Query 033866
Match_columns 110
No_of_seqs 101 out of 228
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_k 60S ribosomal protein R 100.0 2E-57 6.8E-62 321.3 1.7 97 7-103 4-100 (100)
2 3iz5_k 60S ribosomal protein L 100.0 1.6E-58 5.4E-63 332.2 -4.0 105 1-105 1-105 (112)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 5.5E-55 1.9E-59 310.5 10.1 96 7-102 2-103 (104)
4 3qks_C DNA double-strand break 49.7 5.6 0.00019 22.9 0.9 13 53-65 4-16 (34)
5 3r0a_A Putative transcriptiona 37.8 25 0.00086 23.2 2.9 27 43-69 14-40 (123)
6 2oyn_A Hypothetical protein MJ 29.4 23 0.00079 25.7 1.7 18 40-57 26-43 (146)
7 3mxn_A RECQ-mediated genome in 19.2 1E+02 0.0035 22.6 3.5 50 10-60 37-95 (157)
8 2yy0_A C-MYC-binding protein; 17.5 1.1E+02 0.0036 18.4 2.7 10 72-81 3-12 (53)
9 1xu0_A Prion protein, XLPRP; a 12.6 89 0.0031 22.5 1.6 15 38-52 109-123 (130)
10 3ld1_A Replicase polyprotein 1 11.1 1.3E+02 0.0045 24.3 2.3 20 47-66 85-104 (359)
No 1
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=2e-57 Score=321.30 Aligned_cols=97 Identities=46% Similarity=0.765 Sum_probs=76.1
Q ss_pred CccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 033866 7 NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 86 (110)
Q Consensus 7 ~~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRlGth~RA 86 (110)
++||||||||||+||+|++++|||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+|||||+||
T Consensus 4 ~~~iavGlnKGhkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~RA 83 (100)
T 3izc_k 4 KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRA 83 (100)
T ss_dssp --------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCS
T ss_pred ccceeeeccCCcccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 033866 87 KKKREEMSNALRKSRAP 103 (110)
Q Consensus 87 KrK~eel~~vl~~~Rk~ 103 (110)
|+|+|||+|||++||++
T Consensus 84 KrKreel~~vl~~~Rk~ 100 (100)
T 3izc_k 84 KAKVEEMNNIIAASRRH 100 (100)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999974
No 2
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=1.6e-58 Score=332.25 Aligned_cols=105 Identities=85% Similarity=1.295 Sum_probs=68.5
Q ss_pred CCCCCCCccceeeecCCceecccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 033866 1 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (110)
Q Consensus 1 m~~~~~~~~iavGlnKGhkvtk~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~skdKrAlKf~KKRl 80 (110)
|++.++++|||||||+||+||+|++++|||+++|.+|+|++||||||+|||||||||+|+||||++|+|||||||+|+||
T Consensus 1 m~~~~~~~~iavGlnKGhkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRl 80 (112)
T 3iz5_k 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (112)
T ss_dssp -----------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCC
T ss_pred CCCCCCCCCeeeecCCCcccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 66767899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCCC
Q 033866 81 GTHKRAKKKREEMSNALRKSRAPGG 105 (110)
Q Consensus 81 Gth~RAKrK~eel~~vl~~~Rk~~~ 105 (110)
|||+|||+|+|||+|||++||++++
T Consensus 81 Gth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 81 GTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp SHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999654
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=5.5e-55 Score=310.54 Aligned_cols=96 Identities=54% Similarity=0.816 Sum_probs=94.5
Q ss_pred CccceeeecCCceec---ccCCCCCCCcccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 033866 7 NTGLFVGLNKGHIVT---KKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK---DKRALKVAKRKL 80 (110)
Q Consensus 7 ~~~iavGlnKGhkvt---k~~~~~r~s~~kg~~tkr~kfVr~vIrEV~GfAPYErr~mELlk~sk---dKrAlKf~KKRl 80 (110)
++|||||||+||+|| ++++++|||+++|.+|+|++||||||+|||||||||+|+||||++|+ |||||||+|+||
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl 81 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence 579999999999999 99999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhC
Q 033866 81 GTHKRAKKKREEMSNALRKSRA 102 (110)
Q Consensus 81 Gth~RAKrK~eel~~vl~~~Rk 102 (110)
|||+|||+|+|||+|||++||+
T Consensus 82 Gth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 82 GTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999996
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=49.73 E-value=5.6 Score=22.87 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.4
Q ss_pred cchhHHHHHHHHh
Q 033866 53 FAPYEKRITELLK 65 (110)
Q Consensus 53 fAPYErr~mELlk 65 (110)
|.|+|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=37.78 E-value=25 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHHHHhhccchhHHHHHHHHhhcch
Q 033866 43 VRTVIREVAGFAPYEKRITELLKVGKD 69 (110)
Q Consensus 43 Vr~vIrEV~GfAPYErr~mELlk~skd 69 (110)
+.+++..+.|+.|.|..++.+|-....
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~ 40 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPD 40 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 467888899999999999999875543
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=29.45 E-value=23 Score=25.73 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhccchhH
Q 033866 40 VHFVRTVIREVAGFAPYE 57 (110)
Q Consensus 40 ~kfVr~vIrEV~GfAPYE 57 (110)
..+.++-++|.+||.||.
T Consensus 26 l~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 26 LPPYKEIFKKILGFEPYE 43 (146)
T ss_dssp SHHHHHHHHHHHSSCCCS
T ss_pred CHHHHHHHHHHhCCcCCC
Confidence 355789999999999995
No 7
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=19.17 E-value=1e+02 Score=22.61 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=31.1
Q ss_pred ceeeecCCceecccCCCCCCCcccCCCCc---------hhHHHHHHHHHhhccchhHHHH
Q 033866 10 LFVGLNKGHIVTKKELPPRPADRKGKTSK---------RVHFVRTVIREVAGFAPYEKRI 60 (110)
Q Consensus 10 iavGlnKGhkvtk~~~~~r~s~~kg~~tk---------r~kfVr~vIrEV~GfAPYErr~ 60 (110)
..++-=||+.+|=. ...+.+.-.-.++- -+.|..+|+.+..||+|-|-..
T Consensus 37 ~~~~kVKafI~tl~-~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~ 95 (157)
T 3mxn_A 37 VTTVKVKAFIVTLT-GNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQ 95 (157)
T ss_dssp CEEEEEEEEEEEEC-SCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHH
T ss_pred ceEEEEEEEEEEec-cceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHH
Confidence 45566688877732 22222222222222 3469999999999999999544
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=17.52 E-value=1.1e+02 Score=18.39 Aligned_cols=10 Identities=50% Similarity=0.694 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 033866 72 ALKVAKRKLG 81 (110)
Q Consensus 72 AlKf~KKRlG 81 (110)
|+.|+|+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6677777777
No 9
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=12.63 E-value=89 Score=22.48 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHhhc
Q 033866 38 KRVHFVRTVIREVAG 52 (110)
Q Consensus 38 kr~kfVr~vIrEV~G 52 (110)
-++++++.||+|+|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999993
No 10
>3ld1_A Replicase polyprotein 1A; globular like, HOST cytoplasm, HOST membrane, membrane, META binding, protease, RNA-binding; 2.50A {Avian infectious bronchitis virus}
Probab=11.13 E-value=1.3e+02 Score=24.28 Aligned_cols=20 Identities=30% Similarity=0.775 Sum_probs=18.2
Q ss_pred HHHhhccchhHHHHHHHHhh
Q 033866 47 IREVAGFAPYEKRITELLKV 66 (110)
Q Consensus 47 IrEV~GfAPYErr~mELlk~ 66 (110)
+.++.|.+|+-++--||||.
T Consensus 85 ledifgvsp~arkyrellkt 104 (359)
T 3ld1_A 85 LEDIFGVSPFARKYRELLKT 104 (359)
T ss_dssp HHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 57889999999999999994
Done!