BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033867
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OOZ|B Chain B, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|A Chain A, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|B Chain B, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 475
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|B Chain B, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|C Chain C, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|D Chain D, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1OOY|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|1OOY|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|3K6M|A Chain A, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|D Chain D, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|C Chain C, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|B Chain B, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart
Length = 481
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
Length = 481
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|E Chain E, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|F Chain F, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|G Chain G, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|H Chain H, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
Length = 488
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|B Chain B, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|C Chain C, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|D Chain D, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|B Chain B, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|C Chain C, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|D Chain D, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 54 TGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFN 90
TG G GG P +++K SI + S PR+ +FN
Sbjct: 120 TGYGTLVQEGGSP--IKYNKDGSIAIASKPREVREFN 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,642,543
Number of Sequences: 62578
Number of extensions: 141096
Number of successful extensions: 285
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)