Citrus Sinensis ID: 033868

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MQEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLNCLSGKDGLNNLQN
Secondary Structure (PSIPRED)
cHHHHHHHHHHccEEcccccEEEEEccHHHHHHHHHcHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccEEccccEEEEEccHHHHHHHcccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHccHHcccc
Coil and Loop (DISEMBL)
MQEAKLAKEKMhgrlacgrPLVVRLASEKYLEDAAQNSSkavgeanktgfvggtsgqmNRSAKIAAIKNKLKALEEESSsakkqkqadnsscngslnclsgkdglnnlqn
Flexible Loop (DISEMBL)
mqeaklakekmhgrlacgrPLVVRLASEKYLEDAAqnsskavgeanktgfvggtsgqmnrSAKIAAIKNKLKALEEESSsakkqkqadnsscngslnclsgkdglnnlqn
Low Complexity Region (SEG)
MQEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSakiaaiknklkalEEESSSAKKQKQADnsscngslnclsgKDGLNNLQN
Disordered region (IsUnstruct)
**************LACGRPLVVRLAS***********************************************************************************
Disordered Region (DISOPRED)
******A**KMHGRLACGRPLVVRLASEKY*********************************IAAI*******************************************
Disordered Region (DISEMBL)
***********HGRLACGRPLVVRLASEKYLE**********GEANKTGFVGGTSGQMNRSAKIAAIKNKL*********************NGSLNCLSGKDGLNNLQN
Disordered Region (DISPRO)
***AKLAKEKMHGRLACGRPLVVRLASEKYLEDA***************************AKIA****K*KA*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQADNSSCNGSLNCLSGKDGLNNLQN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
255545196	170	conserved hypothetical protein [Ricinus	0.918	0.594	0.732	2e-32
224077392	138	predicted protein [Populus trichocarpa]	0.872	0.695	0.739	2e-32
356561522	212	PREDICTED: probable RNA-binding protein	0.818	0.424	0.663	4e-25
359490617	218	PREDICTED: probable RNA-binding protein	0.872	0.440	0.604	2e-24
147815698	216	hypothetical protein VITISV_021345 [Viti	0.863	0.439	0.610	2e-24
302143805	188	unnamed protein product [Vitis vinifera]	0.872	0.510	0.604	2e-24
356519834	190	PREDICTED: LOW QUALITY PROTEIN: probable	0.827	0.478	0.652	5e-24
357438285	157	Polyadenylate-binding protein [Medicago	0.818	0.573	0.655	1e-23
388504432	157	unknown [Medicago truncatula]	0.818	0.573	0.644	2e-23
358344347	157	Polyadenylate-binding protein [Medicago	0.818	0.573	0.644	3e-23

>gi|255545196|ref|XP_002513659.1| conserved hypothetical protein [Ricinus communis] gi|223547567|gb|EEF49062.1| conserved hypothetical protein [Ricinus communis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 85/101 (84%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA+LAKEKMHGRLACGRPLVVRLASEKYLE+AAQNS +AVGE  KT   GGTSGQM+R+
Sbjct: 69  EEAELAKEKMHGRLACGRPLVVRLASEKYLEEAAQNSCRAVGEMKKTSTAGGTSGQMSRN 128

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLNCLSGK 102
           AKIAAIKNKL+ LEEE SS KKQKQ+ +   N  L+ LSG+
Sbjct: 129 AKIAAIKNKLRTLEEEGSSVKKQKQSGSILGNSRLDRLSGE 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077392|ref|XP_002305243.1| predicted protein [Populus trichocarpa] gi|222848207|gb|EEE85754.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 81/96 (84%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EAKLAKEKMHGRLACGRPLVVRLASEKY+++AAQ+SS A+GEA K G  G T GQ +RS
Sbjct: 37  EEAKLAKEKMHGRLACGRPLVVRLASEKYVDEAAQDSSTALGEAKKAGLTGSTLGQTSRS 96

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLN 97
           AKIAAIKNKL+ALEE   S KKQKQAD+ SC  SL+
Sbjct: 97  AKIAAIKNKLRALEEGGPSVKKQKQADSDSCKDSLD 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561522|ref|XP_003549030.1| PREDICTED: probable RNA-binding protein 18-like [Glycine max]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFV--GGTSGQMN 59
           +EA+LAKEKMHGRLACGRPL VRLA EK++ + A NS+KA GE +K      GG  GQ +
Sbjct: 121 EEAELAKEKMHGRLACGRPLFVRLAGEKFMLETADNSTKAAGEGHKMHLTGGGGAMGQTS 180

Query: 60  RSAKIAAIKNKLKALEEESSSAKKQKQADNSS 91
           R AKIAAIKNKLK+LEEESS +KKQK++DN S
Sbjct: 181 RHAKIAAIKNKLKSLEEESSRSKKQKRSDNIS 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490617|ref|XP_002272950.2| PREDICTED: probable RNA-binding protein 18-like [Vitis vinifera]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 75/96 (78%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA+LAKEKMHG+L CGRPL VRLA+EK L + A+ + + VG +NK+   G +SGQM+RS
Sbjct: 116 EEAELAKEKMHGKLICGRPLTVRLANEKSLMETAEAAPQRVGTSNKSSLTGRSSGQMSRS 175

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLN 97
           AKIAAIKNKLK +EEES+  K+QK AD  SC+  L+
Sbjct: 176 AKIAAIKNKLKEMEEESNGTKRQKVADKVSCSNGLD 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815698|emb|CAN68282.1| hypothetical protein VITISV_021345 [Vitis vinifera]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 74/95 (77%)

Query: 3   EAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSA 62
           EA+LAKEKMHG+L CGRPL VRLA+EK L + A+ + + VG +NK+   G +SGQM+RSA
Sbjct: 115 EAELAKEKMHGKLICGRPLTVRLANEKSLMETAEAAPQRVGTSNKSSLTGRSSGQMSRSA 174

Query: 63  KIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLN 97
           KIAAIKNKLK +EEES+  K+QK AD  SC+  L+
Sbjct: 175 KIAAIKNKLKEMEEESNGTKRQKVADKVSCSNGLD 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143805|emb|CBI22666.3| unnamed protein product [Vitis vinifera]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 75/96 (78%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA+LAKEKMHG+L CGRPL VRLA+EK L + A+ + + VG +NK+   G +SGQM+RS
Sbjct: 86  EEAELAKEKMHGKLICGRPLTVRLANEKSLMETAEAAPQRVGTSNKSSLTGRSSGQMSRS 145

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSSCNGSLN 97
           AKIAAIKNKLK +EEES+  K+QK AD  SC+  L+
Sbjct: 146 AKIAAIKNKLKEMEEESNGTKRQKVADKVSCSNGLD 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519834|ref|XP_003528574.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 18-like [Glycine max]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 71/92 (77%), Gaps = 1/92 (1%)

Query: 1   MQEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTS-GQMN 59
           MQEA+LAKEKMHGRLACGRPLVVRLA +K + +    S+KA GE +K    GG + GQ +
Sbjct: 99  MQEAELAKEKMHGRLACGRPLVVRLAGDKCMLETTDRSTKAAGEGHKMHLTGGGAMGQTS 158

Query: 60  RSAKIAAIKNKLKALEEESSSAKKQKQADNSS 91
           RSAKI A KNKLK+LEEESS  KKQKQ+D +S
Sbjct: 159 RSAKIVATKNKLKSLEEESSRTKKQKQSDYTS 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438285|ref|XP_003589418.1| Polyadenylate-binding protein [Medicago truncatula] gi|357473041|ref|XP_003606805.1| Polyadenylate-binding protein [Medicago truncatula] gi|355478466|gb|AES59669.1| Polyadenylate-binding protein [Medicago truncatula] gi|355507860|gb|AES89002.1| Polyadenylate-binding protein [Medicago truncatula]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 70/90 (77%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA LAKEKMHGRLAC RPLVVRLA E+Y  + A +S+KAV E +K    GG  GQ +RS
Sbjct: 68  EEAILAKEKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLTGGGIGQTSRS 127

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSS 91
           AKIAAIKNKLK+LEE++S  KKQK +DN S
Sbjct: 128 AKIAAIKNKLKSLEEDNSKTKKQKLSDNVS 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504432|gb|AFK40282.1| unknown [Medicago truncatula]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 70/90 (77%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA LAKEKMHGRLAC RPLV+RLA E+Y  + A +S+KAV E +K    GG  GQ +RS
Sbjct: 68  EEAILAKEKMHGRLACSRPLVIRLAGERYALEKADSSTKAVSEGHKLHLTGGGIGQTSRS 127

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSS 91
           AKIAAIKNKLK+LEE++S  KKQK +DN S
Sbjct: 128 AKIAAIKNKLKSLEEDNSKTKKQKLSDNVS 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344347|ref|XP_003636251.1| Polyadenylate-binding protein [Medicago truncatula] gi|355502186|gb|AES83389.1| Polyadenylate-binding protein [Medicago truncatula]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 70/90 (77%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
           +EA LA+EKMHGRLAC RPLVVRLA E+Y  + A +S+KAV E +K    GG  GQ +RS
Sbjct: 68  EEAILAREKMHGRLACSRPLVVRLAGERYALEKADSSTKAVSEGHKLHLTGGGIGQTSRS 127

Query: 62  AKIAAIKNKLKALEEESSSAKKQKQADNSS 91
           AKIAAIKNKLK+LEE++S  KKQK +DN S
Sbjct: 128 AKIAAIKNKLKSLEEDNSKTKKQKLSDNIS 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:504955051	79	AT5G52545 "AT5G52545" [Arabido	0.681	0.949	0.538	4.9e-14

TAIR|locus:504955051 AT5G52545 "AT5G52545" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/78 (53%), Positives = 51/78 (65%)

Query:    11 MHGRLACGRPLVVRLASEKYLEDAAQNSSK-AVGEANKTGFVGGTS-GQMNRSXXXXXXX 68
             MHGRLACGRPLVVRLASEK+LED++ + SK ++ E N+T FV G+S GQM+R        
Sbjct:     1 MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query:    69 XXXXXXEE-ESSSAKKQK 85
                   EE E    KKQK
Sbjct:    61 NKLKALEEDEKRDPKKQK 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.303   0.120   0.312    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110        84   0.00091  102 3  10 23  0.40    30
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.57u 0.14s 10.71t   Elapsed:  00:00:01
  Total cpu time:  10.57u 0.14s 10.71t   Elapsed:  00:00:01
  Start:  Fri May 10 06:41:27 2013   End:  Fri May 10 06:41:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	97.17
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	95.52
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	94.9
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	94.7
smart00361	70	RRM_1 RNA recognition motif.	94.61
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	94.24
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	93.74
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	92.99
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	92.88
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	92.33
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	92.25
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	91.44
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	91.12
COG0724	306	RNA-binding proteins (RRM domain) [General functio	90.77
smart00360	71	RRM RNA recognition motif.	90.6
smart00362	72	RRM_2 RNA recognition motif.	90.51
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	90.35
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	88.05
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	87.61
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	87.26
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	87.09
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	86.26
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	83.98
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	82.4
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	82.39
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	82.0
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	81.74
KOG4207	256	consensus Predicted splicing factor, SR protein su	80.66

>PF13893 RRM_5: RNA recognition motif

Probab=97.17  E-value=0.00036  Score=41.76  Aligned_cols=25  Identities=44%  Similarity=0.640  Sum_probs=24.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++.|||....|++|-|.||
T Consensus        32 ~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen   32 EDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEC
Confidence            7899999999999999999999997

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=95.52  E-value=0.013  Score=42.60  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||.++
T Consensus        87 e~A~~Al~~lng~~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         87 GAATAAISEMDGKELNGRHIRVNPANDR  114 (144)
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence            6899999999999999999999999865

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=94.90  E-value=0.024  Score=47.58  Aligned_cols=28  Identities=50%  Similarity=0.739  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||||.|.||..+
T Consensus       337 ~~A~~A~~~~~g~~~~gk~l~V~~a~~k  364 (562)
T TIGR01628       337 EEANRAVTEMHGRMLGGKPLYVALAQRK  364 (562)
T ss_pred             HHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence            6899999999999999999999999976

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=94.70  E-value=0.027  Score=43.54  Aligned_cols=28  Identities=18%  Similarity=0.234  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.++|++|-|+||...
T Consensus        56 ~~A~~Ai~~l~g~~l~g~~i~v~~a~~~   83 (352)
T TIGR01661        56 EDAEKAVNSLNGLRLQNKTIKVSYARPS   83 (352)
T ss_pred             HHHHHHHhhcccEEECCeeEEEEeeccc
Confidence            7999999999999999999999999755

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00361 RRM_1 RNA recognition motif

Probab=94.61  E-value=0.028  Score=35.42  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEE
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVR   24 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR   24 (110)
                      ++|+.|++.|||+...||+|.|+
T Consensus        48 ~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361       48 EDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             HHHHHHHHHhCCCEECCEEEEeC
Confidence            68999999999999999999875

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=94.24  E-value=0.041  Score=45.43  Aligned_cols=28  Identities=39%  Similarity=0.567  Sum_probs=25.7

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~ek   29 (110)
                      ++|+.|++.|||.+..+  +||.|+||.+.
T Consensus       246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       246 EEAQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             HHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence            78999999999999866  79999999987

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=93.74  E-value=0.044  Score=50.04  Aligned_cols=28  Identities=36%  Similarity=0.482  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      -+|+.|++.|||.-+.||||.|.||=.+
T Consensus       169 ~dA~~Al~~~N~~~i~gR~VAVDWAV~K  196 (678)
T KOG0127|consen  169 KDAEKALEFFNGNKIDGRPVAVDWAVDK  196 (678)
T ss_pred             HHHHHHHHhccCceecCceeEEeeeccc
Confidence            3799999999999999999999999888

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=92.99  E-value=0.21  Score=40.37  Aligned_cols=28  Identities=43%  Similarity=0.519  Sum_probs=26.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||...
T Consensus       239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~  266 (457)
T TIGR01622       239 EEAKEALEVMNGFELAGRPIKVGYAQDS  266 (457)
T ss_pred             HHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence            6899999999999999999999999854

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=92.88  E-value=0.082  Score=42.68  Aligned_cols=28  Identities=18%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|+|.+..+.
T Consensus       421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~  448 (457)
T TIGR01622       421 DAALAAFQALNGRYFGGKMITAAFVVND  448 (457)
T ss_pred             HHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence            6899999999999999999999999888

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=92.33  E-value=0.16  Score=28.75  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=22.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEe
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRL   25 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~   25 (110)
                      ++|..|++.++|...-|+++.|+|
T Consensus        51 ~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590          51 EDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             HHHHHHHHHhCCCeECCeEEEEeC
Confidence            689999999999999999999986

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=92.25  E-value=0.12  Score=46.13  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.|++|.|.||+..
T Consensus       280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~  307 (578)
T TIGR01648       280 EDAVKAMDELNGKELEGSEIEVTLAKPV  307 (578)
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            6899999999999999999999999875

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=91.44  E-value=0.15  Score=42.06  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.+++|.|.||...
T Consensus       160 e~A~~Ai~~LnG~~l~gr~i~V~~a~p~  187 (346)
T TIGR01659       160 ADSQRAIKNLNGITVRNKRLKVSYARPG  187 (346)
T ss_pred             HHHHHHHHHcCCCccCCceeeeeccccc
Confidence            6899999999999999999999999753

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=91.12  E-value=0.22  Score=38.51  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=24.8

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~ek   29 (110)
                      ++|+.|++.|||...-|  +||.|+||...
T Consensus       142 ~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~  171 (352)
T TIGR01661       142 DEADRAIKTLNGTTPSGCTEPITVKFANNP  171 (352)
T ss_pred             HHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence            68999999999998866  79999999755

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=90.77  E-value=0.24  Score=33.71  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=24.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLAS   27 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~   27 (110)
                      +.|+.|++.|||....||+|.|.++.
T Consensus       168 ~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         168 ESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             HHHHHHHHHcCCCeECCceeEeeccc
Confidence            57999999999999999999999975

>smart00360 RRM RNA recognition motif

Probab=90.60  E-value=0.26  Score=27.59  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEE
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVR   24 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR   24 (110)
                      ++|+.|++.|||..+.|++|.|+
T Consensus        49 ~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360       49 EDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             HHHHHHHHHcCCCeeCCcEEEeC
Confidence            68999999999999999998874

>smart00362 RRM_2 RNA recognition motif

Probab=90.51  E-value=0.24  Score=27.92  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEE
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVR   24 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR   24 (110)
                      ++|+.|++.|||..+-|++|.|+
T Consensus        50 ~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362       50 EDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             HHHHHHHHHhCCcEECCEEEeeC
Confidence            58999999999999999999874

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=90.35  E-value=0.26  Score=40.29  Aligned_cols=28  Identities=18%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      +.|+.|++.|||..+.|++|.|+||...
T Consensus       348 ~~a~~A~~~l~g~~~~~~~l~v~~a~~~  375 (509)
T TIGR01642       348 SVTDVAIAALNGKDTGDNKLHVQRACVG  375 (509)
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEECccC
Confidence            5799999999999999999999999754

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=88.05  E-value=0.5  Score=42.29  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceec---cCCceEEEecccccchH
Q 033868            2 QEAKLAKEKMHGRLA---CGRPLVVRLASEKYLED   33 (110)
Q Consensus         2 eEAElAkekmnGKLa---~gRpLVVR~A~ek~~~~   33 (110)
                      |-|..||+-|||.--   |+-|||||||.-+.+.+
T Consensus       176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~  210 (510)
T KOG0144|consen  176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD  210 (510)
T ss_pred             HHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence            458899999999874   99999999999885544

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=87.61  E-value=0.47  Score=39.90  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=25.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.||++.+.||+|-|.|+..
T Consensus        53 ~~A~~Al~~ln~~~i~gk~i~i~~s~~   79 (562)
T TIGR01628        53 ADAERALETMNFKRLGGKPIRIMWSQR   79 (562)
T ss_pred             HHHHHHHHHhCCCEECCeeEEeecccc
Confidence            689999999999999999999999864

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=87.26  E-value=0.59  Score=39.31  Aligned_cols=28  Identities=29%  Similarity=0.423  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|-|.+++..
T Consensus       324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~  351 (481)
T TIGR01649       324 YQAQLALTHLNGVKLFGKPLRVCPSKQQ  351 (481)
T ss_pred             HHHHHHHHHhCCCEECCceEEEEEcccc
Confidence            6899999999999999999999999776

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=87.09  E-value=0.44  Score=40.59  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      +|||.||+-|||.-.++|.|---||-.|.
T Consensus       115 ~dAEnAI~~MnGqWlG~R~IRTNWATRKp  143 (321)
T KOG0148|consen  115 EDAENAIQQMNGQWLGRRTIRTNWATRKP  143 (321)
T ss_pred             HHHHHHHHHhCCeeeccceeeccccccCc
Confidence            79999999999999999999999998874

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=86.26  E-value=0.54  Score=40.80  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|++|-++|||.+|-||.|=|+.|-..
T Consensus       147 ~dadRARa~LHgt~VEGRkIEVn~ATar  174 (376)
T KOG0125|consen  147 ADADRARAELHGTVVEGRKIEVNNATAR  174 (376)
T ss_pred             hhHHHHHHHhhcceeeceEEEEeccchh
Confidence            6899999999999999999999999877

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=83.98  E-value=0.99  Score=38.01  Aligned_cols=28  Identities=21%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             hHHHHHHHhhcceeccCC--ceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGR--PLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gR--pLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.++  +|.|.||+..
T Consensus       145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~  174 (481)
T TIGR01649       145 NSAQHAKAALNGADIYNGCCTLKIEYAKPT  174 (481)
T ss_pred             HHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence            689999999999999764  7888898875

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=82.40  E-value=1  Score=40.75  Aligned_cols=27  Identities=37%  Similarity=0.535  Sum_probs=24.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|++|++.|||+.+.||+|-|++...
T Consensus       160 e~A~~Ai~~lnG~~i~GR~IkV~rp~~  186 (612)
T TIGR01645       160 EAAQLALEQMNGQMLGGRNIKVGRPSN  186 (612)
T ss_pred             HHHHHHHHhcCCeEEecceeeeccccc
Confidence            689999999999999999999998654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=82.39  E-value=1.4  Score=31.66  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      +-|++|..+|+|..|.|+.|.|++....
T Consensus        50 ~~A~RA~KRmegEdVfG~kI~v~~~~~~   77 (90)
T PF11608_consen   50 EFAERAQKRMEGEDVFGNKISVSFSPKN   77 (90)
T ss_dssp             HHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred             HHHHHHHHhhcccccccceEEEEEcCCc
Confidence            4699999999999999999999998555

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=82.00  E-value=1.2  Score=35.91  Aligned_cols=28  Identities=32%  Similarity=0.576  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      |-|-.|++.|||.+.|.||++|-.|..+
T Consensus       150 easd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen  150 EASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             HHHHHHHHHhccchhcCCceEEEEEEec
Confidence            4577899999999999999999998765

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=81.74  E-value=0.56  Score=39.36  Aligned_cols=28  Identities=50%  Similarity=0.708  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      +||..|...|||+++.++||.|-||...
T Consensus       322 eeA~~A~~~~n~~~i~~k~l~vav~qr~  349 (369)
T KOG0123|consen  322 EEAKKAMTEMNGRLIGGKPLYVAVAQRK  349 (369)
T ss_pred             HHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence            6899999999999999999999998855

>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]

Probab=80.66  E-value=1  Score=37.43  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=25.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      .+||-|.+.|+|+++-||-|-|-+|.--
T Consensus        66 ~daedA~damDG~~ldgRelrVq~aryg   93 (256)
T KOG4207|consen   66 RDAEDALDAMDGAVLDGRELRVQMARYG   93 (256)
T ss_pred             chHHHHHHhhcceeeccceeeehhhhcC
Confidence            3799999999999999999988888644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	8e-05

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRS 61
             +K   + +  R   G+  VV   ++++L      S K       +G         +  
Sbjct: 123 ASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSR 182

Query: 62  A 62
           A
Sbjct: 183 A 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.65
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.44
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	97.34
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	97.3
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	97.27
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.27
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.23
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.22
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	97.21
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.2
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	97.19
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	97.19
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	97.17
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	97.17
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	97.16
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.16
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	97.15
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	97.15
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	97.14
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	97.13
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	97.12
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	97.12
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.12
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	97.11
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	97.1
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.1
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	97.1
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.1
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.09
1x5p_A	97	Negative elongation factor E; structure genomics,	97.09
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.09
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	97.08
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	97.08
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.07
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	97.07
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.06
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	97.06
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	97.06
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	97.06
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	97.05
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	97.05
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.05
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	97.05
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	97.05
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.05
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	97.04
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	97.04
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	97.03
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.02
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	97.02
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	97.0
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	97.0
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	97.0
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	96.98
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	96.96
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	96.95
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	96.95
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	96.93
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	96.93
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	96.91
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.88
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	96.88
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	96.88
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	96.87
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	96.85
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	96.84
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	96.84
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	96.83
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	96.81
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	96.8
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	96.73
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	96.72
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	96.72
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	96.7
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	96.7
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	96.65
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	96.64
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.63
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	96.62
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	96.56
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	96.55
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	96.54
2dis_A	109	Unnamed protein product; structural genomics, RRM	96.53
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	95.5
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	96.43
2div_A	99	TRNA selenocysteine associated protein; structural	96.42
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	96.41
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	96.41
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	96.35
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	96.32
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	96.31
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	96.3
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	96.29
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	96.28
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	96.12
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	96.12
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	96.09
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	96.05
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	95.99
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	95.97
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	95.94
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	95.91
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	95.9
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	95.89
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	95.87
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	95.78
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	95.74
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	95.72
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	95.64
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	95.61
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	95.53
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	95.49
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	95.44
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	95.4
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	95.37
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	95.34
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	95.22
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.14
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	95.05
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	95.01
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	94.97
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	94.93
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	94.86
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	94.85
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	94.7
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	94.67
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	94.64
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	94.63
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	94.62
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	94.55
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	94.38
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	94.38
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	94.33
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	94.25
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	94.18
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	94.16
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	93.97
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	93.89
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	93.84
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	93.67
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	93.66
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	93.62
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	93.57
1x4e_A	85	RNA binding motif, single-stranded interacting pro	93.45
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	93.23
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	92.59
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	90.43
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	90.12
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	88.57
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	88.43
1x5o_A	114	RNA binding motif, single-stranded interacting pro	88.3
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	87.78
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	86.63
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	82.98

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.65  E-value=2.9e-05  Score=51.17  Aligned_cols=28  Identities=21%  Similarity=0.059  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.||...
T Consensus        57 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A           57 LEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             HHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999987

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=97.44  E-value=7.8e-05  Score=45.14  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        54 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A           54 DDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            6899999999999999999999999865

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=97.34  E-value=0.00011  Score=44.87  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=25.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....|++|.|+||..+
T Consensus        59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~k   86 (87)
T 3bs9_A           59 WDAENAIQQMGGQWLGGRQIRTNWATRK   86 (87)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence            6899999999999999999999999764

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.30  E-value=0.00017  Score=44.78  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=27.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.||+|.|+||..+.
T Consensus        58 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   86 (95)
T 2dnz_A           58 ECARRALEQLNGFELAGRPMRVGHVTERL   86 (95)
T ss_dssp             HHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred             HHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence            68999999999999999999999998873

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.00019  Score=45.44  Aligned_cols=28  Identities=43%  Similarity=0.629  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           66 EEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             HHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            6899999999999999999999999876

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.27  E-value=0.00016  Score=47.06  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=27.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||....||+|.|.||..++
T Consensus        74 ~~A~~Ai~~lng~~~~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           74 EDALRAIQCVNNVVVDGRTLKASLGTTKY  102 (111)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence            68999999999999999999999999875

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.23  E-value=0.00022  Score=45.26  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||...
T Consensus        63 ~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   90 (96)
T 2dgx_A           63 QDAIGAVNSLHRYKIGSKKILVSLATGA   90 (96)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            6899999999999999999999999765

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.22  E-value=0.00022  Score=44.94  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2cqb_A           65 EDAAAAIDNMNESELFGRTIRVNLAKPM   92 (102)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence            6899999999999999999999999877

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=97.21  E-value=0.00017  Score=49.25  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc-cch
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK-YLE   32 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek-~~~   32 (110)
                      ++|+.|++.|||+...||+|.|.|+.+. |..
T Consensus        66 e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~   97 (114)
T 3s6e_A           66 AAAIAAVNALHGRWFAGKMITAAYVPLPTYHN   97 (114)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence            6899999999999999999999999888 443

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.20  E-value=0.0002  Score=44.54  Aligned_cols=28  Identities=36%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   86 (96)
T 1x5t_A           59 DASDAAIEAMNGQYLCNRPITVSYAFKK   86 (96)
T ss_dssp             HHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence            6899999999999999999999999876

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.19  E-value=0.00029  Score=44.14  Aligned_cols=28  Identities=29%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~   88 (99)
T 1whw_A           61 EHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             HHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            6899999999999999999999999887

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.19  E-value=0.00026  Score=44.71  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        62 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           62 TLAEIAKVELDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             HHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             HHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence            6899999999999999999999999876

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.17  E-value=0.00025  Score=44.90  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        66 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dnm_A           66 RDAQDAEAAMDGAELDGRELRVQVARYG   93 (103)
T ss_dssp             SHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred             HHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence            6899999999999999999999999876

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=97.17  E-value=0.00022  Score=45.93  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        68 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~   95 (115)
T 2dgo_A           68 WDAENAIQQMGGQWLGGRQIRTNWATRK   95 (115)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            6899999999999999999999999877

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=97.16  E-value=0.00029  Score=44.56  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccC---CceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACG---RPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~g---RpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.|   ++|.|+||..+
T Consensus        67 ~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~   97 (105)
T 2dnh_A           67 TEAQAAIHALHGSQTMPGASSSLVVKFADTD   97 (105)
T ss_dssp             HHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred             HHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence            68999999999999998   99999999876

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.16  E-value=0.00023  Score=50.59  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||..+
T Consensus       154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~  181 (213)
T 4f02_A          154 EAAERAIEKMNGMLLNDRKVFVGRFKSR  181 (213)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999876

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.15  E-value=0.00031  Score=43.80  Aligned_cols=28  Identities=21%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||..+
T Consensus        65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           65 DQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             HHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            5799999999999999999999999876

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00023  Score=45.78  Aligned_cols=28  Identities=39%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  103 (113)
T 2cpe_A           76 PTAKAAVEWFDGKDFQGSKLKVSLARKK  103 (113)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             HHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence            6899999999999999999999999876

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.14  E-value=0.00031  Score=44.49  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||...
T Consensus        66 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2cqi_A           66 RDAAAALAAMNGRKILGKEVKVNWATTP   93 (103)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence            6899999999999999999999999886

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.13  E-value=0.00034  Score=44.00  Aligned_cols=28  Identities=32%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             hHHHHHHHhhcceecc--CCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLAC--GRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~--gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.  |++|.|+||..+
T Consensus        64 ~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~   93 (97)
T 1why_A           64 DAAQAACAKMRGFPLGGPDRRLRVDFAKSG   93 (97)
T ss_dssp             HHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred             HHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence            6899999999999999  999999999864

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.00033  Score=43.51  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        53 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A           53 TAAEDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             HHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             HHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence            6899999999999999999999999876

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.00028  Score=43.80  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        54 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A           54 ADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            6899999999999999999999999876

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.00028  Score=44.47  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        65 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           65 EDAKAAKEAMEDGEIDGNKVTLDWAKPK   92 (102)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence            6899999999999999999999999875

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=97.11  E-value=0.0003  Score=43.81  Aligned_cols=30  Identities=20%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||..+.|++|.|.||..+..
T Consensus        62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   91 (97)
T 1nu4_A           62 SSATNALRSMQGFPFYDKPMRIQYAKTDSD   91 (97)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence            689999999999999999999999988743

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=97.10  E-value=0.0003  Score=44.16  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        55 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   82 (96)
T 2x1f_A           55 ESSASAVRNLNGYQLGSRFLKCGYSSNS   82 (96)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             HHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence            6899999999999999999999999988

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.10  E-value=0.00032  Score=43.76  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        64 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   91 (96)
T 1fjc_A           64 ADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             HHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            6899999999999999999999999876

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.10  E-value=0.00036  Score=44.17  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        68 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   95 (105)
T 1x5u_A           68 EDADYAIKIMDMIKLYGKPIRVNKASAH   95 (105)
T ss_dssp             HHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             HHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            6899999999999999999999999876

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.10  E-value=0.00036  Score=43.45  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=27.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||+...||+|.|+||....
T Consensus        51 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           51 EQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             HHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            68999999999999999999999998873

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.09  E-value=0.00031  Score=43.70  Aligned_cols=28  Identities=25%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcc-eeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHG-RLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnG-KLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||| ....|++|.|+||..+
T Consensus        55 ~~A~~A~~~l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A           55 NWAIRAIETLSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             HHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence            689999999999 8999999999999876

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.09  E-value=0.00034  Score=44.15  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||..+
T Consensus        60 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           60 ESADQAVAELNGTQVESVQLKVNIARKQ   87 (97)
T ss_dssp             HHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred             HHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            6899999999999999999999999876

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.09  E-value=0.00036  Score=43.99  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        64 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           64 EDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             HHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             HHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            6899999999999999999999999877

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.08  E-value=0.00032  Score=44.41  Aligned_cols=28  Identities=36%  Similarity=0.573  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        66 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   93 (103)
T 2cq3_A           66 ADADRAREKLHGTVVEGRKIEVNNATAR   93 (103)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence            6899999999999999999999999887

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.08  E-value=0.0003  Score=45.26  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        72 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           72 ESAAHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence            6899999999999999999999999886

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.07  E-value=0.00031  Score=46.10  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||..+
T Consensus        56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~~   83 (115)
T 4f25_A           56 EAAERAIEKMNGMLLNDRKVFVGRFKSR   83 (115)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence            6899999999999999999999999876

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.07  E-value=0.00041  Score=43.86  Aligned_cols=28  Identities=36%  Similarity=0.448  Sum_probs=26.6

Q ss_pred             hHHHHHHHhh-cceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKM-HGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekm-nGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.| ||..+.|++|.|+||..+
T Consensus        69 ~~a~~A~~~l~~~~~~~g~~l~v~~a~~~   97 (107)
T 2cph_A           69 QDAKKAFNALCHSTHLYGRRLVLEWADSE   97 (107)
T ss_dssp             HHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             HHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence            6899999999 999999999999999877

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.06  E-value=0.00039  Score=44.63  Aligned_cols=28  Identities=25%  Similarity=0.276  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||..+
T Consensus        78 ~~a~~Ai~~l~g~~~~g~~l~v~~a~~~  105 (115)
T 2cpx_A           78 EIAWQALHLVNGYKLYGKILVIEFGKNK  105 (115)
T ss_dssp             HHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence            6899999999999999999999999876

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=97.06  E-value=0.00039  Score=44.28  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        56 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   83 (103)
T 2dgu_A           56 DGAVKAMEEMNGKDLEGENIEIVFAKPP   83 (103)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence            6899999999999999999999999877

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=97.06  E-value=0.00032  Score=42.65  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=25.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||...
T Consensus        58 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   85 (88)
T 4a8x_A           58 DEAEKALKHMDGGQIDGQEITATAVLAP   85 (88)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred             HHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence            6899999999999999999999999754

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.06  E-value=0.00031  Score=43.93  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        61 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~   88 (98)
T 2cpf_A           61 EQAQKALKQLQGHTVDGHKLEVRISERA   88 (98)
T ss_dssp             HHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred             HHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence            6899999999999999999999999876

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.05  E-value=0.00032  Score=44.94  Aligned_cols=28  Identities=21%  Similarity=0.070  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        72 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           72 RDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            6899999999999999999999999876

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.05  E-value=0.00035  Score=44.20  Aligned_cols=28  Identities=21%  Similarity=-0.007  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        68 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   95 (103)
T 2cq0_A           68 EDAARAIAGVSGFGYDHLILNVEWAKPS   95 (103)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             HHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence            6899999999999999999999999876

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.05  E-value=0.00036  Score=48.09  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=27.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||+...||||.|.||..+.
T Consensus        83 ~~A~~Ai~~lng~~l~gr~l~V~~a~~~~  111 (127)
T 2a3j_A           83 ESAQAFVEAFQGYPFQGNPLVITFSETPQ  111 (127)
T ss_dssp             HHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred             HHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence            68999999999999999999999999873

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.05  E-value=0.00035  Score=44.02  Aligned_cols=29  Identities=31%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.|++|.|.||..+.
T Consensus        65 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   93 (102)
T 1x5s_A           65 DDAKDAMMAMNGKSVDGRQIRVDQAGKSS   93 (102)
T ss_dssp             HHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            68999999999999999999999998763

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.05  E-value=0.00043  Score=43.14  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        55 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A           55 EDAVEAIRGLDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred             HHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence            6899999999999999999999999876

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.05  E-value=0.0003  Score=43.95  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=24.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|++|...
T Consensus        56 ~~a~~Ai~~l~g~~~~gr~i~V~~~~~~   83 (90)
T 3p5t_L           56 ASSKKLMDLLPKRELHGQNPVVTPSNKL   83 (90)
T ss_dssp             HHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred             HHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence            6899999999999999999999999875

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.04  E-value=0.00045  Score=43.48  Aligned_cols=28  Identities=32%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....|++|.|+||..+
T Consensus        61 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           61 ETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             HHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             HHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence            6899999999999999999999999887

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=97.04  E-value=0.00034  Score=44.88  Aligned_cols=28  Identities=18%  Similarity=0.170  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccC-CceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACG-RPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~g-RpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...| |+|.|.||...
T Consensus        65 ~~A~~Ai~~lng~~~~g~r~l~V~~a~~~   93 (100)
T 3ns6_A           65 NDAKKIIKSFHGKRLDLKHRLFLYTMKDV   93 (100)
T ss_dssp             HHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred             HHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence            68999999999999999 99999999875

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.00042  Score=43.68  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=27.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.|++|.|+||+.+.
T Consensus        62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpd_A           62 EDAVEAMKALNGKVLDGSPIEVTLAKPVD   90 (99)
T ss_dssp             HHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            68999999999999999999999998764

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=97.02  E-value=0.00032  Score=43.30  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        59 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~   86 (92)
T 2dgv_A           59 EVAERACRMMNGMKLSGREIDVRIDRNA   86 (92)
T ss_dssp             HHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            6899999999999999999999999875

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=97.02  E-value=0.00036  Score=45.10  Aligned_cols=28  Identities=29%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||..+
T Consensus        78 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~  105 (115)
T 2cpz_A           78 VSAQAAIQSMNGFQIGMKRLKVQLKRSK  105 (115)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999876

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=97.00  E-value=0.00032  Score=46.69  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.||.+.
T Consensus        67 ~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~   94 (105)
T 2pe8_A           67 ESAIKAVVDLNGRYFGGRVVKACFYNLD   94 (105)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred             HHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence            6899999999999999999999999886

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00034  Score=44.19  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||....|++|.|+||..+.
T Consensus        56 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   84 (96)
T 2kvi_A           56 QSVRDAIECESQEMNFGKKLILEVSSSNA   84 (96)
T ss_dssp             HHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred             HHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence            68999999999999999999999998763

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.00  E-value=0.00039  Score=45.48  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.||..+
T Consensus        75 ~~A~~Ai~~lng~~~~gr~l~v~~a~~~  102 (112)
T 2dit_A           75 EEADYCIQTLDGRWFGGRQITAQAWDGT  102 (112)
T ss_dssp             HHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            6899999999999999999999999886

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=96.98  E-value=0.00042  Score=47.33  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      +||+.|++.|||..+.||+|.|.+|++-
T Consensus        54 ~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~   81 (89)
T 2wbr_A           54 EEANKAQMALNNCVLANTTIFAESPSEN   81 (89)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred             HHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence            6999999999999999999999999753

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=96.96  E-value=0.00052  Score=43.28  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||..+.||+|.|+||..+
T Consensus        69 ~~a~~A~~-l~g~~~~g~~l~V~~a~~~   95 (101)
T 1fj7_A           69 EDLEKALE-LTGLKVFGNEIKLEKPKGR   95 (101)
T ss_dssp             HHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred             HHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence            68999999 9999999999999999875

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=96.95  E-value=0.00046  Score=45.76  Aligned_cols=28  Identities=18%  Similarity=0.173  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||+|.|.||...
T Consensus        59 ~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A           59 RGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999755

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.95  E-value=0.00047  Score=42.71  Aligned_cols=27  Identities=22%  Similarity=0.148  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||....||+|.|+||+.+
T Consensus        61 ~~a~~A~~-~~g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A           61 EEVKQALK-CNREYMGGRYIEVFREKSG   87 (91)
T ss_dssp             HHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred             HHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence            68999999 9999999999999999865

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=96.93  E-value=0.00044  Score=43.62  Aligned_cols=29  Identities=24%  Similarity=0.452  Sum_probs=27.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.|++|.|+||..+.
T Consensus        48 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A           48 RDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             HHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             HHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            68999999999999999999999998874

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=96.93  E-value=0.00045  Score=53.24  Aligned_cols=28  Identities=36%  Similarity=0.465  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhcceec------------cCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLA------------CGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa------------~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+            .|++|.|+||.+.
T Consensus       190 ~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          190 ANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             HHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             HHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence            689999999999999            8999999999876

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=96.91  E-value=0.00062  Score=44.98  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=27.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||..+.|++|.|.||.....
T Consensus        59 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   88 (116)
T 2fy1_A           59 ADAKNAAKDMNGKSLHGKAIKVEQAKKPSF   88 (116)
T ss_dssp             HHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            689999999999999999999999987743

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.88  E-value=0.00066  Score=45.79  Aligned_cols=28  Identities=32%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus       123 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A          123 RDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             HHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999865

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=96.88  E-value=0.00067  Score=42.93  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceec---cCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLA---CGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa---~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||+..   .|++|.|+||..+.
T Consensus        66 ~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~   97 (106)
T 2dgp_A           66 ESALKAQSALHEQKTLPGMNRPIQVKPADSES   97 (106)
T ss_dssp             HHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred             HHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence            689999999999988   89999999998763

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=96.88  E-value=0.00043  Score=45.96  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.++.+.
T Consensus        70 ~~A~~Ai~~lnG~~f~GR~i~v~~~~~~   97 (105)
T 3v4m_A           70 FDCQKAMQGLTGRKFANRVVVTKYCDPD   97 (105)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred             HHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence            6899999999999999999999999887

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00076  Score=42.35  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||..+.|++|.|+||..+
T Consensus        63 ~~a~~A~~-~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           63 QSVDQAVN-MHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             HHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred             HHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence            68999999 9999999999999999876

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=96.85  E-value=0.00075  Score=44.09  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||..+
T Consensus        75 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~  102 (126)
T 3ex7_B           75 KEAQAAMEGLNGQDLMGQPISVDWCFVR  102 (126)
T ss_dssp             HHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred             HHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence            6899999999999999999999999876

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.84  E-value=0.00069  Score=43.71  Aligned_cols=28  Identities=11%  Similarity=0.152  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccC-----CceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACG-----RPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~g-----RpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.|     ++|.|.||..+
T Consensus        61 ~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~   93 (108)
T 1x4c_A           61 EDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR   93 (108)
T ss_dssp             HHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred             HHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence            68999999999999999     99999999886

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=96.84  E-value=0.00074  Score=43.46  Aligned_cols=28  Identities=29%  Similarity=0.240  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||...
T Consensus        58 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   85 (115)
T 3lqv_A           58 FDAKNAVDHLSGFNVSNRYLVVLYYNAN   85 (115)
T ss_dssp             HHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence            6899999999999999999999999865

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=96.83  E-value=0.0009  Score=44.38  Aligned_cols=28  Identities=25%  Similarity=0.215  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        95 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           95 SSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             HHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999876

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=96.81  E-value=0.00088  Score=43.90  Aligned_cols=29  Identities=24%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.||+|.|+||....
T Consensus        87 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  115 (124)
T 2kt5_A           87 ADALKAMKQYKGVPLDGRPMDIQLVASQI  115 (124)
T ss_dssp             HHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred             HHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence            68999999999999999999999998763

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.80  E-value=0.001  Score=42.30  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhc------ceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMH------GRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmn------GKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||      |..+.|++|.|+||..+
T Consensus        68 ~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           68 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR  101 (111)
T ss_dssp             HHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             HHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence            68999999999      99999999999999876

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.00058  Score=43.12  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhccee-ccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRL-ACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKL-a~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||.. ..|++|.|+||..+
T Consensus        62 ~~a~~A~~~l~g~~~~~g~~l~v~~a~~~   90 (104)
T 2dhg_A           62 LEQKRALTECQGAVGLGSKPVRLSVAIPK   90 (104)
T ss_dssp             HHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred             HHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence            68999999999999 99999999999766

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.00094  Score=42.76  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        67 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   94 (114)
T 2do0_A           67 IEAVQAISMFNGQLLFDRPMHVKMDERA   94 (114)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred             HHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence            6899999999999999999999999765

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=96.72  E-value=0.00068  Score=40.48  Aligned_cols=24  Identities=13%  Similarity=0.008  Sum_probs=22.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++ |||....||+|.|+||
T Consensus        52 ~~a~~a~~-~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           52 DIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred             HHHHHHHH-CCCCEECCEEEEEEeC
Confidence            67999998 9999999999999998

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.70  E-value=0.00083  Score=44.31  Aligned_cols=27  Identities=22%  Similarity=0.138  Sum_probs=25.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||....||+|.|.||..+
T Consensus        78 ~~a~~Al~-~~g~~~~gr~i~V~~a~~~  104 (124)
T 1wel_A           78 ADYKAALC-RHKQYMGNRFIQVHPITKK  104 (124)
T ss_dssp             HHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred             HHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence            68999999 9999999999999999988

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=96.70  E-value=0.00081  Score=43.23  Aligned_cols=28  Identities=29%  Similarity=0.424  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        73 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~  100 (110)
T 1wf1_A           73 RHARAAVLGENGRVLAGQTLDINMAGEP  100 (110)
T ss_dssp             HHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999865

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=96.65  E-value=0.0011  Score=44.42  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||...
T Consensus       103 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~  130 (143)
T 3egn_A          103 KAAAKALKEANGYVLFGKPMVVQFARSA  130 (143)
T ss_dssp             HHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            6899999999999999999999999765

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=96.64  E-value=0.00083  Score=41.35  Aligned_cols=27  Identities=26%  Similarity=0.170  Sum_probs=22.7

Q ss_pred             HHHHHHhhcceeccCCceEEEeccccc
Q 033868            4 AKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         4 AElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      |+.|++.|||....||+|.|+||....
T Consensus        55 a~~a~~~l~g~~~~g~~l~V~~a~~~~   81 (90)
T 2ki2_A           55 VSEAIAKLDNTDFMGRTIRVTEANPKK   81 (90)
T ss_dssp             HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred             HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            999999999999999999999998873

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=96.62  E-value=0.00098  Score=45.33  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=27.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||..+.|++|.|+||.....
T Consensus       100 ~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~  129 (135)
T 2lea_A          100 RDAEDAMDAMDGAVLDGRELRVQMARYGRP  129 (135)
T ss_dssp             HHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence            689999999999999999999999987543

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=96.56  E-value=0.0012  Score=40.33  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=25.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||....|++|.|+||+..
T Consensus        59 ~~a~~a~-~~~g~~~~g~~l~V~~a~~~   85 (89)
T 3ucg_A           59 ESVRTSL-ALDESLFRGRQIKVIPKRTN   85 (89)
T ss_dssp             HHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred             HHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence            6899999 99999999999999999764

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=96.55  E-value=0.0012  Score=44.85  Aligned_cols=28  Identities=14%  Similarity=0.057  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||...
T Consensus        92 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  119 (156)
T 1h2v_Z           92 ADAENAMRYINGTRLDDRIIRTDWDAGF  119 (156)
T ss_dssp             HHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            6899999999999999999999999875

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=96.54  E-value=0.0014  Score=41.63  Aligned_cols=28  Identities=21%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             hHHHHHHHhh-cceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKM-HGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekm-nGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.| ||....||+|.|.||..+
T Consensus        55 ~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~   83 (91)
T 2lxi_A           55 QDATRWMEANQHSLNILGQKVSMHYSDPK   83 (91)
T ss_dssp             HHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred             HHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence            7899999998 566789999999999876

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.53  E-value=0.0013  Score=41.82  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             hHHHHHHHhhc--ceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMH--GRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmn--GKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||  |....||+|.|.||..+
T Consensus        63 ~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~   92 (109)
T 2dis_A           63 RAAAMARRKLMPGRIQLWGHQIAVDWAEPE   92 (109)
T ss_dssp             HHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred             HHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence            68999999996  58999999999999877

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=95.50  E-value=0.00043  Score=44.92  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           68 PSAKAAIDWFDGKEFSGNPIKVSFATRR   95 (116)
Confidence            6899999999999999999999999876

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=96.43  E-value=0.0016  Score=44.93  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||..+
T Consensus       125 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  152 (165)
T 1rk8_A          125 KQALAAKEALNGAEIMGQTIQVDWCFVK  152 (165)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            6899999999999999999999999876

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.42  E-value=0.0018  Score=40.52  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=25.9

Q ss_pred             hHHHHHHHhhcceeccCCc----eEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRP----LVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRp----LVVR~A~ek   29 (110)
                      ++|+.|++.|||....|++    |.|.||...
T Consensus        63 ~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           63 ATAEKCLHKINGKPLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             HHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred             HHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence            6899999999999999999    999999764

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.41  E-value=0.0016  Score=41.30  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||..+.||+|.|.||..+
T Consensus        67 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dng_A           67 DSLKEAL-TYDGALLGDRSLRVDIAEGR   93 (103)
T ss_dssp             HHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred             HHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence            6899999 89999999999999999876

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=96.41  E-value=0.0015  Score=45.83  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||..+.||+|.|+||..+..
T Consensus       110 ~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~  139 (156)
T 3n9u_C          110 NSVHKLLELLPGKVLNGEKVDVRPATRQNL  139 (156)
T ss_dssp             HHHHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred             HHHHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence            689999999999999999999999988743

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=96.35  E-value=0.0017  Score=44.35  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.++.+.
T Consensus        82 e~A~~Ai~~LnGr~f~GR~i~v~~~~~~  109 (118)
T 3ue2_A           82 SETHKAIQALNGRWFAGRKVVAEVYDQE  109 (118)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred             HHHHHHHHHHCCCEECCcEEEEEEcChH
Confidence            6899999999999999999999999876

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.32  E-value=0.0023  Score=40.55  Aligned_cols=27  Identities=11%  Similarity=0.083  Sum_probs=25.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||..+.||+|.|+||..+
T Consensus        68 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           68 DSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             HHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             HHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence            6899999 99999999999999999886

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=96.31  E-value=0.0028  Score=43.43  Aligned_cols=28  Identities=25%  Similarity=0.017  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||+|.|+||...
T Consensus       178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~  205 (216)
T 2qfj_A          178 QSSQDAVSSMNLFDLGGQYLRVGKAVTP  205 (216)
T ss_dssp             HHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred             HHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence            6899999999999999999999999876

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.30  E-value=0.0016  Score=41.90  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||..+.|++|.|+||..+
T Consensus        78 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~  104 (114)
T 2cq4_A           78 QSVPLAI-GLTGQRLLGVPIIVQASQAE  104 (114)
T ss_dssp             GGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred             HHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence            6899999 99999999999999999876

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.29  E-value=0.0026  Score=44.16  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||.-+.||||.|.+|+.+.+
T Consensus        57 esA~~A~~~l~G~~l~gr~i~v~~A~~~sd   86 (96)
T 2diu_A           57 DSAERAQKRMENEDVFGNRIIVSFTPKNRE   86 (96)
T ss_dssp             HHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred             HHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence            689999999999999999999999998843

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.28  E-value=0.00095  Score=41.80  Aligned_cols=27  Identities=19%  Similarity=0.105  Sum_probs=25.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||..+.||+|.|+||.++
T Consensus        56 ~~a~~ai~-l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A           56 GAREAVLS-QSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             HHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred             HHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence            68999999 9999999999999999766

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=96.12  E-value=0.003  Score=45.63  Aligned_cols=28  Identities=11%  Similarity=0.193  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|.||+.+
T Consensus        53 ~~A~~Ai~~lng~~~~g~~l~v~~s~~~   80 (205)
T 3tyt_A           53 YAVDRAITHLNNNFMFGQKMNVCVSKQP   80 (205)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             HHHHHHHHHhCCCEECCceEEEEEccCC
Confidence            6899999999999999999999999865

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=96.12  E-value=0.0031  Score=45.71  Aligned_cols=28  Identities=21%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.||..+
T Consensus       237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~  264 (284)
T 3smz_A          237 EMAEEAQQQADGLSLGGSHLRVSFCAPG  264 (284)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             HHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence            6899999999999999999999999877

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.09  E-value=0.0023  Score=41.29  Aligned_cols=27  Identities=26%  Similarity=0.127  Sum_probs=24.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||| ...|++|.|+||...
T Consensus        70 ~~a~~Ai~~~~~-~~~g~~l~V~~a~~~   96 (116)
T 2cqd_A           70 AAAERACKDPNP-IIDGRKANVNLAYLG   96 (116)
T ss_dssp             HHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred             HHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence            689999999999 799999999999765

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.05  E-value=0.0041  Score=36.90  Aligned_cols=24  Identities=4%  Similarity=-0.028  Sum_probs=22.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++.|| ....||+|.|+||
T Consensus        53 ~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A           53 AGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             THHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             HHHHHHHHhCC-CccCCEEEEEEec
Confidence            68999999999 9999999999998

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=95.99  E-value=0.0043  Score=44.23  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||...
T Consensus       140 ~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A          140 ADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             HHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            6899999999999999999999999876

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=95.97  E-value=0.0027  Score=40.94  Aligned_cols=27  Identities=22%  Similarity=0.119  Sum_probs=25.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||....||+|.|.+|..+
T Consensus        66 ~~a~~Al~-~~~~~~~gr~i~V~~a~~~   92 (107)
T 2lmi_A           66 QDVQKALE-KHRMYMGQRYVEVYEINNE   92 (107)
T ss_dssp             HHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred             HHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence            68999999 9999999999999999887

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=95.94  E-value=0.0029  Score=42.12  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=25.6

Q ss_pred             HHHHHHHhhcce----eccCCceEEEecccc
Q 033868            3 EAKLAKEKMHGR----LACGRPLVVRLASEK   29 (110)
Q Consensus         3 EAElAkekmnGK----La~gRpLVVR~A~ek   29 (110)
                      +|+.|++.|||+    .+.||+|.|+||...
T Consensus        78 ~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~  108 (131)
T 2m2b_A           78 EAAQLLQILQALHPPLTIDGKTINVEFAKGS  108 (131)
T ss_dssp             HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred             HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence            799999999999    999999999999876

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=95.91  E-value=0.0042  Score=40.34  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|+ .|||..+.|++|.|.||+...
T Consensus        89 ~~a~~A~-~l~g~~~~g~~l~V~~a~~~~  116 (124)
T 2jwn_A           89 NSVDAAV-AMDETVFRGRTIKVLPKRTNM  116 (124)
T ss_dssp             HHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred             HHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence            6899999 899999999999999998653

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=95.90  E-value=0.0049  Score=44.57  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||...
T Consensus        63 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~   90 (282)
T 3pgw_A           63 SSATNALRSMQGFPFYDKPMRIQYAKTD   90 (282)
T ss_pred             HHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence            6899999999999999999999999776

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=95.89  E-value=0.0032  Score=46.64  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=27.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||+.+.||+|.|+||.....
T Consensus       123 ~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~  152 (229)
T 3q2s_C          123 ASSKKLMDLLPKRELHGQNPVVTPVNKQFL  152 (229)
T ss_dssp             THHHHHHTTSTTSCBTTBCCEEEECCHHHH
T ss_pred             HHHHHHHHHcCCCeECCEEeEEEECCCCcc
Confidence            689999999999999999999999987743

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=95.87  E-value=0.0056  Score=40.84  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccchHHhhcchhhhccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANK   47 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~~~~~~~s~k~l~~~~~   47 (110)
                      ++|+.|++ |||..+.||+|.|+||..+.....  .....|-+..+
T Consensus        65 ~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~--~~~~~l~v~nl  107 (175)
T 1fje_B           65 EDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKV--RAARTLLAKNL  107 (175)
T ss_dssp             HHHHHHHH-GGGEEETTEEEEEECCCCSSCSTT--GGGGEEEEESC
T ss_pred             HHHHHHHh-cCCCEeCCeEEEEecCCCcccccc--ccCCEEEEeCC
Confidence            68999995 999999999999999987632221  33444544444

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.0043  Score=40.34  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.|++|.|+||....
T Consensus        52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A           52 HDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             HHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            68999999999999999999999998763

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=95.74  E-value=0.0064  Score=39.89  Aligned_cols=28  Identities=18%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~   83 (168)
T 1b7f_A           56 MDSQRAIKVLNGITVRNKRLKVSYARPG   83 (168)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence            6899999999999999999999999876

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=95.72  E-value=0.0069  Score=44.58  Aligned_cols=29  Identities=17%  Similarity=0.143  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||+.+.|  ++|.|.||+.+.
T Consensus        95 ~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~  125 (164)
T 1sjr_A           95 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTS  125 (164)
T ss_dssp             HHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred             HHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence            68999999999999976  999999999873

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.64  E-value=0.0059  Score=40.31  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||+.+.||+|.|.+|..+
T Consensus        72 ~~a~~Al~-~~g~~~~gr~i~V~~a~~~   98 (118)
T 2db1_A           72 DDVKLALK-KDRESMGHRYIEVFKSHRT   98 (118)
T ss_dssp             HHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred             HHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence            68999999 9999999999999999877

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=95.61  E-value=0.0084  Score=41.02  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....|++|.|.||...
T Consensus        52 ~~a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A           52 NQAQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             HHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence            6899999999999999999999999866

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=95.53  E-value=0.0086  Score=38.94  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.|++|.|.|+....
T Consensus        55 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~   83 (167)
T 1fxl_A           55 KDAEKAINTLNGLRLQTKTIKVSYARPSS   83 (167)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             HHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence            68999999999999999999999998763

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.49  E-value=0.0055  Score=39.89  Aligned_cols=28  Identities=18%  Similarity=0.270  Sum_probs=25.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++. ||..+.||+|.|+||..+-
T Consensus        68 ~~a~~Al~~-~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           68 DDARKSERL-HRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             HHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred             HHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence            689999998 9999999999999998873

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.44  E-value=0.0065  Score=42.03  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.6

Q ss_pred             hHHHHHHHhhcceec-----cCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLA-----CGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa-----~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+     .|+||.|.+|.+.
T Consensus        74 ~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~  106 (114)
T 2cq2_A           74 EESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV  106 (114)
T ss_dssp             HHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred             HHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence            689999999999977     6899999998754

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=95.40  E-value=0.01  Score=42.39  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.||..+
T Consensus        83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~~  110 (229)
T 2adc_A           83 NQAQLAMSHLNGHKLHGKPIRITLSKHQ  110 (229)
T ss_dssp             HHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             HHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence            6899999999999999999999999866

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.37  E-value=0.01  Score=39.17  Aligned_cols=30  Identities=13%  Similarity=0.137  Sum_probs=25.7

Q ss_pred             hHHHHHHHhhc--ceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMH--GRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmn--GKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.||  |..+.||+|.|.||..+..
T Consensus        62 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~   93 (101)
T 2cq1_A           62 EAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL   93 (101)
T ss_dssp             HHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred             HHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence            68999999874  6789999999999998733

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.34  E-value=0.0066  Score=40.60  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             hHHHHHHHhhcce--eccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGR--LACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGK--La~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||.  .+.||+|.|.||...
T Consensus        63 ~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   92 (102)
T 1x4d_A           63 EDAQAAVDYYTTTPALVFGKPVRVHLSQKY   92 (102)
T ss_dssp             HHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred             HHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence            6899999999975  489999999999865

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.22  E-value=0.0074  Score=38.11  Aligned_cols=27  Identities=7%  Similarity=0.009  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++. ||....|++|.|+||..+
T Consensus        69 ~~a~~a~~~-~~~~~~g~~l~V~~a~~~   95 (105)
T 2dh8_A           69 NCVGTVLAS-RPHTLDGRNIDPKPCTPR   95 (105)
T ss_dssp             THHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred             HHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence            689999999 999999999999999876

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.14  E-value=0.012  Score=41.80  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|+|.++.+.
T Consensus       186 ~~a~~a~~~l~gr~~~gr~i~~~~~~~~  213 (222)
T 3dxb_A          186 SETHKAIQALNGRWFAGRKVVAEVYDQE  213 (222)
T ss_dssp             HHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred             HHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence            6899999999999999999999998865

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.05  E-value=0.013  Score=38.80  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcce--eccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGR--LACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGK--La~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||.  .+.||+|.|.||..+.
T Consensus        62 ~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~   92 (104)
T 1wex_A           62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKR   92 (104)
T ss_dssp             HHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred             HHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence            6899999999875  4899999999998873

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=95.01  E-value=0.012  Score=40.95  Aligned_cols=27  Identities=15%  Similarity=0.069  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||+...||+|.|.+|..+
T Consensus        99 e~a~~Al~-~~g~~l~gr~i~V~~a~~~  125 (136)
T 2hgl_A           99 DDVKMALK-KDRESMGHRYIEVFKSHRT  125 (136)
T ss_dssp             HHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred             HHHHHHHh-cCCCEECCEEEEEEECChH
Confidence            68999999 9999999999999999876

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=94.97  E-value=0.013  Score=39.48  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||....|++|.|.||+..
T Consensus        62 ~~A~~Al-~l~g~~~~g~~i~v~~~~~~   88 (198)
T 2yh0_A           62 DETTQAM-AFDGIIFQGQSLKIRRPHDY   88 (198)
T ss_dssp             HHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred             HHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence            7899999 89999999999999999876

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=94.93  E-value=0.015  Score=42.02  Aligned_cols=29  Identities=24%  Similarity=0.227  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||..+.||+|.|.||....
T Consensus       148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~  176 (284)
T 3smz_A          148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQ  176 (284)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            68999999999999999999999998773

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.86  E-value=0.0099  Score=38.92  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++ |||....||+|.|.|+.+...
T Consensus        63 e~a~~Ai~-~~~~~~~gr~l~V~~~~~~~~   91 (103)
T 1s79_A           63 ESAKKFVE-TPGQKYKETDLLILFKDDYFA   91 (103)
T ss_dssp             HHHHHHHT-SSCCCCTTTTCEEEEHHHHHH
T ss_pred             HHHHHHHH-cCCCEECCEEEEEEEchHHHH
Confidence            68999999 999999999999999987543

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.85  E-value=0.013  Score=37.66  Aligned_cols=27  Identities=19%  Similarity=0.115  Sum_probs=25.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++. ||..+.||+|.|+||..+
T Consensus        80 ~~a~~Ai~~-~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           80 AEVDAAMAA-RPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             HHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred             HHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence            589999998 999999999999999876

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.70  E-value=0.011  Score=40.30  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhc--ceeccCCceEEEecccccch
Q 033868            2 QEAKLAKEKMH--GRLACGRPLVVRLASEKYLE   32 (110)
Q Consensus         2 eEAElAkekmn--GKLa~gRpLVVR~A~ek~~~   32 (110)
                      ++|+.|++.|+  |..+.||||.|.||..+...
T Consensus        63 ~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~   95 (105)
T 1sjq_A           63 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK   95 (105)
T ss_dssp             HHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred             HHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence            68999999886  47899999999999987443

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.67  E-value=0.023  Score=39.37  Aligned_cols=30  Identities=23%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||.-+.|  ++|.|.||+.+.+
T Consensus        73 ~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l  104 (124)
T 2e5i_A           73 LCAQKAKAALNGADIYAGCCTLKIEYARPTRL  104 (124)
T ss_dssp             HHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred             HHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence            68999999999999988  6999999998843

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=94.64  E-value=0.022  Score=38.90  Aligned_cols=28  Identities=32%  Similarity=0.376  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|.|+...
T Consensus        81 ~~A~~A~~~l~~~~~~g~~l~v~~~~~~  108 (216)
T 2qfj_A           81 EAAQLALEQMNSVMLGGRNIKVGRPSNI  108 (216)
T ss_dssp             HHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred             HHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence            6899999999999999999999998876

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=94.63  E-value=0.017  Score=46.83  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|+|.||...
T Consensus       155 e~A~~Ai~~lng~~i~gr~i~V~~a~~~  182 (437)
T 3pgw_S          155 RDMHSAYKHADGKKIDGRRVLVDVERGR  182 (437)
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            6899999999999999999999999876

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.62  E-value=0.021  Score=37.96  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.++|  ..||||.|.||..+
T Consensus        65 ~~A~~Ai~~~~~--~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           65 KAAELAVQNEVG--LVDNPLKISWLEGQ   90 (100)
T ss_dssp             HHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred             HHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence            689999999888  46999999999876

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=94.55  E-value=0.017  Score=34.13  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=22.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++. ||....|++|.|+||
T Consensus        52 ~~a~~Ai~~-~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           52 EPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             HHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred             HHHHHHHHh-CCCeECCEEEEEEEC
Confidence            689999995 899999999999997

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=94.38  E-value=0.024  Score=41.10  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus       170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~  197 (292)
T 2ghp_A          170 EDARYCVEKLNGLKIEGYTLVTKVSNPL  197 (292)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            6899999999999999999999999877

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.38  E-value=0.027  Score=38.91  Aligned_cols=30  Identities=17%  Similarity=0.316  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcc--eeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHG--RLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnG--KLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||  ..+.||+|.|.||..+..
T Consensus        78 e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~  109 (119)
T 2ad9_A           78 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL  109 (119)
T ss_dssp             HHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred             HHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence            689999999985  589999999999988733

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=94.33  E-value=0.025  Score=39.92  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||+-+.|  ++|-|.||+.+.+
T Consensus        77 ~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l  108 (130)
T 3zzy_A           77 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL  108 (130)
T ss_dssp             HHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred             HHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence            68999999999999998  8999999998733

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.25  E-value=0.028  Score=36.38  Aligned_cols=27  Identities=19%  Similarity=0.005  Sum_probs=24.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||+...||+|.|.+|...
T Consensus        66 ~~a~~Al~-~~~~~~~gr~i~V~~~~~~   92 (102)
T 1wez_A           66 EDAVAAMA-KDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             HHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred             HHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence            78999995 7999999999999998754

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=94.18  E-value=0.028  Score=41.01  Aligned_cols=28  Identities=32%  Similarity=0.554  Sum_probs=26.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||...
T Consensus        69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~   96 (261)
T 3sde_A           69 TLAEIAKAELDGTILKSRPLRIRFATHG   96 (261)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             HHHHHHHHHcCCcEECCceeEeeecccC
Confidence            6899999999999999999999999764

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=94.16  E-value=0.034  Score=39.28  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=27.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYL   31 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~   31 (110)
                      ++|+.|++.|||+...||+|.|.|+.....
T Consensus        68 ~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~   97 (213)
T 4f02_A           68 ADAERALDTMNFDVIKGKPVRIMWSQRDPS   97 (213)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred             HHHHHHHHHhhhhhcCCccccccccccccc
Confidence            689999999999999999999999987733

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.97  E-value=0.034  Score=37.06  Aligned_cols=27  Identities=30%  Similarity=0.175  Sum_probs=25.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||+...||+|.|.+|.+.
T Consensus        67 ~~a~~Al-~~~~~~~~gr~i~V~~a~~~   93 (109)
T 2dnn_A           67 QDTFEAL-KRNRMLMIQRYVEVSPATER   93 (109)
T ss_dssp             HHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred             HHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence            6899999 69999999999999999877

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.89  E-value=0.029  Score=38.37  Aligned_cols=28  Identities=18%  Similarity=0.114  Sum_probs=24.3

Q ss_pred             hHHHHHHHhhcc--eeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHG--RLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnG--KLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||  ..+.||+|.|.||..+
T Consensus        73 ~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~  102 (112)
T 1x4f_A           73 EDAMAMVDHCLKKALWFQGRCVKVDLSEKY  102 (112)
T ss_dssp             HHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             HHHHHHHHHhccCCceECCEEEEEEECccc
Confidence            689999999875  5689999999999766

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.84  E-value=0.043  Score=34.39  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=23.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++  +|..+.|++|.|+||..+
T Consensus        68 ~~a~~A~~--~~~~~~g~~l~v~~a~~~   93 (103)
T 2cqg_A           68 ETQVKVMS--QRHMIDGRWCDCKLPNSK   93 (103)
T ss_dssp             HHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred             HHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence            68999999  578999999999999876

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=93.67  E-value=0.054  Score=35.36  Aligned_cols=24  Identities=8%  Similarity=-0.018  Sum_probs=20.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEe
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRL   25 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~   25 (110)
                      ++|+.|++.|||+.+.|++|-|.+
T Consensus        62 ~~a~~Ai~~l~g~~~~gr~~~~~~   85 (115)
T 3beg_B           62 EDMTYAVRKLDNTKFRSHEGETAY   85 (115)
T ss_dssp             HHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred             HHHHHHHHHhCCCEECCcEeeeEE
Confidence            689999999999999999944433

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.66  E-value=0.035  Score=35.46  Aligned_cols=27  Identities=22%  Similarity=0.097  Sum_probs=25.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++. ||+...||+|.|.+|..+
T Consensus        68 ~~a~~A~~~-~~~~~~gr~i~v~~~~~~   94 (104)
T 1wg5_A           68 EIAEKALKK-HKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             HHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred             HHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence            689999998 999999999999999876

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=93.62  E-value=0.034  Score=36.63  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=25.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||....|++|.|+|+...
T Consensus        62 ~~A~~A~-~~~~~~~~g~~i~v~~~~~~   88 (172)
T 2g4b_A           62 DETTQAM-AFDGIIFQGQSLKIRRPHDY   88 (172)
T ss_dssp             HHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred             HHHHHHH-HhCCcEecCceeeecCCccc
Confidence            6899999 89999999999999998765

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=93.57  E-value=0.038  Score=37.11  Aligned_cols=27  Identities=19%  Similarity=0.036  Sum_probs=23.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++. ||....|++|.|+||..+
T Consensus       157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k  183 (196)
T 1l3k_A          157 DSVDKIVIQ-KYHTVNGHNCEVRKALSK  183 (196)
T ss_dssp             HHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred             HHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence            689999987 899999999999999887

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.45  E-value=0.011  Score=35.84  Aligned_cols=26  Identities=12%  Similarity=-0.096  Sum_probs=23.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLAS   27 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~   27 (110)
                      ++|+.|++.|||+.+.||.|-|+|++
T Consensus        58 ~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A           58 SAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             HHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             HHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            68999999999999999999998875

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=93.23  E-value=0.057  Score=39.35  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             hHHHHHHHhh-cceecc---CCceEEEecccc
Q 033868            2 QEAKLAKEKM-HGRLAC---GRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekm-nGKLa~---gRpLVVR~A~ek   29 (110)
                      ++|+.|++.| ||.+..   +|||+|.||...
T Consensus       148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~  179 (261)
T 3sde_A          148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQF  179 (261)
T ss_dssp             HHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred             HHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence            6899999999 666666   999999999876

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.59  E-value=0.048  Score=37.35  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=24.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      +.|..|++ |||.=++||.|-|++|+...
T Consensus        60 ~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW   87 (91)
T 2dnr_A           60 SSALNVLS-LNGKELLNRTITIALKSPSG   87 (91)
T ss_dssp             HHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred             HHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence            46778888 99999999999999998763

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=90.43  E-value=0.089  Score=36.66  Aligned_cols=27  Identities=22%  Similarity=0.037  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+ .|||....||+|.|.+|...
T Consensus        97 e~A~~Al-~~~g~~l~gR~i~V~~a~~~  123 (139)
T 2hgn_A           97 EEAVAAM-SKDRANMQHRYIELFLNSTT  123 (139)
T ss_dssp             HHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred             HHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence            6899999 88999999999999998876

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=90.12  E-value=0.24  Score=32.34  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             hHHHHHHHhhcceecc---CCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLAC---GRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~---gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||....   ++++.|.++....
T Consensus        58 ~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~   89 (175)
T 3nmr_A           58 KAALEAQNALHNMKVLPGMHHPIQMKPADSEK   89 (175)
T ss_dssp             HHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC
T ss_pred             HHHHHHHHHhcCcEEccCCccceEEccccccc
Confidence            6899999999998766   7899999987663

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=88.57  E-value=0.2  Score=36.19  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||....|++|.|.|+...
T Consensus        92 ~~A~~A~~-~~~~~~~g~~i~v~~~~~~  118 (292)
T 2ghp_A           92 DGALAAIT-KTHKVVGQNEIIVSHLTEC  118 (292)
T ss_dssp             HHHHHHHT-TTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHH-hCCcEeCCcEEEEEECCCC
Confidence            68999995 9999999999999998765

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=88.43  E-value=0.29  Score=32.72  Aligned_cols=27  Identities=19%  Similarity=0.163  Sum_probs=23.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++. +|....|++|.|.||...
T Consensus        66 ~~A~~A~~~-~~~~~~g~~l~v~~~~~~   92 (196)
T 1l3k_A           66 EEVDAAMNA-RPHKVDGRVVEPKRAVSR   92 (196)
T ss_dssp             HHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred             HHHHHHHhc-CCCEECCEEeeeecccCc
Confidence            689999987 999999999999999766

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.30  E-value=0.18  Score=32.04  Aligned_cols=15  Identities=7%  Similarity=0.324  Sum_probs=14.1

Q ss_pred             hHHHHHHHhhcceec
Q 033868            2 QEAKLAKEKMHGRLA   16 (110)
Q Consensus         2 eEAElAkekmnGKLa   16 (110)
                      ++|+.|++.|||+.+
T Consensus        77 ~~a~~A~~~l~g~~~   91 (114)
T 1x5o_A           77 EKCEAVIGHFNGKFI   91 (114)
T ss_dssp             HHHHHHHHHHBTCCC
T ss_pred             HHHHHHHHHhCCCEE
Confidence            689999999999999

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.78  E-value=0.19  Score=34.21  Aligned_cols=27  Identities=22%  Similarity=0.116  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+++ ||+...||+|.|..|..+
T Consensus        79 ~~A~~Al~~-~~~~l~gR~i~V~~a~~~  105 (123)
T 2dha_A           79 EYAQNALRK-HKDLLGKRYIELFRSTAA  105 (123)
T ss_dssp             HHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred             HHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence            689999997 999999999999999876

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=86.63  E-value=0.16  Score=34.00  Aligned_cols=27  Identities=11%  Similarity=0.000  Sum_probs=25.1

Q ss_pred             hHHHHHHHhh-cceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKM-HGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekm-nGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.| ||+.+.| ++.|++|...
T Consensus        24 ~~A~~a~~~~~ng~~~~G-~~~~~~a~~~   51 (150)
T 2i2y_A           24 ATAEKVFKQYANDNGVDG-EWTYDDATKT   51 (150)
T ss_dssp             HHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred             HHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence            6899999999 9999999 9999999875

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=82.98  E-value=0.3  Score=30.35  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=23.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++  ||....|++|.|.||..+
T Consensus        61 ~~a~~Ai~--~~~~~~g~~l~v~~a~~~   86 (102)
T 2xs2_A           61 VDVQKIVE--SQINFHGKKLKLGPAIRK   86 (102)
T ss_dssp             CCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred             HHHHHHHh--CCCeECCEEEEEEECCcC
Confidence            67999999  999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	5e-04
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.002
d1o0pa_	104	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	0.003

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 34.9 bits (79), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 1   MQEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFV 51
              A+ A   ++G     + L V LA+           + AVG+ N  G++
Sbjct: 94  GSSAQQAIAGLNGFNILNKRLKVALAASG---HQRPGIAGAVGDGN--GYL 139

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (73), Expect = 0.002
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 2  QEAKLAKEKMHGRLACGRPLVVRLAS 27
           +A  A ++ +G    GRP+ ++L +
Sbjct: 52 ADALKAMKQYNGVPLDGRPMNIQLVT 77

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASE-KYLE 32
            + + A + + GR    R +V +      Y  
Sbjct: 69  FDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.71
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.67
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.66
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.63
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.59
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.57
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.55
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.49
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	97.48
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.45
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	97.45
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.45
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.44
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	97.44
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.36
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.35
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	97.34
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.32
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	97.28
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.28
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.28
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	97.27
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.27
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	97.27
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.26
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.26
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.23
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.12
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	97.1
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	97.08
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.08
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	97.07
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	97.05
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	97.03
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.02
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.99
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	96.91
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	96.87
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.85
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.82
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	96.55
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	96.45
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	96.39
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	96.23
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	96.21
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	96.18
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	96.16
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	96.01
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	95.84
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	95.8
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	95.78
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	95.48
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	95.35
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	94.81
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	94.52
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.46
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	94.39
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	94.36
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	94.16
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	93.8
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	93.68
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	93.43
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	93.16
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	93.11
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	92.85
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	92.82
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	92.72
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	90.92

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1e-05  Score=51.15  Aligned_cols=29  Identities=21%  Similarity=0.045  Sum_probs=27.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||....||+|.|.||....
T Consensus        57 ~~A~~A~~~lng~~~~gr~l~v~~a~~~~   85 (111)
T d1whxa_          57 LEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             HHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             HHHHHHHHHHcCCccCCCeEEEEECCCCc
Confidence            68999999999999999999999998773

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.6e-05  Score=48.66  Aligned_cols=28  Identities=25%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|+||..+
T Consensus        44 ~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          44 EQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             HHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             HHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            6899999999999999999999999865

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=1.4e-05  Score=50.41  Aligned_cols=28  Identities=36%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             hHHHHHHHhh-cceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKM-HGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekm-nGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.| ||..+.||+|.|.||+.+
T Consensus        62 ~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~   90 (94)
T d2cpha1          62 QDAKKAFNALCHSTHLYGRRLVLEWADSE   90 (94)
T ss_dssp             HHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             HHHHHHHHHccCCcEECCEEEEEEEcCCC
Confidence            7899999999 999999999999999875

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=49.38  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             hHHHHHHHhhccee-ccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRL-ACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKL-a~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||++ +.||+|.|+||..+
T Consensus        48 ~~A~~Ai~~lng~~~~~G~~i~V~~a~~k   76 (80)
T d2cqha1          48 NWAIRAIETLSGKVELHGKIMEVDYSVSK   76 (80)
T ss_dssp             HHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHhCCCeEECCEEEEEEEcCCc
Confidence            68999999999986 89999999999875

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.5e-05  Score=50.09  Aligned_cols=28  Identities=21%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||++.
T Consensus        64 e~a~~Ai~~l~g~~~~g~~l~V~~a~~~   91 (95)
T d1x4aa1          64 RDAEDAVYGRDGYDYDGYRLRVEFPRSG   91 (95)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEeccCC
Confidence            6899999999999999999999999863

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.8e-05  Score=48.23  Aligned_cols=28  Identities=36%  Similarity=0.612  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||||.|+||..+
T Consensus        52 ~~a~~Ai~~~~g~~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1          52 DASDAAIEAMNGQYLCNRPITVSYAFKK   79 (83)
T ss_dssp             HHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             HHHHHHHHhCCCcEECCEEEEEEEecCC
Confidence            6899999999999999999999999865

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.6e-05  Score=47.63  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|.|+||+++
T Consensus        50 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1          50 ESADQAVAELNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             HHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            6899999999999999999999999875

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=2.6e-05  Score=47.68  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=25.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||...
T Consensus        54 ~~A~~A~~~~~~~~~~g~~i~V~~a~~~   81 (85)
T d2cpfa1          54 EQAQKALKQLQGHTVDGHKLEVRISERA   81 (85)
T ss_dssp             HHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999643

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.2e-05  Score=47.44  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||+.+
T Consensus        55 ~~A~~Ai~~l~~~~i~g~~i~V~~akP~   82 (86)
T d2cpda1          55 EDAVEAMKALNGKVLDGSPIEVTLAKPV   82 (86)
T ss_dssp             HHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEeccCC
Confidence            6899999999999999999999999865

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.9e-05  Score=48.24  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|+||..+
T Consensus        62 ~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          62 EDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             HHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999876

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.3e-05  Score=48.45  Aligned_cols=28  Identities=36%  Similarity=0.573  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|+||.++
T Consensus        62 ~~a~~Ai~~l~~~~~~g~~l~V~~A~~r   89 (93)
T d2cq3a1          62 ADADRAREKLHGTVVEGRKIEVNNATAR   89 (93)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEecCcC
Confidence            6899999999999999999999999876

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.5e-05  Score=46.69  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=25.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||+...||+|+|+||..
T Consensus        54 e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1          54 EDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            789999999999999999999999975

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3e-05  Score=49.57  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.++||+|.|+||.++
T Consensus        61 ~~A~~Ai~~lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          61 RNARAAVAGEDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             HHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999765

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=3.2e-05  Score=47.14  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLAS   27 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~   27 (110)
                      ++|+.|++.|||+.+.||+|.|+||.
T Consensus        52 ~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          52 ADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEee
Confidence            68999999999999999999999985

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=3.8e-05  Score=49.93  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccccch
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKYLE   32 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~~~   32 (110)
                      ++|+.|++.|||+.+.||+|.|.||..+...
T Consensus        57 ~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~   87 (104)
T d1weya_          57 LSAADARLRLHKTEFLGKEMKLYFAQTLHIG   87 (104)
T ss_dssp             THHHHHHHTSTTSEETTEECEEECCCCSSCC
T ss_pred             HHHHHHHHHhcccccCCCEeEEeecccCCCC
Confidence            7899999999999999999999999877433

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.9e-05  Score=47.28  Aligned_cols=28  Identities=39%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|+||+.+
T Consensus        69 ~~a~~Ai~~l~g~~~~gr~i~V~~a~~~   96 (101)
T d2cpea1          69 PTAKAAVEWFDGKDFQGSKLKVSLARKK   96 (101)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999864

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.2e-05  Score=46.70  Aligned_cols=29  Identities=31%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||...+||+|.|+||..+.
T Consensus        58 ~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~   86 (90)
T d1x5sa1          58 DDAKDAMMAMNGKSVDGRQIRVDQAGKSS   86 (90)
T ss_dssp             HHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            68999999999999999999999998763

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=8e-05  Score=46.81  Aligned_cols=28  Identities=29%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|+||..+
T Consensus        61 ~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          61 EHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             HHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999876

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7e-05  Score=46.49  Aligned_cols=28  Identities=21%  Similarity=-0.007  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|.||+.+
T Consensus        61 ~~A~~Ai~~l~g~~~~g~~i~v~~akp~   88 (90)
T d2cq0a1          61 EDAARAIAGVSGFGYDHLILNVEWAKPS   88 (90)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEeeeCC
Confidence            6899999999999999999999999864

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=3.7e-05  Score=47.72  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||+|.|.||..+
T Consensus        59 ~~A~~Ai~~l~g~~~~g~~i~V~~a~~~   86 (89)
T d1cvja2          59 EAAERAIEKMNGMLLNDRKVFVGRFKSR   86 (89)
T ss_dssp             HHHHHHTTSSSEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999865

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.28  E-value=7.2e-05  Score=45.18  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||..+.||+|.|+||+.
T Consensus        55 ~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          55 MDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            689999999999999999999999974

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=8.5e-05  Score=46.13  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|-|+||.+.
T Consensus        55 ~~A~~A~~~l~g~~i~g~~l~V~~A~~~   82 (86)
T d2cpja1          55 TLAEIAKVELDNMPLRGKQLRVRFACHS   82 (86)
T ss_dssp             HHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEECCCc
Confidence            6899999999999999999999999875

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=7.8e-05  Score=46.10  Aligned_cols=28  Identities=21%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||...
T Consensus        54 ~~A~~a~~~l~~~~l~g~~l~V~~A~~~   81 (85)
T d2u2fa_          54 NVTDQAIAGLNGMQLGDKKLLVQRASVG   81 (85)
T ss_dssp             HHHHHHHHTSSSCCCSSSCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999754

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.27  E-value=6.9e-05  Score=46.48  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|.||..+
T Consensus        60 ~~A~~A~~~lng~~l~g~~l~V~~a~~k   87 (88)
T d1rk8a_          60 KQALAAKEALNGAEIMGQTIQVDWCFVK   87 (88)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEecCC
Confidence            6899999999999999999999999764

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.26  E-value=7.8e-05  Score=46.77  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|-|+||..+
T Consensus        64 ~~A~~A~~~l~~~~~~gr~i~V~~a~~k   91 (96)
T d1fjca_          64 ADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             HHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            6899999999999999999999999876

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=7.9e-05  Score=44.85  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||....||+|.|.||+.
T Consensus        55 ~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          55 KDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            689999999999999999999999974

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=9.9e-05  Score=45.99  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|.|+||..+
T Consensus        51 ~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_          51 EQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            7899999999999999999999999766

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=45.31  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|||....|++|.|+||+.+.
T Consensus        57 ~~A~~A~~~~~~~~~~g~~l~v~~ak~~~   85 (91)
T d1nu4a_          57 SSATNALRSMQGFPFYDKPMRIQYAKTDS   85 (91)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEeCCCc
Confidence            68999999999999999999999998764

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00016  Score=44.67  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|.||..+
T Consensus        58 ~~A~~ai~~l~~~~i~g~~l~v~~a~p~   85 (89)
T d2cqba1          58 EDAAAAIDNMNESELFGRTIRVNLAKPM   85 (89)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            5799999999999999999999999865

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.08  E-value=0.00019  Score=47.26  Aligned_cols=28  Identities=25%  Similarity=0.215  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        95 ~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          95 SSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             HHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999865

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0001  Score=44.84  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||+.+.||+|.|.||..
T Consensus        53 ~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1          53 ADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             HHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            689999999999999999999999963

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00013  Score=46.43  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||+|.|.||...
T Consensus        57 ~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   84 (114)
T d2f9da1          57 FDAKNACDHLSGFNVCNRYLVVLYYNAN   84 (114)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999765

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00013  Score=45.68  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=25.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||..+.||+|.|.||..
T Consensus        60 ~~A~~Ai~~l~g~~~~gr~i~V~~a~~   86 (93)
T d1h2vz_          60 ADAENAMRYINGTRLDDRIIRTDWDAG   86 (93)
T ss_dssp             HHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            689999999999999999999999854

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00018  Score=42.36  Aligned_cols=24  Identities=13%  Similarity=0.008  Sum_probs=22.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++ |||+...||+|.||+|
T Consensus        52 ~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          52 DIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             HHHHHHHh-cCCCEECCeEEEEEEC
Confidence            68999997 9999999999999998

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00021  Score=44.18  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.|++|-|+||+..
T Consensus        59 ~~A~~A~~~l~~~~~~g~~i~v~~a~~~   86 (90)
T d2cqia1          59 RDAAAALAAMNGRKILGKEVKVNWATTP   86 (90)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999754

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00018  Score=45.49  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+.+.||+|-|.||+++
T Consensus        65 ~~A~~Ai~~l~~~~i~g~~l~v~~ak~~   92 (96)
T d1x4ga1          65 ESAAHAIVSVNGTTIEGHVVKCYWGKES   92 (96)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            6899999999999999999999999875

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00029  Score=44.13  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||....||+|-|.||+..
T Consensus        51 ~~A~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1          51 NQAQLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             HHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999765

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00035  Score=43.97  Aligned_cols=28  Identities=32%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||..+.||+|.|+||..+
T Consensus        61 ~~a~~ai~~l~~~~~~g~~i~V~~a~~~   88 (104)
T d1p1ta_          61 ETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             HHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            6899999999999999999999999876

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00024  Score=43.76  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=24.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||....||+|.|.||..+
T Consensus        59 ~~a~~Al~-~n~~~~~gr~l~V~~a~~k   85 (86)
T d2ghpa3          59 DSAERALQ-MNRSLLGNREISVSLADKK   85 (86)
T ss_dssp             HHHHHHGG-GTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHHh-cCCCEECCEEEEEEEcCCC
Confidence            68999996 9999999999999999764

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0003  Score=45.05  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.++.+.
T Consensus        69 e~A~~A~~~l~Gr~f~gR~v~v~f~~~~   96 (104)
T d1o0pa_          69 FDCQKAMQGLTGRKFANRVVVTKYCDPD   96 (104)
T ss_dssp             HHHHHHHHHHSSCCSSSSCCEEEEECHH
T ss_pred             HHHHHHHHHHCCCEECCeEEEEEEcCHH
Confidence            7899999999999999999999999876

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.55  E-value=0.00086  Score=40.75  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             hHHHHHHHhhcceec-cCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLA-CGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa-~gRpLVVR~A~e   28 (110)
                      ++|+.|++.|||... .|++|.|.||+.
T Consensus        56 ~~A~~A~~~l~g~~~~~~~~i~v~~akk   83 (83)
T d2b0ga1          56 LQSNAAKEALQGFKITPTHAMKITFAKK   83 (83)
T ss_dssp             HHHHHHHHHHTTCBSSTTCBCEEEECCC
T ss_pred             HHHHHHHHHhCCcEeCCCcEEEEEEecC
Confidence            679999999999776 579999999973

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0008  Score=42.84  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=25.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...||+|.|.++..+
T Consensus        68 e~A~~A~~~lng~~~~gr~i~v~~~~g~   95 (99)
T d2dita1          68 EEADYCIQTLDGRWFGGRQITAQAWDGT   95 (99)
T ss_dssp             HHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred             HHHHHHHHHhCCcEECCEEEEEEEeCCc
Confidence            7899999999999999999999998643

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0012  Score=40.22  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=24.3

Q ss_pred             hHHHHHHHhhcceecc-CCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLAC-GRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~-gRpLVVR~A~e   28 (110)
                      ++|+.|+..|||..+. ||+|-|.||+.
T Consensus        59 ~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          59 EEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             HHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             HHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            7899999999998774 89999999975

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0018  Score=39.55  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             hHHHHHHHhhc------ceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMH------GRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmn------GKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||      |..+.||+|.|+||..+
T Consensus        61 ~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k   94 (98)
T d1x4ha1          61 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR   94 (98)
T ss_dssp             HHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             HHHHHHHHHcccccccCCcEECCEEEEEEECCCC
Confidence            68999999886      78899999999999764

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00079  Score=41.38  Aligned_cols=28  Identities=11%  Similarity=-0.012  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||+...|++|.|.|+..+
T Consensus        46 ~~a~~Ai~~l~g~~~~g~~i~v~~~~~~   73 (87)
T d3begb1          46 EDMTYAVRKLDNTKFRSHEGETAYIRVK   73 (87)
T ss_dssp             HHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred             HHHHHHHHHhCCCEECCcEeEEeEEecC
Confidence            6899999999999999999999998765

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0011  Score=42.03  Aligned_cols=28  Identities=7%  Similarity=-0.065  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|+++|||....||+|-|+|+..+
T Consensus        61 ~~a~~Ai~~lng~~~~g~~i~v~~~~~~   88 (98)
T d1wg4a_          61 EDMEYALRKLDDTKFRSHEGETSYIRVY   88 (98)
T ss_dssp             HHHHHHHHHHSSEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHHHhCCCEeCCeEEEEEEEecC
Confidence            6899999999999999999999999765

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0012  Score=41.53  Aligned_cols=28  Identities=18%  Similarity=-0.011  Sum_probs=25.2

Q ss_pred             ChHHHHHHHhhcceeccCCceEEEecccc
Q 033868            1 MQEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         1 meEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      .++|+.|++ |||+.+.||+|-|.|+...
T Consensus        65 ~~~a~~Al~-~~~~~i~gR~I~V~~s~~~   92 (102)
T d1weza_          65 HEDAVAAMA-KDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             SHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred             HHHHHHHHH-cCCCEECCEEEEEEEcCCC
Confidence            378999986 8999999999999998865

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=39.28  Aligned_cols=29  Identities=10%  Similarity=0.075  Sum_probs=25.2

Q ss_pred             hHHHHHHHhh--cceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKM--HGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekm--nGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|++.|  |+.+..||||.|+||+.+.
T Consensus        55 e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~~   85 (88)
T d2cq1a1          55 EAAITMVNYYSAVTPHLRNQPIYIQYSNHKE   85 (88)
T ss_dssp             HHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred             HHHHHHHHHHccCCCccCCCEEEEEECCCCC
Confidence            7899999987  4679999999999998763

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0016  Score=41.15  Aligned_cols=27  Identities=26%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|||. +.||+|.|+||...
T Consensus        63 ~~A~~Ai~~~~~~-l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          63 AAAERACKDPNPI-IDGRKANVNLAYLG   89 (103)
T ss_dssp             HHHHHHHTCSSCE-ETTEECEEEESTTT
T ss_pred             HHHHHHHHHCCCc-CCCEEEEEEEcCCC
Confidence            6899999999985 68999999999764

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0024  Score=39.56  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=23.7

Q ss_pred             hHHHHHHHhhcce--eccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGR--LACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGK--La~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.|++.  ...||+|.|.||..+
T Consensus        56 ~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~   85 (96)
T d2disa1          56 RAAAMARRKLMPGRIQLWGHQIAVDWAEPE   85 (96)
T ss_dssp             HHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred             HHHHHHHHHHcCCCeEECCEEEEEEEcCCC
Confidence            6899999999754  447999999999876

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0021  Score=40.11  Aligned_cols=27  Identities=19%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ |||+...||+|.|++|..+
T Consensus        61 ~~a~~Al~-~n~~~i~gr~i~V~~~~~~   87 (103)
T d2cpya1          61 DDARKSER-LHRKKLNGREAFVHVVTLE   87 (103)
T ss_dssp             HHHHHHGG-GCSEEETTEEEEEEEECHH
T ss_pred             HHHHHHHh-cCCCeECCcEEEEEECCHH
Confidence            68999996 8999999999999999876

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0035  Score=39.04  Aligned_cols=28  Identities=11%  Similarity=0.060  Sum_probs=23.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek~   30 (110)
                      ++|+.|+ .|||..+.||+|.|+||..+.
T Consensus        68 e~a~~~~-~~~~~~~~gr~l~V~~a~~~~   95 (104)
T d1wi8a_          68 DSLLSAL-SLNEESLGNKRIRVDVADQAQ   95 (104)
T ss_dssp             HHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred             HHHHHHH-HcCCCEECCEEEEEEECCCCC
Confidence            5676554 699999999999999998773

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0062  Score=37.83  Aligned_cols=27  Identities=37%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             hHHHHHHHhhcceeccC--CceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACG--RPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~g--RpLVVR~A~e   28 (110)
                      ++|+.|++.|||..+.|  ++|-|.||+.
T Consensus        64 ~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          64 DAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             HHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             HHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            78999999999999876  5899999975

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.0065  Score=37.73  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             hHHHHHHHhhcceeccCCceE-EEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLV-VRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLV-VR~A~ek   29 (110)
                      ++|+.|++ |||+...||.+| |+-+.++
T Consensus        50 ~~A~~Al~-~nG~~~~g~~~vgV~~~~~k   77 (81)
T d1wwha1          50 LQARKALS-KDGRIFGESIMIGVKPCIDK   77 (81)
T ss_dssp             HHHHHHHT-TTTCEETTTEECEEEECCCH
T ss_pred             HHHHHHHh-cCCCeECCcEEEEEEeCCCh
Confidence            68999995 999999999876 9888766

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.012  Score=35.46  Aligned_cols=24  Identities=4%  Similarity=-0.068  Sum_probs=22.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++ |||..+.||+|-|++|
T Consensus        53 ~~a~~al~-~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          53 AGVDKVLA-QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             THHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred             HHHHHHHH-cCCCEECCeEEEEEEC
Confidence            68999997 7999999999999998

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0093  Score=37.98  Aligned_cols=32  Identities=25%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             ChHHHHHHHhhcceeccCCceEEEecccc-cchH
Q 033868            1 MQEAKLAKEKMHGRLACGRPLVVRLASEK-YLED   33 (110)
Q Consensus         1 meEAElAkekmnGKLa~gRpLVVR~A~ek-~~~~   33 (110)
                      .++|+.|++ |||..+.||+|-|++|... +.+.
T Consensus        70 ~e~a~~al~-~~~~~i~gR~i~V~~~~~~~~~~~  102 (112)
T d1wela1          70 EADYKAALC-RHKQYMGNRFIQVHPITKKGMLEK  102 (112)
T ss_dssp             SHHHHHHHT-SCSBCSTTSCBEEEEECHHHHHHH
T ss_pred             HHHHHHHHH-cCCCcCCCEEEEEEEcChHHHHHH
Confidence            378998885 9999999999999999877 4443

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.01  Score=37.16  Aligned_cols=27  Identities=19%  Similarity=0.041  Sum_probs=24.5

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++ +||....||+|-|++|+..
T Consensus        68 e~a~~a~~-~~~~~i~gR~i~V~~~~~~   94 (104)
T d1wg5a_          68 EIAEKALK-KHKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             HHHHHHHT-TTTCCSSSSCCEEEEECTT
T ss_pred             HHHHHHHh-hCCCEEcceEEEEEECCHH
Confidence            68999996 8999999999999999876

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.013  Score=36.92  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             hHHHHHHHhhcceec--cCCceEEEeccccc
Q 033868            2 QEAKLAKEKMHGRLA--CGRPLVVRLASEKY   30 (110)
Q Consensus         2 eEAElAkekmnGKLa--~gRpLVVR~A~ek~   30 (110)
                      |+|+.|++.|||+.+  .+++|-|.|++.+.
T Consensus        56 e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~   86 (108)
T d2adba1          56 VSAQHAKLSLDGQNIYNACCTLRIDFSKLTS   86 (108)
T ss_dssp             HHHHHHHHHHHSCCSSTTCCCCEEEECSSCS
T ss_pred             HHHHHHHHHHCCCEeccCCcEEEEEecCCcc
Confidence            789999999999988  57888888887763

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.011  Score=36.08  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=23.3

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++ +||.-..||+|.|+|+++
T Consensus        58 e~a~~al~-~~~~~~~g~~l~v~~~~d   83 (85)
T d1zh5a2          58 ESAKKFVE-TPGQKYKETDLLILFKDD   83 (85)
T ss_dssp             HHHHHHHT-CCCCEETTEECEEEEGGG
T ss_pred             HHHHHHHH-HCCCEECCEEEEEEEcCC
Confidence            68999995 799999999999999764

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.024  Score=35.40  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=24.4

Q ss_pred             hHHHHHHHhhc--ceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMH--GRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmn--GKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.||  +-.+.|+||.|+||+.+
T Consensus        62 e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~   91 (104)
T d1wexa_          62 DSAKECVTFAADVPVYIAGQQAFFNYSTSK   91 (104)
T ss_dssp             HHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred             HHHHHHHHHHcCCCcEEeeEEEEEEEcCCC
Confidence            68999999885  55788999999999887

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.68  E-value=0.019  Score=35.39  Aligned_cols=27  Identities=26%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             hHHHHHHHh--hcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEK--MHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkek--mnGKLa~gRpLVVR~A~e   28 (110)
                      ++|+.|++.  +||..+.||||-|.||..
T Consensus        56 ~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          56 EDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             HHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             hhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            689999994  588899999999999974

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.004  Score=37.94  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEeccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASE   28 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~e   28 (110)
                      |+|+.|++ |||....||+|-|+++++
T Consensus        59 e~a~~a~~-l~g~~~~Gr~l~V~r~k~   84 (90)
T d1u2fa_          59 DETTQAMA-FDGIIFQGQSLKIRRPHD   84 (90)
T ss_dssp             TTTTTGGG-GSSCCSSSSCCCCBCTTC
T ss_pred             HHHHHHHh-hCCcEECCEEEEECCCCC
Confidence            67899985 999999999999987664

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.013  Score=35.75  Aligned_cols=26  Identities=19%  Similarity=0.055  Sum_probs=22.7

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      +.|+.|+.  +|..+.||+|.|+||..+
T Consensus        53 ~~a~~a~~--~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_          53 QIAQSLCG--EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             HHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred             HHHHHHHh--CCCEECCEEeEEEeCCCC
Confidence            57888874  899999999999999776

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.025  Score=33.50  Aligned_cols=24  Identities=8%  Similarity=0.066  Sum_probs=21.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|++ +||....||+|.||-|
T Consensus        52 ~~a~~Al~-~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_          52 ESVDKVMD-QKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             HHHHHHHH-TCCCCBTTBCCEECCC
T ss_pred             HHHHHHHh-cCCCEECCCEEEeeEC
Confidence            68999997 7999999999999876

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.033  Score=32.67  Aligned_cols=17  Identities=24%  Similarity=0.049  Sum_probs=16.0

Q ss_pred             hhcceeccCCceEEEec
Q 033868           10 KMHGRLACGRPLVVRLA   26 (110)
Q Consensus        10 kmnGKLa~gRpLVVR~A   26 (110)
                      .|||....||+|.|+.|
T Consensus        62 ~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          62 IQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             HCSCCEETTEECEEEEC
T ss_pred             HhCCCEECCEEEEEEEC
Confidence            58999999999999987

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.037  Score=34.53  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=24.4

Q ss_pred             hHHHHHHH--hhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKE--KMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAke--kmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++  .+||-.+.||+|-|.||..+
T Consensus        66 ~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~   95 (99)
T d1x4fa1          66 EDAMAMVDHCLKKALWFQGRCVKVDLSEKY   95 (99)
T ss_dssp             HHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             HHHHHHHHHHhcCCceECCEEEEEEEcCCc
Confidence            58999998  58898999999999999653

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.028  Score=34.77  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             hHHHHHHHhhcceeccCCceEEEecccc
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLASEK   29 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A~ek   29 (110)
                      ++|+.|++.+|  ...||+|.|+||..+
T Consensus        61 ~~a~~al~~~~--~l~Gr~i~v~~a~~k   86 (90)
T d2cqga1          61 ETQVKVMSQRH--MIDGRWCDCKLPNSK   86 (90)
T ss_dssp             HHHHHHHHSCE--EETTEEEEEECCCTT
T ss_pred             HHHHHHHhcCC--ccCCEEeEEEeCCCC
Confidence            57999999665  789999999999876

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.92  E-value=0.067  Score=31.73  Aligned_cols=24  Identities=13%  Similarity=0.057  Sum_probs=21.2

Q ss_pred             hHHHHHHHhhcceeccCCceEEEec
Q 033868            2 QEAKLAKEKMHGRLACGRPLVVRLA   26 (110)
Q Consensus         2 eEAElAkekmnGKLa~gRpLVVR~A   26 (110)
                      ++|+.|+ .|||+...||+|.|.-+
T Consensus        51 ~~a~~Al-~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          51 DGALAAI-TKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             HHHHHHH-TTTTCEETTEECEEEEC
T ss_pred             HHhHHHH-HhcCcEECCEEEEEEEC
Confidence            6899998 58999999999999865