity=0.752 Sum_probs=76.0
Q ss_pred CCccceeeecCCceecccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 033859 6 PNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKR 85 (110)
Q Consensus 6 ~~~giavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~R 85 (110)
+++|||||||+||+||++.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|
T Consensus 3 ~~~~iavGlnKGhkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~R 82 (100)
T 3izc_k 3 VKTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTR 82 (100)
T ss_dssp ---------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSC
T ss_pred CccceeeeccCCcccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033859 86 AKKKREEMSNALRKMRSA 103 (110)
Q Consensus 86 AKrK~eel~~vl~~~Rk~ 103 (110)
||+|+|||+|||++||++
T Consensus 83 AKrKreel~~vl~~~Rk~ 100 (100)
T 3izc_k 83 AKAKVEEMNNIIAASRRH 100 (100)
T ss_dssp SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999973
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=2.6e-54 Score=307.28 Aligned_cols=96 Identities=50% Similarity=0.795 Sum_probs=94.6
Q ss_pred CccceeeecCCceec---ccCCCCCCCCCcCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 033859 7 NTGLFVGLNKGHVVT---KKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGK---DKRALKVAKRKL 80 (110)
Q Consensus 7 ~~giavGlnKGhkvt---k~~~~~r~s~~kg~~tkr~kfVr~vIrEv~GfaPYEkr~~ELlk~sk---dKrAlKf~KKRl 80 (110)
++|||||||+||+|| ++.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+ |||||||+|+||
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl 81 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence 589999999999999 99999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 033859 81 GTHKRAKKKREEMSNALRKMRS 102 (110)
Q Consensus 81 Gth~RAKrK~eel~~vl~~~Rk 102 (110)
|||+|||+|+|||+|||++||+
T Consensus 82 Gth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 82 GTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999996
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=47.77 E-value=6.2 Score=22.72 Aligned_cols=13 Identities=31% Similarity=0.720 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHh
Q 033859 53 FAPYERRITELLK 65 (110)
Q Consensus 53 faPYEkr~~ELlk 65 (110)
|.|+|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=38.70 E-value=24 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHhhccchhHHHHHHHHhhcch
Q 033859 43 VKNLIREVAGFAPYERRITELLKVGKD 69 (110)
Q Consensus 43 Vr~vIrEv~GfaPYEkr~~ELlk~skd 69 (110)
+.+++..+.||.|.|..++.+|-....
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~ 40 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPD 40 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 467788889999999999999875443
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=26.68 E-value=28 Score=25.28 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhccchhH
Q 033859 41 HFVKNLIREVAGFAPYE 57 (110)
Q Consensus 41 kfVr~vIrEv~GfaPYE 57 (110)
.+.++-++|.+||.||.
T Consensus 27 ~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 27 PPYKEIFKKILGFEPYE 43 (146)
T ss_dssp HHHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhCCcCCC
Confidence 45788999999999995
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.58 E-value=95 Score=18.62 Aligned_cols=10 Identities=50% Similarity=0.694 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 033859 72 ALKVAKRKLG 81 (110)
Q Consensus 72 AlKf~KKRlG 81 (110)
|+.|+|+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6777777777
No 8
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=18.82 E-value=93 Score=22.86 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=30.4
Q ss_pred ceeeecCCceecccCCCCCCCCCcCCC---------CchhHHHHHHHHHhhccchhHHHH
Q 033859 10 LFVGLNKGHVVTKKELPPRPSDRKGKT---------SKRVHFVKNLIREVAGFAPYERRI 60 (110)
Q Consensus 10 iavGlnKGhkvtk~~~~~r~s~~kg~~---------tkr~kfVr~vIrEv~GfaPYEkr~ 60 (110)
..++-=||+.+|=. ...+.+.-+=.+ .=-+.|..+|+.+..||+|-|-..
T Consensus 37 ~~~~kVKafI~tl~-~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~ 95 (157)
T 3mxn_A 37 VTTVKVKAFIVTLT-GNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQ 95 (157)
T ss_dssp CEEEEEEEEEEEEC-SCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHH
T ss_pred ceEEEEEEEEEEec-cceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHH
Confidence 45566688887732 122222211112 223468999999999999999544
No 9
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=12.66 E-value=94 Score=22.39 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHhhc
Q 033859 38 KRVHFVKNLIREVAG 52 (110)
Q Consensus 38 kr~kfVr~vIrEv~G 52 (110)
-.+++++.||+|+|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478899999999993
No 10
>3ld1_A Replicase polyprotein 1A; globular like, HOST cytoplasm, HOST membrane, membrane, META binding, protease, RNA-binding; 2.50A {Avian infectious bronchitis virus}
Probab=12.33 E-value=1.2e+02 Score=24.62 Aligned_cols=20 Identities=35% Similarity=0.808 Sum_probs=18.2
Q ss_pred HHHhhccchhHHHHHHHHhh
Q 033859 47 IREVAGFAPYERRITELLKV 66 (110)
Q Consensus 47 IrEv~GfaPYEkr~~ELlk~ 66 (110)
+.++.|.+|+-++--|||+.
T Consensus 85 ledifgvsp~arkyrellkt 104 (359)
T 3ld1_A 85 LEDIFGVSPFARKYRELLKT 104 (359)
T ss_dssp HHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 57899999999999999994
Done!