Query 033859
Match_columns 110
No_of_seqs 101 out of 227
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 11:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 35.1 3.9 0.00028 22.3 0.1 8 51-58 15-22 (35)
2 d1sfxa_ a.4.5.50 (A:) Hypothet 29.8 20 0.0015 21.7 2.9 16 51-66 16-31 (109)
3 d2bj7a1 a.43.1.3 (A:1-50) Nick 19.0 27 0.002 19.7 1.8 16 36-51 27-42 (50)
4 d1tuaa1 d.51.1.1 (A:1-84) Hypo 18.1 25 0.0018 21.2 1.6 25 38-64 57-82 (84)
5 d3ctaa2 b.43.5.2 (A:90-220) CT 17.9 20 0.0015 23.9 1.1 16 43-58 26-41 (131)
6 d2hzaa1 a.43.1.3 (A:1-48) Nick 17.2 38 0.0027 18.9 2.1 16 36-51 25-40 (48)
7 d2hkja2 d.14.1.3 (A:307-470) T 17.1 63 0.0046 22.3 3.7 25 70-94 135-159 (164)
8 d3bqoa1 a.146.1.1 (A:62-265) T 17.1 68 0.005 22.8 4.0 51 41-99 109-159 (204)
9 d2vbua1 b.43.5.2 (A:2-132) CTP 17.1 22 0.0016 23.6 1.2 15 43-57 26-40 (131)
10 d1h6pa_ a.146.1.1 (A:) TRF2 {H 14.9 1.1E+02 0.0079 21.7 4.6 40 60-99 120-159 (203)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.11 E-value=3.9 Score=22.33 Aligned_cols=8 Identities=63% Similarity=1.174 Sum_probs=6.8
Q ss_pred hccchhHH
Q 033859 51 AGFAPYER 58 (110)
Q Consensus 51 ~GfaPYEk 58 (110)
.||+|.|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 48999997
No 2
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.76 E-value=20 Score=21.70 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.1
Q ss_pred hccchhHHHHHHHHhh
Q 033859 51 AGFAPYERRITELLKV 66 (110)
Q Consensus 51 ~GfaPYEkr~~ELlk~ 66 (110)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999888753
No 3
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.95 E-value=27 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHHHhh
Q 033859 36 TSKRVHFVKNLIREVA 51 (110)
Q Consensus 36 ~tkr~kfVr~vIrEv~ 51 (110)
-+-|..++||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 3568999999999863
No 4
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=18.10 E-value=25 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHh-hccchhHHHHHHHH
Q 033859 38 KRVHFVKNLIREV-AGFAPYERRITELL 64 (110)
Q Consensus 38 kr~kfVr~vIrEv-~GfaPYEkr~~ELl 64 (110)
....-++++|+++ -||+|=. ++.||
T Consensus 57 ~a~~~a~~iI~aI~rGf~Pe~--a~~ll 82 (84)
T d1tuaa1 57 VNLMKAAEVVKAISLGFPPEK--AFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHHTCCHHH--HGGGG
T ss_pred HHHHHHHHHHHHHhCCCChHH--HHHhc
Confidence 3456789999999 4999942 44444
No 5
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.92 E-value=20 Score=23.92 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHHHhhccchhHH
Q 033859 43 VKNLIREVAGFAPYER 58 (110)
Q Consensus 43 Vr~vIrEv~GfaPYEk 58 (110)
.++-++|.+||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3677899999999964
No 6
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.19 E-value=38 Score=18.86 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHhh
Q 033859 36 TSKRVHFVKNLIREVA 51 (110)
Q Consensus 36 ~tkr~kfVr~vIrEv~ 51 (110)
-+-|..+|||+||+..
T Consensus 25 y~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 25 YNNRSEAIRDILRSAL 40 (48)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 3668999999999863
No 7
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=17.12 E-value=63 Score=22.26 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH
Q 033859 70 KRALKVAKRKLGTHKRAKKKREEMS 94 (110)
Q Consensus 70 KrAlKf~KKRlGth~RAKrK~eel~ 94 (110)
+.||..+=++|.+|.+-++|.++..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998877766654
No 8
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.11 E-value=68 Score=22.85 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 033859 41 HFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 99 (110)
Q Consensus 41 kfVr~vIrEv~GfaPYEkr~~ELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl~~ 99 (110)
.-++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..||..
T Consensus 109 e~i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~~ 159 (204)
T d3bqoa1 109 EEIQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 159 (204)
T ss_dssp HHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 34666676654 6666788999999999999667655556678888888753
No 9
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=17.09 E-value=22 Score=23.62 Aligned_cols=15 Identities=40% Similarity=1.003 Sum_probs=13.2
Q ss_pred HHHHHHHhhccchhH
Q 033859 43 VKNLIREVAGFAPYE 57 (110)
Q Consensus 43 Vr~vIrEv~GfaPYE 57 (110)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999994
No 10
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.86 E-value=1.1e+02 Score=21.70 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred HHHHHhhcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 033859 60 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRK 99 (110)
Q Consensus 60 ~~ELlk~skdKrAlKf~KKRlGth~RAKrK~eel~~vl~~ 99 (110)
++=-++.+..|.|...+++=.|.--.-...+.+|..||..
T Consensus 120 V~VCmekg~Fk~A~eil~r~f~~~~~~~~lr~kL~~II~~ 159 (203)
T d1h6pa_ 120 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 159 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---------CHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Confidence 3444568999999999999888666666777888888754
Done!