Query 033867
Match_columns 110
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 11:53:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1edqa3 d.26.3.1 (A:444-516) C 64.2 4.9 0.00036 23.4 4.1 24 43-67 33-56 (73)
2 d1itxa2 d.26.3.1 (A:338-409) C 51.4 13 0.00093 21.5 4.4 22 43-64 32-54 (72)
3 d1jb7b_ b.40.4.3 (B:) Core dom 50.7 0.58 4.2E-05 34.6 -2.4 23 36-58 91-113 (216)
4 d1ig4a_ d.10.1.3 (A:) Methylat 50.1 12 0.00086 23.0 4.2 26 29-54 29-54 (75)
5 d1goia3 d.26.3.1 (A:292-379) C 47.0 17 0.0013 22.0 4.7 22 43-64 48-70 (88)
6 d1qk9a_ d.10.1.3 (A:) Methyl-C 47.0 10 0.00075 23.9 3.7 29 29-57 42-70 (92)
7 d2as0a1 b.122.1.9 (A:1-72) Hyp 46.8 14 0.00099 21.3 4.0 32 3-43 18-49 (72)
8 d1o6wa2 b.72.1.1 (A:30-75) Spl 44.0 16 0.0012 20.7 3.9 30 48-77 6-35 (46)
9 d1vf8a2 d.26.3.1 (A:246-315) C 42.4 13 0.00097 21.5 3.5 25 37-63 29-53 (70)
10 d1ccwa_ c.23.6.1 (A:) Glutamat 36.7 2.8 0.0002 27.5 -0.4 54 29-82 2-60 (137)
11 d2go7a1 c.108.1.6 (A:3-206) Hy 31.5 6.2 0.00045 24.6 0.6 27 33-63 99-125 (204)
12 d1tdja2 d.58.18.2 (A:336-423) 28.4 11 0.00083 23.3 1.5 44 30-74 41-85 (88)
13 d2g9na1 c.37.1.19 (A:21-238) I 26.4 12 0.00089 25.2 1.5 24 38-61 6-35 (218)
14 d1x42a1 c.108.1.1 (A:1-230) Hy 25.5 11 0.00079 24.0 1.0 28 33-63 116-143 (230)
15 d1xvwa1 c.47.1.10 (A:1-153) Pu 21.3 59 0.0043 19.6 4.0 12 45-56 140-151 (153)
No 1
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens [TaxId: 615]}
Probab=64.24 E-value=4.9 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.7
Q ss_pred eechHHHHHHHhhccceeeecCCCC
Q 033867 43 VSSYSSLEQILTGLGWERYYGGDPD 67 (110)
Q Consensus 43 i~Sy~~LE~~L~~LGWeRYy~~d~~ 67 (110)
|-+|..|.+.+..-||+++++ +..
T Consensus 33 ~~~Y~~l~~~~~~~g~~~~wD-~~a 56 (73)
T d1edqa3 33 IVDYRQIAGQFMSGEWQYTYD-ATA 56 (73)
T ss_dssp EEEHHHHHHHSSSTTCEEEEE-TTT
T ss_pred hhHHHHHHHHhccCCeeEEEe-ccc
Confidence 678999999999999999998 443
No 2
>d1itxa2 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=51.37 E-value=13 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=16.1
Q ss_pred eechHHHHHH-HhhccceeeecC
Q 033867 43 VSSYSSLEQI-LTGLGWERYYGG 64 (110)
Q Consensus 43 i~Sy~~LE~~-L~~LGWeRYy~~ 64 (110)
+.+|..|... +..-||+|||+.
T Consensus 32 ~~~Y~ei~~~~~~~~g~~~~~D~ 54 (72)
T d1itxa2 32 SFDFYDLEANYINKNGYTRYWND 54 (72)
T ss_dssp EEEHHHHHHHTTTCTTEEEEEET
T ss_pred cChHHHHHHHhccCCCCEEEEcC
Confidence 6677776554 566799999983
No 3
>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein beta subunit {Oxytricha nova [TaxId: 200597]}
Probab=50.75 E-value=0.58 Score=34.62 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.3
Q ss_pred EccCCceeechHHHHHHHhhccc
Q 033867 36 HLPTGEVVSSYSSLEQILTGLGW 58 (110)
Q Consensus 36 h~ps~Evi~Sy~~LE~~L~~LGW 58 (110)
-+.|.||.|||+-||.||.-..+
T Consensus 91 rvnsaevftsyanlearlivhsf 113 (216)
T d1jb7b_ 91 RVNSAEVFTSYANLEARLIVHSF 113 (216)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEEE
T ss_pred ecchHHHhHhhhchhheeeeecc
Confidence 47899999999999999865443
No 4
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.08 E-value=12 Score=22.98 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.9
Q ss_pred CcceEEEEccCCceeechHHHHHHHh
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILT 54 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~ 54 (110)
++.-|..+.|+|+-++|..+|++-|.
T Consensus 29 gk~DvyY~sP~Gkk~RS~~ev~~yL~ 54 (75)
T d1ig4a_ 29 GRSDTYYQSPTGDRIRSKVELTRYLG 54 (75)
T ss_dssp TCCEEEEECSSSCEECSHHHHHHHHC
T ss_pred CceeEEEECCCCCEEeCHHHHHHHhc
Confidence 35579999999999999999999984
No 5
>d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]}
Probab=47.04 E-value=17 Score=22.03 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=17.1
Q ss_pred eechHHHHH-HHhhccceeeecC
Q 033867 43 VSSYSSLEQ-ILTGLGWERYYGG 64 (110)
Q Consensus 43 i~Sy~~LE~-~L~~LGWeRYy~~ 64 (110)
|-.|-.|+. .+..-||+|||+.
T Consensus 48 ~~~y~~l~~~~~~~~Gy~~~~D~ 70 (88)
T d1goia3 48 IASYRQLEQMLQGNYGYQRLWND 70 (88)
T ss_dssp EEEHHHHHHHHHTTSSEEEEEET
T ss_pred cccHHHHHHhhccCCCcEEEeCc
Confidence 667888866 4566899999983
No 6
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.03 E-value=10 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcceEEEEccCCceeechHHHHHHHhhcc
Q 033867 29 SRRKVLVHLPTGEVVSSYSSLEQILTGLG 57 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi~Sy~~LE~~L~~LG 57 (110)
++.-|..+.|+|.-+.|..++++-|.+.|
T Consensus 42 gk~Dvyy~sP~Gkk~RS~~eV~~yL~~~~ 70 (92)
T d1qk9a_ 42 GKYDVYLINPQGKAFRSKVELIAYFEKVG 70 (92)
T ss_dssp SCCCEEEEETTTEEESSHHHHHHHHHHHT
T ss_pred ceeeEEEECCCCCeeecHHHHHHHHHHCC
Confidence 35679999999999999999999998865
No 7
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=46.82 E-value=14 Score=21.34 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceEEEeeCCEEEEeeCCCcccCCCCCCcceEEEEccCCcee
Q 033867 3 GVWVFNTNGVIRLIENPQAESQGSSSSRRKVLVHLPTGEVV 43 (110)
Q Consensus 3 GVWvF~knGV~rlvenp~~~~~~~~~~rrKvLvh~ps~Evi 43 (110)
+-|+| .+||.++..++ +++ -=|.|+-+.|+.+
T Consensus 18 ~pwi~-~~~i~~~~g~~-~~G-------d~V~v~d~~g~~l 49 (72)
T d2as0a1 18 AMIVF-KKGVVRVEGDI-KPG-------DIVEVYTRGGKFL 49 (72)
T ss_dssp CCEEE-GGGEEEEESCC-CTT-------CEEEEEETTCCEE
T ss_pred CCeEC-HhhcccccCCc-CCC-------cEEEEEeCCCcEE
Confidence 58999 99998876543 221 1577778888753
No 8
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.04 E-value=16 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHHHHhhccceeeecCCCCceEEeecCce
Q 033867 48 SLEQILTGLGWERYYGGDPDLFQFHKHSSI 77 (110)
Q Consensus 48 ~LE~~L~~LGWeRYy~~d~~l~QfHkr~sv 77 (110)
.-|+.|.+-||..+...|-..+.+|.....
T Consensus 6 ~~E~~l~~~~W~e~~~~~Gr~YYyN~~T~e 35 (46)
T d1o6wa2 6 QEELLLRENGWKAAKTADGKVYYYNPTTRE 35 (46)
T ss_dssp HHHHHHHHHTCEEEECTTCCEEEEETTTTE
T ss_pred HHHHHhccCCCeEEECCCCCEEEEECCCCC
Confidence 568999999999998756667777776443
No 9
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.36 E-value=13 Score=21.51 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=17.4
Q ss_pred ccCCceeechHHHHHHHhhccceeeec
Q 033867 37 LPTGEVVSSYSSLEQILTGLGWERYYG 63 (110)
Q Consensus 37 ~ps~Evi~Sy~~LE~~L~~LGWeRYy~ 63 (110)
+.+.. +-+|.++.+.|.+ ||.|.|+
T Consensus 29 t~~~G-~l~y~EIc~~~~~-~~~~~~D 53 (70)
T d1vf8a2 29 TDESG-LLAYYEVCTFLNE-GATEVWD 53 (70)
T ss_dssp TCCTT-EEEHHHHHHHHHT-TCEEEEE
T ss_pred cCCCC-eEeHHHHHHHHhC-CCeEEEe
Confidence 33444 4467777777765 8999887
No 10
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=36.70 E-value=2.8 Score=27.47 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=37.0
Q ss_pred CcceEEEEccCCcee-echHHHHHHHhhccceeeecC-C---CCceEEeecCceeeEec
Q 033867 29 SRRKVLVHLPTGEVV-SSYSSLEQILTGLGWERYYGG-D---PDLFQFHKHSSIDLISL 82 (110)
Q Consensus 29 ~rrKvLvh~ps~Evi-~Sy~~LE~~L~~LGWeRYy~~-d---~~l~QfHkr~svdLISL 82 (110)
.|+|||+-++.||.= -.-..++..|+..||+=+|-| + .++++.=++...|+|-|
T Consensus 2 ~k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~l 60 (137)
T d1ccwa_ 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILV 60 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCCCEEEE
Confidence 368999999988842 234578999999999988755 2 24455445555555544
No 11
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=31.51 E-value=6.2 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEccCCceeechHHHHHHHhhccceeeec
Q 033867 33 VLVHLPTGEVVSSYSSLEQILTGLGWERYYG 63 (110)
Q Consensus 33 vLvh~ps~Evi~Sy~~LE~~L~~LGWeRYy~ 63 (110)
+.+.+-||- -...+++|..+||.+|++
T Consensus 99 ~~~~v~Sn~----~~~~~~~l~~~gl~~~f~ 125 (204)
T d2go7a1 99 IQQFIYTHK----GNNAFTILKDLGVESYFT 125 (204)
T ss_dssp CEEEEECSS----CTHHHHHHHHHTCGGGEE
T ss_pred cchhhhccc----chhhhhhhhhcccccccc
Confidence 445555662 234567899999999976
No 12
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.36 E-value=11 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=32.6
Q ss_pred cceEEEEccCCceeechHHHHHHHhhccceeeecC-CCCceEEeec
Q 033867 30 RRKVLVHLPTGEVVSSYSSLEQILTGLGWERYYGG-DPDLFQFHKH 74 (110)
Q Consensus 30 rrKvLvh~ps~Evi~Sy~~LE~~L~~LGWeRYy~~-d~~l~QfHkr 74 (110)
.-+|||-+-...-....+.|.+.|.++|.+ |.+- |.++.+.|-|
T Consensus 41 ~a~VlvGi~~~~~~~e~~~l~~~L~~~Gy~-~~Dltdne~aK~HlR 85 (88)
T d1tdja2 41 NACIFVGVRLSRGLEERKEILQMLNDGGYS-VVDLSDDEMAKLHVR 85 (88)
T ss_dssp BCEEEEEEECSSTHHHHHHHHHHHTSSSCE-EETTSSCHHHHHTGG
T ss_pred CeEEEEEEEecCcchhHHHHHHHHHHCCCc-eEECcCCHHHHHHHH
Confidence 458999876554445788999999999987 4433 6777777766
No 13
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.37 E-value=12 Score=25.15 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.8
Q ss_pred cCCceeechH------HHHHHHhhccceee
Q 033867 38 PTGEVVSSYS------SLEQILTGLGWERY 61 (110)
Q Consensus 38 ps~Evi~Sy~------~LE~~L~~LGWeRY 61 (110)
+-+|.|+|++ .|-+.|.++||++=
T Consensus 6 ~~~e~i~sF~~l~L~~~l~~~L~~~g~~~p 35 (218)
T d2g9na1 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKP 35 (218)
T ss_dssp CCCCCCCCGGGSCCCHHHHHHHHHHTCCSC
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCC
Confidence 3468999998 56788899999853
No 14
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.51 E-value=11 Score=23.97 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=22.2
Q ss_pred EEEEccCCceeechHHHHHHHhhccceeeec
Q 033867 33 VLVHLPTGEVVSSYSSLEQILTGLGWERYYG 63 (110)
Q Consensus 33 vLvh~ps~Evi~Sy~~LE~~L~~LGWeRYy~ 63 (110)
+-+.+-|| ++.+.++.+|..+|+..||+
T Consensus 116 ~~i~i~Sn---~~~~~~~~~l~~~gl~~~fd 143 (230)
T d1x42a1 116 YHVGMITD---SDTEYLMAHLDALGIKDLFD 143 (230)
T ss_dssp BEEEEEES---SCHHHHHHHHHHHTCGGGCS
T ss_pred Cceeeeec---cccccchhhhcccccccccc
Confidence 45666666 47788999999999998875
No 15
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.32 E-value=59 Score=19.61 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=8.0
Q ss_pred chHHHHHHHhhc
Q 033867 45 SYSSLEQILTGL 56 (110)
Q Consensus 45 Sy~~LE~~L~~L 56 (110)
....+++.|.+|
T Consensus 140 ~~~~~~~~L~aL 151 (153)
T d1xvwa1 140 DQRLWTDALAAL 151 (153)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhh
Confidence 456677777765
Done!