Query 033867
Match_columns 110
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 11:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c2i_A Methyl-CPG-binding prot 65.7 8.5 0.00029 26.6 4.2 29 29-57 42-70 (97)
2 3vxv_A Methyl-CPG-binding doma 65.2 9.8 0.00034 24.4 4.2 29 29-57 24-52 (69)
3 1whz_A Hypothetical protein; a 64.0 6.7 0.00023 23.9 3.1 37 44-83 5-42 (70)
4 2ky8_A Methyl-CPG-binding doma 61.1 14 0.00046 23.9 4.3 27 29-55 31-57 (72)
5 1dfm_A Endonuclease bglii; res 57.4 17 0.00057 28.6 5.0 40 47-107 55-94 (223)
6 1d9n_A Methyl-CPG-binding prot 55.6 13 0.00043 24.3 3.5 42 10-54 13-54 (75)
7 3d6w_A Methyl-accepting/DNA re 51.6 19 0.00064 22.8 3.8 35 31-75 29-65 (111)
8 1jb7_B Telomere-binding protei 50.3 1.3 4.4E-05 35.3 -2.4 23 36-58 99-121 (260)
9 2lqo_A Putative glutaredoxin R 50.1 11 0.00036 24.4 2.4 23 35-57 59-83 (92)
10 1ub1_A MECP2, attachment regio 48.5 24 0.00083 25.6 4.4 29 29-57 56-84 (133)
11 2ggv_A NS2B, non-structural pr 43.4 7.3 0.00025 24.7 0.8 23 8-30 33-55 (56)
12 2i0q_B Telomere-binding protei 42.7 2.1 7E-05 35.6 -2.4 23 36-58 99-121 (385)
13 3fpn_B Geobacillus stearotherm 37.8 33 0.0011 22.8 3.4 46 34-81 14-60 (106)
14 2jo8_A Serine/threonine-protei 28.0 23 0.00078 22.2 1.2 12 45-56 11-22 (51)
15 4de9_A Putative transcriptiona 27.6 28 0.00095 27.0 1.9 18 68-85 57-75 (286)
16 4g2e_A Peroxiredoxin; redox pr 26.8 94 0.0032 20.3 4.2 12 45-56 145-156 (157)
17 3zqs_A E3 ubiquitin-protein li 26.3 36 0.0012 25.6 2.3 41 46-86 3-50 (186)
18 3nxh_A Transcriptional regulat 25.1 33 0.0011 26.4 1.9 19 68-86 30-49 (269)
19 3u9h_A Tankyrase-2; protein-li 24.8 15 0.00053 27.8 0.0 18 72-89 6-23 (240)
20 3qfi_A Transcriptional regulat 24.0 35 0.0012 27.0 1.9 19 68-86 47-66 (301)
21 3okz_A Putative uncharacterize 23.4 34 0.0012 27.0 1.7 19 68-86 47-66 (306)
22 2avr_X Adhesion A; antiparalle 23.2 14 0.00049 26.5 -0.4 20 37-56 2-21 (119)
23 3a0s_A Sensor protein; PAS-fol 23.1 55 0.0019 16.8 2.1 16 2-17 3-18 (96)
24 2xxp_A CPS2A; replication, pep 22.7 38 0.0013 27.3 1.9 19 68-86 154-173 (398)
25 3owq_A LIN1025 protein; struct 22.7 38 0.0013 26.9 1.9 19 68-86 96-115 (321)
26 3ib6_A Uncharacterized protein 20.9 34 0.0012 22.8 1.1 31 33-63 51-81 (189)
27 3eab_G CHMP1B; spastin, MIT, E 20.3 41 0.0014 20.3 1.3 11 46-56 38-48 (50)
28 2rsm_A Probable peptide chain 20.1 65 0.0022 22.9 2.5 14 32-45 70-83 (115)
No 1
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=65.65 E-value=8.5 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred CcceEEEEccCCceeechHHHHHHHhhcc
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILTGLG 57 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~~LG 57 (110)
++--|..+.|+|+-+.|..+|++-|.+-|
T Consensus 42 gk~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 42 GKYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp TCEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 45689999999999999999999998765
No 2
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=65.25 E-value=9.8 Score=24.40 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=25.8
Q ss_pred CcceEEEEccCCceeechHHHHHHHhhcc
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILTGLG 57 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~~LG 57 (110)
++.-|..+.|+|+-++|..+|.+-|.+.|
T Consensus 24 gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~ 52 (69)
T 3vxv_A 24 GKFDVYFISPQGLKFRSKRSLANYLLKNG 52 (69)
T ss_dssp TCEEEEEECTTSCEECSHHHHHHHHHHHC
T ss_pred CcceEEEEcCCCCEeeCHHHHHHHHHhCC
Confidence 46688899999999999999999998865
No 3
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=63.96 E-value=6.7 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=22.7
Q ss_pred echHHHHHHHhhccceeeecCCCCceEE-eecCceeeEecc
Q 033867 44 SSYSSLEQILTGLGWERYYGGDPDLFQF-HKHSSIDLISLP 83 (110)
Q Consensus 44 ~Sy~~LE~~L~~LGWeRYy~~d~~l~Qf-Hkr~svdLISLP 83 (110)
-++..|.+.|..+||+..-.+.. =.+| |.... .+++|
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GS-H~~~~~~~~~--~~~vP 42 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGG-HRLYTHPDGR--IVVVP 42 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETT-EEEEECTTSC--EEEEE
T ss_pred CCHHHHHHHHHHCCCEEeCCCCC-CceEecCCCC--eeEec
Confidence 36889999999999984321122 2333 43333 56777
No 4
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=61.08 E-value=14 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.1
Q ss_pred CcceEEEEccCCceeechHHHHHHHhh
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILTG 55 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~~ 55 (110)
++.-|.-+.|+|+-+.|..+|++-|.+
T Consensus 31 ~k~DvyY~sP~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 31 GKSDVYYFSPSGKKFRSKPQLARYLGN 57 (72)
T ss_dssp TCEEEEEECTTCCEEESHHHHHHHHTT
T ss_pred CceEEEEECCCCCEeEcHHHHHHHHhc
Confidence 456788899999999999999999876
No 5
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=57.43 E-value=17 Score=28.57 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHhhccceeeecCCCCceEEeecCceeeEeccccccccceeeeEEEEEeCCCeeEE
Q 033867 47 SSLEQILTGLGWERYYGGDPDLFQFHKHSSIDLISLPRDFSKFNSVYMYDIVIKNPNVFHV 107 (110)
Q Consensus 47 ~~LE~~L~~LGWeRYy~~d~~l~QfHkr~svdLISLPrdF~~fks~HMYDIVVKnrn~F~V 107 (110)
+.|++.|.++||+.. |-+|..|... .|-.|.+ |||=.-||
T Consensus 55 ~~ik~~f~~~GW~e~------------------i~ip~~~~~~--~~~iDF~-K~rV~lEV 94 (223)
T 1dfm_A 55 QYIKDELVPKHWKNN------------------IPIPKRFDFL--GTDIDFG-KRDTLVEV 94 (223)
T ss_dssp HHHHHHHGGGTCEEE------------------EECCGGGGGG--CSEEEEE-ETTEEEEE
T ss_pred HHHHHHHHHcCCccc------------------cCCCcccCCc--cccceec-cccEEEEE
Confidence 378999999999943 6678777644 7888887 88876665
No 6
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=55.56 E-value=13 Score=24.33 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCEEEEeeCCCcccCCCCCCcceEEEEccCCceeechHHHHHHHh
Q 033867 10 NGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVVSSYSSLEQILT 54 (110)
Q Consensus 10 nGV~rlvenp~~~~~~~~~~rrKvLvh~ps~Evi~Sy~~LE~~L~ 54 (110)
.|--|.+---. ++.++++.-|..+.|+|+-++|..+|++-|.
T Consensus 13 ~GW~Re~~~R~---~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~ 54 (75)
T 1d9n_A 13 PGWKRREVFRK---SGATCGRSDTYYQSPTGDRIRSKVELTRYLG 54 (75)
T ss_dssp SSCEEEECSSS---SSCTTCCCCEEEECSSSCEECSTHHHHHHHC
T ss_pred CCCEEEEEEec---CCCCCCceEEEEECCCCCeeecHHHHHHHhc
Confidence 56665554321 1222346689999999999999999999995
No 7
>3d6w_A Methyl-accepting/DNA response regulator; structural genomics, APC7590, lyttr DNA-binding domain, METH accepting/DNA response regulator, PSI-2; 2.40A {Bacillus cereus}
Probab=51.59 E-value=19 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.4
Q ss_pred ceEEEEccCCceee--chHHHHHHHhhccceeeecCCCCceEEeecC
Q 033867 31 RKVLVHLPTGEVVS--SYSSLEQILTGLGWERYYGGDPDLFQFHKHS 75 (110)
Q Consensus 31 rKvLvh~ps~Evi~--Sy~~LE~~L~~LGWeRYy~~d~~l~QfHkr~ 75 (110)
+++.+|+.+++..+ +...||++|. ++..+|-|++.
T Consensus 29 ~~~~i~t~~~~~~~~~tL~~le~~L~----------~~~F~RihrS~ 65 (111)
T 3d6w_A 29 KKTYVNAEELTGTHKYSLQEFEYLLP----------KDSFIRCHRSF 65 (111)
T ss_dssp TEEEEEESSCEEEESSCHHHHHHHSC----------TTTEEEEETTE
T ss_pred CEEEEEECCCEEEhhhhHHHHHhhCC----------cCCEEEeehhh
Confidence 58999998875543 4566666663 33467778763
No 8
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B 1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Probab=50.28 E-value=1.3 Score=35.26 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred EccCCceeechHHHHHHHhhccc
Q 033867 36 HLPTGEVVSSYSSLEQILTGLGW 58 (110)
Q Consensus 36 h~ps~Evi~Sy~~LE~~L~~LGW 58 (110)
-+.|-||.|||+-||.||.-.-+
T Consensus 99 rvnsaevftsyanlearlivhsf 121 (260)
T 1jb7_B 99 RVNSAEVFTSYANLEARLIVHSF 121 (260)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEEE
T ss_pred ecchHHHhHhhhchhheeeeecc
Confidence 47899999999999999865443
No 9
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.09 E-value=11 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEccCCceeec--hHHHHHHHhhcc
Q 033867 35 VHLPTGEVVSS--YSSLEQILTGLG 57 (110)
Q Consensus 35 vh~ps~Evi~S--y~~LE~~L~~LG 57 (110)
|.++.|++++. -+.|+++|.+||
T Consensus 59 I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 59 VKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp EEETTSCEEESCCHHHHHHHHHHHH
T ss_pred EEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 45688999885 678999999886
No 10
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=48.46 E-value=24 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcceEEEEccCCceeechHHHHHHHhhcc
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILTGLG 57 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~~LG 57 (110)
++--|..+.|+|+-+.|..+|++-|.+.|
T Consensus 56 gk~DVYY~SP~GKkfRSk~Ev~ryL~~~~ 84 (133)
T 1ub1_A 56 GKYDVYLINPQGKAFRSKVELIAYFEKVG 84 (133)
T ss_dssp CSEEEEEECTTSCEESSHHHHHHHHTTSC
T ss_pred CceeEEEECCCCCeeeCHHHHHHHHHHCC
Confidence 45689999999999999999999998765
No 11
>2ggv_A NS2B, non-structural protein 2B; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus}
Probab=43.42 E-value=7.3 Score=24.71 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=11.8
Q ss_pred eeCCEEEEeeCCCcccCCCCCCc
Q 033867 8 NTNGVIRLIENPQAESQGSSSSR 30 (110)
Q Consensus 8 ~knGV~rlvenp~~~~~~~~~~r 30 (110)
|.+|=++|++.|..+.++++++|
T Consensus 33 d~~G~f~L~~ee~~~~~~~~~~~ 55 (56)
T 2ggv_A 33 DDDGNFQLMNDPGAGGGGSGGGR 55 (56)
T ss_dssp CTTSCEEETTCTTC---------
T ss_pred CCCCCEEEcccCCCCCCCCCCCC
Confidence 56899999999876655544344
No 12
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein complex, structural protein/DNA complex; 1.91A {Sterkiella nova} SCOP: b.40.4.3
Probab=42.69 E-value=2.1 Score=35.59 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred EccCCceeechHHHHHHHhhccc
Q 033867 36 HLPTGEVVSSYSSLEQILTGLGW 58 (110)
Q Consensus 36 h~ps~Evi~Sy~~LE~~L~~LGW 58 (110)
-+.|-||.|||+-||.||.-.-+
T Consensus 99 rvnsaevftsyanlearlivhsf 121 (385)
T 2i0q_B 99 RVNSAEVFTSYANLEARLIVHSF 121 (385)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEEE
T ss_pred ecchHhHhhhhhchhheeeeecc
Confidence 47899999999999999865443
No 13
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=37.80 E-value=33 Score=22.83 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred EEEccCCceeechHHHHHHHhhccceeeecCCCCceEEeec-CceeeEe
Q 033867 34 LVHLPTGEVVSSYSSLEQILTGLGWERYYGGDPDLFQFHKH-SSIDLIS 81 (110)
Q Consensus 34 Lvh~ps~Evi~Sy~~LE~~L~~LGWeRYy~~d~~l~QfHkr-~svdLIS 81 (110)
-+.+-.|+.+ +.+.|.++|.++|.+|--. ...-=||-.| +.+|+.+
T Consensus 14 ~l~l~~G~~i-~~~~l~~~L~~~GY~r~~~-v~~~Gef~vRG~iiDIfp 60 (106)
T 3fpn_B 14 VVSLRVGMEI-ERNALLRRLVDIQYDRNDI-DFRRGTFRVRGDVVEIFP 60 (106)
T ss_dssp CEEEETTCBC-CHHHHHHHHHHTTCEECTT-CCCTTEEEEETTEEEEEC
T ss_pred CeEEECCCCc-CHHHHHHHHHHcCCEECCc-cCCcEEEEEECCEEEEec
Confidence 3455667765 6899999999999999732 2233578777 6667654
No 14
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.97 E-value=23 Score=22.18 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.6
Q ss_pred chHHHHHHHhhc
Q 033867 45 SYSSLEQILTGL 56 (110)
Q Consensus 45 Sy~~LE~~L~~L 56 (110)
||+.|+++|.+|
T Consensus 11 s~eEL~~rl~~L 22 (51)
T 2jo8_A 11 TVEDLQKRLLAL 22 (51)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 899999999876
No 15
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL techoic acid synthesis, membrane prote; HET: VTP; 1.79A {Bacillus subtilis} PDB: 3mej_A*
Probab=27.55 E-value=28 Score=27.05 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=14.8
Q ss_pred ceEEeec-CceeeEecccc
Q 033867 68 LFQFHKH-SSIDLISLPRD 85 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrd 85 (110)
|+.+... ..+.+||+|||
T Consensus 57 l~~in~~~~~~~lvSIPRD 75 (286)
T 4de9_A 57 LVTFNRKEKTAKMLSIPRD 75 (286)
T ss_dssp EEEEETTTTEEEEEECCTT
T ss_pred EEEEcCCCCEEEEEEecCC
Confidence 4666664 78999999998
No 16
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=26.76 E-value=94 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.4
Q ss_pred chHHHHHHHhhc
Q 033867 45 SYSSLEQILTGL 56 (110)
Q Consensus 45 Sy~~LE~~L~~L 56 (110)
+++++++.|.+|
T Consensus 145 ~~~eil~~l~~L 156 (157)
T 4g2e_A 145 PYDEIEKVVKSL 156 (157)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 578888888776
No 17
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=26.33 E-value=36 Score=25.57 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=25.6
Q ss_pred hHHHHHHHhhccceeeecCCCCc--eEEeec---CceeeE--eccccc
Q 033867 46 YSSLEQILTGLGWERYYGGDPDL--FQFHKH---SSIDLI--SLPRDF 86 (110)
Q Consensus 46 y~~LE~~L~~LGWeRYy~~d~~l--~QfHkr---~svdLI--SLPrdF 86 (110)
|+.|=+.+.++||+|.-.-|.++ +++-.+ +-.|+| .||..+
T Consensus 3 y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~y 50 (186)
T 3zqs_A 3 YSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKY 50 (186)
T ss_dssp SCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTT
T ss_pred HHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCC
Confidence 56677788999999984324544 666443 455664 455544
No 18
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; 2.58A {Bacillus subtilis subsp}
Probab=25.08 E-value=33 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=14.1
Q ss_pred ceEEeec-CceeeEeccccc
Q 033867 68 LFQFHKH-SSIDLISLPRDF 86 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrdF 86 (110)
|+.+... ..+.+||+|||-
T Consensus 30 l~~i~~~~~~~~lvSIPRDt 49 (269)
T 3nxh_A 30 VVTLDPKNKTMKMLSIPRDT 49 (269)
T ss_dssp EEEEEGGGTEEEEEEECTTB
T ss_pred EEEEcCCCCEEEEEEecCCc
Confidence 3455544 789999999983
No 19
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=24.81 E-value=15 Score=27.80 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=0.0
Q ss_pred eecCceeeEecccccccc
Q 033867 72 HKHSSIDLISLPRDFSKF 89 (110)
Q Consensus 72 Hkr~svdLISLPrdF~~f 89 (110)
|.++++||+++|.-|..-
T Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (240)
T 3u9h_A 6 HHSSGVDLGTENLYFQSM 23 (240)
T ss_dssp ------------------
T ss_pred ccccccceeecccccchh
Confidence 456999999999988643
No 20
>3qfi_A Transcriptional regulator; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.71A {Enterococcus faecalis}
Probab=24.04 E-value=35 Score=26.98 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.1
Q ss_pred ceEEeec-CceeeEeccccc
Q 033867 68 LFQFHKH-SSIDLISLPRDF 86 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrdF 86 (110)
|+.+... ..+.|||+|||-
T Consensus 47 l~~in~~~~~i~lvSIPRDt 66 (301)
T 3qfi_A 47 VVTINPKENKSTMISLDRDI 66 (301)
T ss_dssp EEEEEGGGTEEEEEEECTTB
T ss_pred EEEEcCCCCEEEEEEecCCc
Confidence 4666654 889999999984
No 21
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=23.36 E-value=34 Score=26.96 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.9
Q ss_pred ceEEeec-CceeeEeccccc
Q 033867 68 LFQFHKH-SSIDLISLPRDF 86 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrdF 86 (110)
|+.+... ..+.+||+|||-
T Consensus 47 l~~in~~~~~~~lvSIPRDt 66 (306)
T 3okz_A 47 LVTINPKTNKTTMTSLERDV 66 (306)
T ss_dssp EEEEETTTTEEEEEEECTTB
T ss_pred EEEEcCCCCEEEEEEecCCc
Confidence 4666654 789999999984
No 22
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.21 E-value=14 Score=26.49 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=15.8
Q ss_pred ccCCceeechHHHHHHHhhc
Q 033867 37 LPTGEVVSSYSSLEQILTGL 56 (110)
Q Consensus 37 ~ps~Evi~Sy~~LE~~L~~L 56 (110)
+|+.+|++++..||.-|..|
T Consensus 2 ~~a~~V~s~l~~LEaeyq~L 21 (119)
T 2avr_X 2 TDAASLVGELQALDAEYQNL 21 (119)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 58889999999999887665
No 23
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=23.06 E-value=55 Score=16.77 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.1
Q ss_pred cceEEEeeCCEEEEee
Q 033867 2 SGVWVFNTNGVIRLIE 17 (110)
Q Consensus 2 sGVWvF~knGV~rlve 17 (110)
.|+|++|.+|-+..+.
T Consensus 3 ~~i~~~d~~g~i~~~N 18 (96)
T 3a0s_A 3 TAIITLSKDGRITEWN 18 (96)
T ss_dssp CEEEEEETTSBEEEEC
T ss_pred ceEEEEcCCCCEeehh
Confidence 3899999999887753
No 24
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=22.75 E-value=38 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=14.9
Q ss_pred ceEEeec-CceeeEeccccc
Q 033867 68 LFQFHKH-SSIDLISLPRDF 86 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrdF 86 (110)
|+.+... ..+.|+|+|||-
T Consensus 154 l~~i~~~~~~~~lvSIPRDt 173 (398)
T 2xxp_A 154 LMTVNRDTKKILLTTTPRDA 173 (398)
T ss_dssp EEEEETTTTEEEEEECCTTB
T ss_pred EEEEcCCCCeEEEEEECCcc
Confidence 4666654 889999999984
No 25
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=22.73 E-value=38 Score=26.85 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=14.8
Q ss_pred ceEEeec-CceeeEeccccc
Q 033867 68 LFQFHKH-SSIDLISLPRDF 86 (110)
Q Consensus 68 l~QfHkr-~svdLISLPrdF 86 (110)
|..+... ..+.++|+|||-
T Consensus 96 l~~in~~~~~~~lvSIPRDt 115 (321)
T 3owq_A 96 LATANKQQNAVEMVSIPRDT 115 (321)
T ss_dssp EEEEETTTTEEEEEECCTTB
T ss_pred EEEEeCCCCEEEEEEecCCc
Confidence 4566654 899999999984
No 26
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=20.91 E-value=34 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=22.5
Q ss_pred EEEEccCCceeechHHHHHHHhhccceeeec
Q 033867 33 VLVHLPTGEVVSSYSSLEQILTGLGWERYYG 63 (110)
Q Consensus 33 vLvh~ps~Evi~Sy~~LE~~L~~LGWeRYy~ 63 (110)
+-+.+-||.--+.-+.+++.|..+|+..||+
T Consensus 51 ~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd 81 (189)
T 3ib6_A 51 FKQAILSNTATSDTEVIKRVLTNFGIIDYFD 81 (189)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHTTCGGGEE
T ss_pred CEEEEEECCCccchHHHHHHHHhcCchhheE
Confidence 4445555654455588999999999988765
No 27
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.33 E-value=41 Score=20.27 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=9.8
Q ss_pred hHHHHHHHhhc
Q 033867 46 YSSLEQILTGL 56 (110)
Q Consensus 46 y~~LE~~L~~L 56 (110)
=+.|++||.+|
T Consensus 38 eD~L~~RLaaL 48 (50)
T 3eab_G 38 QDELSQRLARL 48 (50)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 68899999987
No 28
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=20.14 E-value=65 Score=22.88 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=11.7
Q ss_pred eEEEEccCCceeec
Q 033867 32 KVLVHLPTGEVVSS 45 (110)
Q Consensus 32 KvLvh~ps~Evi~S 45 (110)
=-|.|+|||=||.+
T Consensus 70 Vrl~H~PTGivV~~ 83 (115)
T 2rsm_A 70 VVLKHVPSGIVVKC 83 (115)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEecCCCCcEEEE
Confidence 45889999999876
Done!