Query 033860
Match_columns 110
No_of_seqs 109 out of 831
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10645 divalent-cation toler 100.0 6.9E-48 1.5E-52 269.5 13.6 108 2-109 3-112 (112)
2 COG1324 CutA Uncharacterized p 100.0 2.2E-47 4.8E-52 263.6 12.1 101 9-109 2-104 (104)
3 PF03091 CutA1: CutA1 divalent 100.0 1.2E-46 2.7E-51 259.2 11.0 100 10-109 1-102 (102)
4 KOG3338 Divalent cation tolera 100.0 1.7E-39 3.7E-44 233.1 3.4 100 11-110 46-147 (153)
5 COG3323 Uncharacterized protei 97.9 2.3E-05 4.9E-10 54.9 4.6 82 11-95 8-106 (109)
6 smart00049 DEP Domain found in 90.2 0.66 1.4E-05 29.1 4.2 35 17-52 36-76 (77)
7 cd04450 DEP_RGS7-like DEP (Dis 83.4 1.3 2.9E-05 29.1 2.8 27 16-42 43-69 (88)
8 COG4259 Uncharacterized protei 79.6 0.84 1.8E-05 32.2 0.8 55 25-82 9-65 (121)
9 PF12461 DUF3688: Protein of u 79.5 1.3 2.9E-05 29.8 1.7 11 44-54 59-69 (91)
10 PF00610 DEP: Domain found in 77.1 2.5 5.4E-05 26.2 2.4 25 17-41 35-59 (74)
11 cd04371 DEP DEP domain, named 65.9 7.9 0.00017 24.1 2.8 24 17-40 44-67 (81)
12 PF13793 Pribosyltran_N: N-ter 65.6 42 0.0009 23.1 7.6 79 12-90 2-84 (116)
13 cd04439 DEP_1_P-Rex DEP (Dishe 64.5 7.6 0.00016 25.4 2.6 26 16-41 43-68 (81)
14 cd04449 DEP_DEPDC5-like DEP (D 63.4 8.1 0.00018 25.1 2.6 24 17-40 46-69 (83)
15 cd04437 DEP_Epac DEP (Dishevel 62.4 22 0.00049 25.2 4.9 68 17-84 47-117 (125)
16 cd04441 DEP_2_DEP6 DEP (Dishev 61.7 9.4 0.0002 25.4 2.7 24 17-40 48-71 (85)
17 cd04438 DEP_dishevelled DEP (D 61.5 9.3 0.0002 25.2 2.6 24 17-40 46-69 (84)
18 cd04442 DEP_1_DEP6 DEP (Dishev 59.4 11 0.00025 24.8 2.7 23 17-39 44-66 (82)
19 PRK04923 ribose-phosphate pyro 58.7 90 0.0019 25.2 8.3 75 7-81 3-81 (319)
20 PF09961 DUF2195: Uncharacteri 58.6 2.6 5.7E-05 30.1 -0.4 35 26-69 17-52 (121)
21 cd04443 DEP_GPR155 DEP (Dishev 58.3 12 0.00025 24.7 2.6 24 17-40 46-69 (83)
22 cd04448 DEP_PIKfyve DEP (Dishe 57.7 12 0.00026 24.3 2.7 23 17-39 44-66 (81)
23 cd04444 DEP_PLEK2 DEP (Disheve 57.4 9.2 0.0002 26.8 2.1 26 16-41 46-71 (109)
24 cd04436 DEP_fRgd2 DEP (Disheve 56.1 13 0.00029 24.8 2.7 20 17-36 45-64 (84)
25 PF14120 YhzD: YhzD-like prote 54.9 15 0.00032 23.3 2.6 20 15-34 21-40 (61)
26 cd04440 DEP_2_P-Rex DEP (Dishe 53.4 15 0.00033 24.9 2.6 25 16-40 52-76 (93)
27 PRK14751 tetracycline resistan 48.9 12 0.00026 20.0 1.2 14 39-52 8-21 (28)
28 PF03802 CitX: Apo-citrate lya 48.5 19 0.00042 26.6 2.8 31 53-83 77-107 (170)
29 PHA00446 hypothetical protein 46.3 31 0.00068 23.2 3.2 38 43-80 28-66 (89)
30 KOG1250 Threonine/serine dehyd 46.0 23 0.0005 30.4 3.1 75 11-89 161-247 (457)
31 KOG3174 F-actin capping protei 45.9 20 0.00043 28.7 2.6 27 41-67 112-139 (275)
32 PF13151 DUF3990: Protein of u 43.6 90 0.0019 22.6 5.6 73 10-95 25-107 (154)
33 cd04446 DEP_DEPDC4 DEP (Dishev 42.4 26 0.00057 23.8 2.5 23 17-39 51-73 (95)
34 PF14004 DUF4227: Protein of u 41.5 14 0.00031 23.9 1.0 25 73-97 27-51 (71)
35 cd07998 WGR_DNA_ligase WGR dom 39.3 27 0.00058 23.0 2.1 21 16-36 49-69 (77)
36 PF14280 DUF4365: Domain of un 39.1 61 0.0013 21.9 4.0 49 52-100 39-98 (138)
37 PF02629 CoA_binding: CoA bind 39.0 88 0.0019 20.2 4.6 29 14-43 67-95 (96)
38 PF02863 Arg_repressor_C: Argi 38.6 66 0.0014 20.1 3.8 33 56-91 11-43 (70)
39 PF11443 DUF2828: Domain of un 37.9 40 0.00086 29.5 3.4 32 66-98 459-490 (534)
40 PF03736 EPTP: EPTP domain; I 36.3 31 0.00067 19.5 1.8 9 45-53 36-44 (44)
41 cd01917 ACS_2 Acetyl-CoA synth 34.8 77 0.0017 25.8 4.4 31 10-40 130-160 (287)
42 cd07996 WGR_MMR_like WGR domai 34.4 47 0.001 20.5 2.6 22 14-35 46-67 (74)
43 PF01115 F_actin_cap_B: F-acti 33.8 40 0.00087 26.7 2.6 25 42-66 114-140 (242)
44 TIGR03124 ctirate_citX holo-AC 33.8 46 0.001 24.6 2.8 39 45-83 67-105 (165)
45 COG2344 AT-rich DNA-binding pr 31.8 95 0.0021 24.2 4.3 33 10-43 147-179 (211)
46 PRK11178 uridine phosphorylase 30.7 1E+02 0.0022 23.8 4.4 72 13-92 19-91 (251)
47 PRK00934 ribose-phosphate pyro 30.2 2.7E+02 0.0059 21.8 7.6 52 13-65 2-54 (285)
48 PF08076 TetM_leader: Tetracyc 30.2 28 0.0006 18.7 0.8 13 40-52 9-21 (28)
49 PF10740 DUF2529: Protein of u 30.0 79 0.0017 23.8 3.5 32 5-36 79-110 (172)
50 PRK10343 RNA-binding protein Y 29.1 1.2E+02 0.0026 20.6 4.0 37 16-52 52-88 (97)
51 PF04475 DUF555: Protein of un 28.6 65 0.0014 22.4 2.6 20 16-35 79-98 (102)
52 PF09391 DUF2000: Protein of u 28.6 1.5E+02 0.0032 21.1 4.6 43 60-105 56-98 (133)
53 PRK02458 ribose-phosphate pyro 28.0 3.2E+02 0.007 22.0 8.7 58 8-66 7-65 (323)
54 cd06229 M14_Endopeptidase_I Pe 27.7 2.8E+02 0.0061 21.2 6.8 76 19-107 147-222 (255)
55 PF01037 AsnC_trans_reg: AsnC 26.7 92 0.002 18.4 2.9 34 61-99 1-36 (74)
56 KOG0333 U5 snRNP-like RNA heli 26.7 4.8E+02 0.01 23.6 8.5 80 12-107 455-536 (673)
57 cd04087 PTPA Phosphotyrosyl ph 26.3 1E+02 0.0022 24.7 3.7 38 63-106 28-65 (266)
58 KOG1478 3-keto sterol reductas 26.1 3.5E+02 0.0077 22.3 6.8 63 10-92 3-67 (341)
59 PRK03922 hypothetical protein; 25.7 74 0.0016 22.5 2.5 21 15-35 80-100 (113)
60 PRK05412 putative nucleotide-b 25.2 2.7E+02 0.0058 20.8 5.6 56 16-86 98-153 (161)
61 COG1885 Uncharacterized protei 25.0 77 0.0017 22.3 2.5 22 15-36 80-101 (115)
62 PRK01259 ribose-phosphate pyro 24.5 3.7E+02 0.0079 21.5 7.4 53 12-64 2-55 (309)
63 PF04461 DUF520: Protein of un 23.7 2.9E+02 0.0063 20.6 5.5 57 15-86 97-153 (160)
64 PRK09529 bifunctional acetyl-C 23.3 1.4E+02 0.003 27.3 4.3 31 10-40 138-168 (711)
65 PRK00441 argR arginine repress 23.3 1.5E+02 0.0032 21.4 3.8 34 55-91 87-120 (149)
66 PF13241 NAD_binding_7: Putati 23.2 1.7E+02 0.0037 19.1 3.9 35 10-44 61-95 (103)
67 cd08591 PI-PLCc_beta Catalytic 23.1 3.9E+02 0.0085 21.3 6.6 70 20-99 29-104 (257)
68 TIGR01529 argR_whole arginine 23.1 1.5E+02 0.0033 21.2 3.9 34 55-91 85-118 (146)
69 cd08625 PI-PLCc_beta3 Catalyti 22.7 3.4E+02 0.0075 21.5 6.1 80 20-108 29-118 (258)
70 TIGR00869 sec62 protein transl 22.6 67 0.0015 25.2 2.1 31 13-43 46-76 (232)
71 PF05406 WGR: WGR domain; Int 22.3 86 0.0019 19.8 2.2 23 13-35 48-70 (81)
72 TIGR01719 euk_UDPppase uridine 22.2 1.4E+02 0.0031 23.6 3.9 32 12-43 32-63 (287)
73 PHA00540 hypothetical protein 21.8 61 0.0013 28.8 1.8 22 44-65 238-259 (715)
74 PRK05783 hypothetical protein; 21.6 1.8E+02 0.004 19.2 3.7 27 10-36 43-70 (84)
75 TIGR01006 polys_exp_MPA1 polys 21.4 1.9E+02 0.0041 21.4 4.3 23 10-32 120-142 (226)
76 PF13193 AMP-binding_C: AMP-bi 21.3 2E+02 0.0043 17.2 3.9 29 55-86 25-54 (73)
77 PRK08057 cobalt-precorrin-6x r 21.3 3.3E+02 0.0072 21.1 5.7 61 10-80 4-64 (248)
78 PRK04280 arginine repressor; P 21.3 1.6E+02 0.0034 21.3 3.6 34 55-91 87-120 (148)
79 PRK11538 ribosome-associated p 20.4 2.1E+02 0.0045 19.5 3.9 46 10-62 35-80 (105)
80 PF03095 PTPA: Phosphotyrosyl 20.4 69 0.0015 25.9 1.8 38 64-106 52-89 (299)
81 cd08623 PI-PLCc_beta1 Catalyti 20.1 3.3E+02 0.0071 21.7 5.5 71 20-99 29-105 (258)
82 PRK06552 keto-hydroxyglutarate 20.1 1.8E+02 0.0039 22.1 3.9 26 10-35 14-39 (213)
83 PF05036 SPOR: Sporulation rel 20.0 90 0.002 18.3 1.9 20 12-31 46-65 (76)
No 1
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=100.00 E-value=6.9e-48 Score=269.51 Aligned_cols=108 Identities=37% Similarity=0.717 Sum_probs=103.1
Q ss_pred CCCCCCCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHH
Q 033860 2 EGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKA 79 (110)
Q Consensus 2 ~~~~~~~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~ 79 (110)
.++|++..+++|+||+||.++|++||+.||++||||||||+|+|+|+|+|+|+ +++|+.|+|||+.+++++|.++|++
T Consensus 3 ~~~~~~~~~~lV~tT~p~~e~A~~ia~~Lve~rLaACvni~p~i~S~Y~W~G~i~~~~E~~l~iKT~~~~~~~l~~~I~~ 82 (112)
T PRK10645 3 DEKSSNTDAVVVLCTAPDEATAQDLAAKVLAEKLAACVTLLPGATSLYYWEGKLEQEYEVQMLLKTTVSHQQALLECLKS 82 (112)
T ss_pred cccCCCCCEEEEEEeCCCHHHHHHHHHHHHHCCeeEEEecCCCeeEEEEECCEEeeeeEEEEEEEeCHHHHHHHHHHHHH
Confidence 35677667899999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred hCCCccceEEEEeCCCCCHhHHHHHHhhcC
Q 033860 80 NHEYDVPEVIALPITGGSQPYLEWLKSSTR 109 (110)
Q Consensus 80 ~HpYevPeIi~~~i~~~~~~Yl~Wi~~~~~ 109 (110)
+||||+|||+++|+.+|+++|++|+.++++
T Consensus 83 ~HpYevPeIi~~~i~~g~~~Yl~Wi~~~~~ 112 (112)
T PRK10645 83 HHPYQTPELLVLPVTHGDTDYLSWLNASLR 112 (112)
T ss_pred hCCCCCCEEEEEEcccCCHHHHHHHHHhcC
Confidence 999999999999999999999999999874
No 2
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=263.60 Aligned_cols=101 Identities=45% Similarity=0.849 Sum_probs=98.4
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCCCccc
Q 033860 9 PSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHEYDVP 86 (110)
Q Consensus 9 ~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevP 86 (110)
++++|+||+||.++|++|||.||++|||||||++|+|+|+|||+|+ ++.|+.|+|||+++++++|.++|+++|||++|
T Consensus 2 ~~~~Vl~T~pd~e~Ae~iar~lleerLaACvni~p~i~S~Y~W~G~Iee~~E~~liiKT~~~~~~~l~~~ikelHpYevP 81 (104)
T COG1324 2 MMVLVLTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWWEGKIEEDEEVALIIKTTSEKFEELIERIKELHPYEVP 81 (104)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhhhheecccCccEEEEECCeeeecceeEEEEEehHHhHHHHHHHHHHhCCCCCc
Confidence 3699999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEeCCCCCHhHHHHHHhhcC
Q 033860 87 EVIALPITGGSQPYLEWLKSSTR 109 (110)
Q Consensus 87 eIi~~~i~~~~~~Yl~Wi~~~~~ 109 (110)
||+++|++.|+++|++||+++++
T Consensus 82 eIi~i~v~~g~~eYL~Wl~~~~~ 104 (104)
T COG1324 82 EIIALPVDNGLPEYLEWLNEETK 104 (104)
T ss_pred eEEEEEeccCCHHHHHHHHHhcC
Confidence 99999999999999999999874
No 3
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=100.00 E-value=1.2e-46 Score=259.17 Aligned_cols=100 Identities=45% Similarity=0.903 Sum_probs=94.3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCCCccce
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHEYDVPE 87 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPe 87 (110)
+++|+||+||+++|++|||.||++|||||+|++|+|+|+|+|+|+ +++|+.|++||+.+++++|.++|+++||||+||
T Consensus 1 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~i~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~i~~~HpYe~Pe 80 (102)
T PF03091_consen 1 MILVYTTCPDREEAERIARALVEERLAACVNIIPPITSIYRWEGKIEEEEEVLLLIKTTASRFDELEERIRELHPYEVPE 80 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS--
T ss_pred CEEEEEEcCCHHHHHHHHHHHHhCCeEEEEEecCCceeEEEECCccccceEeeEEEEecHHHHHHHHHHHHHhCCCCCCE
Confidence 589999999999999999999999999999999889999999999 999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHHhhcC
Q 033860 88 VIALPITGGSQPYLEWLKSSTR 109 (110)
Q Consensus 88 Ii~~~i~~~~~~Yl~Wi~~~~~ 109 (110)
|+++|+.+|+++|++|+.++++
T Consensus 81 Ii~~~i~~~~~~Yl~Wi~~~~~ 102 (102)
T PF03091_consen 81 IIALPIDKGNPAYLEWINEETK 102 (102)
T ss_dssp EEEEEESEEEHHHHHHHHHHT-
T ss_pred EEEEEccccCHHHHHHHHHhcC
Confidence 9999999999999999999874
No 4
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=233.09 Aligned_cols=100 Identities=61% Similarity=0.991 Sum_probs=97.3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCCCccceE
Q 033860 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEV 88 (110)
Q Consensus 11 ~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeI 88 (110)
.+.|+|+||+|.|+++||.+|++|||||+|++|+|+|+|.|+|+ +|.|+.|++||++++++.|.++|+++|||||||+
T Consensus 46 Sva~VT~P~rE~a~~~arsiV~~rLAACvNiIpeItSIY~WkgkI~edsE~ll~iKtrsSl~~~Lt~fV~~nHpYeVpEV 125 (153)
T KOG3338|consen 46 SVAYVTAPNREVAKELARSIVEERLAACVNIIPEITSIYEWKGKIVEDSEYLLIIKTRSSLHWPLTKFVRGNHPYEVPEV 125 (153)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHHHHHhhcccceehhhhhcccccchhHHHHHHHhhhhhhhHHHHHhcCCCccchhh
Confidence 58999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHHhhcCC
Q 033860 89 IALPITGGSQPYLEWLKSSTRD 110 (110)
Q Consensus 89 i~~~i~~~~~~Yl~Wi~~~~~~ 110 (110)
|++|+..|+.+|++|+++.+.|
T Consensus 126 ialpi~~gs~~YLeW~~q~v~~ 147 (153)
T KOG3338|consen 126 IALPIHLGSRPYLEWMNQCVDD 147 (153)
T ss_pred eeeccccCCcHHHHHHHHhccc
Confidence 9999999999999999988753
No 5
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=2.3e-05 Score=54.87 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=62.5
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccccceEeecC-----CceEEEE-------ecCC-----CCceeEEEeeeccchHHHH
Q 033860 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVP-----GIESVYE-------WKGE-----TDAEELLIIKTRQSLLETL 73 (110)
Q Consensus 11 ~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~-----~v~S~Y~-------W~G~-----~~~E~~l~~KT~~~~~~~l 73 (110)
+.||+ | ++..+.+-.+|-+.++..=+|..- .++..|+ -.|+ ...|+++-+.....+.+++
T Consensus 8 ~~vyV--P-~~~~e~vr~aL~~aGag~iG~Y~~C~~~~~g~G~frP~egAnP~iGevgk~e~v~E~kiE~v~~~~~~~~v 84 (109)
T COG3323 8 IEVYV--P-EEYVEQVRDALFEAGAGHIGNYDHCTFSSEGTGQFRPLEGANPFIGEVGKLEFVAEVKIEFVVPAELRAAV 84 (109)
T ss_pred EEEEe--C-HHHHHHHHHHHHhcCCcceeccceEEEEeeeeEEEeecCCCCCcccccceEEeeeeeEEEEEcCHHHHHHH
Confidence 44554 3 577888999999999876444321 1233333 2233 6789999999999999999
Q ss_pred HHHHHHhCCCccceEEEEeCCC
Q 033860 74 TEHVKANHEYDVPEVIALPITG 95 (110)
Q Consensus 74 ~~~I~~~HpYevPeIi~~~i~~ 95 (110)
.+.|++.||||.|.|-.+|+..
T Consensus 85 ~~~ik~aHPYEePa~di~~l~~ 106 (109)
T COG3323 85 LSAIKKAHPYEEPAIDVIPLLN 106 (109)
T ss_pred HHHHHHhCCCCCcceEEEEccc
Confidence 9999999999999999999874
No 6
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=90.24 E-value=0.66 Score=29.10 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhccccceEe------ecCCceEEEEec
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN------RVPGIESVYEWK 52 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn------i~~~v~S~Y~W~ 52 (110)
+.++++|..+++.|++.++.-.++ ..+ -..+|++.
T Consensus 36 ~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d-~~~~Yrf~ 76 (77)
T smart00049 36 IIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKD-SKALYRFT 76 (77)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeCCCCcCcccc-CCEEEEeC
Confidence 578999999999999999999887 222 25566654
No 7
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=83.41 E-value=1.3 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.4
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeec
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVNRV 42 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvni~ 42 (110)
+..|+++|..+|..|++.+|..+|+-.
T Consensus 43 ~~~~~~EA~~~~~~ll~~gli~~V~~~ 69 (88)
T cd04450 43 DVVDPSEALEIAALFVKYGLITPVSDH 69 (88)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 458999999999999999999999864
No 8
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.60 E-value=0.84 Score=32.25 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCC
Q 033860 25 KLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHE 82 (110)
Q Consensus 25 ~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~Hp 82 (110)
++|-.+--.-||+|+. .| .|+|.|+|= +--|..=-=-|...+..++++.+.+.-.
T Consensus 9 r~al~~av~~LagC~~-gp--KslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~a 65 (121)
T COG4259 9 RLALLLAVAALAGCGG-GP--KSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGA 65 (121)
T ss_pred HHHHHHHHHHHHHccC-CC--ccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3443444456899997 44 899999994 2122210001345666777777766543
No 9
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=79.54 E-value=1.3 Score=29.81 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=9.7
Q ss_pred CceEEEEecCC
Q 033860 44 GIESVYEWKGE 54 (110)
Q Consensus 44 ~v~S~Y~W~G~ 54 (110)
-..|+|||+|.
T Consensus 59 ~fKsvYRWdG~ 69 (91)
T PF12461_consen 59 YFKSVYRWDGV 69 (91)
T ss_pred eEEEEEEecCC
Confidence 36899999998
No 10
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=77.12 E-value=2.5 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhccccceEee
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVNR 41 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvni 41 (110)
+.|+++|..|++.|++.++..-|+-
T Consensus 35 ~~~r~eA~~l~q~Ll~~g~i~~v~~ 59 (74)
T PF00610_consen 35 VRDREEAVQLGQELLDHGFIEHVSD 59 (74)
T ss_dssp TSSHHHHHHHHHHHHHCTSEEESSS
T ss_pred ccCHHHHHHHHHHHHHCCCEEECCC
Confidence 7899999999999999999988864
No 11
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=65.93 E-value=7.9 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn 40 (110)
..++++|.++++.|++.++...++
T Consensus 44 ~~~r~ea~~~~~~ll~~g~i~~v~ 67 (81)
T cd04371 44 AITREEAVELGQALLKHGLIHHVS 67 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 378999999999999999998876
No 12
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=65.63 E-value=42 Score=23.15 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=47.7
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeeccchHHHHHHH---HHHhCCCccce
Q 033860 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTRQSLLETLTEH---VKANHEYDVPE 87 (110)
Q Consensus 12 lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~~~~~~~l~~~---I~~~HpYevPe 87 (110)
.|+.+..+.+-|++||+.|=-.---.+...||.-+..-+=++. .++.+.++--+....=+.+.+. +....-+..--
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 81 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKR 81 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSE
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcE
Confidence 5677788889999999999555555677778877777777777 8888877777766544444443 33444344434
Q ss_pred EEE
Q 033860 88 VIA 90 (110)
Q Consensus 88 Ii~ 90 (110)
|..
T Consensus 82 i~~ 84 (116)
T PF13793_consen 82 ITL 84 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 13
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=64.51 E-value=7.6 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.5
Q ss_pred eCCCHHHHHHHHHHHHhccccceEee
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVNR 41 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvni 41 (110)
.+.++++|..+++.|++.++.-.|.-
T Consensus 43 ~~~~r~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 43 EISKPEEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 46788999999999999999988753
No 14
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=63.43 E-value=8.1 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn 40 (110)
+.++++|..+++.|+++++.-.|.
T Consensus 46 ~~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 46 VDTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999987764
No 15
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=62.39 E-value=22 Score=25.22 Aligned_cols=68 Identities=7% Similarity=0.080 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhccccceEee---cCCceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHhCCCc
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVNR---VPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYD 84 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvni---~~~v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe 84 (110)
+.|+++|..+++.|+++++.-.|.- +..-..+|++.+++..=..+-.+...+-+.+....+.++=|+.
T Consensus 47 v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~~~~~~~~~eee~~~~v~~l~q~~p~~ 117 (125)
T cd04437 47 VQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSPAPLEKREAEEELQEAVTLLSQLGPDA 117 (125)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCcccchhhhhHHHHHHHHHHHHhhCcHH
Confidence 3689999999999999999998752 2223467888876111111244555566666666777776653
No 16
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=61.72 E-value=9.4 Score=25.41 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn 40 (110)
+.|+++|..+++.|+++++.-.|.
T Consensus 48 ~~sR~eAv~lgq~Ll~~gii~HV~ 71 (85)
T cd04441 48 AESRREAVQLCRRLLEHGIIQHVS 71 (85)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 679999999999999999988774
No 17
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=61.55 E-value=9.3 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn 40 (110)
..|+++|..+++.|++.++.-.|.
T Consensus 46 ~~~R~eAv~~g~~Ll~~G~i~HV~ 69 (84)
T cd04438 46 LTDRREARKYASSLLKLGYIRHTV 69 (84)
T ss_pred CCCHHHHHHHHHHHHHCCcEEecC
Confidence 468999999999999999987763
No 18
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=59.36 E-value=11 Score=24.77 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033860 17 VPNKEAGKKLAESIVKAKLAACV 39 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACv 39 (110)
+.|+++|..++++|+++++.-.|
T Consensus 44 ~~sR~eAv~lgq~Ll~~gvi~HV 66 (82)
T cd04442 44 ASDRETAIKIMQKLLDHSIIHHV 66 (82)
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 57899999999999999999888
No 19
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.70 E-value=90 Score=25.24 Aligned_cols=75 Identities=19% Similarity=0.121 Sum_probs=50.7
Q ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeec---cchHHHHHHHHHHhC
Q 033860 7 TVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTR---QSLLETLTEHVKANH 81 (110)
Q Consensus 7 ~~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~---~~~~~~l~~~I~~~H 81 (110)
.+.-.+|+....+.+-|++||+.|=-.---.....||.-+...+=.+. .++++.++--+. .+.+=+|.-.+..+-
T Consensus 3 ~~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr 81 (319)
T PRK04923 3 DQRNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALK 81 (319)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 334467888888899999999998655556677888888888888777 777766654332 334444444444443
No 20
>PF09961 DUF2195: Uncharacterized protein conserved in bacteria (DUF2195); InterPro: IPR018696 This family of various bacterial proteins has no known function.
Probab=58.59 E-value=2.6 Score=30.07 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeeccch
Q 033860 26 LAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTRQSL 69 (110)
Q Consensus 26 ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~~~~ 69 (110)
-+..-++++|+||+.+.| |+ +..+-.+.+||+-+.
T Consensus 17 ag~i~~~N~LaaCv~~~~---------~~~~~~~n~v~l~~~~~l 52 (121)
T PF09961_consen 17 AGTIQFDNALAACVDVKP---------GQPQTADNQVSLKATFSL 52 (121)
T ss_pred cCceEEeCcHHHHhcCcc---------cCccccCCeEEEEEEEEE
Confidence 334568999999999988 44 567777888876544
No 21
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=58.33 E-value=12 Score=24.70 Aligned_cols=24 Identities=0% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033860 17 VPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACvn 40 (110)
+.|+++|..++++|++.++.-.|.
T Consensus 46 ~~sR~eAv~lg~~Ll~~G~i~HV~ 69 (83)
T cd04443 46 AQDRGEAVLYGRRLLQGGVLQHIT 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999987764
No 22
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=57.66 E-value=12 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033860 17 VPNKEAGKKLAESIVKAKLAACV 39 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACv 39 (110)
+.|+++|..+++.|+++++.--|
T Consensus 44 ~~~R~eAv~~gq~Ll~~g~i~hV 66 (81)
T cd04448 44 AATRVQAIAIGQALLDAGWIECV 66 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 58899999999999999987655
No 23
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=57.38 E-value=9.2 Score=26.78 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=22.5
Q ss_pred eCCCHHHHHHHHHHHHhccccceEee
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVNR 41 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvni 41 (110)
+..++++|-.||+.|++.+|.=+|..
T Consensus 46 ~~i~R~EAv~l~q~Lmd~gli~hV~~ 71 (109)
T cd04444 46 FAASRLEAVTLASMLMEENFLRPVGV 71 (109)
T ss_pred CCCCHHHHHHHHHHHHhCCchhhHHH
Confidence 34589999999999999999988763
No 24
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=56.05 E-value=13 Score=24.83 Aligned_cols=20 Identities=5% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 033860 17 VPNKEAGKKLAESIVKAKLA 36 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLa 36 (110)
.||.+.|+++++.||..++.
T Consensus 45 ~~s~~~aE~fGQdLv~~gfi 64 (84)
T cd04436 45 EKDLDAAEAFGQDLLNQGFL 64 (84)
T ss_pred CCCHHHHHHHHHHHHhCchH
Confidence 39999999999999999988
No 25
>PF14120 YhzD: YhzD-like protein
Probab=54.92 E-value=15 Score=23.29 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.2
Q ss_pred EeCCCHHHHHHHHHHHHhcc
Q 033860 15 VTVPNKEAGKKLAESIVKAK 34 (110)
Q Consensus 15 tT~p~~e~A~~ia~~lve~r 34 (110)
.++.|.++|+.+++.+|+++
T Consensus 21 feA~~D~eAK~~G~~~L~Ek 40 (61)
T PF14120_consen 21 FEAANDEEAKEIGEQKLKEK 40 (61)
T ss_pred eecCCHHHHHHHHHHHHHHC
Confidence 46788899999999999875
No 26
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=53.43 E-value=15 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.4
Q ss_pred eCCCHHHHHHHHHHHHhccccceEe
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvn 40 (110)
-++|+++|-.+++.|++.++.-.|.
T Consensus 52 ~~~tR~eAv~~gq~Ll~~gii~HV~ 76 (93)
T cd04440 52 DCRTREEAVILGVGLCNNGFMHHVL 76 (93)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecC
Confidence 4679999999999999999988875
No 27
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=48.86 E-value=12 Score=19.99 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=11.1
Q ss_pred EeecCCceEEEEec
Q 033860 39 VNRVPGIESVYEWK 52 (110)
Q Consensus 39 vni~~~v~S~Y~W~ 52 (110)
++..|.=.|+|.|+
T Consensus 8 ~h~~psdksi~hwd 21 (28)
T PRK14751 8 MHKNPSDKSIYHWD 21 (28)
T ss_pred eecCCCcCceeeee
Confidence 45667778999997
No 28
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=48.51 E-value=19 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCCceeEEEeeeccchHHHHHHHHHHhCCC
Q 033860 53 GETDAEELLIIKTRQSLLETLTEHVKANHEY 83 (110)
Q Consensus 53 G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpY 83 (110)
..++.|..++++......+++.-.|.+.||+
T Consensus 77 ~~tGpe~~~~v~~~a~~vK~~~i~iEe~hpl 107 (170)
T PF03802_consen 77 DPTGPEAFLVVDGDAEEVKRIMIEIEESHPL 107 (170)
T ss_pred cCCcceeeEEeCCCHHHHHHHHHHHHccCcc
Confidence 3399999999999999999999999999997
No 29
>PHA00446 hypothetical protein
Probab=46.34 E-value=31 Score=23.21 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCceEEEEecCC-CCceeEEEeeeccchHHHHHHHHHHh
Q 033860 43 PGIESVYEWKGE-TDAEELLIIKTRQSLLETLTEHVKAN 80 (110)
Q Consensus 43 ~~v~S~Y~W~G~-~~~E~~l~~KT~~~~~~~l~~~I~~~ 80 (110)
++|+-+|+|++. ..+-..=-+--...+...|.+.+...
T Consensus 28 gKvTmVyRWKd~ks~kaHTQRmTLdD~Qa~rLl~~l~~A 66 (89)
T PHA00446 28 GKVTMVYRWKDHKSSKAHTQRMTLDDEQAGRLLAALTVA 66 (89)
T ss_pred CeEEEEEEecccCCchhhceeeeecHHHHHHHHHHHHHH
Confidence 468999999997 44433333333455556666655543
No 30
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=45.99 E-value=23 Score=30.39 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=60.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeecc----------chHHHHHHHHH
Q 033860 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQ----------SLLETLTEHVK 78 (110)
Q Consensus 11 ~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~----------~~~~~l~~~I~ 78 (110)
.-|..+-.|.++|+.+|..+.+++ .=.+| ||-+--|.|.|+ -..|.+=.+|+.. .++.-+...++
T Consensus 161 A~Vil~G~~~deAk~~a~~lAke~--gl~yI-~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk 237 (457)
T KOG1250|consen 161 ATVILSGEDWDEAKAFAKRLAKEN--GLTYI-PPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVK 237 (457)
T ss_pred CEEEEecccHHHHHHHHHHHHHhc--Cceec-CCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHH
Confidence 456777889999999999999998 55666 568999999998 7778877788875 57788889999
Q ss_pred HhCCCccceEE
Q 033860 79 ANHEYDVPEVI 89 (110)
Q Consensus 79 ~~HpYevPeIi 89 (110)
+.-| .+|.|=
T Consensus 238 ~~~p-~vkIIG 247 (457)
T KOG1250|consen 238 RVGP-HVKIIG 247 (457)
T ss_pred HhCC-CCceEE
Confidence 9998 676543
No 31
>KOG3174 consensus F-actin capping protein, beta subunit [Cytoskeleton]
Probab=45.86 E-value=20 Score=28.72 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=19.0
Q ss_pred ecCCceEEEEecCC-CCceeEEEeeecc
Q 033860 41 RVPGIESVYEWKGE-TDAEELLIIKTRQ 67 (110)
Q Consensus 41 i~~~v~S~Y~W~G~-~~~E~~l~~KT~~ 67 (110)
+.++|.|+|.|+-. .+-+-.++||-..
T Consensus 112 ~egGvssVylwdld~~gfag~vlikK~~ 139 (275)
T KOG3174|consen 112 YEGGVSSVYLWDLDFGGFAGVVLIKKAG 139 (275)
T ss_pred eecCcceEEEEeccCCCcccceEEeecc
Confidence 45679999999988 6555555555433
No 32
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=43.64 E-value=90 Score=22.64 Aligned_cols=73 Identities=29% Similarity=0.364 Sum_probs=49.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeeccchHHHHHHHHHHh--------
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTRQSLLETLTEHVKAN-------- 80 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~~~~~~~l~~~I~~~-------- 80 (110)
+---+=++++.+.|++.|..- -+...++-+.|..+.. -+.. |-+|...+.-++=.++|..+
T Consensus 25 FG~GFY~T~~~~qA~~wA~~~--------~~~~~~~v~~Y~~~~~~~~~~--l~~k~F~~~~~eWl~fV~~nR~~~~~~~ 94 (154)
T PF13151_consen 25 FGKGFYLTTDKEQAKRWAKRK--------RNGGDPIVNVYEFDEDGLDSD--LKIKIFEKYDEEWLDFVVNNRKGKDSYP 94 (154)
T ss_pred cCceeEcccCHHHHHHHHHhc--------ccCCCCEEEEEEEeccccccc--ccccccCcchHHHHHHHHHhcCCCCCCC
Confidence 334445567799999998876 4455668889999887 4333 77777776666666666643
Q ss_pred -CCCccceEEEEeCCC
Q 033860 81 -HEYDVPEVIALPITG 95 (110)
Q Consensus 81 -HpYevPeIi~~~i~~ 95 (110)
|.|| ||.=|+.+
T Consensus 95 ~~~yD---iV~GpiAD 107 (154)
T PF13151_consen 95 YHDYD---IVIGPIAD 107 (154)
T ss_pred CCCCC---EEEecccC
Confidence 7777 45555554
No 33
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=42.42 E-value=26 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033860 17 VPNKEAGKKLAESIVKAKLAACV 39 (110)
Q Consensus 17 ~p~~e~A~~ia~~lve~rLaACv 39 (110)
..++++|-+|++.|+++++.-.|
T Consensus 51 ~~tR~~Av~l~q~Ll~~gvi~~V 73 (95)
T cd04446 51 DVPRAKAVRLCQALMDCRVFEAV 73 (95)
T ss_pred cCCHHHHHHHHHHHHHcCCeeec
Confidence 34899999999999999998877
No 34
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=41.52 E-value=14 Score=23.90 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccceEEEEeCCCCC
Q 033860 73 LTEHVKANHEYDVPEVIALPITGGS 97 (110)
Q Consensus 73 l~~~I~~~HpYevPeIi~~~i~~~~ 97 (110)
+.+.+...|||+.|+=-++.+...+
T Consensus 27 ~~~~~~~~hrY~eP~G~AVKV~~~~ 51 (71)
T PF14004_consen 27 VSDEYEPYHRYDEPEGSAVKVFQME 51 (71)
T ss_pred HHHHhccCCCCCCCCCceEeeeccC
Confidence 4567889999999998777776554
No 35
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=39.31 E-value=27 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.6
Q ss_pred eCCCHHHHHHHHHHHHhcccc
Q 033860 16 TVPNKEAGKKLAESIVKAKLA 36 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLa 36 (110)
++++.+.|++++..||.+|+-
T Consensus 49 ~~~~~~~A~k~~~Klv~eK~~ 69 (77)
T cd07998 49 APVTLEAAEKIFDKLVKSKTN 69 (77)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 346899999999999998863
No 36
>PF14280 DUF4365: Domain of unknown function (DUF4365)
Probab=39.05 E-value=61 Score=21.92 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=30.5
Q ss_pred cCC-CCceeEEEeeeccchHHH---------H-HHHHHHhCCCccceEEEEeCCCCCHhH
Q 033860 52 KGE-TDAEELLIIKTRQSLLET---------L-TEHVKANHEYDVPEVIALPITGGSQPY 100 (110)
Q Consensus 52 ~G~-~~~E~~l~~KT~~~~~~~---------l-~~~I~~~HpYevPeIi~~~i~~~~~~Y 100 (110)
+|+ ...-+.+.+|++.+.+.. + .+.+.-...+.+|.|+++--......|
T Consensus 39 ~g~~tg~~i~VQlK~t~~~~~~~~~~~~~~~~~~~~l~y~~~~~~PvilV~~~~~~~~~y 98 (138)
T PF14280_consen 39 DGKPTGRRIAVQLKSTESYFYENDDGSFSFPLDKEHLNYWLNHPVPVILVLVDPDSDCAY 98 (138)
T ss_pred CCcccCCEEEEEEcccCcccccCCCceEEEeeCHHHHHHHhcCCCCEEEEEEeCCCCEEE
Confidence 555 677889999999987620 1 333333334667888885444444455
No 37
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=38.99 E-value=88 Score=20.22 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=22.4
Q ss_pred EEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033860 14 YVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (110)
Q Consensus 14 ~tT~p~~e~A~~ia~~lve~rLaACvni~~ 43 (110)
..+.| .+.|++.+..+++..+=+.+|+.|
T Consensus 67 ii~VP-~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 67 IITVP-AEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp EEES--HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred EEEcC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34556 466999999999999999999876
No 38
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=38.60 E-value=66 Score=20.08 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=27.5
Q ss_pred CceeEEEeeeccchHHHHHHHHHHhCCCccceEEEE
Q 033860 56 DAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 91 (110)
Q Consensus 56 ~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~ 91 (110)
..+..+++||.+..-..+...|-+. ..|+|++.
T Consensus 11 ~~~~~vvikt~pG~A~~va~~iD~~---~~~~I~Gt 43 (70)
T PF02863_consen 11 RSDNMVVIKTLPGNAQAVAAAIDQL---NLPEIFGT 43 (70)
T ss_dssp EESSEEEEEESTTCHHHHHHHHHHH---CGTTEEEE
T ss_pred ccCCEEEEEeCCCcHHHHHHHHHhc---CCcccEEE
Confidence 3567899999999999999999988 47777654
No 39
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=37.89 E-value=40 Score=29.53 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHhCCCccceEEEEeCCCCCH
Q 033860 66 RQSLLETLTEHVKANHEYDVPEVIALPITGGSQ 98 (110)
Q Consensus 66 ~~~~~~~l~~~I~~~HpYevPeIi~~~i~~~~~ 98 (110)
-...++.+.+.- +.|-|++|+||.+.+...+.
T Consensus 459 w~T~~e~i~~~f-~~aGY~~P~iVFWNl~~~~~ 490 (534)
T PF11443_consen 459 WETNFEAIKRKF-EEAGYELPEIVFWNLRGRSS 490 (534)
T ss_pred cccHHHHHHHHH-HHhCCCCCceEEeecCCCCC
Confidence 356677887776 67999999999999876554
No 40
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=36.29 E-value=31 Score=19.54 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=7.5
Q ss_pred ceEEEEecC
Q 033860 45 IESVYEWKG 53 (110)
Q Consensus 45 v~S~Y~W~G 53 (110)
-..+|+|+|
T Consensus 36 ~s~Iy~Wd~ 44 (44)
T PF03736_consen 36 DSQIYRWDG 44 (44)
T ss_pred CCEEEEeCC
Confidence 567999987
No 41
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=34.81 E-value=77 Score=25.76 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=25.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEe
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvn 40 (110)
.+++.=..|+.++|.+|++.+.++++..+..
T Consensus 130 va~ivG~a~~~e~~~~I~~e~q~r~~lv~l~ 160 (287)
T cd01917 130 EAVILGRAKDSKALKKIVDDLMGRGFMLFLC 160 (287)
T ss_pred EEEEEecCCChHHHHHHHHHHHHCCcEEEEe
Confidence 3455555668899999999999999988764
No 42
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=34.43 E-value=47 Score=20.48 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEeCCCHHHHHHHHHHHHhccc
Q 033860 14 YVTVPNKEAGKKLAESIVKAKL 35 (110)
Q Consensus 14 ~tT~p~~e~A~~ia~~lve~rL 35 (110)
...++|.++|.+....++.+|+
T Consensus 46 ~~~~~s~~~A~~~~~k~~~~K~ 67 (74)
T cd07996 46 TKTFDSEEEALKAAEKLIREKL 67 (74)
T ss_pred EEECCCHHHHHHHHHHHHHHHH
Confidence 4668999999999999998875
No 43
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=33.79 E-value=40 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=16.7
Q ss_pred cCCceEEEEecCC-C-CceeEEEeeec
Q 033860 42 VPGIESVYEWKGE-T-DAEELLIIKTR 66 (110)
Q Consensus 42 ~~~v~S~Y~W~G~-~-~~E~~l~~KT~ 66 (110)
-++|.|+|.|+-. + +-=-.++||-.
T Consensus 114 eGGvSSVYlWd~d~~~gFag~vLiKK~ 140 (242)
T PF01115_consen 114 EGGVSSVYLWDLDDDDGFAGVVLIKKE 140 (242)
T ss_dssp SSSEEEEEEEEETT--EEEEEEEEEEE
T ss_pred CCCeeEEEEEecCCCcceeEEEEEEec
Confidence 3579999999987 3 44445666644
No 44
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=33.78 E-value=46 Score=24.60 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=33.1
Q ss_pred ceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHhCCC
Q 033860 45 IESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEY 83 (110)
Q Consensus 45 v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpY 83 (110)
+.....+..+++.|..+++-......+++.=.|.+.||+
T Consensus 67 ~~~~~~~~~~tG~E~~~~v~~~a~~vK~~~i~iEe~hpl 105 (165)
T TIGR03124 67 ILVQQALNEATGPEAFLVVDAPALELKRLMIKLEESHPL 105 (165)
T ss_pred eeeeeeccCCCCcEEEEEeCCCHHHHHHHHHHHHhCCch
Confidence 344455655699999999999999999999999999996
No 45
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=31.83 E-value=95 Score=24.15 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=28.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~ 43 (110)
.-+...|+|. +.|+.+|..||+.+.=+--|..|
T Consensus 147 v~iaiLtVPa-~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 147 VEIAILTVPA-EHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred ccEEEEEccH-HHHHHHHHHHHHcCCceEEeccc
Confidence 3466778884 78999999999999999999887
No 46
>PRK11178 uridine phosphorylase; Provisional
Probab=30.65 E-value=1e+02 Score=23.81 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=41.5
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeeccchHHHHHHHHHHhCCCccceEEEE
Q 033860 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 91 (110)
Q Consensus 13 v~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~ 91 (110)
+.+.+++.++++.|++.|-..+. ++ ....+..|.|. .+.++.+ +.|--.+...-. .+.++.-+..=.||.+
T Consensus 19 i~Ii~g~p~e~~~ia~~l~~~~~---~~---~~~~~~~~~G~~~g~~v~v-~~~GiG~~~Aa~-~~~eLi~~g~~~iI~~ 90 (251)
T PRK11178 19 LAIVPGDPERVEKIAALMDNPVF---LA---SHREFTSWRAELDGKPVIV-CSTGIGGPSTSI-AVEELAQLGVRTFLRI 90 (251)
T ss_pred EEEECCCHHHHHHHHHHhccchh---ee---eccCeEEEEEEEcCEEEEE-EecCCCHHHHHH-HHHHHHHcCCCEEEEE
Confidence 56788999999999986644332 11 24667788898 7766544 455444332222 2333433444445544
Q ss_pred e
Q 033860 92 P 92 (110)
Q Consensus 92 ~ 92 (110)
=
T Consensus 91 G 91 (251)
T PRK11178 91 G 91 (251)
T ss_pred e
Confidence 3
No 47
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.21 E-value=2.7e+02 Score=21.84 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=40.2
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeee
Q 033860 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKT 65 (110)
Q Consensus 13 v~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT 65 (110)
++....+.+-|++||+.|=-+..-...+.||.-++..+=++. .++.+ +++-+
T Consensus 2 i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v-~i~~~ 54 (285)
T PRK00934 2 IIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDV-VIIST 54 (285)
T ss_pred eEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEE-EEEeC
Confidence 344567788999999998666777788899999988888877 77777 44444
No 48
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=30.20 E-value=28 Score=18.69 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=10.2
Q ss_pred eecCCceEEEEec
Q 033860 40 NRVPGIESVYEWK 52 (110)
Q Consensus 40 ni~~~v~S~Y~W~ 52 (110)
..+|+=.|+|.|+
T Consensus 9 ~~fP~D~S~y~WD 21 (28)
T PF08076_consen 9 HHFPSDKSIYHWD 21 (28)
T ss_pred ccCCCccceeehh
Confidence 3467778999997
No 49
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=29.97 E-value=79 Score=23.82 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHhcccc
Q 033860 5 SKTVPSIVVYVTVPNKEAGKKLAESIVKAKLA 36 (110)
Q Consensus 5 ~~~~~~~lv~tT~p~~e~A~~ia~~lve~rLa 36 (110)
.++.+.+++++..++.++|.++|+.|.++..-
T Consensus 79 lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~ 110 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEAVALAKQLIEQGIP 110 (172)
T ss_dssp --TT-EEEEEES-S--HHHHHHHHHHHHHT--
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 34556899999999999999999999998863
No 50
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=29.09 E-value=1.2e+02 Score=20.61 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeecCCceEEEEec
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWK 52 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~ 52 (110)
--.+.++.+.+|..|-++-=|.+||+++.+--+|+=.
T Consensus 52 ~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~~~vlYR~~ 88 (97)
T PRK10343 52 ATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88 (97)
T ss_pred cCCChhHHHHHHHHHHHHHCCEEEeeeCcEEEEEecC
Confidence 3456778888999999999999999999888888754
No 51
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=28.63 E-value=65 Score=22.37 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.1
Q ss_pred eCCCHHHHHHHHHHHHhccc
Q 033860 16 TVPNKEAGKKLAESIVKAKL 35 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rL 35 (110)
...|.|.|.+|||.-+-++|
T Consensus 79 nAes~EHA~RIAKs~iGkaL 98 (102)
T PF04475_consen 79 NAESEEHAERIAKSEIGKAL 98 (102)
T ss_pred ecCCHHHHHHHHHHHHhHHh
Confidence 46789999999999887776
No 52
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=28.61 E-value=1.5e+02 Score=21.06 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.5
Q ss_pred EEEeeeccchHHHHHHHHHHhCCCccceEEEEeCCCCCHhHHHHHH
Q 033860 60 LLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLK 105 (110)
Q Consensus 60 ~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~~i~~~~~~Yl~Wi~ 105 (110)
..++|..+++..++.+...+. +++.+.+.........|.++..
T Consensus 56 ipIL~a~~~~L~~l~~~a~~~---~i~~~~F~~~aq~~~~y~e~~~ 98 (133)
T PF09391_consen 56 IPILKANSEQLRELRQKALER---EITVVDFTDEAQSTGHYEEYRA 98 (133)
T ss_dssp EEEEEE-HHHHHHHHHHHHHT---T---EEEEGGGGG---HHHHHH
T ss_pred eEEEEcCHHHHHHHHHHHHHC---CCeEEeChHHHhhCCCHHHHHH
Confidence 578889999999998888887 9999999988888888888854
No 53
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.96 E-value=3.2e+02 Score=22.02 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEeeec
Q 033860 8 VPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIKTR 66 (110)
Q Consensus 8 ~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~KT~ 66 (110)
+.-.+++....+.+-|++||+.|=-+---.+...||.-++..+=... .++.+ +++.|.
T Consensus 7 ~~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV-~ii~s~ 65 (323)
T PRK02458 7 DKQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDI-YIIQST 65 (323)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeE-EEEecC
Confidence 33467778888899999999988655556677788888888887777 66665 555654
No 54
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=27.69 E-value=2.8e+02 Score=21.22 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHhCCCccceEEEEeCCCCCH
Q 033860 19 NKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQ 98 (110)
Q Consensus 19 ~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~~i~~~~~ 98 (110)
++-|.+.|.+.+.+.+..+++++...-..+|+==+.... ....++.+.+.+.|.|.+-.... ...+.
T Consensus 147 SEpEtral~~~~~~~~~~~~i~~Hs~g~~i~~~~~~~~~----------~~~~~~~~~~~~~~gy~~~~~~~---~~~~G 213 (255)
T cd06229 147 SEPETIALAELTRENRFRAVLAYHSQGEEIYWGYGGLEP----------PESQKMAELLAEVSGYELVDSES---KRSYG 213 (255)
T ss_pred CchhHHHHHHHHHhCCCeEEEEecCCCCeEEecCCCCCc----------hHHHHHHHHHhhccCCccccccc---cCCCC
Confidence 566899999999999999999888776667631122221 45578999999999997654333 23345
Q ss_pred hHHHHHHhh
Q 033860 99 PYLEWLKSS 107 (110)
Q Consensus 99 ~Yl~Wi~~~ 107 (110)
.+.+|..+.
T Consensus 214 ~~~Dw~~~~ 222 (255)
T cd06229 214 GYKDWFIQK 222 (255)
T ss_pred CHHHHHHhh
Confidence 677887654
No 55
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=26.73 E-value=92 Score=18.36 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEeeeccch--HHHHHHHHHHhCCCccceEEEEeCCCCCHh
Q 033860 61 LIIKTRQSL--LETLTEHVKANHEYDVPEVIALPITGGSQP 99 (110)
Q Consensus 61 l~~KT~~~~--~~~l~~~I~~~HpYevPeIi~~~i~~~~~~ 99 (110)
+.+++.... ++++.+.+++ .|+|...-...|..+
T Consensus 1 V~V~~~~~~~~~~~~~~~l~~-----~p~V~~~~~vtG~~d 36 (74)
T PF01037_consen 1 VLVKVEPGHDAYDEFAEALAE-----IPEVVECYSVTGEYD 36 (74)
T ss_dssp EEEEESTTGTHHHHHHHHHHT-----STTEEEEEEESSSSS
T ss_pred CEEEEcCCCchHHHHHHHHHc-----CCCEEEEEEEeCCCC
Confidence 356666666 7777777775 566666655555433
No 56
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=26.71 E-value=4.8e+02 Score=23.60 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=55.8
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCCCccceEE
Q 033860 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVI 89 (110)
Q Consensus 12 lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi 89 (110)
.+..|+.=.-.+++|||..+.+=..+-++.. |+ .--|..+.+=+.++++++|.+.+.+. ++-|.||
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~----------gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiII 522 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSA----------GKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIII 522 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccC----------CCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEE
Confidence 3444444456789999999877554444332 44 44567777778888899999999988 8999999
Q ss_pred EEeCCCCCHhHHHHHHhh
Q 033860 90 ALPITGGSQPYLEWLKSS 107 (110)
Q Consensus 90 ~~~i~~~~~~Yl~Wi~~~ 107 (110)
++.-..+ .+||.+.
T Consensus 523 FvN~kk~----~d~lAk~ 536 (673)
T KOG0333|consen 523 FVNTKKG----ADALAKI 536 (673)
T ss_pred EEechhh----HHHHHHH
Confidence 9885544 4555443
No 57
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=26.30 E-value=1e+02 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=29.3
Q ss_pred eeeccchHHHHHHHHHHhCCCccceEEEEeCCCCCHhHHHHHHh
Q 033860 63 IKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKS 106 (110)
Q Consensus 63 ~KT~~~~~~~l~~~I~~~HpYevPeIi~~~i~~~~~~Yl~Wi~~ 106 (110)
++..-+.++.|.+.|.+..|=+. |-..||++|.+|.+.
T Consensus 28 i~~l~~il~~l~~~i~e~PP~~~------~~RfGN~afR~w~~~ 65 (266)
T cd04087 28 IEKLVEILDQLDALIDETPPIDQ------PSRFGNKAFRTWHDK 65 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC------CcccCCHHHHHHHHH
Confidence 44455678888888888877543 789999999999764
No 58
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=26.08 E-value=3.5e+02 Score=22.31 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=41.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeE--EEeeeccchHHHHHHHHHHhCCCccce
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEEL--LIIKTRQSLLETLTEHVKANHEYDVPE 87 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~--l~~KT~~~~~~~l~~~I~~~HpYevPe 87 (110)
.-++++|-.|-.-.-.|+..|+++ +.++|.. ++---..++.+++.+.|++.||=..=+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~--------------------~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~ 62 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAE--------------------DDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIE 62 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhc--------------------cCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeE
Confidence 456777777777888888888876 1122222 222224567899999999999955444
Q ss_pred EEEEe
Q 033860 88 VIALP 92 (110)
Q Consensus 88 Ii~~~ 92 (110)
+--+-
T Consensus 63 ~~yvl 67 (341)
T KOG1478|consen 63 VTYVL 67 (341)
T ss_pred EEEEE
Confidence 43333
No 59
>PRK03922 hypothetical protein; Provisional
Probab=25.68 E-value=74 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.0
Q ss_pred EeCCCHHHHHHHHHHHHhccc
Q 033860 15 VTVPNKEAGKKLAESIVKAKL 35 (110)
Q Consensus 15 tT~p~~e~A~~ia~~lve~rL 35 (110)
....|.|.|.+|||.-+-++|
T Consensus 80 FnAes~EHA~RIAK~eIG~aL 100 (113)
T PRK03922 80 FNAESEEHASRIAKSEIGKAL 100 (113)
T ss_pred eecCCHHHHHHHHHHHHhhHH
Confidence 457889999999999988776
No 60
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=25.22 E-value=2.7e+02 Score=20.79 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=41.1
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHhCCCccc
Q 033860 16 TVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVP 86 (110)
Q Consensus 16 T~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevP 86 (110)
.-=+.+.|++|.+.+=+.+|=.=++|. +.++++.=|...++ .++.+.+++. .|++|
T Consensus 98 ~GI~~e~AKkIvK~IKd~klKVqa~IQ-------------Gd~vRVtgKkrDDL-Q~viallk~~-d~~~p 153 (161)
T PRK05412 98 QGIDQELAKKIVKLIKDSKLKVQAQIQ-------------GDQVRVTGKKRDDL-QAVIALLRKA-DLGQP 153 (161)
T ss_pred hccCHHHHHHHHHHHHhcCCceeEEec-------------CcEEEEecCCHhHH-HHHHHHHHhc-cCCCC
Confidence 334678899999999999998666664 46777777776554 6677777755 57666
No 61
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.98 E-value=77 Score=22.32 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.6
Q ss_pred EeCCCHHHHHHHHHHHHhcccc
Q 033860 15 VTVPNKEAGKKLAESIVKAKLA 36 (110)
Q Consensus 15 tT~p~~e~A~~ia~~lve~rLa 36 (110)
....|.|.|.+||++-+-++|.
T Consensus 80 FNaes~EHA~RIAK~eIGk~L~ 101 (115)
T COG1885 80 FNAESDEHAERIAKAEIGKALK 101 (115)
T ss_pred ecCCCHHHHHHHHHHHHhhHhh
Confidence 4567889999999999988874
No 62
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.54 E-value=3.7e+02 Score=21.48 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=39.4
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEee
Q 033860 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIK 64 (110)
Q Consensus 12 lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~K 64 (110)
.++....+.+-|++||+.|=-.---+....||.-+...+=... .++++.++--
T Consensus 2 ~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s 55 (309)
T PRK01259 2 KLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQS 55 (309)
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECC
Confidence 3556677889999999987555556777888888888888777 7777655543
No 63
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=23.68 E-value=2.9e+02 Score=20.58 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=36.5
Q ss_pred EeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHhCCCccc
Q 033860 15 VTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVP 86 (110)
Q Consensus 15 tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevP 86 (110)
-.-=+.+.|++|.+.+=+.+|=.=++|. +.++++.=|...++ .++.+.+++. .|++|
T Consensus 97 k~GI~~d~AKkIvK~IKd~klKVqa~IQ-------------gd~vRVtgKkrDDL-Q~viallk~~-d~~~p 153 (160)
T PF04461_consen 97 KQGIDQDTAKKIVKLIKDSKLKVQAQIQ-------------GDQVRVTGKKRDDL-QEVIALLKEQ-DLGIP 153 (160)
T ss_dssp --S--HHHHHHHHHHHHHH--SEEEEEE-------------TTEEEEEES-HHHH-HHHHHHHHHS---SS-
T ss_pred ecccCHHHHHHHHHHHHhcCCceeEEec-------------CcEEEEecCCHHHH-HHHHHHHHcc-cCCCC
Confidence 3344678999999999999998777665 46888888887664 6677777765 67776
No 64
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=23.28 E-value=1.4e+02 Score=27.31 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEe
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVN 40 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvn 40 (110)
.+++.=..||.++|.+|++.+.++++..+..
T Consensus 138 vaaIvG~apd~e~a~~Ia~Elq~r~~lvfl~ 168 (711)
T PRK09529 138 FAVIVGAAPDSEKAKKIIKELQKKNLLTFLC 168 (711)
T ss_pred EEEEEecCCChHHHHHHHHHHHHCCcEEEEc
Confidence 4555556689999999999999999998875
No 65
>PRK00441 argR arginine repressor; Provisional
Probab=23.26 E-value=1.5e+02 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=26.2
Q ss_pred CCceeEEEeeeccchHHHHHHHHHHhCCCccceEEEE
Q 033860 55 TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 91 (110)
Q Consensus 55 ~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~ 91 (110)
+-.+..+++||.+.....+...|-+. ..|+|++.
T Consensus 87 ~~~~~lvvIkT~pG~A~~va~~iD~~---~~~eI~GT 120 (149)
T PRK00441 87 ENVDNMIVIKTISGSASAAAEAIDTL---NFDGIAGT 120 (149)
T ss_pred eecCCEEEEEeCCCcHHHHHHHHHhC---CCCCeEEE
Confidence 45688999999999988888777755 34777654
No 66
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.19 E-value=1.7e+02 Score=19.08 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=25.4
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCC
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPG 44 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~ 44 (110)
..+|++.++|.+..++|.+..-+.|.-.++-=.|+
T Consensus 61 ~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 61 ADLVFAATDDPELNEAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp ESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CC
T ss_pred heEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcC
Confidence 46888999999999999999987777766644443
No 67
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=23.08 E-value=3.9e+02 Score=21.27 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEee---eccchHHHHHHHHHH--hCCCccceEEEEeC
Q 033860 20 KEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIK---TRQSLLETLTEHVKA--NHEYDVPEVIALPI 93 (110)
Q Consensus 20 ~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~K---T~~~~~~~l~~~I~~--~HpYevPeIi~~~i 93 (110)
....+.+.++|. |=+=|+-+ -.|+|. .+.|-++.=. |+.-.|..+.+.|++ ...-+-|.|+.+..
T Consensus 29 ~ss~e~y~~aL~--~GcRcvEl-------D~Wdg~~~~~eP~V~HG~tlts~i~f~~v~~aIk~~AF~~s~yPvIlslE~ 99 (257)
T cd08591 29 KSSVEMYRQVLL--SGCRCIEL-------DCWDGKGEDEEPIITHGKTMCTEILFKDVIEAIAETAFKTSEYPVILSFEN 99 (257)
T ss_pred cccHHHHHHHHH--hCCcEEEE-------EeecCCCCCCCCEEeeCCCCccCeEHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 455778888885 33444443 369998 5566555433 677789999999996 67777899999985
Q ss_pred CCCCHh
Q 033860 94 TGGSQP 99 (110)
Q Consensus 94 ~~~~~~ 99 (110)
.. +.+
T Consensus 100 Hc-s~~ 104 (257)
T cd08591 100 HC-SSK 104 (257)
T ss_pred CC-CHH
Confidence 54 443
No 68
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=23.05 E-value=1.5e+02 Score=21.15 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCceeEEEeeeccchHHHHHHHHHHhCCCccceEEEE
Q 033860 55 TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 91 (110)
Q Consensus 55 ~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~ 91 (110)
+..|..+++||.+.....+...|-+... |+|++.
T Consensus 85 ~~~~~~vvikT~pG~A~~va~~iD~~~~---~~i~Gt 118 (146)
T TIGR01529 85 DRAGNLIVIRTKPGEASVIANLLDRLDK---DEILGT 118 (146)
T ss_pred eccCCEEEEEeCCCcHHHHHHHHHhCCC---CceEEE
Confidence 4578899999999998888887776643 777654
No 69
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=22.73 E-value=3.4e+02 Score=21.49 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEee---eccchHHHHHHHHHH--hCCCccceEEEEeC
Q 033860 20 KEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIK---TRQSLLETLTEHVKA--NHEYDVPEVIALPI 93 (110)
Q Consensus 20 ~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~K---T~~~~~~~l~~~I~~--~HpYevPeIi~~~i 93 (110)
....+.+.++|. |=+=|+-+ -.|+|. .+.|-++.=. |+.-.|..+.+.|++ ...=+-|.|+.+.+
T Consensus 29 ~ss~e~y~~aL~--~GcRcvEl-------D~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~ 99 (258)
T cd08625 29 LSSVEMYRQVLL--TGCRCIEL-------DCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFEN 99 (258)
T ss_pred ccCHHHHHHHHH--cCCCEEEE-------EecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehh
Confidence 344777888884 33445544 369998 6667555433 677789999999995 44445699999997
Q ss_pred CCCCH----hHHHHHHhhc
Q 033860 94 TGGSQ----PYLEWLKSST 108 (110)
Q Consensus 94 ~~~~~----~Yl~Wi~~~~ 108 (110)
...+. .-.+|+.+..
T Consensus 100 Hc~s~~qQ~~ma~~l~~il 118 (258)
T cd08625 100 HVDSAKQQAKMAEYCRSIF 118 (258)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 76332 4566666543
No 70
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=22.61 E-value=67 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=26.1
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033860 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (110)
Q Consensus 13 v~tT~p~~e~A~~ia~~lve~rLaACvni~~ 43 (110)
++.+..|+++|++++..|++++++-=|+-.+
T Consensus 46 ~lp~i~~r~da~~~~~~Li~~~l~~R~~k~~ 76 (232)
T TIGR00869 46 IYPTIPSRLEAIEIFILLIKNQMVIRVDKLP 76 (232)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3457888999999999999999987776655
No 71
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=22.28 E-value=86 Score=19.77 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=19.7
Q ss_pred EEEeCCCHHHHHHHHHHHHhccc
Q 033860 13 VYVTVPNKEAGKKLAESIVKAKL 35 (110)
Q Consensus 13 v~tT~p~~e~A~~ia~~lve~rL 35 (110)
-...++|.++|......++.+|+
T Consensus 48 ~~~~f~s~~eA~~~f~~~~~~K~ 70 (81)
T PF05406_consen 48 RIKPFDSEEEAIKEFEKLFKEKT 70 (81)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH
Confidence 44588999999999999998875
No 72
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=22.23 E-value=1.4e+02 Score=23.63 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=27.3
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033860 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (110)
Q Consensus 12 lv~tT~p~~e~A~~ia~~lve~rLaACvni~~ 43 (110)
-+.+.+.|..-|+.||+.|.+.+.+++.+-..
T Consensus 32 ~~vi~~GDP~Ra~~iA~~l~~~~~~~~~~~~r 63 (287)
T TIGR01719 32 KFVCMGGTPSRMKAFARYVGAELGLSCGRDYP 63 (287)
T ss_pred CEEEeCCCHHHHHHHHHHHhhhhcccccccce
Confidence 56778999999999999999999999976544
No 73
>PHA00540 hypothetical protein
Probab=21.80 E-value=61 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=14.8
Q ss_pred CceEEEEecCCCCceeEEEeee
Q 033860 44 GIESVYEWKGETDAEELLIIKT 65 (110)
Q Consensus 44 ~v~S~Y~W~G~~~~E~~l~~KT 65 (110)
.+.|+|||+|..+++..-+=|-
T Consensus 238 s~k~lYRWdG~gEPq~PtIdkn 259 (715)
T PHA00540 238 SIKGFYRWDGDGEPQTPTIDKN 259 (715)
T ss_pred ceeEEEEecCCCCCCCceeCCC
Confidence 4789999999855554444443
No 74
>PRK05783 hypothetical protein; Provisional
Probab=21.57 E-value=1.8e+02 Score=19.18 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhc-ccc
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKA-KLA 36 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~-rLa 36 (110)
++.+....+|.++|++-++.+=++ |||
T Consensus 43 ~iel~l~~~~~e~a~~~v~~mc~~LrLa 70 (84)
T PRK05783 43 YLVFKIEANSPEEAKELALKIAREGRLY 70 (84)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHhcCcC
Confidence 466777888999999888888766 465
No 75
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=21.45 E-value=1.9e+02 Score=21.39 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.0
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHh
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVK 32 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve 32 (110)
.+-|-.+.+|.+.|.+||.++++
T Consensus 120 ii~Isv~~~dp~~A~~ian~~~~ 142 (226)
T TIGR01006 120 LISISVKDKTPQDASKIANSLRE 142 (226)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHH
Confidence 57789999999999999999987
No 76
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=21.35 E-value=2e+02 Score=17.21 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCceeEEEeeeccchHHHHHHHHHH-hCCCccc
Q 033860 55 TDAEELLIIKTRQSLLETLTEHVKA-NHEYDVP 86 (110)
Q Consensus 55 ~~~E~~l~~KT~~~~~~~l~~~I~~-~HpYevP 86 (110)
.++...+.+.. .-++|.+.+++ +.+|.+|
T Consensus 25 ~g~~l~a~vv~---~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 25 WGERLVAFVVL---DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp TEEEEEEEEEE---HHHHHHHHHHHHS-GGGS-
T ss_pred ccccceeEEEe---eecccccchhhhCCCccee
Confidence 44555555555 33888888886 8999999
No 77
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.30 E-value=3.3e+02 Score=21.14 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=31.2
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeEEEeeeccchHHHHHHHHHHh
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKAN 80 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~l~~KT~~~~~~~l~~~I~~~ 80 (110)
.++|+-=+ .++++||+.|.+.+.-..+++.....+ ....-..+...-. +..+.+.++|++.
T Consensus 4 ~IlvlgGT---~egr~la~~L~~~g~~v~~Svat~~g~------~~~~~~~v~~G~l-~~~~~l~~~l~~~ 64 (248)
T PRK08057 4 RILLLGGT---SEARALARALAAAGVDIVLSLAGRTGG------PADLPGPVRVGGF-GGAEGLAAYLREE 64 (248)
T ss_pred eEEEEech---HHHHHHHHHHHhCCCeEEEEEccCCCC------cccCCceEEECCC-CCHHHHHHHHHHC
Confidence 45555433 459999999988855444433322111 1111112222221 1348888888854
No 78
>PRK04280 arginine repressor; Provisional
Probab=21.25 E-value=1.6e+02 Score=21.27 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCceeEEEeeeccchHHHHHHHHHHhCCCccceEEEE
Q 033860 55 TDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 91 (110)
Q Consensus 55 ~~~E~~l~~KT~~~~~~~l~~~I~~~HpYevPeIi~~ 91 (110)
+-.|..+++||.+.....+...|-+.+ .|+|++.
T Consensus 87 ~~~~~~vvikT~pG~A~~va~~iD~~~---~~eI~GT 120 (148)
T PRK04280 87 DGAGNLLVLKTLPGNANSIGALIDNLD---WDEILGT 120 (148)
T ss_pred eeeCCEEEEEcCCChHHHHHHHHHhCC---CCCeEEE
Confidence 447889999999999888888887664 4677654
No 79
>PRK11538 ribosome-associated protein; Provisional
Probab=20.40 E-value=2.1e+02 Score=19.48 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=30.2
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCCCCceeEEE
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLI 62 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~~~~E~~l~ 62 (110)
-.+|++|..|.-..+.||..+.++ +-.. ++.| +.=+|..+.+|.|+
T Consensus 35 Dy~VIatg~S~rh~~aia~~v~~~-~k~~-~~~~-----~~~eG~~~~~Will 80 (105)
T PRK11538 35 DCMIICTGTSSRHVMSIADHVVQE-SRAA-GLLP-----LGVEGENAADWIVV 80 (105)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHH-HHHc-CCCC-----CcccCCCCCCEEEE
Confidence 478889999999999999998764 3332 3322 22345566666654
No 80
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
Probab=20.38 E-value=69 Score=25.88 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=25.0
Q ss_pred eeccchHHHHHHHHHHhCCCccceEEEEeCCCCCHhHHHHHHh
Q 033860 64 KTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKS 106 (110)
Q Consensus 64 KT~~~~~~~l~~~I~~~HpYevPeIi~~~i~~~~~~Yl~Wi~~ 106 (110)
+..-+.++.|.+.|.+..|-+- -|-..||++|..|.+.
T Consensus 52 ~~ll~iL~~l~~~i~e~PP~~~-----~p~RFGN~AfR~w~~~ 89 (299)
T PF03095_consen 52 QKLLDILDTLEQWIDEIPPVDQ-----GPSRFGNKAFRTWHDK 89 (299)
T ss_dssp HHHHHHHHHHHHHHHTS---SS------STTSS-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-----CCCCCCCHHHHHHHHH
Confidence 3345578889999999888443 1457799999999864
No 81
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=20.12 E-value=3.3e+02 Score=21.72 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccccceEeecCCceEEEEecCC-CCceeEEEee---eccchHHHHHHHHHH--hCCCccceEEEEeC
Q 033860 20 KEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE-TDAEELLIIK---TRQSLLETLTEHVKA--NHEYDVPEVIALPI 93 (110)
Q Consensus 20 ~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~-~~~E~~l~~K---T~~~~~~~l~~~I~~--~HpYevPeIi~~~i 93 (110)
...++.+.++|. |=+=|+-+ -.|+|. .+.|=++.=- |+.-.|.++.+.|++ .+.-+-|.|+.+..
T Consensus 29 ~ss~e~y~~aL~--~GcRcvEl-------D~wdG~~~~~ePiV~HG~tlts~i~f~dv~~~I~~~AF~~S~yPvIlSlE~ 99 (258)
T cd08623 29 NSSVEMYRQVLL--SGCRCVEL-------DCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFEN 99 (258)
T ss_pred ccCHHHHHHHHH--cCCCEEEE-------EeeCCCCCCCCCEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEehh
Confidence 445778888884 33334443 369998 5566554433 677788999999985 56777899999997
Q ss_pred CCCCHh
Q 033860 94 TGGSQP 99 (110)
Q Consensus 94 ~~~~~~ 99 (110)
...+.+
T Consensus 100 Hc~s~~ 105 (258)
T cd08623 100 HVDSPK 105 (258)
T ss_pred cCCCHH
Confidence 664444
No 82
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.06 E-value=1.8e+02 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccc
Q 033860 10 SIVVYVTVPNKEAGKKLAESIVKAKL 35 (110)
Q Consensus 10 ~~lv~tT~p~~e~A~~ia~~lve~rL 35 (110)
.++......+.++|..++++|++.++
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi 39 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGI 39 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 36777788899999999999988664
No 83
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=20.05 E-value=90 Score=18.34 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=11.8
Q ss_pred EEEEeCCCHHHHHHHHHHHH
Q 033860 12 VVYVTVPNKEAGKKLAESIV 31 (110)
Q Consensus 12 lv~tT~p~~e~A~~ia~~lv 31 (110)
+.+-.++|.++|+++.+.|-
T Consensus 46 V~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 46 VRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEECCECTCCHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 33345566666666666665
Done!