BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033869
(110 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297745506|emb|CBI40586.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 88/110 (80%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG LQYELPHM RP+RF CP CPYVC++E++VKIKRKQ L KKEI+PIF++D
Sbjct: 65 MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 124
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M GP T+ TCP C GKAV+ +LQTRSADEPMS FY C N+NC +W E
Sbjct: 125 MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRE 174
>gi|225470966|ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Vitis vinifera]
Length = 111
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 88/110 (80%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG LQYELPHM RP+RF CP CPYVC++E++VKIKRKQ L KKEI+PIF++D
Sbjct: 1 MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M GP T+ TCP C GKAV+ +LQTRSADEPMS FY C N+NC +W E
Sbjct: 61 MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRE 110
>gi|356567921|ref|XP_003552163.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Glycine max]
Length = 111
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 87/110 (79%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCP+CG MLQYELP+M RPSRF C ACPYVC++E+RV+IKRKQ L +KEI+PIF++D
Sbjct: 1 MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M P TE TCP C HGKA + E QTRSADEP ++FY C N +CK +W E
Sbjct: 61 MTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110
>gi|351725003|ref|NP_001238101.1| uncharacterized protein LOC100527062 [Glycine max]
gi|255631470|gb|ACU16102.1| unknown [Glycine max]
Length = 111
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 82/110 (74%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG MLQYELP+M RPSRF C ACPYVC +E+RV+IKRKQ L KEI+PIF++D
Sbjct: 1 MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M TE TCP C HGKA + E QTRSAD P ++FY C N CK +W E
Sbjct: 61 MTNAASTEATCPFCGHGKAAFKEFQTRSADGPATLFYKCLNNECKKQWRE 110
>gi|449446776|ref|XP_004141147.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cucumis sativus]
Length = 111
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 80/110 (72%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG MLQ+ELP+M + SRF CP CPYV +E+RVKIKRKQ L KKE++PI + D
Sbjct: 1 MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M QTE TCP C GKA + ++Q RSADEP + FY C N+NC+ W E
Sbjct: 61 MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE 110
>gi|255565039|ref|XP_002523512.1| DNA-directed RNA polymerase III, putative [Ricinus communis]
gi|223537219|gb|EEF38851.1| DNA-directed RNA polymerase III, putative [Ricinus communis]
Length = 112
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG +L+YELP+M + +RF C CPYVC++ESRVKIKRKQ L KKEI+P+FT D
Sbjct: 1 MEFCPTCGVLLRYELPNMGQSARFYCSTCPYVCSIESRVKIKRKQQLIKKEIEPVFTLDD 60
Query: 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
MM+ G +TE TCP C G+A + LQ RSADEP + FY C N+ C W E
Sbjct: 61 MMKGGSETEATCPHCNFGRARFQSLQIRSADEPATTFYFCLNEKCSRVWRE 111
>gi|449489530|ref|XP_004158339.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cucumis sativus]
Length = 112
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQD 59
MEFCPTCG MLQ+ELP+M + SRF CP CPYV +E+RV KIKRKQ L KKE++PI + D
Sbjct: 1 MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVCKIKRKQHLVKKELEPIISDD 60
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M QTE TCP C GKA + ++Q RSADEP + FY C N+NC+ W E
Sbjct: 61 DMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE 111
>gi|388510306|gb|AFK43219.1| unknown [Lotus japonicus]
Length = 111
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 77/110 (70%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCP+C ML++ELP+M SR C CPYVC +E VKIKRKQ L +KEI P+ + D
Sbjct: 1 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M GP TEV CP C H KA Y E+Q RSADEP +IFY C N+ C+H+W E
Sbjct: 61 MKNGPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110
>gi|224120828|ref|XP_002318427.1| predicted protein [Populus trichocarpa]
gi|222859100|gb|EEE96647.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
MEFCPTCG +L+YE P+M + +RF CP CPY ++ESRVKIKRKQ L+KKEI+PIFT +D
Sbjct: 1 MEFCPTCGMLLRYETPNMGQAARFYCPTCPYFASIESRVKIKRKQKLAKKEIEPIFTLED 60
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G +T+ TCP C G+A + ++Q RSADEP + FY C N+ C W E
Sbjct: 61 MKTGGAETDATCPHCNFGRACFQQIQIRSADEPATTFYFCLNEKCGRMWRE 111
>gi|294462028|gb|ADE76569.1| unknown [Picea sitchensis]
Length = 110
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
MEFCPTCG +LQ E P+M + RF CP CPYV +E KI +K L KKE+ +F ++
Sbjct: 1 MEFCPTCGNLLQIEHPYMSQSLRFFCPTCPYVFPIER--KISKKLQLKKKEVDDVFGGEE 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +TE TCP C GKA + ++Q RSADEPMS FY C N C+ RW +
Sbjct: 59 AWKNVDRTEATCPKCSFGKAFFMQIQIRSADEPMSTFYKCCNNQCQFRWRQ 109
>gi|115447857|ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|50251233|dbj|BAD27819.1| putative DNA-directed RNA polymerase III [Oryza sativa Japonica
Group]
gi|50251924|dbj|BAD27861.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113537239|dbj|BAF09622.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|215708708|dbj|BAG93977.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765354|dbj|BAG87051.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 110
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
MEFCP CG +LQ + RF CP CPYVC +++ KI +K L KKE++PIF+ D
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKN--KIVKKARLVKKEVEPIFSDSD 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
AM P+T TCP C++G+A Y ++Q RSADEPMS FY C + C+ W E
Sbjct: 59 AMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 109
>gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
gi|4309697|gb|AAD15481.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|7267434|emb|CAB77946.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|18253033|gb|AAL62443.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|23198220|gb|AAN15637.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332657185|gb|AEE82585.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
Length = 106
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG +L+YE SRF C CPYV N+E RV+IK+KQ L KK I+P+ T+D
Sbjct: 1 MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +TE CP C H KA + +Q RSADEP S FY C C+ W E
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWRE 105
>gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 106
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG +L+YE SRF C CPYV +E RV+IK+KQ L KK I+P+ T+D
Sbjct: 1 MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVAYIERRVEIKKKQLLVKKSIEPVVTKDD 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +TE CP C H KA + +Q RSADEP S FY C C+ W E
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWRE 105
>gi|125540641|gb|EAY87036.1| hypothetical protein OsI_08435 [Oryza sativa Indica Group]
gi|222623425|gb|EEE57557.1| hypothetical protein OsJ_07898 [Oryza sativa Japonica Group]
Length = 106
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
MEFCP CG +LQ + RF CP CPYVC I +K L KKE++PIF+ D
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVC------PIVKKARLVKKEVEPIFSDSD 54
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
AM P+T TCP C++G+A Y ++Q RSADEPMS FY C + C+ W E
Sbjct: 55 AMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 105
>gi|242066406|ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
gi|241934323|gb|EES07468.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
Length = 166
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF-TQD 59
MEFCP CG +LQ + R C CPYVC +++ KI +K L KKE++PIF T D
Sbjct: 57 MEFCPVCGMLLQIDPGTASHRLRLFCSVCPYVCPIQN--KIVKKARLVKKEVEPIFSTAD 114
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M P+T VTC C HG+A + ++Q RSADEPM+ Y C + C+H W E
Sbjct: 115 EMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 165
>gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
gi|297337925|gb|EFH68342.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
Length = 106
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG +L+YE SRF C CPYV +E +V+IK+KQ L KK I+P+ T+D
Sbjct: 1 MEFCPTCGNLLRYE---GSGNSRFFCSTCPYVAYVERQVEIKKKQLLVKKSIEPVVTKDD 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +TE CP C H KA + +Q RSADEP S FY C C W E
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCDFTWRE 105
>gi|212720695|ref|NP_001131695.1| uncharacterized protein LOC100193056 [Zea mays]
gi|194692264|gb|ACF80216.1| unknown [Zea mays]
gi|195653763|gb|ACG46349.1| hypothetical protein [Zea mays]
gi|413923417|gb|AFW63349.1| hypothetical protein ZEAMMB73_646152 [Zea mays]
Length = 110
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF-TQD 59
MEFCP CG +LQ + R CP CPYVC + + KI +K L KKE++PI T D
Sbjct: 1 MEFCPVCGILLQIDPGTGSHRLRLFCPVCPYVCPILN--KIVKKARLVKKEVEPISSTAD 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M P+T VTC C HG+A + ++Q RSADEPM+ Y C + C+H W E
Sbjct: 59 EMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRE 109
>gi|357512455|ref|XP_003626516.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355501531|gb|AES82734.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 108
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 6/107 (5%)
Query: 10 MLQYELPH-----MDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG 64
ML ELP+ P+RF C CPY+C + VKIKR+Q L +K I PI + D + +
Sbjct: 1 MLMLELPNATSHGTSHPTRFYCLTCPYICPIRKEVKIKRRQMLVRKGIDPIISHDEINKN 60
Query: 65 -PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ ++ CP C+H +A YH QTRSADEP +IFY C N+ C+H+W E
Sbjct: 61 KPKADIPCPNCRHPQASYHMEQTRSADEPATIFYKCMNQKCEHQWKE 107
>gi|357485205|ref|XP_003612890.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355514225|gb|AES95848.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 106
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 10 MLQYELPHMDR----PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG- 64
ML ELP+ P+RF C CPY+C +E VKIKR+Q L +K I PI + + +
Sbjct: 1 MLMLELPNSSHDKFHPTRFYCLTCPYICRIEKGVKIKRRQMLVRKGIDPIISHHEINKNK 60
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ +V CP C+H +A YH QTRSADEP +IFY C N+ C H+W E
Sbjct: 61 PKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 106
>gi|168027647|ref|XP_001766341.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682555|gb|EDQ68973.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FCPTC +L E P M RP R+ CP CPYV ++ KI +K L KKE+ + +D
Sbjct: 1 MDFCPTCANLLLVENPSMGRPLRYFCPTCPYVYVVDR--KISKKLKLKKKEVDDVLGGED 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T VTCP C +G+A + ++Q RSADEPM+ FY C N +C HRW E
Sbjct: 59 AWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKE 109
>gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
gi|9665148|gb|AAF97332.1|AC023628_13 Similar to DNA-directed RNA polymerase subunit M [Arabidopsis
thaliana]
gi|30793865|gb|AAP40385.1| unknown protein [Arabidopsis thaliana]
gi|30794074|gb|AAP40481.1| unknown protein [Arabidopsis thaliana]
gi|110738907|dbj|BAF01375.1| hypothetical protein [Arabidopsis thaliana]
gi|332189133|gb|AEE27254.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
Length = 106
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCPTCG +L+YE SRF C CPYV ++ +V+IK+KQ L KK I+ + T+D
Sbjct: 1 MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +TE CP C H KA + +Q RSADEP S FY C C+ W E
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWRE 105
>gi|323453395|gb|EGB09267.1| hypothetical protein AURANDRAFT_24870 [Aureococcus anophagefferens]
Length = 112
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS---RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FCP GT+LQ + P+ RF CP CPY+ + K P ++K+I I
Sbjct: 1 MQFCPYDGTLLQVHIFAQGTPASELRFFCPLCPYI--HSPKKKHALDVPTTRKKIDDIMG 58
Query: 58 QDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA E +T VTCPAC HG+A + +LQ RSADEPM+ F+ CA C HRWNE
Sbjct: 59 GDAAWENVDRTAVTCPACSHGEAFFMQLQIRSADEPMTTFFKCAKTGCGHRWNE 112
>gi|161610990|gb|ABX75173.1| RNA polymerase III 12.5 kDa polypeptide [Caenorhabditis brenneri]
gi|341900172|gb|EGT56107.1| hypothetical protein CAEBREN_07334 [Caenorhabditis brenneri]
Length = 108
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG LQ E D+ +RFSCPACPYVC + V + L K+I +
Sbjct: 2 LTFCPECGCTLQIE--QGDQCNRFSCPACPYVCPVTHSVSSRIYPKL--KDIDDVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T+ CP C H +A + +LQTRSADEPM+IFY CAN C HRW E
Sbjct: 58 AWENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCANNACAHRWKE 108
>gi|308456771|ref|XP_003090804.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
gi|308260535|gb|EFP04488.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
Length = 108
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +LQ E D+ RFSC ACPYVC + S + + L K+I +
Sbjct: 2 LTFCPECGCVLQVEAG--DQCMRFSCSACPYVCPITSTISSRIYPKL--KDIDDVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T+ CP C H +A + +LQTRSADEPM+IFY CA+ +C HRW E
Sbjct: 58 AWENAQITDERCPLCAHERAYFMQLQTRSADEPMTIFYRCADNSCAHRWKE 108
>gi|17544244|ref|NP_500076.1| Protein RPC-11 [Caenorhabditis elegans]
gi|373220190|emb|CCD72590.1| Protein RPC-11 [Caenorhabditis elegans]
Length = 108
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +LQ E ++ RFSCPACPYVC + V R P K + A
Sbjct: 2 LTFCPECGCVLQIE--SGEQCMRFSCPACPYVCPVTQTVT-SRIYPKLKDIDDVLGGPGA 58
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T+ TCP C HG+A + +LQTRSADEP +IFY CA+ C HRW +
Sbjct: 59 WANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
>gi|268553695|ref|XP_002634834.1| Hypothetical protein CBG13943 [Caenorhabditis briggsae]
Length = 108
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +LQ E ++ +FSC ACPYVC + + + + L K+I +
Sbjct: 2 LTFCPECGCVLQIETG--EQCQQFSCSACPYVCPIVATISSRIYPKL--KDIDDVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T+ CP C H +A + +LQTRSADEPM+IFY CAN +C HRW E
Sbjct: 58 AWENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCANNSCAHRWKE 108
>gi|159483491|ref|XP_001699794.1| predicted protein [Chlamydomonas reinhardtii]
gi|158281736|gb|EDP07490.1| predicted protein [Chlamydomonas reinhardtii]
Length = 109
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
+ +CPTC ML EL + R+ C CPYV N++ KI + PL++K++ + +D
Sbjct: 2 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGED 59
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ TCP C + +A + E+QTRSADEP ++F+ C C HRW E
Sbjct: 60 AWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 108
>gi|170061184|ref|XP_001866125.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
gi|167879526|gb|EDS42909.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
Length = 108
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E RFSC CPY+C ++ ++ + L KE+ + A
Sbjct: 2 LMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKL--KEVDHVMGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CPAC H +A + ++QTRSADEPM+ FY CAN C H W +
Sbjct: 58 AWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANPVCGHNWRD 108
>gi|113195665|ref|NP_001037832.1| polymerase (RNA) III (DNA directed) polypeptide K [Ciona
intestinalis]
gi|198420477|ref|XP_002119150.1| PREDICTED: hypothetical protein [Ciona intestinalis]
gi|92081584|dbj|BAE93339.1| RNA polymerase [Ciona intestinalis]
Length = 108
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E ++ RF+CP CPYV N+ ++ K+ L K + + A
Sbjct: 2 LLFCPTCGNLLTVE--EGNQCYRFACPTCPYVHNITQKISSKKFPKL--KAVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C+H +A + ++QTRSADEPM+IFY C + C H+W E
Sbjct: 58 AWENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108
>gi|410902675|ref|XP_003964819.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Takifugu rubripes]
Length = 108
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQRCMRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|157118651|ref|XP_001659197.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Aedes aegypti]
gi|108883259|gb|EAT47484.1| AAEL001400-PA [Aedes aegypti]
Length = 108
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E RFSC CPY+C ++ ++ + L KE+ + A
Sbjct: 2 LMFCPTCGNLLLVE--EGTDSLRFSCNTCPYICKIKRKISTRIYPKL--KEVDHVMGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CPAC H +A + ++QTRSADEPM+ FY C N C H W E
Sbjct: 58 AWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNPTCGHNWRE 108
>gi|405977278|gb|EKC41737.1| DNA-directed RNA polymerase III subunit RPC10 [Crassostrea gigas]
Length = 108
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E RF+C CPYV N++ ++ ++ L KE+ + A
Sbjct: 2 LTFCPTCANVLVVE--EGQNCYRFACNTCPYVQNIQRKIASRKYPKL--KEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE TCP C H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTEETCPKCSHNRAFFMQIQTRSADEPMTTFYKCCNMACAHRWRD 108
>gi|21956651|gb|AAM83406.1| POLR3K [Sphoeroides nephelus]
Length = 108
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C HRW E
Sbjct: 58 AWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108
>gi|148237221|ref|NP_001083658.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus laevis]
gi|38511445|gb|AAH61683.1| MGC68582 protein [Xenopus laevis]
Length = 108
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNINRKV-TSRKYP-KLKEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGHRWRD 108
>gi|302823870|ref|XP_002993583.1| hypothetical protein SELMODRAFT_137292 [Selaginella moellendorffii]
gi|300138595|gb|EFJ05358.1| hypothetical protein SELMODRAFT_137292 [Selaginella moellendorffii]
Length = 107
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
MEFCPTC ++L E H R R+ CP C Y+ ++ +KI + PL KE+ + +D
Sbjct: 1 MEFCPTCSSLLLVE--HAGR-LRYFCPTCAYIFGVD--LKISKPIPLKNKEVDDVMGGED 55
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T VTC C +G A + +Q RSADEP + FY C N NC RW E
Sbjct: 56 AWKNCDRTPVTCAKCNYGHAYFMLVQIRSADEPSTAFYRCGNPNCSFRWRE 106
>gi|242011387|ref|XP_002426432.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510537|gb|EEB13694.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 108
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E +R RF+C CPY+ N+ +V + L KE+ + A
Sbjct: 2 LLFCPTCANVLGVE--EGERSLRFACHTCPYIFNIARKVSSRYYPRL--KEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108
>gi|320164758|gb|EFW41657.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 112
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCPTC +L R + F C CPYV ++S + R+ ++KKE+ + ++
Sbjct: 2 LVFCPTCSNLLVAGTYQDSRENVMFRCATCPYVYQVQSMIGNMRE--MNKKEVDDVMGRE 59
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + QT+ CP C H KA Y ++QTRSADEPM+IF C+N CKH W
Sbjct: 60 SDWDNVDQTDANCPKCGHTKAYYRQVQTRSADEPMTIFLRCSNMECKHNW 109
>gi|47220062|emb|CAG12210.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|62751522|ref|NP_001015803.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|62858741|ref|NP_001016313.1| uncharacterized protein LOC549067 [Xenopus (Silurana) tropicalis]
gi|58477102|gb|AAH89759.1| polymerase (RNA) III (DNA directed) polypeptide K [Xenopus
(Silurana) tropicalis]
gi|89266864|emb|CAJ83854.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|213625552|gb|AAI70845.1| polr3k protein [Xenopus (Silurana) tropicalis]
Length = 108
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNVNRKV-TSRKYP-KLKEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108
>gi|348509155|ref|XP_003442117.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oreochromis niloticus]
Length = 108
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTPETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|302058278|ref|NP_057394.2| DNA-directed RNA polymerase III subunit RPC10 [Homo sapiens]
gi|116242768|sp|Q9Y2Y1.2|RPC10_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III 12.5 kDa subunit; Short=RPC12.5;
AltName: Full=RNA polymerase III subunit C11;
Short=HsC11p; Short=RPC11; Short=hRPC11
gi|14336676|gb|AAK61210.1|AE006462_2 RNA polymerase III subunit CII [Homo sapiens]
gi|66350794|emb|CAI95605.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
Length = 108
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RFSC CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T +CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|302765431|ref|XP_002966136.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
gi|300165556|gb|EFJ32163.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
Length = 107
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF-TQD 59
MEFCPTC ++L E H R R+ CP C Y+ N++ +I ++ PL KE+ I ++D
Sbjct: 1 MEFCPTCSSLLLVE--HAAR-LRYFCPTCAYIYNIDH--EITKRIPLKNKEMDDILGSED 55
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T +TC C H A + +Q RSADEP + FY C N +C +RW E
Sbjct: 56 AWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNPDCSYRWRE 106
>gi|50540172|ref|NP_001002553.1| DNA-directed RNA polymerase III subunit RPC10 [Danio rerio]
gi|49903001|gb|AAH76249.1| Polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio]
Length = 108
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQRCFRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108
>gi|156548560|ref|XP_001605743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Nasonia vitripennis]
Length = 108
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPY+ N+ RV + L KE+ + A
Sbjct: 2 LLFCPTCGNVLHVEEGTVSM--RFACNTCPYISNINRRVSSRTYPKL--KEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C + +A + ++QTRSADEPM+ FY C N C H W E
Sbjct: 58 AWENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCNPQCGHNWRE 108
>gi|302830955|ref|XP_002947043.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
gi|300267450|gb|EFJ51633.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
Length = 109
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
+ +CPTC ML EL + R+ C CPYV +++ KI + PL++K++ + D
Sbjct: 2 ITYCPTCANMLLVELTEYSKELRYFCQCCPYVYSIDK--KISKMAPLARKQVDDVLGGDD 59
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ TC C + +A + E+QTRSADEP ++F+ C C +RW E
Sbjct: 60 AWKNVAKTDATCSKCAYHQAYFMEIQTRSADEPATLFFKCV--QCGYRWRE 108
>gi|289739683|gb|ADD18589.1| RNA polymerase III subunit C11 [Glossina morsitans morsitans]
Length = 108
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L E + RFSC CPY+ N+ + K L KE+ + A
Sbjct: 2 LLFCPNCSNILLVEQGVSNY--RFSCNTCPYIFNISKKTSTKTFPRL--KEVDHVMGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CPAC H KA + ++QTRSADEPM+ FY CAN+ C H W +
Sbjct: 58 AWENVDSTDADCPACSHKKAYFMQMQTRSADEPMTTFYKCANQLCGHNWRD 108
>gi|312375718|gb|EFR23030.1| hypothetical protein AND_28749 [Anopheles darlingi]
Length = 108
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E RFSC CPY+C ++ ++ + L KE+ + A
Sbjct: 2 LMFCPTCGNLLLVE--ESTDSLRFSCNTCPYICKIKRKISTRIYPKL--KEVDHVMGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CPAC + +A + ++QTRSADEPM+ FY C + C H W +
Sbjct: 58 AWENVDSTDAVCPACGNARAYFMQMQTRSADEPMTTFYKCCEQTCGHLWRD 108
>gi|345802468|ref|XP_854405.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Canis
lupus familiaris]
gi|410985427|ref|XP_003999024.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Felis
catus]
gi|4877775|gb|AAD31424.1|AF126531_1 putative DNA-directed RNA polymerase III C11 subunit [Homo sapiens]
gi|6580760|gb|AAF18268.1|AF051316_1 RNA polymerase III subunit [Homo sapiens]
gi|12001960|gb|AAG43123.1|AF060223_1 My010 protein [Homo sapiens]
gi|15080355|gb|AAH11932.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|90653002|gb|ABD95903.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Homo
sapiens]
gi|119606285|gb|EAW85879.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|123999444|gb|ABM87280.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|157929168|gb|ABW03869.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|306921315|dbj|BAJ17737.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
Length = 108
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T +CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|302800796|ref|XP_002982155.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
gi|300150171|gb|EFJ16823.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
Length = 107
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
MEFCPTC ++L E H R R+ CP C Y+ N++ +I ++ PL KE+ I +D
Sbjct: 1 MEFCPTCSSLLLVE--HAAR-LRYFCPTCAYIYNIDH--EITKRIPLKNKEMDDILGGED 55
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T +TC C H A + +Q RSADEP + FY C N +C +RW E
Sbjct: 56 AWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNPDCSYRWRE 106
>gi|432868046|ref|XP_004071384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oryzias latipes]
Length = 108
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V ++ L KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCLRFACNTCPYVHNVTRKVNYRKYPKL--KEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C+H +A + ++QTRSADEPM+ FY C N C +RW +
Sbjct: 58 AWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGNRWRD 108
>gi|190402235|gb|ACE77649.1| DNA-directed RNA polymerase III subunit RPC10 (predicted) [Sorex
araneus]
Length = 108
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPSCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|332017465|gb|EGI58188.1| DNA-directed RNA polymerase III subunit RPC10 [Acromyrmex
echinatior]
Length = 110
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L++ +RF+CP CPY+ + SR+ R K+ I +
Sbjct: 3 LRFCPFCANLLRFR--EHSSGNRFACPTCPYIYPIRSRIS-SRIYFTGKERADIIDAEST 59
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
M T+ CP C H +A + +LQTRSADEPM++FY C N C H W
Sbjct: 60 WMGVDSTDERCPKCSHPRAYFKQLQTRSADEPMTLFYRCCNHECAHTW 107
>gi|74217136|dbj|BAC40210.2| unnamed protein product [Mus musculus]
Length = 107
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 1 MLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 57 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 107
>gi|354500619|ref|XP_003512396.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cricetulus griseus]
gi|344254447|gb|EGW10551.1| DNA-directed RNA polymerase III subunit RPC10 [Cricetulus griseus]
Length = 108
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPSCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|348585383|ref|XP_003478451.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cavia porcellus]
gi|351711232|gb|EHB14151.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 108
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|301096910|ref|XP_002897551.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262107011|gb|EEY65063.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 105
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP+CG +L E P D RF C CPY+ + K+++K PL +K++ + D
Sbjct: 1 MHFCPSCGNILLVE-PDSD-GMRFFCQTCPYLFQIND--KVEKKVPLQRKQVDDVLGGDE 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QTE CP C++ KA + ++Q RSADEP + FY C CK +WN+
Sbjct: 57 AWENVDQTETRCPHCEYNKAYFMQIQIRSADEPSTTFYKCV--QCKKQWND 105
>gi|238231633|ref|NP_001154002.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
gi|209736212|gb|ACI68975.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|209737866|gb|ACI69802.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|225703324|gb|ACO07508.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
Length = 108
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 108
>gi|307212490|gb|EFN88221.1| DNA-directed RNA polymerase III subunit RPC10 [Harpegnathos
saltator]
Length = 109
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L E RF+C CP++ N+ KI + +KE +++ D+
Sbjct: 3 LRFCPKCSDLLSVE--QGPTGLRFACSTCPFIHNITH--KITTRTYYKRKEQVDVYSSDS 58
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T+ CP C H +A Y +LQTRSADEPM+IFY C + C H W E
Sbjct: 59 AWEGVDATDERCPRCSHPRAYYTQLQTRSADEPMTIFYKCCDPKCMHSWRE 109
>gi|344292282|ref|XP_003417857.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Loxodonta africana]
Length = 108
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAELCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNVQCGHRWRD 108
>gi|225717070|gb|ACO14381.1| DNA-directed RNA polymerase III subunit RPC10 [Esox lucius]
Length = 108
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGHRWRD 108
>gi|219121449|ref|XP_002185948.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
gi|209582797|gb|ACI65418.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
Length = 111
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M FCP GT+LQ ++ P S F C CPY C++++ +K P +K + I
Sbjct: 1 MWFCPLDGTLLQVQIRSGAVPAENSFFYCSTCPYSCSIDAPRTVK--TPTKRKVVDDILG 58
Query: 58 QDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A E +T CPAC H +A + ++Q RSADEPMSIFY C C H+WN+
Sbjct: 59 GAAAWENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKCV--QCSHQWND 110
>gi|318086250|ref|NP_001188119.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
gi|308322041|gb|ADO28158.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus furcatus]
gi|308322895|gb|ADO28585.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
Length = 108
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLVVE--EGQRCYRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGSA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSPQCGHRWRD 108
>gi|298714200|emb|CBJ27336.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 108
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCPT G++L E +RF C CPY+ ME KI RK L KK + I D
Sbjct: 1 MLFCPTDGSLLMVESGPQGW-TRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDD 59
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ TCP C + +A + +Q RSADEPM+ FY C NCK RW E
Sbjct: 60 AWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCT--NCKQRWKE 108
>gi|13385394|ref|NP_080177.1| DNA-directed RNA polymerase III subunit RPC10 [Mus musculus]
gi|62079253|ref|NP_001014281.1| DNA-directed RNA polymerase III subunit RPC10 [Rattus norvegicus]
gi|281183128|ref|NP_001162283.1| DNA-directed RNA polymerase III subunit RPC10 [Papio anubis]
gi|114660088|ref|XP_001150299.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
troglodytes]
gi|126335251|ref|XP_001364724.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Monodelphis domestica]
gi|296219167|ref|XP_002755763.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Callithrix jacchus]
gi|311251657|ref|XP_003124725.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Sus
scrofa]
gi|332239931|ref|XP_003269145.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Nomascus
leucogenys]
gi|395515580|ref|XP_003761979.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Sarcophilus harrisii]
gi|397476074|ref|XP_003809436.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
paniscus]
gi|426380499|ref|XP_004056900.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Gorilla gorilla gorilla]
gi|46397018|sp|Q9CQZ7.1|RPC10_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|12836878|dbj|BAB23846.1| unnamed protein product [Mus musculus]
gi|12846620|dbj|BAB27239.1| unnamed protein product [Mus musculus]
gi|26327027|dbj|BAC27257.1| unnamed protein product [Mus musculus]
gi|58477408|gb|AAH89990.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus
norvegicus]
gi|148675519|gb|EDL07466.1| polymerase (RNA) III (DNA directed) polypeptide K [Mus musculus]
gi|149033881|gb|EDL88664.1| rCG38533 [Rattus norvegicus]
gi|160904110|gb|ABX52097.1| polymerase III polypeptide K, 12.3 kDa (predicted) [Papio anubis]
gi|167427355|gb|ABZ80330.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callithrix jacchus]
gi|169246090|gb|ACA51066.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callicebus moloch]
gi|183396438|gb|ACC62113.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Rhinolophus ferrumequinum]
gi|380788615|gb|AFE66183.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|383411311|gb|AFH28869.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|384943952|gb|AFI35581.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|410220334|gb|JAA07386.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410265268|gb|JAA20600.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410290868|gb|JAA24034.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410350475|gb|JAA41841.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|417395769|gb|JAA44927.1| Putative dna-directed rna polymerase iii subunit rpc10 [Desmodus
rotundus]
gi|431906774|gb|ELK10895.1| DNA-directed RNA polymerase III subunit RPC10 [Pteropus alecto]
Length = 108
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|346470135|gb|AEO34912.1| hypothetical protein [Amblyomma maculatum]
Length = 108
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E RF+C CPYVCN++ ++ RK P K++ + A
Sbjct: 2 LLFCPTCSNILIVE--EGSECFRFACNTCPYVCNIKQKMS-SRKYP-RLKDVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C N C H+W +
Sbjct: 58 AWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNPQCGHQWRD 108
>gi|225712014|gb|ACO11853.1| DNA-directed RNA polymerase III subunit RPC10 [Lepeophtheirus
salmonis]
Length = 108
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +L D RF+C CPY N+ SR+ + L KE+ + A
Sbjct: 2 LMFCPNCGNILGVVEGVTDSCMRFACETCPYKRNVVSRLSDRVYPKL--KEVDDVLGGSA 59
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE TCP C H +A + ++QTRSADEPM+ FY C +C HRW E
Sbjct: 60 AWENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCV--SCGHRWRE 108
>gi|226822864|gb|ACO83096.1| DNA directed RNA polymerase III polypeptide K (predicted) [Dasypus
novemcinctus]
Length = 108
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V ++ L KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTSRKYPKL--KEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|388581956|gb|EIM22262.1| hypothetical protein WALSEDRAFT_17028 [Wallemia sebi CBS 633.66]
Length = 110
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCPTC ML +L +++ C CPY M + + K L +K++ + +D
Sbjct: 1 MLFCPTCSNMLISQLDEESTNNKWVCAICPYQFPMTKQFNTRHK--LKRKQVDDVLGGED 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP C +G+A + ++Q RSADEPM+ FY C N C ++W E
Sbjct: 59 SWKNVDQTSAECPKCSNGRAFFMQIQIRSADEPMTTFYRCTNAKCANQWRE 109
>gi|296473638|tpg|DAA15753.1| TPA: DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
Length = 108
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|395835629|ref|XP_003790779.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 108
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCYRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|363739487|ref|XP_001231486.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Gallus
gallus]
Length = 108
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +L E R RF+C CPYV N+ +V ++ L KE+ + A
Sbjct: 2 LLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKVSSRKYPRL--KEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|229367554|gb|ACQ58757.1| DNA-directed RNA polymerase III subunit RPC10 [Anoplopoma fimbria]
Length = 108
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C H +A + ++QTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGHRWRD 108
>gi|260829971|ref|XP_002609935.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
gi|229295297|gb|EEN65945.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
Length = 108
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
+ FCPTC +L E ++ RF C CPY+ N+ ++ K+ L KE+ + +
Sbjct: 2 LLFCPTCANLLVAE--EGEKCYRFGCQTCPYIYNITHKISFKKYPKL--KEVDDVLGGPE 57
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A TE CP C+H +A + ++QTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGHRWKD 108
>gi|348679513|gb|EGZ19329.1| hypothetical protein PHYSODRAFT_491179 [Phytophthora sojae]
Length = 105
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP+CG +L E P D RF C CPY+ + K+++K PL +K++ + D
Sbjct: 1 MHFCPSCGNILLVE-PDSD-GMRFFCQTCPYLFQIND--KVEKKVPLQRKQVDDVLGGDE 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QTE CP C+ KA + ++Q RSADEP + FY C CK +WN+
Sbjct: 57 AWENVDQTETRCPHCEFNKAYFMQIQIRSADEPSTTFYKCV--QCKKQWND 105
>gi|197128230|gb|ACH44728.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
gi|197128231|gb|ACH44729.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKV-TSRKYP-RLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRWRD 108
>gi|195430000|ref|XP_002063045.1| GK21590 [Drosophila willistoni]
gi|194159130|gb|EDW74031.1| GK21590 [Drosophila willistoni]
Length = 108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+CG +L E SC CPYV + ++ K L KE+ + A
Sbjct: 4 FCPSCGNLLIIEED--TNSHHLSCHTCPYVSKIRGKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CPAC H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 60 ENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
>gi|340372557|ref|XP_003384810.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Amphimedon queenslandica]
Length = 108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPS--RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
FCP CG +L E + PS RF+C CPYV N+ +V L KE+ + A
Sbjct: 4 FCPVCGNLLTVE----EGPSCKRFACNTCPYVQNITQKVASYTFPRL--KEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CP C H KA + ++QTRSADEPM+ FY C + +C HRW E
Sbjct: 58 AWENVDNTDEKCPKCSHPKAYFMQIQTRSADEPMTTFYKCCSPSCSHRWKE 108
>gi|291223913|ref|XP_002731949.1| PREDICTED: DNA directed RNA polymerase III polypeptide K-like
[Saccoglossus kowalevskii]
Length = 108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E + RFSC CP++ N+ ++ K+ L KE+ + A
Sbjct: 2 LMFCPTCANVLVVE--EGPKSYRFSCNTCPFIHNVTRKISSKKYPKL--KELDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T TCP C H +A + ++QTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAETCPKCGHDRAYFMQIQTRSADEPMTTFYRCCHPQCGHRWKD 108
>gi|12862220|dbj|BAB32384.1| unnamed protein product [Mus musculus]
Length = 108
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L + R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLI--VVEGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|237830299|ref|XP_002364447.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|211962111|gb|EEA97306.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|221487521|gb|EEE25753.1| RNA polymerase III, putative [Toxoplasma gondii GT1]
gi|221507317|gb|EEE32921.1| RNA polymerase III, putative [Toxoplasma gondii VEG]
Length = 106
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLS-KKEIQPIFTQDAM 61
FCPTC ML L + +F C CPYV N++ K+ RK PL+ KK +P+
Sbjct: 4 FCPTCHNML---LVRQEVTMQFHCRTCPYVFNIKE--KLTRKMPLTPKKADEPLDESQEA 58
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G + +CP C H +A ++E+Q RSADEPM+ FY C NC+ RW E
Sbjct: 59 ARGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCC--NCRFRWRE 105
>gi|195401703|ref|XP_002059452.1| GJ18820 [Drosophila virilis]
gi|194142458|gb|EDW58864.1| GJ18820 [Drosophila virilis]
Length = 108
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP+CG +L E D S RF+C CP++ ++ ++ K L KE+ +
Sbjct: 2 LFFCPSCGNILIIE---EDTSSHRFTCNTCPFISKIKRKISTKTYPRL--KEVDHVLGGV 56
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A E T+ CPAC H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 57 AAWENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
>gi|401411477|ref|XP_003885186.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
gi|325119605|emb|CBZ55158.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
Length = 106
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLS-KKEIQPIFTQDAM 61
FCPTC ML L + +F C CPYV N++ K+ RK PL+ KK +P+
Sbjct: 4 FCPTCHNML---LVRQEVTMQFHCQTCPYVFNIKE--KLTRKLPLTPKKADEPLDEHQEA 58
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G + +CP C H +A ++E+Q RSADEPM+ FY C NC+ RW E
Sbjct: 59 SRGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCC--NCRFRWRE 105
>gi|440790887|gb|ELR12150.1| RNA polymerase III, putative [Acanthamoeba castellanii str. Neff]
Length = 107
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L E +R RF C CPYV ++ KI +K L +K++ I +
Sbjct: 4 FCPYCANVLLVEAGPENRL-RFFCNTCPYVFGIDQ--KISKKAALERKQVDDILGDEVFE 60
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
QTE CP C H +A + +LQTRSADEP S FY C C +W
Sbjct: 61 NAQQTEAKCPECGHDRANFFQLQTRSADEPSSTFYRCM--KCASKW 104
>gi|301769553|ref|XP_002920195.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Ailuropoda melanoleuca]
gi|281341538|gb|EFB17122.1| hypothetical protein PANDA_008903 [Ailuropoda melanoleuca]
Length = 108
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRWRD 108
>gi|444727237|gb|ELW67738.1| DNA-directed RNA polymerase III subunit RPC10 [Tupaia chinensis]
Length = 108
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPSCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108
>gi|197129923|gb|ACH46421.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPACGNVLVAE--EGPRCHRFACTTCPYVRNVTRKV-TSRKYP-RLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + + QTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRWRD 108
>gi|209731118|gb|ACI66428.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 108
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTCG +L E + RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPTCGNVLIVE--EGQKCYRFACNTCPYVHNITRKVN-NRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + ++QTRSADE M+ FY C N C HRW +
Sbjct: 58 AWENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGHRWRD 108
>gi|355712780|gb|AES04463.1| polymerase III polypeptide K, 12.3 kDa [Mustela putorius furo]
Length = 113
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 8 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 63
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW
Sbjct: 64 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRW 112
>gi|442753419|gb|JAA68869.1| Putative rna polymerase iii [Ixodes ricinus]
Length = 108
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E RF+C CPYV N+ +VK+ ++ K++ + A
Sbjct: 2 LLFCPTCANILIVE--QGLECFRFACNTCPYVHNI--KVKMSNRKYPRLKDVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C N+ C H+W E
Sbjct: 58 AWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 108
>gi|390603169|gb|EIN12561.1| hypothetical protein PUNSTDRAFT_97332 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 106
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + ++++C CPY M SR K+KRK E+ +
Sbjct: 1 MLFCPTCANLLV--ISQETGYNKWACNTCPYEFPITKQMTSRTKLKRK------EVDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M E T TCP C HG+A +++LQ RSADEPM+ FY CA C ++W E
Sbjct: 53 GGDQMWEHADATSATCPKCDHGRAYFYQLQIRSADEPMTTFYRCA--ACGNQWRE 105
>gi|241012140|ref|XP_002405456.1| RNA polymerase III [Ixodes scapularis]
gi|215491748|gb|EEC01389.1| RNA polymerase III [Ixodes scapularis]
Length = 109
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E RF+C CPYV N+++++ RK P K++ + A
Sbjct: 3 LLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMS-NRKYP-RLKDVDDVLGGAA 58
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C N+ C H+W E
Sbjct: 59 AWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109
>gi|284005380|ref|NP_001164882.1| DNA-directed RNA polymerase III subunit RPC10 [Oryctolagus
cuniculus]
gi|218157235|gb|ACK58460.1| DNA-directed RNA polymerase III subunit RPC10 (predicted)
[Oryctolagus cuniculus]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108
>gi|195119552|ref|XP_002004295.1| GI19850 [Drosophila mojavensis]
gi|193909363|gb|EDW08230.1| GI19850 [Drosophila mojavensis]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP+CG +L E D S RF+C CP++ ++ ++ K L KE+ +
Sbjct: 2 LFFCPSCGNILIIE---EDTSSHRFTCNTCPFISKIKRKITTKTYPRL--KEVDHVLGGV 56
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A E T+ CP+C H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 57 AAWENVDSTDAECPSCSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
>gi|195486786|ref|XP_002091654.1| GE13781 [Drosophila yakuba]
gi|194177755|gb|EDW91366.1| GE13781 [Drosophila yakuba]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+CG +L E RF+C CPY+ + R KI K KE+ + A
Sbjct: 4 FCPSCGNILIIEED--TNCHRFTCNTCPYISKI--RRKISAKTFPRLKEVDHVLGGKAAW 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CP C H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 60 ENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>gi|410812209|gb|ACQ41870.2| MIP03842p1 [Drosophila melanogaster]
Length = 117
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+CG +L E RF+C CPY+ + R KI K KE+ + A
Sbjct: 11 LFFCPSCGNILIIEED--TNCHRFTCNTCPYISKI--RRKISTKTFPRLKEVDHVLGGKA 66
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CP C H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 67 AWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 117
>gi|426254133|ref|XP_004020739.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Ovis
aries]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGPRCHRFACNTCPYVHNVTRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRWRD 108
>gi|78707272|ref|NP_001027443.1| CG33785 [Drosophila melanogaster]
gi|195585169|ref|XP_002082362.1| GD25260 [Drosophila simulans]
gi|71911686|gb|AAM68394.2| CG33785 [Drosophila melanogaster]
gi|194194371|gb|EDX07947.1| GD25260 [Drosophila simulans]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+CG +L E RF+C CPY+ + R KI K KE+ + A
Sbjct: 2 LFFCPSCGNILIIEED--TNCHRFTCNTCPYISKI--RRKISTKTFPRLKEVDHVLGGKA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CP C H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 58 AWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>gi|194881659|ref|XP_001974939.1| GG20841 [Drosophila erecta]
gi|190658126|gb|EDV55339.1| GG20841 [Drosophila erecta]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+CG +L E RF+C CPY+ + R KI K KE+ + A
Sbjct: 4 FCPSCGNILIIEED--TNCHRFTCNTCPYISKI--RRKISAKTFPRLKEVDHVLGGKAAW 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T+ CP C H +A + ++QTRSADEPM+ FY C N C H W +
Sbjct: 60 ENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKCCNHECNHTWRD 108
>gi|325187761|emb|CCA22306.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 105
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP+C +L E P+ + RF C CPY+ +ESR I++ L +K++ + D
Sbjct: 1 MHFCPSCANLLLVE-PNSE-GMRFFCQTCPYLYQIESR--IEKHVQLQRKQVDDVLGGDE 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QTEV CP C+H A + ++Q RSADEP + FY C CK +WN+
Sbjct: 57 AWDNVDQTEVRCPHCEHNHAYFMQIQIRSADEPSTTFYKCV--QCKKQWND 105
>gi|328773726|gb|EGF83763.1| hypothetical protein BATDEDRAFT_8263 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +L + + + C +CPY+C +E + ++ ++K++ +F +
Sbjct: 1 MYFCPQCANLLLIQAGN--EGNELFCQSCPYICRVEK--SLNKRLVFTRKDVDDVFGGEG 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QT+ TCP C+H +A + ++Q RSADEPMSIF+ C C ++W E
Sbjct: 57 SWENVDQTDATCPKCEHSRAFFMQIQIRSADEPMSIFFRCC--KCANQWRE 105
>gi|114051261|ref|NP_001040082.1| DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
gi|109893822|sp|Q2M2S7.1|RPC10_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|85057031|gb|AAI11668.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Bos
taurus]
Length = 108
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P K+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYPKLKEVDDELGGAAA 58
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T CP C+H +A + +LQTR ADEPM+ FY C N C HRW +
Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
>gi|36938592|gb|AAQ86835.1| RNA polymerase III [Ixodes scapularis]
Length = 108
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L E RF+C CPYV N+++++ RK P K++ + A
Sbjct: 2 LLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMS-NRKYP-RLKDVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C N+ C H+W +
Sbjct: 58 AWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108
>gi|312087389|ref|XP_003145453.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
gi|307759383|gb|EFO18617.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
Length = 108
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG+ LQ E +F+C CPYV + +K + L K++ +
Sbjct: 2 LLFCPECGSSLQVE--EGSNCYQFTCHNCPYVQPITKLIKSRYYPKL--KDLDEVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T+ CP C +A + +LQTRSADEPM++FY CAN C HRW E
Sbjct: 58 AWENAQITDERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
>gi|156356304|ref|XP_001623866.1| predicted protein [Nematostella vectensis]
gi|156210604|gb|EDO31766.1| predicted protein [Nematostella vectensis]
Length = 108
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C +L E RF+C CPYV N+ +V K+ L KE+ + +
Sbjct: 2 LLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIAKKVSSKKYPKL--KEVDDVLGGKS 59
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C H +A + ++QTRSADEPM+ FY C +C +RW E
Sbjct: 60 AWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCC--SCGNRWKE 108
>gi|427786159|gb|JAA58531.1| Putative rna polymerase iii subunit c11 [Rhipicephalus pulchellus]
Length = 108
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC +L + RF+C CPYV N++ ++ RK P K++ + A
Sbjct: 2 LLFCPTCSNILIVQ--ESGNCYRFACNTCPYVHNIKQKMS-NRKYP-RLKDVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE CP C HG+A + ++QTRSADEPM+ FY C + C H+W +
Sbjct: 58 AWENVDSTEEKCPKCSHGRAYFMQIQTRSADEPMTTFYKCCSPQCGHQWRD 108
>gi|391345184|ref|XP_003746871.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Metaseiulus occidentalis]
Length = 108
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML E +F CP CPYV + + KR P K + + A
Sbjct: 2 LLFCPRCANMLSAE--EGSEAFKFVCPTCPYVYQIRQCIS-KRTYPRLKPIDDILGSTAA 58
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
TE CP C+H +A + ++QTRSADEPM+ FY C N C H+W E
Sbjct: 59 WANVDSTEEACPKCEHPRAFFRQMQTRSADEPMTTFYKCCNMKCNHQWKE 108
>gi|300176670|emb|CBK24335.2| unnamed protein product [Blastocystis hominis]
Length = 107
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCPTCG +L E RF C CPYV ++ V + L +KE++ + A
Sbjct: 1 MYFCPTCGCLLLVETG--TGYLRFFCSTCPYVADVTGIVS--SRLDLKRKEVEDVLGGAA 56
Query: 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E P+T CP C+H A + ++Q RSADEPM+ FY CA NC+ W++
Sbjct: 57 QWENAPKTAARCPYCEHEVAYFQQIQIRSADEPMTTFYRCA--NCEKIWSD 105
>gi|150865882|ref|XP_001385273.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
gi|149387138|gb|ABN67244.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
Length = 111
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF CP CPY + +RK+ L +KE+ + D
Sbjct: 2 LSFCPNCSNMLLISAGD-DGCNRFYCPTCPYEFKINGLSMFERKK-LYRKEVDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C NC H+W E
Sbjct: 60 AWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCV--NCGHKWKE 110
>gi|324544072|gb|ADY49673.1| DNA-directed RNA polymerase III subunit RPC10 [Ascaris suum]
Length = 108
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG LQ E +FSC CPY+ + +K + L K++ + +
Sbjct: 2 LLFCPECGASLQIE--EGQNCLQFSCHNCPYIQPITKLIKSRVYPKL--KDLDEVLGGPS 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T+ CP C +A + +LQTRSADEPM++FY CAN C HRW E
Sbjct: 58 AWENAQITDERCPRCGGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
>gi|291405015|ref|XP_002719011.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide K-like
[Oryctolagus cuniculus]
Length = 152
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP CG L E R RF+C CPYV N+ +V I +K P KE+ + A
Sbjct: 48 FCPGCGNGLIME--EGQRCDRFACNTCPYVHNITRKV-INQKYP-KLKEVDNMLGGAAAW 103
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSAD+PM+ FY C + C HRW +
Sbjct: 104 ENVDSTAEPCPKCEHPRAYFMQLQTRSADKPMTTFYKCCSPQCGHRWRD 152
>gi|195029411|ref|XP_001987566.1| GH19894 [Drosophila grimshawi]
gi|193903566|gb|EDW02433.1| GH19894 [Drosophila grimshawi]
Length = 108
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP+CG +L E D S RF+C CP++ ++ ++ K L KE+ +
Sbjct: 2 LFFCPSCGNILIIE---EDTSSHRFTCHTCPFISKIKRKITTKTFPRL--KEVDHVLGGI 56
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A E T+ CPAC H +A + ++QTRSADEPM+ FY C N C + W +
Sbjct: 57 AAWENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGNTWRD 108
>gi|402591176|gb|EJW85106.1| DNA-directed RNA polymerase subunit [Wuchereria bancrofti]
Length = 108
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG+ LQ E +F+C CPYV + ++ + L K++ +
Sbjct: 2 LLFCPECGSSLQVE--EGSNCYQFACHNCPYVQPITKLIRSRHYPKL--KDLDEVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T CP C +A + +LQTRSADEPM++FY CAN C HRW E
Sbjct: 58 AWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
>gi|170594906|ref|XP_001902171.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Brugia
malayi]
gi|158590299|gb|EDP28981.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Brugia malayi]
Length = 108
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG+ LQ E +F+C CPYV + ++ + L K++ +
Sbjct: 2 LLFCPECGSSLQIE--EGSNCYQFACHNCPYVQPITKLIRSRHYPKL--KDLDEVLGGPG 57
Query: 61 MMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E Q T CP C +A + +LQTRSADEPM++FY CAN C HRW E
Sbjct: 58 AWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
>gi|322799904|gb|EFZ21045.1| hypothetical protein SINV_08736 [Solenopsis invicta]
Length = 110
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L++ R +R +CP CPY+ + R + KK + ++ A
Sbjct: 3 LRFCPYCANLLRFREDTFTR-NRLACPTCPYIYQIRKEGLRSRTYFVGKKLSDILDSKSA 61
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++ TE CP C H +A + + QTRSADEPMS+FY C +C ++W
Sbjct: 62 LLGQQATEERCPKCSHPRAFFEQRQTRSADEPMSLFYTCC--SCSYKWR 108
>gi|452821122|gb|EME28156.1| DNA-directed RNA polymerase III subunit C11 [Galdieria sulphuraria]
Length = 107
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FC C +L L RF C CP+ +E +++ ++ L KK+ I D
Sbjct: 1 MLFCRWCHNLLM--LERQQDSFRFICRTCPFYYQVEGKME-RKVFGLQKKQEADILGGDK 57
Query: 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QT+ CP C HGKA + ++QTRSADEPMS FY C +C H+W E
Sbjct: 58 QWELADQTDTLCPRCSHGKAYFFQMQTRSADEPMSTFYRCV--HCGHQWKE 106
>gi|290985184|ref|XP_002675306.1| predicted protein [Naegleria gruberi]
gi|284088901|gb|EFC42562.1| predicted protein [Naegleria gruberi]
Length = 109
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELP---HMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M FCP CG +L E D R+ C CPY+CN++S + L KKE+ +
Sbjct: 1 MFFCPQCGNILLIEKAAGRSTDSVYRWVCKTCPYICNIKSEMYFDMN--LEKKEVDDVID 58
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A E C C H KA + QTRSADEPM+ F+ C C H+W E
Sbjct: 59 DEANW-SETVETKCGKCDHNKAYFQMFQTRSADEPMTQFFKCC--KCGHQWKE 108
>gi|384249980|gb|EIE23460.1| hypothetical protein COCSUDRAFT_28851 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAM 61
FCPTC +L + + F C CPYV ++ + I R PL KKE+ + +DA
Sbjct: 6 FCPTCANLLFVKASEVGDLV-FYCQCCPYVYAIDRQ--ITRAVPLKKKEVDDVLGGEDAW 62
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T V CP C H A + E+QTRSADEP ++F+ C + C H W E
Sbjct: 63 KNVQKTNVPCPKCGHTAAYFMEVQTRSADEPATLFFKC--EKCAHNWRE 109
>gi|407037073|gb|EKE38471.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 107
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG +L E F C CPY KI + L +K+I + ++
Sbjct: 4 FCANCGNLLVVE---RGTELYFKCSTCPY--KFTFNKKIVYESELKRKQIDAVLGEEQWK 58
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+TE+ C C H A + ++Q RSADEPM+ FY CAN +C ++W +
Sbjct: 59 NAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
>gi|409074516|gb|EKM74912.1| hypothetical protein AGABI1DRAFT_65164 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193616|gb|EKV43549.1| hypothetical protein AGABI2DRAFT_227329 [Agaricus bisporus var.
bisporus H97]
Length = 106
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + ++++C CPY M +R ++KRK E+ +
Sbjct: 1 MLFCPTCANLLV--ISSDTGYNKWACNTCPYEFPITKQMTTRTRLKRK------EVDDVL 52
Query: 57 TQD-AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D A QT+ +C C H +A +++LQ RSADEPM+ FY C NC H+W E
Sbjct: 53 GGDEAWAHADQTQASCDKCNHDRAYFYQLQIRSADEPMTTFYRCT--NCTHQWRE 105
>gi|67477563|ref|XP_654238.1| RNA polymerase III subunit [Entamoeba histolytica HM-1:IMSS]
gi|56471268|gb|EAL48851.1| RNA polymerase III subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449706368|gb|EMD46228.1| RNA polymerase III subunit, putative [Entamoeba histolytica KU27]
Length = 107
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG +L E F C CPY KI + L +K+I + ++
Sbjct: 4 FCANCGNLLVVE---RGTELYFKCNTCPYKFTFNK--KIVYESELKRKQIDAVLGEEQWK 58
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+TE+ C C H A + ++Q RSADEPM+ FY CAN +C ++W +
Sbjct: 59 NAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
>gi|402870864|ref|XP_003899419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Papio anubis]
Length = 108
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLMVE--EGQRCHRFACNRCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C + HRW +
Sbjct: 58 ACENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQRGHRWRD 108
>gi|255725610|ref|XP_002547734.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135625|gb|EER35179.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 111
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + D +RF C CPYV + S +++ ++ L +KE+ + +
Sbjct: 2 LTFCPNCSNMLLINTGN-DGLNRFYCSTCPYVFKI-SGLQMYDRKKLHRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|297697612|ref|XP_002825945.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pongo
abelii]
Length = 126
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
+ FCP CG L E R RF+C CPYV N+ +V + ++ + +P + D
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVGPEGRRWAAGDSRRPSASSDC 59
Query: 60 -AMMEGPQTEVT---------------CPACKHGKAVYHELQTRSADEPMSIFYMCANKN 103
++ P + + CP C+H +A + +LQTRSADEPM+ FY C N
Sbjct: 60 CSIAASPGSRASSFFNVVTSFFSLPEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQ 119
Query: 104 CKHRWNE 110
C HRW +
Sbjct: 120 CGHRWRD 126
>gi|328717240|ref|XP_001943300.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Acyrthosiphon pisum]
Length = 119
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDR---PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
++FCP C +L H+D R C CPY +++ V + + KEI +
Sbjct: 14 IDFCPNCSNIL-----HLDEYLGEMRQKCQVCPYFSTIKN-VMLASRSFYKLKEIDSVLG 67
Query: 58 -QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++A +V C +C HG+A + ++QTRSADEPM++FY C NC HRW E
Sbjct: 68 GKNAWENVDSIDVVCNSCNHGRAYFLQVQTRSADEPMTVFYKCC--NCGHRWRE 119
>gi|448099787|ref|XP_004199221.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|448103594|ref|XP_004200074.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359380643|emb|CCE82884.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359381496|emb|CCE81955.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
Length = 111
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML +RF C CPY + S ++I ++ LS+K + + D
Sbjct: 2 LTFCPNCANMLVIS-SEDGGSNRFQCLTCPYEFRL-SGMQIYDRKKLSRKTVDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QT+V CP +C KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWENVDQTKVQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHKWRE 110
>gi|339522113|gb|AEJ84221.1| DNA-directed RNA polymerase III subunit K [Capra hircus]
Length = 108
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE++ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGPRCHRFACNTCPYVRNLTRKV-TNRKYP-KLKEVEDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T P +H +A + +LQTR ADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPWPKGEHPRAYFMQLQTRCADEPMTTFYKCGNAQCGHRWRD 108
>gi|308801973|ref|XP_003078300.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
gi|116056751|emb|CAL53040.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
Length = 117
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 1 MEFCPTCGTMLQYE--------LPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEI 52
+ FCPTC +L E R C ACPY ++ V+ + K ++K +
Sbjct: 2 LTFCPTCANLLLIERESAVGTSSSGGGGGVRLRCAACPYAYDVVDGVRQRVKT--TRKTV 59
Query: 53 QPIFTQD-AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ D A +T TCP C+HG+A + ++Q RSADEPMS+FY C C H+W E
Sbjct: 60 DDVLGGDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCC--ECAHQWRE 116
>gi|403352044|gb|EJY75527.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 106
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCPTC +L E H D RF C CPYV +E ++K L +KE+ + ++
Sbjct: 1 MLFCPTCANLLLIEKTHND--FRFFCKTCPYVFVVEQ--NFEKKMQLERKEVDDVLGGKE 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A Q E C C + +A + ++Q RSADEPM+ FY C C ++W E
Sbjct: 57 AWENVDQIEAECHKCGNRRAYFMQIQIRSADEPMTTFYKCT--KCSYQWRE 105
>gi|167391478|ref|XP_001739791.1| DNA-directed RNA polymerase III subunit RPC10 [Entamoeba dispar
SAW760]
gi|165896395|gb|EDR23814.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
dispar SAW760]
Length = 107
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG +L + F C CPY KI + L +K+I + ++
Sbjct: 4 FCANCGNLL---VVERGTELYFKCSTCPYKFTFNK--KIVYESELKRKQIDAVLGEEQWK 58
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+TE+ C C + A + ++Q RSADEPM+ FY CAN +C ++W +
Sbjct: 59 NAQKTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
>gi|440291488|gb|ELP84757.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
invadens IP1]
Length = 107
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG +L E F C CPY KI + L KK++ + ++
Sbjct: 4 FCANCGNLLVVEDG---TELYFKCSTCPY--KFTFNKKIVYESVLKKKQLDAVLGEEQWK 58
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T++ C C G+A + ++Q RSADEPM+ FY CAN +C +W +
Sbjct: 59 NAQKTDINCEKCGFGQAYFMQIQIRSADEPMTTFYKCANYDCGFQWRD 106
>gi|422294442|gb|EKU21742.1| DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis
gaditana CCMP526]
Length = 106
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FCP C +L EL + RF C CPY+ + KI + L +KE+ + +D
Sbjct: 1 MKFCPICSNLLLVELGEQN--FRFCCQTCPYISVITK--KISKTMKLKRKEVDDVLGGED 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
A +T CP C +A + ++Q RSADEPM+ FY C C +RW+
Sbjct: 57 AWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCT--LCANRWS 104
>gi|392585297|gb|EIW74637.1| hypothetical protein CONPUDRAFT_113195 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + ++++C C Y M SR K+KRKQ + +
Sbjct: 1 MLFCPTCANLLV--ISAETGYNKWACNTCAYEFPITKQMTSRTKMKRKQ------VDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M + T ++C C HG+A +++LQ RSADEPM+ FY CA C + W E
Sbjct: 53 GGDEMWKHADSTAISCDKCNHGRAYFYQLQIRSADEPMTTFYRCA--GCGYNWRE 105
>gi|145344997|ref|XP_001417010.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577236|gb|ABO95303.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 120
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-----------RFSCPACPYVCNMESRVKIKRKQPLSK 49
+ FCPTC +L E D + R C +CPY ++ +K++ K
Sbjct: 2 LTFCPTCANLLLLERGAADASTSGAGAGVGGAVRLRCASCPYAYDVVD--GVKQRVDARK 59
Query: 50 KEIQPIFT-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
K + + DA +T TCP C H +A + ++Q RSADEPMS+FY C C +W
Sbjct: 60 KTVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCV--KCARQW 117
Query: 109 NE 110
E
Sbjct: 118 RE 119
>gi|307106217|gb|EFN54463.1| hypothetical protein CHLNCDRAFT_24529 [Chlorella variabilis]
Length = 112
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
+ FCPTCG +L E + + ++FSC C Y ++ +I + PL +KE++P+ ++
Sbjct: 5 LLFCPTCGNLLLVE--NHNGENQFSCSTCCYQYYIDR--QITKGVPLQRKEVEPVLGGEE 60
Query: 60 AMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+TE CP+ C H +A + E Q RSADEP ++FY CA C W E
Sbjct: 61 EWKNAPRTEARCPSDTCGHLQAYFKEAQIRSADEPATLFYRCA--KCGRNWRE 111
>gi|448524457|ref|XP_003868992.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis Co
90-125]
gi|380353332|emb|CCG26088.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis]
Length = 111
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML P D +RF C CPY + RK+ L +KE+ + +
Sbjct: 2 LTFCPHCSNMLMIS-PGDDNNNRFYCSTCPYEFKIAGLSMYDRKK-LHRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|354548243|emb|CCE44980.1| hypothetical protein CPAR2_407830 [Candida parapsilosis]
Length = 111
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML P D +RF C CPY + RK+ L +KE+ + +
Sbjct: 2 LTFCPHCSNMLMIS-PGDDNNNRFYCSTCPYEFKITGLSMYDRKK-LHRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|307186185|gb|EFN71891.1| DNA-directed RNA polymerase III subunit RPC10 [Camponotus
floridanus]
Length = 104
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPS--RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
FCP C +L+++ + PS RF+C CPY+ ++S V R K E + ++
Sbjct: 1 FCPYCANLLRFQ----EDPSGNRFACRTCPYIYKIKSAVTT-RTFFNEKLEKTVVVNKET 55
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
EG T+ CP C + +A + +LQTRSADE M++FY C N +C H W
Sbjct: 56 AWEGVDSTDERCPKCSYPRAYFKQLQTRSADEGMTLFYRCCNHSCGHTW 104
>gi|403273558|ref|XP_003928575.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Saimiri
boliviensis boliviensis]
Length = 100
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V + + +QD+
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVGPEGGR----------LSQDS 49
Query: 61 -MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 50 RFLRLRRHRQPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 100
>gi|68477699|ref|XP_717162.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
gi|68477862|ref|XP_717083.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438781|gb|EAK98107.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438863|gb|EAK98188.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
Length = 111
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF C CPY + RK+ L++KE+ + +
Sbjct: 2 LTFCPNCSNMLLISAGD-DGLNRFYCSTCPYEFKINGLQMYDRKK-LNRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|146419525|ref|XP_001485724.1| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML L D +R C CPY + RK LS+K++ + D
Sbjct: 2 LSFCPYCSNMLLVGLSE-DGCNRLYCTTCPYEFKINGLQMYDRKN-LSRKQVDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QT CP +C KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCNHQWRE 110
>gi|328855592|gb|EGG04718.1| hypothetical protein MELLADRAFT_37278 [Melampsora larici-populina
98AG31]
Length = 114
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 4 CPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAMM 62
CPTCG ML + ++F C +CPY + LS+KE+ + ++A
Sbjct: 11 CPTCGNMLV--VSRATGENKFECQSCPY--EYPVYRNYTDRTVLSRKEVDDVLGGEEAWK 66
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QTE CP C++ +A Y +LQ RSADEPM+ FY C C +W +
Sbjct: 67 NVDQTEAPCPKCENNRAFYMQLQIRSADEPMTTFYRCTVSQCSTQWRD 114
>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
Length = 335
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP+CG +L E D S RF+C CPY+ + ++ K L KE+ + A
Sbjct: 4 FCPSCGNILIIE---EDTDSHRFTCNTCPYISKITRKISTKTFPRL--KEVDHVLGGKAA 58
Query: 62 MEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
E T+ CP+C H +A + ++QTRSADEPM+ FY C N
Sbjct: 59 WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP+CG +L E D S RF+C CPY+ + ++ K L KE+ + A
Sbjct: 4 FCPSCGNILIIE---EDTDSHRFTCNTCPYISKITRKISTKTFPRL--KEVDHVLGGKAA 58
Query: 62 MEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
E T+ CP+C H +A + ++QTRSADEPM+ FY C N
Sbjct: 59 WENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
>gi|238883920|gb|EEQ47558.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
albicans WO-1]
Length = 111
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF C CPY + RK+ L++K++ + +
Sbjct: 2 LTFCPNCSNMLLISAGD-DGLNRFYCSTCPYEFKINGLQMYDRKK-LNRKQVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|241952420|ref|XP_002418932.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
gi|223642271|emb|CAX44240.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
Length = 111
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF C CPY + RK+ L +KE+ + +
Sbjct: 2 LTFCPNCSNMLLISAGD-DGLNRFYCSTCPYEFKINGLQMYDRKK-LHRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 110
>gi|343425557|emb|CBQ69092.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Sporisorium reilianum SRZ2]
Length = 109
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCPTC L +L +++SC CPY ++ +Q L +KE+ + ++
Sbjct: 1 MLFCPTCANCLTIQLDDHGN-NKWSCHTCPY--EFPIVRQMTTRQHLKRKEVDDVMGGEE 57
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T+ CP C++ KA + +LQ RSADEPM+ FY C N C ++W E
Sbjct: 58 SWKNVDSTDAPCPKCENPKAFFMQLQIRSADEPMTTFYRCTNGQCAYQWKE 108
>gi|443697227|gb|ELT97762.1| hypothetical protein CAPTEDRAFT_5287 [Capitella teleta]
Length = 108
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS--RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
+ FCPTC +L E + P+ RF+C CPY+ N+ ++ ++ L KE+ +
Sbjct: 2 LMFCPTCANVLLVE----EGPNCYRFACNTCPYIQNVNRKMSSRKYPKL--KEVDDVLGG 55
Query: 59 DAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A E T CP C + +A + ++QTRSADEPM+ +Y C C H W +
Sbjct: 56 SAAWENVDSTNEKCPKCSNDRAFFMQIQTRSADEPMTTYYKCCAMKCGHMWRD 108
>gi|19114147|ref|NP_593235.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe 972h-]
gi|3334318|sp|O13896.1|RPC10_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|4877777|gb|AAD31425.1|AF126532_1 putative DNA-directed RNA polymerase III C11 subunit
[Schizosaccharomyces pombe]
gi|2414598|emb|CAB16575.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe]
gi|2921268|gb|AAD03488.1| RNA polymerase subunit [Schizosaccharomyces pombe]
Length = 109
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FCPTCG L + R + F C CPY + + + ++KE+ + ++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 57
Query: 60 AMMEGPQTEVTC--PACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A QTEVTC C + +A + +LQ RSADEPMS FY C CK +W E
Sbjct: 58 AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT--KCKFQWRE 108
>gi|303272895|ref|XP_003055809.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463783|gb|EEH61061.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 113
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS----RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF 56
+ FCP+C ML + + C CPY ++ ++ P+++KE+ +
Sbjct: 2 LTFCPSCANMLLVTTNAAGADASPCLKLICQTCPYAYDVTK--TLRDDVPVTRKEVDDVL 59
Query: 57 T-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA +T TCP C HG+A + ++Q RSADEPMS F+ C C ++W E
Sbjct: 60 GGDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKCV--KCGNQWRE 112
>gi|402223920|gb|EJU03983.1| hypothetical protein DACRYDRAFT_63561 [Dacryopinax sp. DJM-731 SS1]
Length = 108
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC----NMESRVKIKRKQPLSKKEIQPIF 56
M FCP C +L + +++ CP CPY M SR ++KRK E+ +
Sbjct: 1 MLFCPNCSNILI--IAADTGRNKWRCPTCPYEFPIHKQMSSRTRLKRK------EVDDVL 52
Query: 57 TQDAMM-EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A + T +C C + KA + +LQ RSADEPM+ FY C C H W E
Sbjct: 53 GGEAAWKDADSTSASCEKCGNDKAYFMQLQIRSADEPMTTFYRCTRSTCGHNWRE 107
>gi|392575324|gb|EIW68458.1| hypothetical protein TREMEDRAFT_24045, partial [Tremella
mesenterica DSM 1558]
Length = 108
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR-FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-Q 58
M FCP C L + D + + CP CPY N+ +I + L +K++ + +
Sbjct: 1 MLFCPYCSNAL--TIGDQDNSDKCWICPTCPYKYNIAPGKQISMRTHLKRKQVDDVLGGK 58
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A + + TCP C KA Y +LQ RSADEPM+ FY C +C ++W E
Sbjct: 59 EAWANVDKIDATCPKCDARKAYYRQLQIRSADEPMTTFYKCV--DCSYQWRE 108
>gi|443918575|gb|ELU39013.1| transcription factor s-II (TFIIS) domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 126
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L ++++C CPY M SR +++RK E+ +
Sbjct: 1 MLFCPTCANILIIS-AEASGFNKWACQTCPYEFPITKQMTSRTRLQRK------EVDDVL 53
Query: 57 TQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYM----------------- 98
DAM + QT+V CP C +G+A + +LQ RSADEPM+ F +
Sbjct: 54 GGDAMWKDVDQTDVACPKCDNGRAYFMQLQIRSADEPMTTFRLISATALAHFTNSPTPDR 113
Query: 99 CANKNCKHRW 108
CAN C ++W
Sbjct: 114 CANSQCGYQW 123
>gi|409042226|gb|EKM51710.1| hypothetical protein PHACADRAFT_212338 [Phanerochaete carnosa
HHB-10118-sp]
Length = 106
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCP+C +L + ++++C C Y M SR +++RKQ + +
Sbjct: 1 MLFCPSCANLLV--ISTETGYNKWACNTCAYEFPITKQMTSRTRLERKQ------VDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M + T +CP C HG+A ++ LQ RSADEPM+ F+ CA C H+W E
Sbjct: 53 GGDDMWKHADSTAASCPKCDHGRAYFYMLQIRSADEPMTTFFRCA--ACGHQWRE 105
>gi|385305484|gb|EIF49450.1| rna polymerase iii c11 subunit [Dekkera bruxellensis AWRI1499]
Length = 112
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + FSCP CPY + +RK+ L +K + + +
Sbjct: 2 LTFCPYCSNMLVVTRSETTGSNTFSCPTCPYEFPIVGLQMFERKE-LPRKVVDDVLGGEG 60
Query: 61 MMEG-PQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP C KA Y ++Q RSADEPM+ FY C C HRW E
Sbjct: 61 AWDNVDQTNAQCPVETCGSNKAYYFQIQIRSADEPMTTFYKCC--KCGHRWRE 111
>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
Length = 342
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+CG +L E RF+C CPY+ ++ ++ K L KE+ + A
Sbjct: 4 FCPSCGNILIIE--EDTSCHRFTCNTCPYISKIKRKITAKTFPRL--KEVDHVLGGKAAW 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
E T+ CP C H +A + +LQTRSADEPM+ FY C N
Sbjct: 60 ENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKCCN 99
>gi|224009087|ref|XP_002293502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970902|gb|EED89238.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 1 MEFCPTCGTMLQY-----ELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
M FCP GT+LQ + F+C CPY + + +I++ P+ KK +
Sbjct: 1 MWFCPLDGTLLQVITATSSASTSPSTNIFACTTCPYSQPITTP-QIQKSFPIRKKVDDIL 59
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ A +T CP C G+A + ++Q RSADEPMS+FY C C H+WN+
Sbjct: 60 GGEKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKCV--KCSHQWND 112
>gi|260941386|ref|XP_002614859.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851282|gb|EEQ40746.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 111
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +R CP CPY + +RK L +K++ + D
Sbjct: 2 LSFCPYCSNMLLVSQGE-DNCNRLYCPTCPYEFRISGFQMFERKM-LPRKDVDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C + KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKCT--KCSHQWRE 110
>gi|281207161|gb|EFA81344.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 108
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKK--EIQPIFTQ 58
M FCP+C ML E + +RF CP CPY+ N+++ K+ K PL +K E+
Sbjct: 1 MLFCPSCANMLLVEKGEPN--TRFYCPTCPYIFNIQN--KVVTKVPLIRKNIEVDVFGGD 56
Query: 59 DAMMEGPQTEVTCPACKHGKAVY-HELQTRSADEPMSIFYMCANKNCKHRW 108
DA ++ QT+ CP CK + VY E+Q DEP + +Y C C RW
Sbjct: 57 DAWLDSQQTDAHCPTCKERRRVYLMEIQVYPIDEPKTTYYKCT--ICGGRW 105
>gi|170097063|ref|XP_001879751.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645154|gb|EDR09402.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 106
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC----NMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + ++++C C Y M SR ++ RKQ + +
Sbjct: 1 MLFCPTCANLL--VISSETGYNKWACNTCAYEFPISKQMTSRTRLVRKQ------VDDVL 52
Query: 57 TQDAMM-EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M QT+ +C C H +A +++LQ RSADEPM+ FY C +C H+W E
Sbjct: 53 GGDEMWAHADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCT--SCAHQWRE 105
>gi|190345416|gb|EDK37297.2| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +R C CPY + RK LS+K++ + D
Sbjct: 2 LSFCPYCSNMLLVGSSE-DGCNRLYCTTCPYEFKINGLQMYDRKN-LSRKQVDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E QT CP +C KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCNHQWRE 110
>gi|326436636|gb|EGD82206.1| RNA polymerase III subunit C11 [Salpingoeca sp. ATCC 50818]
Length = 108
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C L + + + F+C CPY M V RK + K+++ I
Sbjct: 5 FCPLCTNQLVLDTS-AECGTHFACRTCPYKHEMNMPVVSSRKS-RNPKQVEDIIGSST-- 60
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T+ CP C H +A + E+QTRSADEPM++FY C + CKH+W+E
Sbjct: 61 EGLSMTDARCPQCDHARAFFFEMQTRSADEPMTVFYCC--EECKHKWSE 107
>gi|294658313|ref|XP_460643.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
gi|202953038|emb|CAG88975.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
Length = 111
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF C CPY ++ RK+ LS+KE+ + +
Sbjct: 2 LSFCPYCANMLIMAQKD-DGCNRFFCSTCPYEFKIDGFQMYDRKK-LSRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCSHQWRE 110
>gi|330804516|ref|XP_003290240.1| hypothetical protein DICPUDRAFT_37036 [Dictyostelium purpureum]
gi|325079657|gb|EGC33247.1| hypothetical protein DICPUDRAFT_37036 [Dictyostelium purpureum]
Length = 109
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP-IFT-Q 58
M FCP C ML E D +RF C CPYV ++++ K+ K PL +K + +F +
Sbjct: 1 MLFCPLCANMLLVEPDITD--TRFYCQTCPYVFHIKN--KVVTKVPLVRKVVDSDVFGGE 56
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A Q EV CP C H +A ++Q A EP + F C N +C+H+W +
Sbjct: 57 EAWKSADQVEVECPVCHHKRAGIIDIQVSLAPEPKTSFLRCRNPSCEHQWQK 108
>gi|196010167|ref|XP_002114948.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
gi|190582331|gb|EDV22404.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
Length = 106
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C L E F C CPY+ + + + L K++ I A
Sbjct: 2 LFFCPNCANALYME--KQGECLVFLCHTCPYLYKVTKTIASRNYPKL--KQVDDILGGKA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E TE TCP C H +A + ++QTRSADEPM++FY C +C HRW +
Sbjct: 58 AWENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCC--SCGHRWKD 106
>gi|167520890|ref|XP_001744784.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777115|gb|EDQ90733.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 1 MEFCPTCGTML--QYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M FCP CG ML Q L F C CPY + R+ + I+
Sbjct: 1 MIFCPLCGNMLIMQSSL----HGYFFGCNTCPYKHELGEHRVTARRSMHHDERADEIYGG 56
Query: 59 DAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D+ E TE CP C H +A Y + QTRSADEP ++FY C + C H+WN+
Sbjct: 57 DSAKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFYCC--EKCNHKWND 107
>gi|388858092|emb|CCF48329.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Ustilago hordei]
Length = 109
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCPTC L +L +++SC CPY ++ +Q L +KE+ + ++
Sbjct: 1 MLFCPTCANCLIIQLDDHGN-NKWSCHTCPY--EFPIIQQMTTRQHLKRKEVDDVMGGEE 57
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + CP C++ KA + +LQ RSADEPM+ FY C N C ++W E
Sbjct: 58 SWKNVDSIDAPCPKCENPKAFFMQLQIRSADEPMTTFYRCTNGQCAYQWRE 108
>gi|45201124|ref|NP_986694.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|44985907|gb|AAS54518.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|374109945|gb|AEY98850.1| FAGR029Wp [Ashbya gossypii FDAG1]
Length = 112
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML R CP+CPY +E V+I ++ L +KE+ + +
Sbjct: 2 LSFCPYCNNMLPVSKGDSGV-YRLGCPSCPYEFPIEG-VEIYDRRNLPRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT V CP C KA + +LQ RSADEPM+ FY C C H+W E
Sbjct: 60 AWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKCV--TCGHKWRE 111
>gi|159113781|ref|XP_001707116.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
gi|157435219|gb|EDO79442.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
Length = 105
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG +L EL +F C C Y + +I R L++K + P+ +
Sbjct: 1 MLFCPCCGNLLLIELSG---DVQFYCKTCAYRYTLSG--QISRSLTLTRKSVDPVLGGET 55
Query: 61 MMEGP-QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G +T+ CP C A + ++Q RS+DEPMS FY C C H+W E
Sbjct: 56 AWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCC--QCAHQWRE 104
>gi|353244383|emb|CCA75784.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Piriformospora indica DSM 11827]
Length = 98
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVY 81
+++ C CPY IK + L +K++ + D G QT CP C+H A +
Sbjct: 12 NKWICQTCPY--EFPITRTIKSRTHLKRKQVDDVLGGDDSW-GNQTPAPCPKCEHPMAHF 68
Query: 82 HELQTRSADEPMSIFYMCANKNCKHRWNE 110
ELQ RSADEPM+IFY CANK C +W E
Sbjct: 69 MELQIRSADEPMTIFYKCANKECGFQWKE 97
>gi|429962736|gb|ELA42280.1| transcription factor S [Vittaforma corneae ATCC 50505]
Length = 104
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C L LP + C CPY + V + Q + K I+ + ++
Sbjct: 1 MHFCPFCNNFL---LPEHQQSVHLICTTCPYFYKL--NVTLSFTQSNTVKIIEKVLRKEQ 55
Query: 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ + ++ C C +G+A++ E+QTRSADEPM+IFY C C H W E
Sbjct: 56 DLKYANKCQIKCQKCSNGEALFVEIQTRSADEPMTIFYQCT--KCHHNWKE 104
>gi|405121978|gb|AFR96746.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
grubii H99]
Length = 118
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCP C L + CP CPY +E ++ ++ L +KE+ + ++
Sbjct: 1 MLFCPYCANSLTIGDREDSTDKCWVCPTCPYQFIIERQISMRTH--LKRKEVDDVLGGKE 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ CP C H +A + ++Q RSADEPM+ FY C C H+W E
Sbjct: 59 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 107
>gi|395330908|gb|EJF63290.1| hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens
LYAD-421 SS1]
Length = 106
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCP C +L + ++++C C Y M SR K+KRK E+ +
Sbjct: 1 MLFCPNCANLLV--ISAETGYNKWACNTCAYEFPITKQMTSRTKLKRK------EVDDVL 52
Query: 57 T-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D T TCP C +G+A +++LQ RSADEPM+ FY C C + W E
Sbjct: 53 GGEDQWKHADSTNATCPKCDNGRAYFYQLQIRSADEPMTTFYRCT--ACGNNWRE 105
>gi|393216306|gb|EJD01796.1| hypothetical protein FOMMEDRAFT_20569 [Fomitiporia mediterranea
MF3/22]
Length = 106
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP+C +L + ++++C CPY + ++ ++ L +K + + DA
Sbjct: 1 MLFCPSCANLLV--ISADTGLNKWACNTCPY--DFPITNQMTSREWLQRKAVDDVLGGDA 56
Query: 61 MM-EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T V CP C + +A +++LQ RSADEPM+ FY C C ++W E
Sbjct: 57 AWNDADSTTVACPKCDNDRAYFYQLQIRSADEPMTTFYRCT--TCTYQWRE 105
>gi|321261337|ref|XP_003195388.1| RNA polymerase III smallest subunit [Cryptococcus gattii WM276]
gi|317461861|gb|ADV23601.1| RNA polymerase III smallest subunit, putative [Cryptococcus gattii
WM276]
Length = 131
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCP C L + + + CP CPY +E ++ ++ L +KE+ + ++
Sbjct: 1 MLFCPYCANSLT--IGDREDSTDKVCPTCPYQFIIERQISMRTH--LKRKEVDDVLGGKE 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ CP C H +A + ++Q RSADEPM+ FY C C H+W E
Sbjct: 57 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 105
>gi|58269278|ref|XP_571795.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228031|gb|AAW44488.1| RNA polymerase III smallest subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 132
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCP C L + + + CP CPY +E ++ ++ L +KE+ + ++
Sbjct: 1 MLFCPYCANSLT--IGDREDSTDKVCPTCPYQFIIERQISMRTH--LKRKEVDDVLGGKE 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ CP C H +A + ++Q RSADEPM+ FY C C H+W E
Sbjct: 57 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 105
>gi|134114353|ref|XP_774105.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256738|gb|EAL19458.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 132
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M FCP C L + + + CP CPY +E ++ ++ L +KE+ + ++
Sbjct: 1 MLFCPYCANSLT--IGDREDSTDKVCPTCPYQFIIERQISMRTH--LKRKEVDDVLGGKE 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T+ CP C H +A + ++Q RSADEPM+ FY C C H+W E
Sbjct: 57 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 105
>gi|308162494|gb|EFO64883.1| RNA polymerase III subunit C11 [Giardia lamblia P15]
Length = 105
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG +L EL +F C C Y + +I R L++K + P+ +
Sbjct: 1 MLFCPCCGNLLLIELSG---DVQFYCKTCAYRYMLSG--QISRSLTLTRKSVDPVLGGET 55
Query: 61 MMEGP-QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G +T+ CP C A + ++Q RS+DEPMS FY C C H+W E
Sbjct: 56 AWQGADKTQNPCPICAFPDAFWIQIQIRSSDEPMSRFYRCC--QCAHQWRE 104
>gi|429965129|gb|ELA47126.1| hypothetical protein VCUG_01399 [Vavraia culicis 'floridensis']
Length = 105
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP--IFTQD 59
+FCP C T+L + M+ + F C C Y ES +I ++ + KEI+ ++ +D
Sbjct: 3 QFCPFCRTLLL--INRMNGTTSFCCRTCSYS---ESVGRI-HERIVFDKEIKERIVWKED 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M + E C C + A ++E+QTRSADEPM+IFY C CK+ W E
Sbjct: 57 VMRSMAKCEKICEKCGYNTATFYEMQTRSADEPMTIFYQCL--QCKNTWKE 105
>gi|302675000|ref|XP_003027184.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
gi|300100870|gb|EFI92281.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
Length = 110
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 19/119 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + +++SC CPY M +R ++KRK EI +F
Sbjct: 1 MLFCPTCANLLV--ISSDTGLNKWSCNTCPYEFPITKQMTTRTRMKRK------EIDDVF 52
Query: 57 TQDAMMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMS----IFYMCANKNCKHRWNE 110
D + Q T C AC H +A +++LQ RSADEPM+ I + CA +C +RW E
Sbjct: 53 GGDEQWKHAQSTMAQCEACSHDRAYFYQLQIRSADEPMTTWALIIFRCA--SCGNRWRE 109
>gi|253742495|gb|EES99325.1| RNA polymerase III subunit C11 [Giardia intestinalis ATCC 50581]
Length = 105
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG +L EL +F C C Y + +I R L++K + P+ +
Sbjct: 1 MLFCPCCGNLLLIELAG---DVQFYCKTCSYRYTLSG--QISRSLTLTRKSVDPVLGGET 55
Query: 61 MMEGP-QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G +T CP C +A + ++Q RS+DEPMS FY C C H+W E
Sbjct: 56 AWQGADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCC--QCAHQWRE 104
>gi|91076202|ref|XP_972311.1| PREDICTED: similar to POLR3K [Tribolium castaneum]
gi|270015174|gb|EFA11622.1| hypothetical protein TcasGA2_TC030689 [Tribolium castaneum]
Length = 108
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAM 61
FCP CG +L + R F+C CP + R KI + K + + +DA
Sbjct: 4 FCPFCGNLL-FAQQTCGRLG-FACRICPV--SFPIRGKISNRTYFQVKSVDDVLGGEDAW 59
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T TCP C H A + ++QTRSADEPM+ FY C N C H W E
Sbjct: 60 KNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCNPECAHNWRE 108
>gi|294953345|ref|XP_002787717.1| Surfeit locus protein, putative [Perkinsus marinus ATCC 50983]
gi|239902741|gb|EER19513.1| Surfeit locus protein, putative [Perkinsus marinus ATCC 50983]
Length = 594
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAM 61
FCPTCG +L + H ++ C CPY+ + K+ +K+ L K+ ++ + DA
Sbjct: 362 FCPTCGNLLVLQAGH--DTMKYWCRTCPYLFPISE--KLTQKEILHKEVVEDVLGGPDAW 417
Query: 62 MEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMC 99
+ QTE CPA C +A + ++Q RSADEPM+ FY C
Sbjct: 418 KDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRC 457
>gi|395835535|ref|XP_003790733.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 113
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 24 FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHE 83
F+C CPYV N+ +V RK KK + A T +CP C+H +A + +
Sbjct: 28 FACNTCPYVHNITRKV-TNRKYSKLKKVDDVLGGASAWENVDSTAESCPKCEHPRAYFMQ 86
Query: 84 LQTRSADEPMSIFYMCANKNCKHRWNE 110
LQT SADEPM+ FY C N C H W +
Sbjct: 87 LQTSSADEPMTTFYKCCNAQCGHHWRD 113
>gi|255072375|ref|XP_002499862.1| predicted protein [Micromonas sp. RCC299]
gi|226515124|gb|ACO61120.1| predicted protein [Micromonas sp. RCC299]
Length = 109
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
+ FCP C ML + + C CPY + ++ K +++K++ + D
Sbjct: 2 LSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITETIRDPIK--IARKQVDDVLGGDD 59
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +T TCP C HG+A + ++Q RSADEPMS FY C C ++W E
Sbjct: 60 AWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCC--KCANQWRE 108
>gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia]
gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia]
Length = 325
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+CG +L E RF+C CPY+ + R KI K KE+ + A
Sbjct: 4 FCPSCGNILIIE--EDTNCHRFTCNTCPYISKI--RRKISTKTFPRLKEVDHVLGGKAAW 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFY 97
E T+ CP C H +A + ++QTRSADEPM+ FY
Sbjct: 60 ENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFY 95
>gi|384488570|gb|EIE80750.1| hypothetical protein RO3G_05455 [Rhizopus delemar RA 99-880]
Length = 82
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 43 RKQPLSKKEIQPIFT-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
RKQ L +KE+ + DA TE TCP C+H +A + ++Q RSADEP S+F+ C N
Sbjct: 14 RKQ-LKRKEVDDVLGGADAWKNVDSTEATCPKCEHDRAYFMQIQIRSADEPSSLFFKCCN 72
Query: 102 KNCKHRWNE 110
++C+H+W E
Sbjct: 73 EDCQHQWRE 81
>gi|345562385|gb|EGX45453.1| hypothetical protein AOL_s00169g59 [Arthrobotrys oligospora ATCC
24927]
Length = 111
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC L + +CP CPY + R+ +R + +KE+ I +
Sbjct: 2 LLFCPTCSNSLTVHRQSATGQNALTCPTCPYTYPLTRRLFERRH--IRRKEVDDILGGEG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ TEV CP C +A ++ +Q RSADEPM+ FY C C H+W E
Sbjct: 60 SWDNVDNTEVQCPDEVCGGDRAYFYMVQIRSADEPMTTFYKCM--KCGHKWRE 110
>gi|406604219|emb|CCH44305.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 111
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML R +CP CPY + + V+I ++ L K+I + D
Sbjct: 2 LSFCPNCSNMLLISTADTGI-HRLNCPTCPYEFPI-AGVEIFDRKELPTKQIDDVLGGDG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C + KA + +LQ RSADEPM+ F C C H+W E
Sbjct: 60 AWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFLKCV--KCGHQWRE 110
>gi|410074205|ref|XP_003954685.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
gi|372461267|emb|CCF55550.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
Length = 110
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML L + C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPVCNNMLLVSLADSGIYT-LKCHSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
>gi|449549271|gb|EMD40237.1| hypothetical protein CERSUDRAFT_46075 [Ceriporiopsis subvermispora
B]
Length = 107
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCP C +L + ++++C C Y M SR K+KRK E+ +
Sbjct: 1 MLFCPNCANLLV--ISAETGYNKWACNTCAYEFPITKQMTSRTKLKRK------EVDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M + T VTCP C H +A +++LQ RSADEPM+ +C C H W E
Sbjct: 53 GGDEMWKHADATTVTCPKCDHNRAYFYQLQIRSADEPMTTC-LCRCAACAHNWRE 106
>gi|393235824|gb|EJD43376.1| hypothetical protein AURDEDRAFT_114723 [Auricularia delicata
TFB-10046 SS5]
Length = 126
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIK---RKQPLS-------KK 50
+ FCP CGT+L +LP M+ + C C +V S IK R P + K+
Sbjct: 13 LLFCPHCGTLL--DLPKMNEDT-VKCDQCGHVEPSSSYDNIKIVTRSHPDAFPSVLRQKR 69
Query: 51 EIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ Q + DA++ + + CPAC H +A+ ELQ RSADE +I Y CA +CKHRW
Sbjct: 70 KTQTQTSGDALL---RVKEKCPACGHNEALAKELQLRSADEGSTILYTCA--DCKHRW 122
>gi|444323471|ref|XP_004182376.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
gi|387515423|emb|CCH62857.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
Length = 111
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + +C +CPY ++ ++I ++ L +KE+ +
Sbjct: 2 ISFCPLCNNMLLIATSQTENVYTLTCKSCPYEFPIQG-IEIFDRKKLPRKEVDDVLG-GG 59
Query: 61 MMEGPQTEVTCPA---CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC +RW E
Sbjct: 60 WDNVDQTKVQCPNYDNCGGESAYFFQLQIRSADEPMTTFYKCV--NCGNRWKE 110
>gi|254572143|ref|XP_002493181.1| RNA polymerase III subunit C11 [Komagataella pastoris GS115]
gi|238032979|emb|CAY71002.1| RNA polymerase III subunit C11 [Komagataella pastoris GS115]
gi|328352804|emb|CCA39202.1| DNA-directed RNA polymerase III subunit C11 [Komagataella pastoris
CBS 7435]
Length = 111
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML D +RF+CP CPY + +RK LS+K++ +
Sbjct: 2 LMFCPNCQNMLTVT-KAADSINRFNCPTCPYEFPIVGMQMYERKD-LSRKQVDDVLGGAG 59
Query: 61 MMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP +C KA + +LQ RSADEPM+ F C C H+W E
Sbjct: 60 AWDNVDQTGAQCPIDSCGGDKAYFFQLQIRSADEPMTTFLKCC--KCGHQWRE 110
>gi|242398553|ref|YP_002993977.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
gi|242264946|gb|ACS89628.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
Length = 108
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLS-KKEIQPIFT 57
M+FCP CG ++ LP R F C C Y ++E+ K K Q + +E P+
Sbjct: 1 MKFCPKCGNIM---LPDKKR-GVFVCRKCGYEEPLDLETASKYKITQKIKHDREDIPVIE 56
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
QD P+ ++TCP C + +A + ELQTR+ DEP +IFY C C + W
Sbjct: 57 QDVATL-PKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCT--KCGYTW 104
>gi|325184771|emb|CCA19262.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 107
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV------CNMESRVKIKRKQPLSKKEIQP 54
M FCP+CG +L E PS C C V M + +I+++ L +K++
Sbjct: 1 MHFCPSCGNILLIE------PS--VCALCLEVEASVRGLYMLCKTRIEKRVKLQRKQVDA 52
Query: 55 IFTQDAMMEGP-QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
I D + QTE CP C+H A + ++Q RSADEP + FY C CK +WN
Sbjct: 53 ILGGDEAWDNVNQTEAWCPHCEHNHAYFMQIQIRSADEPSTTFYKCV--QCKKQWN 106
>gi|156843581|ref|XP_001644857.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156115509|gb|EDO16999.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 110
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML SC +CPY +E+ V+I ++ L +KEI +
Sbjct: 2 LSFCPLCNNMLLVATSD-SGIYNLSCRSCPYEFPIEN-VEIYDRKELERKEIDDVLGG-G 58
Query: 61 MMEGPQTEVTCPA---CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC +RW E
Sbjct: 59 WDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKCV--NCGNRWKE 109
>gi|365982255|ref|XP_003667961.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
gi|343766727|emb|CCD22718.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C ML + +C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPSCNNMLLITTADSGVYT-LTCRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLG-GG 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKCV--NCAHRWKE 109
>gi|392566129|gb|EIW59305.1| hypothetical protein TRAVEDRAFT_28538 [Trametes versicolor
FP-101664 SS1]
Length = 106
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCP C +L + ++++C C Y M SR K+KRK + +
Sbjct: 1 MLFCPNCANLLV--ISAETGYNKWACNTCAYEFPITKQMTSRTKLKRKV------VDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + T TCP C +G+A +++LQ RSADEPM+ FY C C + W E
Sbjct: 53 GGDEQWKHADSTTATCPKCDNGRAYFYQLQIRSADEPMTTFYRCT--ACANNWRE 105
>gi|294896422|ref|XP_002775549.1| DNA-directed RNA polymerase III, putative [Perkinsus marinus ATCC
50983]
gi|239881772|gb|EER07365.1| DNA-directed RNA polymerase III, putative [Perkinsus marinus ATCC
50983]
Length = 327
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCPTCG +L + H ++ C CPY+ + K+ +K+ L K+ + DA
Sbjct: 6 FCPTCGNLLVLQAGH--DTMKYWCRTCPYLFPISE--KLTQKEILHKEVEDVLGGPDAWK 61
Query: 63 EGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107
+ QTE CPA C +A + ++Q RSADEPM+ FY C + R
Sbjct: 62 DVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVKSQEQTR 108
>gi|313236269|emb|CBY11591.1| unnamed protein product [Oikopleura dioica]
Length = 109
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG +L+ + R C CPY+ N+ + K+ L KE++ + DA
Sbjct: 3 LLFCPICGGLLK--VGSGSAVQRMECLTCPYIHNIMDPLTNKKFPRL--KELRDVMGGDA 58
Query: 61 MMEGPQT-EVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E + E C C + +A + +LQTRSADEPM+ FY C +C H+W E
Sbjct: 59 AWENADSMEEACTREGCTNRRAYFFQLQTRSADEPMTTFYRCT--DCAHQWKE 109
>gi|123478003|ref|XP_001322166.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121905007|gb|EAY09943.1| hypothetical protein TVAG_482170 [Trichomonas vaginalis G3]
Length = 109
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD-A 60
FCP CG +L + DR ++ C AC +V R + PL+ +++ + T D A
Sbjct: 5 SFCPACGNLLLVDTSG-DR-TQLKCRACNFVMGFVGRTV--QSAPLNPLDVKALITNDDA 60
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
M +T+ C C H +A + E+Q RSADEP ++F+ C C + W E
Sbjct: 61 MSFQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCC--KCGNTWRE 108
>gi|403217034|emb|CCK71529.1| hypothetical protein KNAG_0H01160 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP C ML + H D +C +CPY ++ ++I ++ L +KE+ +
Sbjct: 2 LSFCPICNNMLL--ISHADSGIYTLTCHSCPYEFPIDG-IEIYDRKKLERKEVDDVLGG- 57
Query: 60 AMMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC +RW E
Sbjct: 58 GWDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKCV--NCGNRWKE 109
>gi|392591123|gb|EIW80451.1| hypothetical protein CONPUDRAFT_105468 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC L + ++++C C Y M SR K+KRKQ + +
Sbjct: 1 MLFCPTCANHLV--ISAETGFNKWACNTCAYEFPITKQMTSRTKMKRKQ------VDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M + T ++C C HG+A +++LQ RSADEPM+ CA C + W E
Sbjct: 53 GGDEMWKHADSTAISCDKCNHGRAYFYQLQIRSADEPMTTCARCA--GCGYNWRE 105
>gi|366988479|ref|XP_003674006.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
gi|342299869|emb|CCC67625.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + +C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPLCNNMLLITTADSGVYT-LTCRSCPYEFPIEG-IEIYDRKTLPRKEVDDVL-GGG 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKCV--NCAHRWKE 109
>gi|50311767|ref|XP_455912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|38636481|emb|CAD58583.1| RNA polymerase III C11 subunit [Kluyveromyces lactis]
gi|49645048|emb|CAG98620.1| KLLA0F18568p [Kluyveromyces lactis]
Length = 112
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + +C +CPY ++ +++ ++ L +KE+ + +
Sbjct: 2 LSFCPLCNNMLLVSKADSGL-YKLACGSCPYQFLIDG-IEVYDRKNLPRKEVDDVLGGEG 59
Query: 61 MMEG-PQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT CP C +A + +LQ RSADEPM+ FY C NC H+W E
Sbjct: 60 AWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCV--NCGHKWRE 111
>gi|344302440|gb|EGW32714.1| hypothetical protein SPAPADRAFT_60072 [Spathaspora passalidarum
NRRL Y-27907]
Length = 101
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 16 PHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG-PQTEVTCP-- 72
P D ++F C CPY + +RK+ LS+KE+ + + + QT CP
Sbjct: 6 PGDDGCNKFYCSTCPYEFKINGLQMYERKK-LSRKEVDDVLGGEGTWDDVDQTAAQCPID 64
Query: 73 ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+C KA + +LQ RSADEPM+ FY C C HRW E
Sbjct: 65 SCGGMKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKE 100
>gi|363749925|ref|XP_003645180.1| hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888813|gb|AET38363.1| Hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
Length = 112
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + SCP+CPY +E ++I +Q L +K++ +
Sbjct: 2 LSFCPYCKNMLLVSKSDSGL-YKMSCPSCPYEFPIEG-IEIYDRQTLPRKQVDDALGGEG 59
Query: 61 MMEG-PQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT + CP C KA + +LQ RSADEPM+ FY C C ++W E
Sbjct: 60 AWDNVDQTAIQCPNHETCGGEKAYFFQLQIRSADEPMTTFYKCV--TCGNKWRE 111
>gi|156093906|ref|XP_001612991.1| transcription factor [Plasmodium vivax Sal-1]
gi|148801865|gb|EDL43264.1| transcription factor, putative [Plasmodium vivax]
Length = 106
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM- 61
FCP C ++ L H++ F C C N + +++ K KE DA+
Sbjct: 4 FCPNCHNIV---LVHVENGVYFYCKTC----NFKYKIRNKIFNKFDCKEYNKTIPLDAVD 56
Query: 62 ---MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T+ CP C H +A ++ LQ RSADEP ++FY+C C H W E
Sbjct: 57 VNNKNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYICV--KCNHHWKE 106
>gi|367013272|ref|XP_003681136.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
gi|359748796|emb|CCE91925.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
Length = 110
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML S SC +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPLCNNMLLIASADSGVYS-LSCRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC +RW E
Sbjct: 59 WDNVDQTKVQCPNYDICAGESAYFFQLQIRSADEPMTTFYKCV--NCGNRWKE 109
>gi|392300156|gb|EIW11247.1| Rpc11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 110
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C ML + +C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPSCNNMLLITSGD-NGVYTLACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+ CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
>gi|367006795|ref|XP_003688128.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
gi|357526435|emb|CCE65694.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
Length = 110
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP C ML + + D + +C +CPY +E+ +++ ++ L +KEI +
Sbjct: 2 LSFCPLCNNMLL--ISNADSSVHKLTCHSCPYEFPIEN-IEVYDRKKLERKEIDDVLGG- 57
Query: 60 AMMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ FY C NC RW E
Sbjct: 58 GWDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKCV--NCGKRWKE 109
>gi|390371152|dbj|GAB65033.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 106
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM- 61
FCP C ++ L H++ F C C N + ++K K K+ DA+
Sbjct: 4 FCPNCHNIV---LVHIENGVYFYCKTC----NFKYKIKNKIFNKFDCKDHNKTIPLDAVD 56
Query: 62 ---MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T+ CP C H +A ++ LQ RSADEP +IFY+C C H W E
Sbjct: 57 VNNKNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTIFYICI--KCNHHWKE 106
>gi|6320250|ref|NP_010330.1| Rpc11p [Saccharomyces cerevisiae S288c]
gi|3334319|sp|Q04307.1|RPC10_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|798898|emb|CAA89076.1| unknown [Saccharomyces cerevisiae]
gi|4210977|gb|AAD12060.1| RNA polymerase III C11 subunit [Saccharomyces cerevisiae]
gi|45269165|gb|AAS55962.1| YDR045C [Saccharomyces cerevisiae]
gi|151942036|gb|EDN60392.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190404984|gb|EDV08251.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|256270826|gb|EEU05973.1| Rpc11p [Saccharomyces cerevisiae JAY291]
gi|259145290|emb|CAY78554.1| Rpc11p [Saccharomyces cerevisiae EC1118]
gi|285811069|tpg|DAA11893.1| TPA: Rpc11p [Saccharomyces cerevisiae S288c]
gi|349577114|dbj|GAA22283.1| K7_Rpc11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|401626309|gb|EJS44261.1| rpc11p [Saccharomyces arboricola H-6]
Length = 110
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C ML + +C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+ CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
>gi|68073273|ref|XP_678551.1| transcription factor [Plasmodium berghei strain ANKA]
gi|56499055|emb|CAI00136.1| transcription factor, putative [Plasmodium berghei]
Length = 106
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM- 61
FCP C ++ L H++ C C N + ++K K KE DA+
Sbjct: 4 FCPNCHNIV---LVHVENGVYLYCKTC----NFKYKIKNKIYNKYDCKEFNKTIPLDAVD 56
Query: 62 ---MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T+ CP C H +A ++ LQ RSADEP ++FY+C NC + W E
Sbjct: 57 MNNKNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICV--NCNYHWKE 106
>gi|268567816|ref|XP_002647879.1| Hypothetical protein CBG23695 [Caenorhabditis briggsae]
Length = 240
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
CP C H +A + +LQTRSADEP++IFY CAN +C HRW E
Sbjct: 201 CPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 240
>gi|50551345|ref|XP_503146.1| YALI0D22308p [Yarrowia lipolytica]
gi|49649014|emb|CAG81344.1| YALI0D22308p [Yarrowia lipolytica CLIB122]
Length = 110
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCPTC ML L RF C CPY ++ + ++ L KK++ + +
Sbjct: 2 LTFCPTCTNMLT--LSTSGNGMRFECRTCPYEYYLQDGTIVYDRKVLEKKKVDSVLGGEN 59
Query: 61 MMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E + CP C + A ++ LQ RSADEPM+ F C C H+W E
Sbjct: 60 AWENVDKDPGSQCPKCSNMGAYFYMLQIRSADEPMTKFCRCT--ACFHQWRE 109
>gi|375083639|ref|ZP_09730657.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
gi|374741639|gb|EHR78059.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
Length = 108
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 12/112 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME----SRVKIKRKQPLSKKEIQPIF 56
M+FCP CG+++ LP + F C C Y ++ +R KI +K +++I P+
Sbjct: 1 MKFCPKCGSIM---LPDKKK-GVFVCRKCGYEEPLDPETANRYKITQKVKHEREDI-PVI 55
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
QD + P+ ++TCP C + +A + E+QTR+ DEP +IFY C C + W
Sbjct: 56 EQD-IATLPKVKITCPKCGNDEAYWWEMQTRAGDEPSTIFYRCT--KCGYTW 104
>gi|299741058|ref|XP_001834192.2| hypothetical protein CC1G_09692 [Coprinopsis cinerea
okayama7#130]
gi|298404536|gb|EAU87595.2| hypothetical protein CC1G_09692 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC +L + ++++C CPY M SR +++ KQ + +
Sbjct: 1 MLFCPTCANIL--VISQETGVNKWACNTCPYEFPITKQMTSRTRMQLKQ------VDDVL 52
Query: 57 TQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFY 97
D M + QT+ +CP C KA +++LQ RSADEPM+ FY
Sbjct: 53 GGDEMWKHADQTQASCPKCNFDKAYFYQLQIRSADEPMTTFY 94
>gi|451847238|gb|EMD60546.1| hypothetical protein COCSADRAFT_163870 [Cochliobolus sativus
ND90Pr]
gi|451997829|gb|EMD90294.1| hypothetical protein COCHEDRAFT_1178878 [Cochliobolus
heterostrophus C5]
Length = 118
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPS--------RFSCPACPYVCNMESRVKIKRKQPLSKKEIQP 54
FCPTC ML+ P+ RF C CPY + R ++ + KKE++
Sbjct: 4 FCPTCSNMLRVSAVPPGDPTTEDFVGQNRFECLTCPYHFVINKR--YYERKYMKKKEVED 61
Query: 55 IFTQDAMMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I + +TEV CP C++ +A +++LQ RSADEPM+ FY C C W E
Sbjct: 62 ILGGKGAWDNVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKCT--QCAKEWRE 118
>gi|300708714|ref|XP_002996531.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
gi|239605840|gb|EEQ82860.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
Length = 105
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +L + ++ + F C CPY + + + + + + +D
Sbjct: 1 MFFCPLCTNILA--IDKLNIQTAFICNTCPY--QYKINMVFNKSARNNVIAVDKVLGEDE 56
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E C C KA++ ELQTRSADEPM+IFY C CK W E
Sbjct: 57 YKYASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECV--LCKTNWKE 104
>gi|430813798|emb|CCJ28877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 109
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG L +RF C CPY + + KR + +KE+ + +
Sbjct: 1 MMFCPACGNHLLIGTSFTGF-NRFECRTCPYEFPINRYLCSKR--IMKQKEVDDVLGGEG 57
Query: 61 MMEG-PQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +TE CP C + +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 58 AWDNVDKTEAQCPVMDCGNLRAYFFQIQIRSADEPMTTFYKCT--KCGHRWRE 108
>gi|213408248|ref|XP_002174895.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces japonicus yFS275]
gi|212002942|gb|EEB08602.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces japonicus yFS275]
Length = 109
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FCPTCG L + + + F C CPY + + + ++K++ + ++
Sbjct: 1 MQFCPTCGNHLIVSVDE-NGTNTFDCRTCPY--RFPISILMYHRHEFAQKQVDDVLGGKE 57
Query: 60 AMMEGPQTEVTC--PACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A QT++ C C + +A + +LQ RSADEPMS FY C C ++W E
Sbjct: 58 AWESNQQTDIPCENKNCDNRRAYFFQLQIRSADEPMSTFYRCT--ECGYQWRE 108
>gi|351714373|gb|EHB17292.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 111
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 7 CGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG-P 65
CG L E R F+C CPY+ N+ +V RK P KE+ + A E
Sbjct: 11 CGNGLIVE--EGQRCHHFACNTCPYMHNITRKV-TNRKYP-KLKEVDDVLGGSAAWENVD 66
Query: 66 QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T C +H +A + +LQTRSADE M+ FY C N C HRW +
Sbjct: 67 STAEPCLRFEHPRAYFMQLQTRSADELMTTFYKCCNAQCGHRWRD 111
>gi|255712513|ref|XP_002552539.1| KLTH0C07216p [Lachancea thermotolerans]
gi|238933918|emb|CAR22101.1| KLTH0C07216p [Lachancea thermotolerans CBS 6340]
Length = 127
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
+ FCP C ML + D + C ACPY +E V++ ++ L +KE+ +
Sbjct: 19 LSFCPHCHNMLV--ISQADSGAYALQCGACPYAFPIEG-VEVYDRKTLPRKEVDDVLG-G 74
Query: 60 AMMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT V CP C +A + +LQ RSADEPM+ FY C +C +RW E
Sbjct: 75 GWDNVDQTAVQCPNYDECGGERAYFFQLQIRSADEPMTTFYKCV--SCGNRWRE 126
>gi|169617173|ref|XP_001802001.1| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
gi|160703355|gb|EAT80807.2| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
Length = 118
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 3 FCPTCGTMLQY-ELPHMD-------RPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP 54
FCPTC +L+ ++P D +RF C CPY + R +RK + KKE++
Sbjct: 4 FCPTCSNVLRVSKVPPGDPNTEMNVGENRFECLTCPYQFVINKRY-FERKY-MKKKEVED 61
Query: 55 IFTQDAMMEG-PQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I + +T+V CP C++ +A +++LQ RSADEPM+ FY C C W E
Sbjct: 62 ILGGKGAWDNVDKTQVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKCT--KCAKEWRE 118
>gi|315230104|ref|YP_004070540.1| transcription factor [Thermococcus barophilus MP]
gi|315183132|gb|ADT83317.1| transcription factor [Thermococcus barophilus MP]
Length = 109
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKK-EIQPIFT 57
++FCP CG+++ LP R F C C Y N E+ + Q + K E PI
Sbjct: 2 VKFCPKCGSIM---LPDRKR-EVFVCRKCGYEEPLNPEAAKAYRLTQKVEHKVEDIPIIE 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
QD + P+ ++TCP C + +A + ELQTR+ DEP +IFY C C + W
Sbjct: 58 QD-LATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCT--KCGYTW 105
>gi|88602097|ref|YP_502275.1| transcription factor S [Methanospirillum hungatei JF-1]
gi|88187559|gb|ABD40556.1| DNA-directed RNA polymerase, subunit M [Methanospirillum hungatei
JF-1]
Length = 107
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG +L+ ++ F C +C + K+K +KEI + +++
Sbjct: 4 FCEKCGKLLK------NQAGSFICTSCGWEKEGHGETKMKITDKRKEKEIVIVDDTESVR 57
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P V CP C +G+A + Q RSADE F+ C N C H W E
Sbjct: 58 TLPTIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
>gi|341581249|ref|YP_004761741.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
gi|340808907|gb|AEK72064.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
Length = 110
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C +C Y + ++ + K E +P I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTKITQKVEHKPDEGIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 57 VEQDVTTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGHVW 106
>gi|209881247|ref|XP_002142062.1| DNA-directed RNA polymerase III subunit RPC10 [Cryptosporidium
muris RN66]
gi|209557668|gb|EEA07713.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Cryptosporidium muris RN66]
Length = 106
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESR-VKIKRKQPLSKKEIQPIFTQD 59
++FCP C +L + +D + C CP++ + + VK+ P +E Q +
Sbjct: 2 VQFCPHCHNILL--IREIDERTALFCQTCPFIQKLNKQIVKVTELTPKKPEEAQGDMNEI 59
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A + CP C + +A + +LQ RSADEPM+ FY C C+H+W E
Sbjct: 60 A---SAKVMAVCPKCSNTEAYFFQLQIRSADEPMTSFYTCV--KCEHKWKE 105
>gi|70935719|ref|XP_738907.1| transcription factor [Plasmodium chabaudi chabaudi]
gi|70948038|ref|XP_743577.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515491|emb|CAH84203.1| transcription factor, putative [Plasmodium chabaudi chabaudi]
gi|56523140|emb|CAH77369.1| hypothetical protein PC000189.02.0 [Plasmodium chabaudi chabaudi]
Length = 106
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM- 61
FCP C ++ L H++ C C N + ++K K E DA+
Sbjct: 4 FCPNCHNIV---LVHVENGVYLYCKTC----NFKYKIKNKIYNKYDCTEFNKTIPLDAVD 56
Query: 62 ---MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T+ CP C H +A ++ LQ RSADEP ++FY+C NC + W E
Sbjct: 57 MNNKNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICV--NCNYHWKE 106
>gi|358054003|dbj|GAA99802.1| hypothetical protein E5Q_06505 [Mixia osmundae IAM 14324]
Length = 108
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRK----QPLSKKEIQPIF 56
M FCPTC +L + + F CP CPY+ IKRK +P +K++ +
Sbjct: 1 MIFCPTCANLLIVQTSEQST-NCFGCPTCPYL------YPIKRKYYDPKPQKRKQVDDVL 53
Query: 57 T-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+DA V C C +A Y ++QTRSADEPM+ FY C C H W E
Sbjct: 54 GGEDAWKNVDSMAVPCTKKDCNGTRAYYMQIQTRSADEPMTTFYRCT--LCAHNWKE 108
>gi|212223973|ref|YP_002307209.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
gi|212008930|gb|ACJ16312.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
Length = 110
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C C Y + ++ + K E +P I
Sbjct: 1 MKFCPECGNLM---LPDRKRKV-WVCRKCGYEEPFDEEKDREKTRITQKVEHKPDEGIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P+ ++TCP C + +A + ELQTR+ DEP +IFY C C H W
Sbjct: 57 VEQDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKCT--KCGHVW 106
>gi|50289467|ref|XP_447165.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526474|emb|CAG60098.1| unnamed protein product [Candida glabrata]
Length = 100
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 24 FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCP---ACKHGKAV 80
SC +CPY +ES ++I ++ L +KE+ + QT+V CP C A
Sbjct: 14 LSCRSCPYEFPIES-IEIYDRKKLPRKEVDDVLGG-GWDNVDQTKVQCPNYDTCGGESAY 71
Query: 81 YHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +LQ RSADEPM+ FY C NC HRW E
Sbjct: 72 FFQLQIRSADEPMTTFYKCV--NCAHRWKE 99
>gi|124800991|ref|XP_001349576.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|3845145|gb|AAC71847.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 106
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C ++ L H+++ F C +C Y +++++ K K I P+ D
Sbjct: 4 FCPNCHNIV---LVHIEKGVYFYCKSCNYKYKIKNKIYNKFDCQQFNKTI-PLDAVDINN 59
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +T+ CP C + +A ++ LQ RSADEP +IFY+C C + W E
Sbjct: 60 KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICV--KCNYHWKE 106
>gi|346470035|gb|AEO34862.1| hypothetical protein [Amblyomma maculatum]
Length = 129
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + +R ++C C Y ++ K E+ I + D
Sbjct: 18 IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQEADNNCIYVNKITHEVDELTQIVS-DV 76
Query: 61 MME--GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE TCP C H +AV+ + Q+R A++ M ++Y+C N NC HRW E
Sbjct: 77 VHDPTLPRTEDHTCPKCGHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|427786401|gb|JAA58652.1| Putative rna polymerase ii subunit [Rhipicephalus pulchellus]
Length = 129
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + +R ++C C Y ++ K E+ I + D
Sbjct: 18 IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQEADNNCIYVNKITHEVDELTQIVS-DV 76
Query: 61 MME--GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE TCP C H +AV+ + Q+R A++ M ++Y+C N NC HRW E
Sbjct: 77 VHDPTLPRTEDHTCPKCAHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|397651491|ref|YP_006492072.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
gi|393189082|gb|AFN03780.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
Length = 109
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQPIFT- 57
M+FCP CG+++ +P R F C C Y N E +R + + + + +
Sbjct: 1 MKFCPKCGSIM---IPDRRR-GVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVI 56
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P +VTCP C H +A + ELQTR+ DEP +IFY C K C + W
Sbjct: 57 EQEVSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVW 105
>gi|344228978|gb|EGV60864.1| zinc beta-ribbon protein [Candida tenuis ATCC 10573]
Length = 101
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG-PQTEVTCP--ACKHGK 78
++F CP CPY + S ++ K+ L +KE+ + + + QT CP +C K
Sbjct: 12 NKFYCPTCPYEFKI-SGFQMFDKKVLPRKEVDDVLGGEGAWDNVDQTPAQCPRDSCGGDK 70
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A + +LQ RSADEPM+ FY C C H+W E
Sbjct: 71 AYFFQLQIRSADEPMTTFYKCV--KCSHQWRE 100
>gi|428169791|gb|EKX38722.1| DNA-directed RNA polymerase III subunit RPC11 [Guillardia theta
CCMP2712]
Length = 109
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L E + RF+C CPY + KIK+ PL +K++ + D+
Sbjct: 2 FCPYCANLLVVE--PASQGMRFACKTCPY--EHKILKKIKKTTPLEQKKVDDVLG-DSFA 56
Query: 63 EGPQTEVT--CPACKHGKAVYHELQTRSADEPMSIFYMCA-NKNCKHRWNE 110
T+V CP C H KA + +Q RSADEP + FY CA C + W E
Sbjct: 57 NASMTDVIGGCPKCGHPKAYFFSIQIRSADEPATRFYRCARGAECTYTWKE 107
>gi|240103105|ref|YP_002959414.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
gi|239910659|gb|ACS33550.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
Length = 110
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C +C Y + ++ + K E +P I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTRITQKVEHKPDEGIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + ELQTR+ DEP +IFY C C + W
Sbjct: 57 VEQDLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCT--KCGYVW 106
>gi|358379290|gb|EHK16970.1| hypothetical protein TRIVIDRAFT_82826 [Trichoderma virens Gv29-8]
Length = 110
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L L ++R +R C CPY + V +R +KE + +F
Sbjct: 2 LLFCPHCANILTVSLT-LNRTNRLECRTCPYEHAITDPVFSRR--VFERKEREDVFGGPG 58
Query: 61 MMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q ++ CP C +A + ++Q RSADEPM+ F+ C C HRW E
Sbjct: 59 AWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKCM--TCGHRWRE 109
>gi|84996923|ref|XP_953183.1| RNA polymerase small subunit [Theileria annulata strain Ankara]
gi|65304179|emb|CAI76558.1| RNA polymerase small subunit, putative [Theileria annulata]
Length = 108
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C ++L +E + S FSC C Y + + K+ + +F +
Sbjct: 4 FCPLCHSILYFESKEYNN-SSFSCLRCSYNLPVTKNYYKETVCTNVKEAGKTLFEANEFQ 62
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ CP+C + +A + +QTRSADEPM+ F++C C RW E
Sbjct: 63 HAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCT--GCLKRWKE 108
>gi|321468341|gb|EFX79326.1| hypothetical protein DAPPUDRAFT_231046 [Daphnia pulex]
Length = 127
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C ML + +R ++C C + ++ K E+ I D
Sbjct: 16 IRFCPSCNNMLYPKEDKENRALLYACRNCDFKTLADNHCVYVNKIMHEIDELTQIVA-DV 74
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H +AV+ + Q+R A+E M ++Y+C N NC HRW E
Sbjct: 75 ISDPTLPRTEDHPCPKCTHREAVFFQSQSRRAEEEMRLYYVCTNSNCTHRWTE 127
>gi|241556231|ref|XP_002399649.1| RNA polymerase II subunit, putative [Ixodes scapularis]
gi|215499697|gb|EEC09191.1| RNA polymerase II subunit, putative [Ixodes scapularis]
gi|442752309|gb|JAA68314.1| Putative rna polymerase ii subunit 9 [Ixodes ricinus]
Length = 129
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + +R ++C C Y ++ K E+ I + D
Sbjct: 18 IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQVADNNCIYVNKITHEVDELTQIVS-DV 76
Query: 61 MME--GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE TCP C H +AV+ + Q+R A++ M ++Y+C N NC HRW E
Sbjct: 77 VHDPTLPRTEDHTCPKCSHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|315425737|dbj|BAJ47392.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315425785|dbj|BAJ47439.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315427642|dbj|BAJ49239.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|343484624|dbj|BAJ50278.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
Length = 110
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESR---VKIKRKQPLSKKEIQPIFT 57
MEFCP CG L + + C C Y +E +K++++ +SK +
Sbjct: 1 MEFCPKCGKTLTPS--RVGGKAMLVCKRCGYQKPLEGEKVVIKLEKENTVSKNVAAIVEA 58
Query: 58 QDAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++A + P T +V CP C H +A + +QTRSADEPM+ F+ C C H W E
Sbjct: 59 EEAPL--PTTSDVVCPQCGHNEAKWWTVQTRSADEPMTQFFRCV--KCGHTWRE 108
>gi|389852512|ref|YP_006354746.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
gi|388249818|gb|AFK22671.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
Length = 110
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQP-IFT 57
++FCP CG+++ +P R F C C Y N E +R + + K + I
Sbjct: 2 VKFCPKCGSIM---IPDKKR-GVFVCRKCGYEEPINPEDAKAYRRTEEVKHKPDEGVIVV 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ P +VTCP C H +A + ELQTR+ DEP +IFY C K C + W
Sbjct: 58 EQDFSTLPTAKVTCPRCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVW 106
>gi|195053920|ref|XP_001993874.1| GH18685 [Drosophila grimshawi]
gi|193895744|gb|EDV94610.1| GH18685 [Drosophila grimshawi]
Length = 129
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKDNKTLMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|3024569|sp|Q56254.1|RPOM_THECE RecName: Full=DNA-directed RNA polymerase subunit M
gi|443693|gb|AAA72052.1| RNA polymerase [Thermococcus celer]
Length = 110
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FCP CG ++ LP R + C +C Y + R K KQ + K + I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVV 56
Query: 58 QDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ ++ P T++TCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 57 IEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGHTW 106
>gi|358398063|gb|EHK47421.1| hypothetical protein TRIATDRAFT_93270 [Trichoderma atroviride IMI
206040]
Length = 110
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L L ++R +R C CPY + V +R +KE + +F
Sbjct: 2 LLFCPHCANILTVSLT-LNRTNRLECRTCPYEHAITDPVFSRR--VFERKEREDVFGGPG 58
Query: 61 MMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q ++ CP C +A + ++Q RSADEPM+ F+ C C HRW E
Sbjct: 59 AWDNAQKSKAQCPNEGCTGEEAAFFQVQIRSADEPMTSFFKCM--TCGHRWRE 109
>gi|340516425|gb|EGR46674.1| predicted protein [Trichoderma reesei QM6a]
Length = 110
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L L ++R +R C CPY + V +R +KE + +F
Sbjct: 2 LLFCPHCANILTVSLT-INRTNRLECRTCPYEHAITDPVFSRR--VFERKEREDVFGGPG 58
Query: 61 MMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q ++ CP C +A + ++Q RSADEPM+ F+ C C HRW E
Sbjct: 59 AWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKCM--TCGHRWRE 109
>gi|409728138|ref|ZP_11271009.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|448723108|ref|ZP_21705633.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|445788063|gb|EMA38785.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
Length = 106
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C + + + ++E + I D
Sbjct: 1 MEFCDECGSMMKTE------GDEWVCGSCGFAKPRNAETEAAMTTTQGQEETEVIDVSDV 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G P TEV C C + +A ++ Q RSADE + F++C NC+HRW E
Sbjct: 55 DDRGLPTTEVHCDECGNDEAYWYMQQIRSADESETRFFVCT--NCEHRWRE 103
>gi|194746269|ref|XP_001955603.1| GF16163 [Drosophila ananassae]
gi|190628640|gb|EDV44164.1| GF16163 [Drosophila ananassae]
Length = 129
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKE---IQP 54
+ FC C ML P D+ ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNML---YPKEDKDNKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVP 74
Query: 55 IFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 75 DVISDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|223478880|ref|YP_002583424.1| transcription factor S [Thermococcus sp. AM4]
gi|214034106|gb|EEB74932.1| Transcription factor S [Thermococcus sp. AM4]
Length = 110
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C +C Y + ++ + K E +P I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTRITQKVEHRPDEGIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + ELQTR+ DEP +IFY C C + W
Sbjct: 57 VEQDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCT--KCGYVW 106
>gi|57640468|ref|YP_182946.1| DNA-directed RNA polymerase subunit M [Thermococcus kodakarensis
KOD1]
gi|57158792|dbj|BAD84722.1| archaeal transcription factor S [Thermococcus kodakarensis KOD1]
Length = 110
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C +C Y + ++ + K E +P I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTKITKKVEHKPDEEIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + E+QTR+ DEP +IFY C C + W
Sbjct: 57 VEQDLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGYTW 106
>gi|238598946|ref|XP_002394740.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
gi|215464278|gb|EEB95670.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
Length = 70
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 35 MESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPM 93
M SR K+KRK E+ + + M + T +CP C +G+A +++LQ RSADEPM
Sbjct: 1 MTSRTKLKRK------EVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPM 54
Query: 94 SIFYMCANKNCKHRWNE 110
+ FY C C H+W E
Sbjct: 55 TTFYRCT--ACAHQWRE 69
>gi|195444421|ref|XP_002069859.1| GK11344 [Drosophila willistoni]
gi|194165944|gb|EDW80845.1| GK11344 [Drosophila willistoni]
Length = 129
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|125774797|ref|XP_001358650.1| GA17176 [Drosophila pseudoobscura pseudoobscura]
gi|195145378|ref|XP_002013673.1| GL23270 [Drosophila persimilis]
gi|54638389|gb|EAL27791.1| GA17176 [Drosophila pseudoobscura pseudoobscura]
gi|194102616|gb|EDW24659.1| GL23270 [Drosophila persimilis]
Length = 129
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|218506065|gb|ACK77674.1| SD23432p [Drosophila melanogaster]
Length = 136
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 25 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 84
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 85 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 136
>gi|66735410|gb|AAY53887.1| DNA-dependent RNA polymerase subunit M [Thermococcus thioreducens]
Length = 110
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR-FSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIF 56
M+FCP CG ++ LP DR + + C +C Y + R K KQ + K + I
Sbjct: 1 MKFCPKCGNLM---LP--DRKKKVWVCRSCGYEEPFDEKKDREKTVIKQKVEHKPDEGII 55
Query: 57 TQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ ++ P T++TCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 56 VVEQDVKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRCT--KCGHTW 106
>gi|24646802|ref|NP_731898.1| RNA polymerase II 15kD subunit, isoform A [Drosophila melanogaster]
gi|386765759|ref|NP_001247099.1| RNA polymerase II 15kD subunit, isoform B [Drosophila melanogaster]
gi|194900739|ref|XP_001979913.1| GG16847 [Drosophila erecta]
gi|195329032|ref|XP_002031215.1| GM24158 [Drosophila sechellia]
gi|195501642|ref|XP_002097880.1| GE24228 [Drosophila yakuba]
gi|195570939|ref|XP_002103461.1| GD18953 [Drosophila simulans]
gi|81175192|sp|P36958.2|RPB9_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II 15.1 kDa polypeptide
gi|7299869|gb|AAF55045.1| RNA polymerase II 15kD subunit, isoform A [Drosophila melanogaster]
gi|190651616|gb|EDV48871.1| GG16847 [Drosophila erecta]
gi|194120158|gb|EDW42201.1| GM24158 [Drosophila sechellia]
gi|194183981|gb|EDW97592.1| GE24228 [Drosophila yakuba]
gi|194199388|gb|EDX12964.1| GD18953 [Drosophila simulans]
gi|383292703|gb|AFH06417.1| RNA polymerase II 15kD subunit, isoform B [Drosophila melanogaster]
Length = 129
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|195399658|ref|XP_002058436.1| GJ14413 [Drosophila virilis]
gi|194141996|gb|EDW58404.1| GJ14413 [Drosophila virilis]
Length = 129
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKE---IQP 54
+ FC C ML P D+ ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNML---YPKEDKDNKILMYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVP 74
Query: 55 IFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 75 DVISDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|324527896|gb|ADY48854.1| DNA-directed RNA polymerase II subunit RPB9 [Ascaris suum]
Length = 156
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMD-RPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIF 56
MEFC C +L Y L +++ R SC C Y+ ++ R+ + E I P
Sbjct: 46 MEFCSECNNLL-YPLENVEKRVLMNSCRTCGYLEKAKNPCVYVRRVETEQDELARINPDV 104
Query: 57 TQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
D M P+T V CPAC AVY + + +SA+E MS FY+C N+NC HRW
Sbjct: 105 ISDPTM--PRTNVHPCPACGSMDAVYFQGRLKSAEEKMSPFYVCRNRNCLHRW 155
>gi|254580487|ref|XP_002496229.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
gi|238939120|emb|CAR27296.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
Length = 110
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C ML + +C +CPY +E +++ ++ L +KE+ +
Sbjct: 2 LSFCPLCNNMLLIASSDSGIYT-LTCKSCPYEFPIEG-IEVYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+V CP C A + +LQ RSADEPM+ F+ C NC +RW E
Sbjct: 59 WDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKCV--NCGNRWKE 109
>gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodium knowlesi strain H]
gi|193807800|emb|CAQ38505.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 106
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM- 61
FCP C ++ L +++ F C C N + ++K K +++ DA+
Sbjct: 4 FCPNCHNIV---LVNIENGVYFYCKTC----NFKYKIKNKIFNKFDCRDLNKTIPLDAVD 56
Query: 62 ---MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+T+ CP C H +A ++ +Q RSADEP ++FY+C C H W E
Sbjct: 57 MNNKNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYICI--KCNHHWKE 106
>gi|14521579|ref|NP_127055.1| DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
gi|5458798|emb|CAB50285.1| tfs archaeal transcription factor S [Pyrococcus abyssi GE5]
gi|380742189|tpe|CCE70823.1| TPA: DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
Length = 110
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKK-EIQPIFT 57
++FCP CG+++ +P R F C C Y N E KR + + K + I
Sbjct: 2 VKFCPKCGSIM---IPDKKR-GVFVCRRCGYEEPINPEDAKAYKRTEEVKHKPDEGVIVV 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ P +VTCP C + +A Y ELQTR+ DEP +IFY C K C + W
Sbjct: 58 EQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKC--KRCGYVWR 107
>gi|432328900|ref|YP_007247044.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135609|gb|AGB04878.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 104
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP CG+++ + ++ C C Y +E+ K + +KE+ I +Q+
Sbjct: 1 MMFCPKCGSLMH------PKDGKWVCSNCGYEIPIENEEKKEIVAEAKEKEMIVISSQEE 54
Query: 61 MMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P E V CP C H A + QTR+ADEP + FY+C C HRW E
Sbjct: 55 LKALPYDESVMCPKCGHVGAHWMLQQTRAADEPETRFYICP--KCGHRWRE 103
>gi|328872688|gb|EGG21055.1| RNA polymerase I subunit [Dictyostelium fasciculatum]
Length = 264
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP-IFTQDAM 61
FCPTC ++L Y + +R CP C Y + +S +K ++ +S +P ++
Sbjct: 163 FCPTCNSLLSY---VSEFATRIDCPTCSYTAD-KSILKGQKTTSVSNLFKKPKALDEEEA 218
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
G + CP C HGK + QTRSADE +IFY C
Sbjct: 219 DRGAVIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDC 256
>gi|15922591|ref|NP_378260.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii
str. 7]
gi|15623381|dbj|BAB67369.1| archaeal transcription factor S [Sulfolobus tokodaii str. 7]
Length = 112
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-SRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQPIFT 57
M+FCP CG+++ +P D + + CP C Y +KIK S KE +
Sbjct: 1 MKFCPKCGSIM---VPKKDNGKTMYKCPKCGYEEESTSSGSMKIKTVVKHSIKEKTLVVD 57
Query: 58 QDAMMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA G Q VTCPAC + +A + LQTR ADEP + FY C C W E
Sbjct: 58 GDAPPAGAQITKGVTCPACGNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 110
>gi|409095443|ref|ZP_11215467.1| transcription elongation factor S (TFS_arch) [Thermococcus zilligii
AN1]
Length = 110
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C C + E ++ + K E +P +
Sbjct: 1 MKFCPKCGNLM---LPDRRRKV-WVCRVCGHEEPFEEEKDREKTRITQKVEHKPNEEIVV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + ELQTR+ DEP +IFY C C H W
Sbjct: 57 IEQDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYRCT--RCGHVW 106
>gi|116192953|ref|XP_001222289.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88182107|gb|EAQ89575.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 111
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP C +L L MD +R C CPY +E + ++ P +KE + +F
Sbjct: 5 FCPYCANLLI--LSRMDTGGNRLECRTCPYQHAIEMPIYSRKNFP--RKEKEDVFGGPGA 60
Query: 62 MEGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CP C +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 61 WDNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKCM--TCGHRWRE 110
>gi|296414581|ref|XP_002836977.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632824|emb|CAZ81168.1| unnamed protein product [Tuber melanosporum]
Length = 111
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C L +R C CPY ++ ++ + +KE++ + +
Sbjct: 4 FCPQCSNSLTVSRAPETGTNRLECRTCPYQFLLDQ--AYYERKSMKRKEVEDVLGGEGAW 61
Query: 63 EG-PQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ QT+ CP C +A ++ +Q RSADEPM+ FY C +C H+W E
Sbjct: 62 DNVDQTDAQCPVDECGGTRAYFYMVQIRSADEPMTTFYKCV--SCAHKWRE 110
>gi|330936351|ref|XP_003305354.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
gi|311317653|gb|EFQ86540.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
Length = 108
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAMMEGPQTEVTCP--ACKHGK 78
+RF C CPY +E R +RK + KK+++ + +DA +TEV CP C++ +
Sbjct: 21 NRFVCLTCPYQFVIEGRY-FERKY-MKKKDVEDVIGGKDAWANVDKTEVQCPNEKCRNHE 78
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +++LQ RSADEPM+ FY C C W E
Sbjct: 79 AYWYQLQIRSADEPMTAFYKCT--QCGKEWRE 108
>gi|429190974|ref|YP_007176652.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|448327460|ref|ZP_21516788.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
gi|429135192|gb|AFZ72203.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|445608558|gb|ELY62397.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
Length = 102
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + R+ C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGRWECGSCGYT---EPKGDADQYVVTDSQEASEIIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q R+ADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMQQIRAADESETRFFICS--ECEHKWRE 99
>gi|365761585|gb|EHN03230.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 110
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C +L + C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPSCNNLLLITSGDSGVYT-LECRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+ CP C A + +LQ RSADEPM+ FY C NC +RW E
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGNRWKE 109
>gi|18977358|ref|NP_578715.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM
3638]
gi|18893037|gb|AAL81110.1| DNA-directed RNA polymerase subunit m [Pyrococcus furiosus DSM
3638]
Length = 110
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQPIFT- 57
++FCP CG+++ +P R F C C Y N E +R + + + + +
Sbjct: 2 VKFCPKCGSIM---IPDRRR-GVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVI 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P +VTCP C H +A + ELQTR+ DEP +IFY C K C + W
Sbjct: 58 EQEVSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVW 106
>gi|448739405|ref|ZP_21721420.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
gi|445800000|gb|EMA50369.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
Length = 106
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C C Y + + ++E + I DA
Sbjct: 1 MEFCDECGSMMKTD------DGVWVCDNCGYTKPRDDAKEAAMTTTQGQEESEIIDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G P TEV CP C + +A ++ Q RSADE + F++C C+HRW E
Sbjct: 55 ENRGLPTTEVHCPECGNDEAYWYMQQIRSADESETRFFVCT--ECEHRWRE 103
>gi|71029042|ref|XP_764164.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351118|gb|EAN31881.1| hypothetical protein TP04_0529 [Theileria parva]
Length = 108
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C ++L +E ++ S FSC C Y + + K+ + +F +
Sbjct: 4 FCPLCHSILYFEQKPENK-SSFSCLRCTYNLPVTKDYHKETVCTNVKEAGKTLFEANEFK 62
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ CPAC + +A + +QTRSADEPM+ F++C C RW E
Sbjct: 63 HAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVCT--ACLKRWKE 108
>gi|238601001|ref|XP_002395292.1| hypothetical protein MPER_04676 [Moniliophthora perniciosa FA553]
gi|215465781|gb|EEB96222.1| hypothetical protein MPER_04676 [Moniliophthora perniciosa FA553]
Length = 92
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCPTC +L + ++++C CPY + + + K L +KE+ + D
Sbjct: 1 MLFCPTCANLLV--VSSETGFNKWACNTCPYEFPITKQARSSTK--LKRKEVDDVLGGDE 56
Query: 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMS 94
M + T +CP C +G+A +++LQ RSADEPM+
Sbjct: 57 MWKHADSTAASCPRCNNGQAYFYQLQIRSADEPMT 91
>gi|390962022|ref|YP_006425856.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
gi|390520330|gb|AFL96062.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
Length = 110
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
M+FCP CG ++ LP R + C +C + + + ++ + K E +P I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGHEEPFDEQKDREKTRITQKVEHKPDEGIIV 56
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P T+VTCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 57 VEQDVKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGHVW 106
>gi|440913471|gb|ELR62921.1| DNA-directed RNA polymerase III subunit RPC10, partial [Bos
grunniens mutus]
Length = 71
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 50 KEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
KE+ + A E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW
Sbjct: 10 KEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 69
Query: 109 NE 110
+
Sbjct: 70 RD 71
>gi|189188138|ref|XP_001930408.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972014|gb|EDU39513.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 108
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCP--ACKHGKA 79
+RF C CPY +E R +RK K I +DA +TEV CP C++ +A
Sbjct: 21 NRFVCLTCPYQFVIEGRY-FERKYMKKKDVDDVIGGKDAWANVDKTEVQCPNEKCRNHEA 79
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+++LQ RSADEPM+ FY C C W E
Sbjct: 80 YWYQLQIRSADEPMTAFYKCT--QCAKEWRE 108
>gi|389645943|ref|XP_003720603.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|86196830|gb|EAQ71468.1| hypothetical protein MGCH7_ch7g875 [Magnaporthe oryzae 70-15]
gi|351637995|gb|EHA45860.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|440472131|gb|ELQ41014.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
Y34]
gi|440479564|gb|ELQ60324.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
P131]
Length = 110
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP+C +L + +R C CPY + + RK+ ++KE + +F
Sbjct: 4 FCPSCANVLTVSAMETGK-NRLECRTCPYEFAINEPL-FSRKE-FARKEREDVFGGPGAW 60
Query: 63 EGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CPA C +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 61 DNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKCM--TCGHRWRE 109
>gi|246798|gb|AAB21674.1| RNA polymerase II 15-kda subunit [Drosophila melanogaster]
Length = 129
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|159040983|ref|YP_001540235.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
gi|157919818|gb|ABW01245.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
Length = 115
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELPHMD-RPSRFSCPACPYVCNMESRVKIKRKQPLSKK-EIQPIFTQ 58
++FCP CG++++ P+ + + CP C YV + + V + + + K + +P+
Sbjct: 7 IKFCPKCGSIMK---PYRNGNKVTWRCPKCGYVEDSSTTVPLVERTVIEHKPDEKPVVLT 63
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A P+ +VTCP C + +A + QTR+ADEP + FY C C + W E
Sbjct: 64 KANDNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRCT--RCGYTWRE 113
>gi|405945747|gb|EKC17458.1| DNA-directed RNA polymerase I subunit RPA12 [Crassostrea gigas]
Length = 113
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME--SRVKIKRKQPLSKKE-IQPIFT 57
+EFCPTCGT+L LP MD +C C Y +++ VKI ++ E +Q
Sbjct: 12 LEFCPTCGTILP--LPGMD--DYVTCKLCGYKIHVQEFDGVKITSSIVFNRPETLQTNAE 67
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+ GP + C C H K Y QTRSADE ++F+ C N
Sbjct: 68 EGETSSGPLADRKCSKCGHEKMSYTTRQTRSADEGQTVFFTCLN 111
>gi|332373524|gb|AEE61903.1| unknown [Dendroctonus ponderosae]
Length = 130
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C Y + +S+ K E+ I + D
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDYKQHADSKCIYVNKIMHEIDELTHIVS-DV 77
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C+H +AV+ + QTR A+E M ++Y+C N +C HRW E
Sbjct: 78 ISDPTLPRTEDHHCPVCQHREAVFFQAQTRRAEEEMRLYYVCTNPHCAHRWTE 130
>gi|403223885|dbj|BAM42015.1| RNA polymerase small subunit [Theileria orientalis strain Shintoku]
Length = 108
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C ++L +E + S F+C C Y + + K + + +
Sbjct: 4 FCPLCHSILYFEAKEFSQ-SSFTCLRCQYFMPITKNYYRATLYNIGKDVDKTPLSTNEFE 62
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ CP C + +A + +QTRSADEPM+ F++C +C RW E
Sbjct: 63 HSPKIPAVCPYCNNNEAYFMSIQTRSADEPMTQFFVCT--SCTKRWRE 108
>gi|169236410|ref|YP_001689610.1| DNA-directed RNA polymerase subunit M2 [Halobacterium salinarum R1]
gi|167727476|emb|CAP14264.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + E ++ ++DA
Sbjct: 1 MQFCDECGSMMHKQDGEM------VCASCGASADSEGSEGFVETASQDTSDVIET-SEDA 53
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG P E TCP C HG+A Y QT SADEP + F+ C ++C +RW +
Sbjct: 54 ASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKC--QDCGNRWRD 102
>gi|337284503|ref|YP_004623977.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
gi|334900437|gb|AEH24705.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
Length = 110
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQP-IFT 57
++FCP CG+++ +P ++ F C C Y N E +R + + + + I
Sbjct: 2 VKFCPKCGSIM---VPDKNK-GVFVCRRCGYEEPINPEDAKAYRRTEEVKHRPDEGVIVV 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P +VTCP C H +A + ELQTR+ DEP +IF+ C K C + W
Sbjct: 58 EQELSTLPTAKVTCPKCGHNEAYWWELQTRAGDEPSTIFFKC--KRCGYVW 106
>gi|448301924|ref|ZP_21491913.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
gi|445583132|gb|ELY37466.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
Length = 102
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + R+ C +C + + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGRWECGSCGFT---KPKGDADEYIVTDDQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q RSADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDALCPECGHDRAYWYMQQIRSADESETRFFICS--ECEHKWRE 99
>gi|66806555|ref|XP_637000.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60465415|gb|EAL63500.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 111
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP-IFT-Q 58
M FCP C ML + D +R+ C CPY+ ++++ K+ K PL +K I +F +
Sbjct: 1 MLFCPLCANMLLIDPDLQD--TRYFCQTCPYIFHIKN--KVVTKVPLQRKIIDSDVFGGE 56
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A EV C C++ +A E+Q +P + +Y C N C+++W +
Sbjct: 57 EAWKSADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKNPGCENQWQK 108
>gi|367021154|ref|XP_003659862.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
gi|347007129|gb|AEO54617.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
Length = 111
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPS-RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP C +L L M+ S R C CPY ++ + ++ P +KE + +F
Sbjct: 5 FCPYCANLLI--LSRMETGSNRLECRTCPYQHAIDMPIYSRKNFP--RKEKEDVFGGPGA 60
Query: 62 MEGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q +V CP C +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 61 WDNAQKGKVQCPTSNCSGDEAAFFQVQIRSADEPMTTFYKCM--TCGHRWRE 110
>gi|7327286|gb|AAB29028.2| RNA polymerase II subunit 9 [Drosophila melanogaster]
Length = 129
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gi|149623576|ref|XP_001520478.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like,
partial [Ornithorhynchus anatinus]
Length = 68
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
KE+ + A E + P C+H +A + ++QTRSADEPM+ FY C N C HRW
Sbjct: 10 KEVDDVLGGAAAWENVDSTSRAPKCEHPRAYFMQIQTRSADEPMTTFYKCCNVQCGHRW 68
>gi|333988479|ref|YP_004521086.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
gi|333826623|gb|AEG19285.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
Length = 105
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM--ESRVKIKRKQPLSKKEIQPIFTQ 58
MEFCP CGT++ P D F C C Y ++ ES + K + + KE IFT
Sbjct: 1 MEFCPKCGTVM---FPQGDC---FECKKCGYKEDITKESMSEYKVSEKVKAKE-SIIFTS 53
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T+ CP CK+ +A + QTR ADE + F C C + W E
Sbjct: 54 DDIQTLPTTKAICPKCKNKEASWWLQQTRRADESETRFLRCT--KCGYTWRE 103
>gi|327307734|ref|XP_003238558.1| RNA polymerase III subunit C11 [Trichophyton rubrum CBS 118892]
gi|326458814|gb|EGD84267.1| RNA polymerase III subunit C11 [Trichophyton rubrum CBS 118892]
gi|326473818|gb|EGD97827.1| RNA polymerase III subunit C11 [Trichophyton tonsurans CBS 112818]
gi|326478332|gb|EGE02342.1| DNA-directed RNA polymerase III subunit RPC10 [Trichophyton equinum
CBS 127.97]
Length = 117
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQY-ELPHMDR----PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L + P R +RF C CPY ++ R +RK+ + +KE+ +
Sbjct: 3 LTFCPNCSNALTISKAPPTSRYPAGVNRFECRTCPYQYALD-RTYFERKE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C+ +A + +LQ RSADEPM+ FY C+ C RW E
Sbjct: 61 LGGKDEWKNAESMPAQCPAEGCEGDRAFFFQLQIRSADEPMTTFYKCS--VCDARWRE 116
>gi|14590548|ref|NP_142616.1| DNA-directed RNA polymerase subunit M [Pyrococcus horikoshii OT3]
gi|3257072|dbj|BAA29755.1| 110aa long hypothetical transcription-associated protein
[Pyrococcus horikoshii OT3]
Length = 110
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKK-EIQPIFT 57
++FCP CG+++ +P R F C C Y N E +R + + K + I
Sbjct: 2 VKFCPRCGSIM---IPDKKR-GVFVCRKCGYEEPINPEDAKAYRRTEEIKHKPDEGVIVI 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ P +VTCP C + +A Y E+QTR+ DEP +IFY C K C + W
Sbjct: 58 EQDFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKC--KRCGYVWR 107
>gi|209732138|gb|ACI66938.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 93
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 50 KEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
KE+ + A E T CP C+H +A + ++QTRSADEPM+ FY C N C HRW
Sbjct: 32 KEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRW 91
Query: 109 NE 110
+
Sbjct: 92 RD 93
>gi|299755285|ref|XP_002912086.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298411155|gb|EFI28592.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 124
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQP------LSKKEIQ 53
FCP CGT+L +LP D + +C C + + E+ V R P L +K
Sbjct: 11 FCPNCGTLL--DLP-KDGEAIVTCEQCHHEEPASSYENIVITTRSHPDAFPSPLQQKRKT 67
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
D +G CP+C H +A E+Q RSADE +IFY CA +CKH W
Sbjct: 68 LTKRHDQGDQGTLVAEKCPSCGHMEAYSKEMQLRSADEGSTIFYTCA--SCKHGW 120
>gi|6723838|emb|CAB66386.1| archaeal transcription factor S [Methanothermococcus
thermolithotrophicus]
Length = 105
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
+EFCP C ++ LP + R C C + + N ++K K K+E+ I
Sbjct: 2 VEFCPKCNNIM---LP---KNGRLKCTVCGFEEELGNRTEEYELKEKIEAKKQEVTVIED 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T + CP+C + +A + QTR ADEP + FY C K C H W E
Sbjct: 56 VDTL---PTTRIECPSCGNMEASWWLQQTRCADEPETRFYKC--KKCGHTWRE 103
>gi|448727240|ref|ZP_21709607.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
gi|445791665|gb|EMA42301.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
Length = 106
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C C Y + + ++E + I DA
Sbjct: 1 MEFCDECGSMMKTD------DGVWVCDNCGYTKPRDDAKEAAMTTTQGQEETEIIDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G P TEV C C + +A ++ Q RSADE + F++C C+HRW E
Sbjct: 55 ENRGLPTTEVHCSECGNDEAYWYMQQIRSADESETRFFVCT--ECEHRWRE 103
>gi|269865738|ref|XP_002652029.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
gi|220063290|gb|EED42028.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
Length = 95
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 26 CPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
CP C Y N S K++ + LS + IF + + G + CP C HG+A++ E+Q
Sbjct: 14 CPNCKYE-NKYSETKLE-SEVLSPTKTDEIFEKPSGELGNFEAIDCPRCGHGRALFKEVQ 71
Query: 86 TRSADEPMSIFYMCANKNCKHRWNE 110
TRSADE ++FY C C+H W +
Sbjct: 72 TRSADEATTVFYQCV--LCEHNWRQ 94
>gi|448715566|ref|ZP_21702424.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
gi|445787810|gb|EMA38547.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
Length = 102
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT---EPKGDADQYVVTDSQEASEIIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q R+ADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDANCPECGHDRAYWYMQQIRAADESETRFFICS--ECEHKWRE 99
>gi|448678561|ref|ZP_21689568.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
gi|445772548|gb|EMA23593.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
Length = 108
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY--VCNMESRVKIK-RKQPLSKKEIQPIFT 57
MEFC CG+M++ + R+ C +C Y N E+ ++ Q + E+
Sbjct: 1 MEFCDECGSMMKTD------DERWVCGSCGYEKARNAETEQEMAVTTQGQEESEVVDTSE 54
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA GP T CP C + +A Y Q R+ADE + F+ C C+H+W E
Sbjct: 55 VDAEDMGPTTGARCPECGNERAFYEMKQIRAADESETRFFTCT--ECEHKWRE 105
>gi|453088666|gb|EMF16706.1| hypothetical protein SEPMUDRAFT_34035 [Mycosphaerella populorum
SO2202]
Length = 121
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 3 FCPTCGTMLQY-ELP----------HMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE 51
FCP+C ML ++P H+ + +RF C CPY ++ R ++ L K+
Sbjct: 4 FCPSCSNMLIVSQIPSFHTAPEDSMHIGK-NRFECRTCPYQMVLDRRYYERKNMKL--KD 60
Query: 52 IQPIFT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ I D+ QTE CPA C+ A + ++Q RSADEPM+ FY C C W
Sbjct: 61 VGDILGGADSWKNVDQTEAKCPAEGCESRNAYFRQVQIRSADEPMTRFYRCV--ECTREW 118
Query: 109 NE 110
E
Sbjct: 119 RE 120
>gi|323305599|gb|EGA59340.1| Rpc11p [Saccharomyces cerevisiae FostersB]
gi|323309844|gb|EGA63047.1| Rpc11p [Saccharomyces cerevisiae FostersO]
gi|323334176|gb|EGA75559.1| Rpc11p [Saccharomyces cerevisiae AWRI796]
gi|323338304|gb|EGA79533.1| Rpc11p [Saccharomyces cerevisiae Vin13]
gi|323349328|gb|EGA83553.1| Rpc11p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355738|gb|EGA87553.1| Rpc11p [Saccharomyces cerevisiae VL3]
gi|365766551|gb|EHN08047.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 100
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 24 FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCP---ACKHGKAV 80
+C +CPY +E ++I ++ L +KE+ + QT+ CP C A
Sbjct: 14 LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-GWDNVDQTKTQCPNYDTCGGESAY 71
Query: 81 YHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +LQ RSADEPM+ FY C NC HRW E
Sbjct: 72 FFQLQIRSADEPMTTFYKCV--NCGHRWKE 99
>gi|55377133|ref|YP_134983.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|55229858|gb|AAV45277.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
Length = 108
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY--VCNMESRVKIK-RKQPLSKKEIQPIFT 57
MEFC CG+M++ + R+ C +C Y N E+ ++ Q + E+
Sbjct: 1 MEFCDECGSMMKTD------DERWVCGSCGYEKARNAEAEQEMAVTTQGQEESEVVDTSE 54
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA GP T CP C + +A Y Q R+ADE + F+ C C+H+W E
Sbjct: 55 VDAEDMGPTTGARCPECGNERAFYEMKQIRAADESETRFFTCT--ECEHKWRE 105
>gi|347522734|ref|YP_004780304.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
gi|343459616|gb|AEM38052.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
Length = 114
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQP 54
M+FCP CGT++ + + CP C + ++ SRV + + K+++
Sbjct: 1 MKFCPRCGTLMAPR--RENEQVVYVCPKCGHREGAAGAGDVASRVLVTTIKHSEKEKLVV 58
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I + P+T + CP C H +A Y +QTR ADEP + FY C C H W E
Sbjct: 59 IESNMEEKLLPKTRIQCPRCSHDEAYYWVVQTRRADEPPTRFYKCT--KCGHVWRE 112
>gi|407924358|gb|EKG17410.1| Zinc finger TFIIS-type protein [Macrophomina phaseolina MS6]
Length = 121
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 3 FCPTCGTMLQYEL---------PHMD--RPSRFSCPACPYVCNMESRVKIKRKQPLSKKE 51
FCP C L P D +RF C +CPY ++ R ++ + +KE
Sbjct: 4 FCPACSNALTVSRVPDSVPDNSPDADLRGKNRFECRSCPYQYVLDRR--YYERKSMKRKE 61
Query: 52 IQPIFT-QDAMMEGPQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
++ + +D+ QTEV CP C +A ++++Q RSADEPM+ F+ C C +W
Sbjct: 62 VEDVLGGKDSWENVDQTEVQCPNPQCGGERAYFYQIQIRSADEPMTSFFKCT--KCAKQW 119
Query: 109 NE 110
E
Sbjct: 120 RE 121
>gi|156084192|ref|XP_001609579.1| transcription factor S-II protein [Babesia bovis T2Bo]
gi|154796831|gb|EDO06011.1| transcription factor S-II protein, putative [Babesia bovis]
Length = 109
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEI-QPIFTQDAM 61
FCP C ++L + + + S FSC C Y + R +KEI + + +
Sbjct: 4 FCPLCHSVLFFSC-NPPQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSVNEF 62
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ CP+C + +A + +QTRSADEPM+ F++C C+HRW E
Sbjct: 63 EHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCT--ACRHRWKE 109
>gi|313125712|ref|YP_004035982.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448285551|ref|ZP_21476793.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292077|gb|ADQ66537.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445576559|gb|ELY31012.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
M+FC CG+M+ + M C +C +S + + ++ + I T++
Sbjct: 1 MQFCDECGSMMHNQDGQM------VCSSCGATQEQDSDLASEFVSTEAQDDSDVIETEEG 54
Query: 60 AMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+VTC C HG+A Y QT SADEP + F+ C KNC RW
Sbjct: 55 ANFEGKPTATDVTCEDCGHGEAWYTIKQTGSADEPPTRFFKC--KNCGRRW 103
>gi|393234028|gb|EJD41594.1| hypothetical protein AURDEDRAFT_138547 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCP C +L + +++ C +CPY +R +IK K+P
Sbjct: 1 MLFCPNCANLLV--ISAQTGANKWVCNSCPYEFPITKQHTTRTRIKTKEP---------- 48
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFY 97
D M+ + + CP C+H KA ++++Q RSADEPM+IFY
Sbjct: 49 --DVMLG--EESLPCPKCEHNKAFFNQMQIRSADEPMTIFY 85
>gi|329766135|ref|ZP_08257694.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393794803|ref|ZP_10378167.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia BG20]
gi|329137406|gb|EGG41683.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 103
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQ-PIFTQD 59
M+FCP+C E+ S CP C YV E++ + K + ++E Q + T++
Sbjct: 1 MKFCPSC------EVKLKKGDSGLQCPKCDYVEGKETK---QTKTVVEEQESQFNVLTEN 51
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E P ++ C C + +AV+ LQTRSADEP + FY C+ C++ W
Sbjct: 52 EATETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCS--KCRYTW 99
>gi|402218920|gb|EJT98995.1| DNA-directed RNA polymerase polypeptide [Dacryopinax sp. DJM-731
SS1]
Length = 121
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNME-SRVKIKRKQPLSKKEIQPI 55
FCP CGT+L LP D C C Y N+E + V P + +
Sbjct: 7 FCPECGTLLS--LPVEDNLKYVECEQCQYREPASSYENIEVTTVSTLESIPSPLRLKRTT 64
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T+ + T+ CP C H ++ Y E Q RSADE ++ Y C N CKH W +
Sbjct: 65 RTRAHIGGDLDTKAQCPKCGHRESTYKEKQMRSADEGATLIYSCLNPECKHTWRQ 119
>gi|340975908|gb|EGS23023.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 111
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP C ML L M+ +R C CPY +E + I ++ +++E + +F
Sbjct: 5 FCPYCANMLI--LSRMETGGNRLECRTCPYQHPIE--MPIYSRKHFTRREKEDVFGGPGA 60
Query: 62 MEGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CP C +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 61 WDNAQKGRVQCPTADCPGDEAAFFQVQIRSADEPMTTFYKCM--TCGHRWRE 110
>gi|326634546|pdb|3QT1|I Chain I, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 133
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKE----IQ 53
FC C ML P D+ + F C C YV S + + + + E +Q
Sbjct: 24 FRFCRDCNNML---YPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ 80
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I + + P+++ CP C + V+ +LQ RSADEPM+ FY C NC HRW E
Sbjct: 81 DIGSDPTL---PRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCV--NCGHRWKE 132
>gi|383620681|ref|ZP_09947087.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|448698276|ref|ZP_21698915.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|445780895|gb|EMA31765.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
Length = 102
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGLWKCGSCGYT---EPKGDADQYVVTDSQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q R+ADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMKQIRAADESETRFFICS--ECEHKWRE 99
>gi|338713074|ref|XP_003362820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Equus caballus]
Length = 77
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 50 KEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
KE+ + A E T CP C+H +A + +LQTRSADEPM+ FY C + C HRW
Sbjct: 16 KEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRW 75
Query: 109 NE 110
+
Sbjct: 76 RD 77
>gi|332158918|ref|YP_004424197.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
gi|331034381|gb|AEC52193.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
Length = 110
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKK-EIQPIFT 57
++FCP CG+++ +P R F C C Y N E KR + + + + I
Sbjct: 2 VKFCPKCGSIM---VPDKKR-GVFVCRRCGYEEPINPEDAKAYKRTEEVKHRPDEGVIVV 57
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ P +VTCP C + +A Y ELQTR+ DEP +IF+ C K C + W
Sbjct: 58 EQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFFKC--KRCGYVWR 107
>gi|170031519|ref|XP_001843632.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Culex
quinquefasciatus]
gi|167870460|gb|EDS33843.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Culex
quinquefasciatus]
Length = 127
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 16 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 75
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N NC HRW E
Sbjct: 76 SDPTL--PRTEEHACPKCAHREAVFFQAQTRRAEEEMRLYYVCTNPNCCHRWTE 127
>gi|400596632|gb|EJP64403.1| putative DNA-directed RNA polymerase III subunit C11 [Beauveria
bassiana ARSEF 2860]
Length = 110
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L + +R C CP+ + V +R +KE + +F
Sbjct: 4 FCPHCANILSVSRTNQG-TNRLECRTCPFEHTITEPVFSRRN--YERKEKEDVFGGPGAW 60
Query: 63 EGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CPA C +A ++++Q RSADEPM+ FY C C HRW E
Sbjct: 61 DNAQKARVQCPAENCDGLEAAFYQVQIRSADEPMTSFYKCM--ACGHRWRE 109
>gi|322712166|gb|EFZ03739.1| putative DNA-directed RNA polymerase III subunit C11 [Metarhizium
anisopliae ARSEF 23]
Length = 110
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L L + R +R C CP+ + V +R +KE + +F
Sbjct: 4 FCPQCANILTVSLTNQ-RTNRLECRTCPFEHTITEPVFSRR--VFERKEKEDVFGGPGAW 60
Query: 63 EGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q CPA C +A + ++Q RSADEPM+ F+ C C +RW E
Sbjct: 61 DNAQKGRAQCPAEGCDGDEAAFFQVQIRSADEPMTSFFKCM--TCGNRWRE 109
>gi|242038379|ref|XP_002466584.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
gi|241920438|gb|EER93582.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
Length = 115
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQ---PIFTQD 59
FC CGT+L ++ H SCP C + + + + ++ ++I+ T++
Sbjct: 11 FCGVCGTLLTFDSVHSA-----SCPLCGFKRGAKEMEGKQIQYTMTAEDIRRGLKTLTEE 65
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
+++ P+T TC C H +A Y+ LQ RSADE +IFY C
Sbjct: 66 IVVQRPKTNKTCKFCDHPEAEYYSLQMRSADEGETIFYTCT 106
>gi|145255368|ref|XP_001398943.1| DNA-directed RNA polymerase III subunit RPC10 [Aspergillus niger
CBS 513.88]
gi|134084534|emb|CAK43287.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ K P+ +KE++ +
Sbjct: 3 LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQ--SWFEKTPMKQKEVEDV 60
Query: 56 FTQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
F + T CPA C +A + +LQ RSADEPM+ F C C RW E
Sbjct: 61 FGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGARWRE 116
>gi|15790670|ref|NP_280494.1| hypothetical protein VNG1743C [Halobacterium sp. NRC-1]
gi|10581201|gb|AAG19974.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 219
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + E ++ ++DA
Sbjct: 116 MQFCDECGSMMHKQDGEM------VCASCGASADSEGSEGFVETASQDTSDVIET-SEDA 168
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG P E TCP C HG+A Y QT SADEP + F+ C ++C +RW +
Sbjct: 169 ASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKC--QDCGNRWRD 217
>gi|156937645|ref|YP_001435441.1| DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis
KIN4/I]
gi|156566629|gb|ABU82034.1| DNA-directed RNA polymerase, subunit M [Ignicoccus hospitalis
KIN4/I]
Length = 113
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
M FCP CG+++ + + C C Y V +S ++ +K S KE +
Sbjct: 1 MRFCPKCGSLMVAR--RVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVID 58
Query: 58 QDAMMEG-PQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +E P+T +V CP C H +A Y +QTR+ DEP + FY C C H W E
Sbjct: 59 NNIKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCT--RCGHVWRE 111
>gi|414872417|tpg|DAA50974.1| TPA: hypothetical protein ZEAMMB73_892272 [Zea mays]
Length = 115
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---TQD 59
FC CGT+L + D SCP C + + + + + ++ ++I+ T+D
Sbjct: 11 FCGICGTLLTF-----DSVRSASCPLCGFKRDAKEIEGKEIQYTMTAEDIRRGLKTQTED 65
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107
+ + P T CP C H KA ++ +Q RSADE + FYMC C +
Sbjct: 66 VVGQRPVTNKACPKCDHPKAEFYNIQMRSADEGETTFYMCKGCGCNFK 113
>gi|387593244|gb|EIJ88268.1| hypothetical protein NEQG_01712 [Nematocida parisii ERTm3]
gi|387596044|gb|EIJ93666.1| hypothetical protein NEPG_01238 [Nematocida parisii ERTm1]
Length = 102
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FC C L E ++ S F C C Y + + K K + I+ +
Sbjct: 1 MPFCNKCMNRLSVET--VNSRSTFLCEECNYRKEIPGTFRTKTKLTPKVELIE----KSK 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E P+ CP C KA Y+++QTRSADEPM+IF C CKH W E
Sbjct: 55 PKELPERNALCPECSFTKANYYQMQTRSADEPMTIFNTCT--RCKHTWRE 102
>gi|433592430|ref|YP_007281926.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|448333776|ref|ZP_21522965.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
gi|433307210|gb|AGB33022.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|445621655|gb|ELY75126.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
Length = 102
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + + +E+ I
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT---EPKGDADQYVITDDQEVGEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|269864605|ref|XP_002651632.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
gi|269865006|ref|XP_002651772.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|269865352|ref|XP_002651894.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|269865514|ref|XP_002651950.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|269865596|ref|XP_002651979.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|269865710|ref|XP_002652019.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|269866373|ref|XP_002652251.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|269866849|ref|XP_002652411.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062559|gb|EED41644.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062875|gb|EED41804.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|220063308|gb|EED42038.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|220063381|gb|EED42077.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|220063434|gb|EED42106.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|220063681|gb|EED42162.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|220063904|gb|EED42283.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|220064167|gb|EED42425.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
Length = 89
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 26 CPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
CP C Y N S K++ + ++ K IF + + G + CP C HG+A++ E+Q
Sbjct: 8 CPNCKYE-NKYSETKLESEVFVTTK-TDEIFEKPSGELGNFEAIDCPRCGHGRALFKEVQ 65
Query: 86 TRSADEPMSIFYMCANKNCKHRWNE 110
TRSADE ++FY C C+H W +
Sbjct: 66 TRSADEATTVFYQCV--LCEHNWRQ 88
>gi|448384480|ref|ZP_21563318.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
gi|445658546|gb|ELZ11364.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
Length = 102
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + + +E+ I
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT---EPKGDADQYIVTDDQEVGEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|48477966|ref|YP_023672.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
gi|48430614|gb|AAT43479.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
Length = 101
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP CG+++ ++ C +C Y + + K S KEI I ++
Sbjct: 2 FCPKCGSLMT------PSNGKYICRSCGYEMSKGAEKSTKIVNKSSDKEIIMI-EKEVNA 54
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E +E CP C H A Y QTRSADEP + FY CA C +RW E
Sbjct: 55 EPLDSEAVCPKCHHVGAYYLLKQTRSADEPETKFYTCA--ACGYRWRE 100
>gi|17566332|ref|NP_505062.1| Protein RPB-9 [Caenorhabditis elegans]
gi|351063138|emb|CCD71182.1| Protein RPB-9 [Caenorhabditis elegans]
Length = 167
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPY---VCNMESRVKIKRKQPLSKKEIQP 54
++FCP C ML P D+ SR +SC C + N V + +I
Sbjct: 56 IKFCPECNNML---YPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVG 112
Query: 55 IFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C KAV+ + QT+ A+E M ++Y+CA+++C+HRW E
Sbjct: 113 DIIHDPTL--PKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 167
>gi|320589471|gb|EFX01932.1| RNA polymerase 3 c11 subunit [Grosmannia clavigera kw1407]
Length = 118
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L +R C CPY + + + +R +KE + +F +
Sbjct: 11 FCPCCANVLTVSAHPDTGRNRLECRTCPYEYAITTPLFSRRD--FVRKEKEDVFGGEGAW 68
Query: 63 EGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q T+V CP C +A + ++Q RSADEPM+ F+ C C H W E
Sbjct: 69 DNAQKTKVQCPTDRCDGDEAAFFQVQIRSADEPMTSFFKCM--TCGHGWRE 117
>gi|148643414|ref|YP_001273927.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222445656|ref|ZP_03608171.1| hypothetical protein METSMIALI_01297 [Methanobrevibacter smithii
DSM 2375]
gi|261349796|ref|ZP_05975213.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|148552431|gb|ABQ87559.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222435221|gb|EEE42386.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
gi|288860580|gb|EFC92878.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCP CG+ML LP D + SC + +S + K + I+ +
Sbjct: 1 MEFCPECGSML---LPTEDNELKCSCGYTKKLSKDKSEYNVNEKIKENDSVIEKGEDVNT 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T+ CP C H +A + QTRSADE + F+ C C H W E
Sbjct: 58 L---PTTKAVCPECGHTEASWWLQQTRSADEAETRFFKCL--KCGHTWRE 102
>gi|152031672|sp|O27369.2|RPOM_METTH RecName: Full=DNA-directed RNA polymerase subunit M
Length = 104
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRK--QPLSKKEIQPIFTQ 58
MEFCP CG ++ P +F C C Y ++ ++K K + + + KE IFT
Sbjct: 1 MEFCPKCGAVM---FPS---EGKFKC-QCGYEKDITDKLKDKYRVSEEVEAKET-IIFTG 52
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T V CP C + +A + QTR ADE + F+ C CKH W E
Sbjct: 53 DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCT--RCKHTWRE 102
>gi|15679314|ref|NP_276431.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622419|gb|AAB85792.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 136
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRK--QPLSKKEIQPIFTQ 58
MEFCP CG ++ P +F C C Y ++ ++K K + + + KE IFT
Sbjct: 33 MEFCPKCGAVM---FPS---EGKFKC-QCGYEKDITDKLKDKYRVSEEVEAKET-IIFTG 84
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T V CP C + +A + QTR ADE + F+ C CKH W E
Sbjct: 85 DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCT--RCKHTWRE 134
>gi|313126593|ref|YP_004036863.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448286744|ref|ZP_21477969.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292958|gb|ADQ67418.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445574121|gb|ELY28630.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKK--EIQPIFTQ 58
MEFC CG+M++ + + C +C + ++ + S++ EI +
Sbjct: 1 MEFCDECGSMMKTD------GGVWVCGSCGFEKARDAAQESHMTSTASREDSEIVDMSDV 54
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D GP T V CP C H +A Y Q RSADE + F+ C C H+W E
Sbjct: 55 DDAEIGPTTTVKCPECGHDRARYEMKQIRSADESETRFFTCV--ECSHKWRE 104
>gi|121702561|ref|XP_001269545.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
gi|119397688|gb|EAW08119.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
Length = 116
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP CG L P D P +RF C CPY +++ + K + +KE++ +
Sbjct: 2 LTFCPNCGNSLTISRGEPTRDYPLGVNRFECRTCPYQHILKN--GRQEKTIMKQKEVEDV 59
Query: 56 FTQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T CPA C +A + +LQ RSADEPM+ F C C RW E
Sbjct: 60 LGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGARWRE 115
>gi|70991076|ref|XP_750387.1| RNA polymerase III subunit C11 [Aspergillus fumigatus Af293]
gi|66848019|gb|EAL88349.1| RNA polymerase III subunit C11, putative [Aspergillus fumigatus
Af293]
gi|159130861|gb|EDP55974.1| RNA polymerase III subunit C11, putative [Aspergillus fumigatus
A1163]
Length = 116
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-----SRFSCPACPYVCNMESRVKIKR--KQPLSKKEIQ 53
+ FCP CG L R +RF C CPY + +K R K + +KE++
Sbjct: 2 LTFCPNCGNSLTISRGEPTREYPLGVNRFECRTCPY----QHLLKHGRQEKTTMKQKEVE 57
Query: 54 PIFTQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+F + T CPA C +A + +LQ RSADEPM+ F C C RW E
Sbjct: 58 DVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGARWRE 115
>gi|449684343|ref|XP_004210603.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Hydra magnipapillata]
Length = 74
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 39 VKIKRKQPLSKKEIQPIFT-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFY 97
V I K+ KE+ + +DA TE CP C+ KA + ++QTRSADEPM+ FY
Sbjct: 4 VPISDKRYTKLKEVDDVLGGEDAWKNVDSTEEKCPKCEFKKAYFMQIQTRSADEPMTTFY 63
Query: 98 MCANKNCKHRWNE 110
C +C HRW E
Sbjct: 64 KCC--SCGHRWKE 74
>gi|15669335|ref|NP_248140.1| transcription-associated protein TFIIS [Methanocaldococcus
jannaschii DSM 2661]
gi|3024570|sp|Q58548.1|RPOM_METJA RecName: Full=DNA-directed RNA polymerase subunit M
gi|1591780|gb|AAB99148.1| transcription-associated protein ('TFIIS') [Methanocaldococcus
jannaschii DSM 2661]
Length = 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPL-SKKEIQPIFT 57
++FCP C ++ LP + + C C Y E + + K+ L +KKE +
Sbjct: 2 VKFCPKCNNLM---LP---KDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T + CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>gi|449066209|ref|YP_007433291.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449068485|ref|YP_007435566.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
gi|73920769|sp|Q07271.2|RPOM_SULAC RecName: Full=DNA-directed RNA polymerase subunit M
gi|449034717|gb|AGE70143.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449036993|gb|AGE72418.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
Length = 111
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-SRFSCPACPYV-CNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP CG+M+ +P + + + C C Y+ + KI S KE +
Sbjct: 1 MKFCPKCGSMM---MPRKENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLES 57
Query: 59 DAMMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D G Q ++CP+C + +A + LQTRSADEP + FY C C W E
Sbjct: 58 DMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCT--KCGKVWRE 109
>gi|448344707|ref|ZP_21533611.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
gi|445637348|gb|ELY90499.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
Length = 102
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAE------DGLWECSSCGYT---EPKGDADQYIVTDDQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|448338833|ref|ZP_21527868.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
gi|445621308|gb|ELY74784.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
Length = 102
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAE------DGLWECGSCGYT---EPKGDADQYIVTDDQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|58389474|ref|XP_317057.2| AGAP008393-PA [Anopheles gambiae str. PEST]
gi|55237295|gb|EAA12329.2| AGAP008393-PA [Anopheles gambiae str. PEST]
Length = 128
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 17 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N +C HRW E
Sbjct: 77 SDPTL--PRTEEHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNSSCCHRWTE 128
>gi|448342922|ref|ZP_21531865.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
gi|445624312|gb|ELY77697.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
Length = 102
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAE------DGLWKCGSCGYT---EPKGDADQYIVTDDQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|12580928|emb|CAC27153.1| RNA polymerase III smallest subunit [Platichthys flesus]
Length = 87
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVY 81
RF+C CPYV ++ +V ++ L KE+ + E T TCP C H +A +
Sbjct: 13 RFACNTCPYVHSITRKVNYRKFPKL--KEVDDVLGGAKAWENVDSTPETCPTCGHLRAYF 70
Query: 82 HELQTRSADEPMSIFY 97
++QTRSADEPM+ FY
Sbjct: 71 MQIQTRSADEPMTTFY 86
>gi|224108675|ref|XP_002314931.1| predicted protein [Populus trichocarpa]
gi|222863971|gb|EEF01102.1| predicted protein [Populus trichocarpa]
Length = 113
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIFT 57
+FCP C +L + M + ++C +C + N R +I + +Q + +
Sbjct: 5 KFCPQCNNILYPKEDKMQKILLYACRSCDHQEVAGNNRVYRNEIYHHAAEYTQVLQDVAS 64
Query: 58 QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A+ P+T+ V C C +G+AV+ LQ + DE M++FY+C N NC HRW +
Sbjct: 65 DPAL---PRTKSVCCAVCGYGEAVF--LQATAGDEGMTMFYVCCNPNCGHRWRD 113
>gi|448327639|ref|ZP_21516961.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
gi|445617268|gb|ELY70866.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C Y E + + +EI +
Sbjct: 1 MEFCDECGSMMKAE------DGIWECGSCGYT---EPKGDADQYVITDDQEIGEVIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q R+ADE + F++C C+H+W E
Sbjct: 52 ETSLPETDARCPECGNDRAHWYMQQIRAADESETRFFICT--ECEHKWRE 99
>gi|385804662|ref|YP_005841062.1| DNA-directed RNA polymerase subunit M3 [Haloquadratum walsbyi C23]
gi|339730154|emb|CCC41473.1| transcription elongation factor TFS [Haloquadratum walsbyi C23]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK--IKRKQPLSKKEIQPIFTQ 58
M+FC CG+M++ M C +C Y E V+ I + + I+ ++
Sbjct: 1 MQFCDECGSMMKKVDGVM------VCSSCGYEAEQEGGVEEFISTTEQTGDELIET--SE 52
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA EG T +VTC C +GKA Y QT SADEP + F+ C C +RW E
Sbjct: 53 DANFEGKPTAKDVTCDDCGNGKAWYTIKQTGSADEPPTRFFKCT--ECGNRWRE 104
>gi|14324969|dbj|BAB59895.1| transcription factor [TFIIS/RPB9] [Thermoplasma volcanium GSS1]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-VCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP CG+++ R+ CP+C Y V + +KI K S + + ++
Sbjct: 8 FCPKCGSLM------TPVNGRYVCPSCGYEVSKKKEDLKIVNK---SNDKETIMIREEVS 58
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E ++ CP C H A Y QTRSADEP + FY C + C +RW E
Sbjct: 59 AEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 105
>gi|346325447|gb|EGX95044.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Cordyceps
militaris CM01]
Length = 110
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L + +R C CP+ + V +R +KE + +F
Sbjct: 2 LLFCPHCANILTVSRTNQG-TNRLECRTCPFEHTITEPVFSRR--VYERKEKEDVFGGPG 58
Query: 61 MMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CP AC +A ++++Q RSADEPM+ FY C C HRW E
Sbjct: 59 AWDNAQKARVQCPTEACDGHEAAFYQVQIRSADEPMTSFYKCM--VCGHRWRE 109
>gi|289596628|ref|YP_003483324.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
gi|289534415|gb|ADD08762.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
Length = 103
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP CG+++ + ++ C +C Y ++ + +KE+ I +++ +
Sbjct: 2 FCPKCGSLMH------PKDGKWVCSSCGYEMPIDKDKSQEIVAEAKEKEMIVISSEEELK 55
Query: 63 EGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P E V CP C H A + QTR+ADEP + FY+C C HRW E
Sbjct: 56 ALPYDESVICPKCGHAGAHWMLQQTRAADEPETRFYICP--KCGHRWRE 102
>gi|13541573|ref|NP_111261.1| DNA-directed RNA polymerase subunit M [Thermoplasma volcanium GSS1]
Length = 100
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-VCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP CG+++ R+ CP+C Y V + +KI K S + + ++
Sbjct: 2 FCPKCGSLM------TPVNGRYVCPSCGYEVSKKKEDLKIVNK---SNDKETIMIREEVS 52
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E ++ CP C H A Y QTRSADEP + FY C + C +RW E
Sbjct: 53 AEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 99
>gi|296825916|ref|XP_002850889.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma otae CBS
113480]
gi|238838443|gb|EEQ28105.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma otae CBS
113480]
Length = 117
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQY-ELPHMDR----PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L + P R +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISKAPPTSRYPAGVNRFECRTCPYQYALD-RTYYERTE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C+ +A +++LQ RSADEPM+ FY C+ C RW E
Sbjct: 61 MGGKDEWKNADSMPAQCPAEGCEGDRAFFYQLQIRSADEPMTTFYKCS--VCGTRWRE 116
>gi|91084187|ref|XP_967086.1| PREDICTED: similar to GA17176-PA [Tribolium castaneum]
gi|270008778|gb|EFA05226.1| hypothetical protein TcasGA2_TC015369 [Tribolium castaneum]
Length = 130
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y + +S+ K E I P
Sbjct: 19 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQHADSKCIYVNKIMHEIDELTHIVPDVI 78
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N C HRW E
Sbjct: 79 SDPTL--PRTEDHHCPECNHREAVFFQAQTRRAEEEMRLYYVCTNPMCAHRWTE 130
>gi|158291066|ref|XP_312581.4| AGAP002375-PA [Anopheles gambiae str. PEST]
gi|157018196|gb|EAA07851.5| AGAP002375-PA [Anopheles gambiae str. PEST]
Length = 114
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC------PYVCNMESRVKIKRKQPLSKKEIQPIF 56
FCP CG++L P + +R SC C ME+ I +KK Q
Sbjct: 5 FCPDCGSIL----PPLKNSNRVSCYGCQSEFDAAAFGTMETEYTIHFNSYANKKSDQADR 60
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ EGP CP C + + Y LQ RSADE ++F+ C CK++ +E
Sbjct: 61 AEGEEAEGPIVNRQCPKCGNDQMSYATLQLRSADEGQTVFFTCT--KCKYKMSE 112
>gi|289192260|ref|YP_003458201.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
gi|288938710|gb|ADC69465.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
Length = 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPL-SKKEIQPIFT 57
++FCP C ++ LP + + C C Y E + + K+ L +KKE +
Sbjct: 2 VKFCPKCNNLM---LP---KDGKLRCVVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T + CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>gi|304315435|ref|YP_003850582.1| DNA-directed RNA polymerase, subunit M [Methanothermobacter
marburgensis str. Marburg]
gi|302588894|gb|ADL59269.1| predicted DNA-directed RNA polymerase, subunit M
[Methanothermobacter marburgensis str. Marburg]
Length = 104
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIK---RKQPLSKKEIQPIFT 57
MEFCP CG ++ P +FSC C Y ++ ++K K ++ SK + IFT
Sbjct: 1 MEFCPKCGAVM---FPA---KGKFSC-QCGYEKDITDKLKDKYNFSEEVESKDNV--IFT 51
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T V CP C + +A + QTR ADE + F+ C CK+ W E
Sbjct: 52 GDDVSTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCT--RCKYTWRE 102
>gi|257387411|ref|YP_003177184.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
gi|257169718|gb|ACV47477.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
M+FC CG+M+ + M C +C ++ + ++ + I T++
Sbjct: 1 MQFCDDCGSMMHTDGDEM------VCKSCGSRVQKDADRAAEFVSTAAQSDDDVIETEEG 54
Query: 60 AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A EG T +VTC C HGKA Y QT SADEP + F+ C ++C +RW E
Sbjct: 55 ANFEGKPTAEDVTCADCGHGKAWYTIKQTGSADEPPTRFFKC--QDCGNRWRE 105
>gi|61806687|ref|NP_001013572.1| DNA-directed RNA polymerase I subunit RPA12 [Danio rerio]
gi|60649694|gb|AAH90545.1| Zgc:110825 [Danio rerio]
Length = 118
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRK---QPLSKKEIQP 54
++FCP CG +L P R + +CP C + V + S+V IK PL + +
Sbjct: 8 VDFCPECGNIL----PLPSRLNTITCPRCSFKISVQDFTSQV-IKSSVMFNPLDQSNVAV 62
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+DA ++GP + C C VYH Q RSADE ++F+ C
Sbjct: 63 GSAEDAELKGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTC 107
>gi|150399491|ref|YP_001323258.1| transcription termination factor Tfs [Methanococcus vannielii SB]
gi|150012194|gb|ABR54646.1| transcription termination factor Tfs [Methanococcus vannielii SB]
Length = 105
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
+EFCP C ++ LP + + C C + + + ++K K K+E+ I
Sbjct: 2 VEFCPKCNNIM---LP---KNGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIEN 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D M P T + CP+C + +A + QTR ADEP + FY C K C H W E
Sbjct: 56 IDTM---PITRIECPSCGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|409083004|gb|EKM83361.1| hypothetical protein AGABI1DRAFT_110030 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 125
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLS-------KK 50
+ FCP CGT+L D C C + + ++ V R P + K+
Sbjct: 10 LLFCPECGTLLSRP---KDSADSIICEQCRHEEPASSYDNIVITTRSHPDAFPSALRQKR 66
Query: 51 EIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ Q F D +G CPAC H +A E+Q RSADE +IFY CA +CKH W
Sbjct: 67 KTQTKF-HDKGDQGTLVSEKCPACGHMEAYSKEMQLRSADEGSTIFYTCA--SCKHGW 121
>gi|195113839|ref|XP_002001475.1| GI10814 [Drosophila mojavensis]
gi|193918069|gb|EDW16936.1| GI10814 [Drosophila mojavensis]
Length = 103
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 65 PQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 57 PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 103
>gi|332025400|gb|EGI65567.1| DNA-directed RNA polymerase II subunit RPB9 [Acromyrmex echinatior]
Length = 130
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C + +S K E+ I D
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVA-DV 77
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 78 ISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRWTE 130
>gi|383849643|ref|XP_003700454.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Megachile rotundata]
gi|307211986|gb|EFN87892.1| DNA-directed RNA polymerase II subunit RPB9 [Harpegnathos saltator]
Length = 130
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C + +S K E+ I D
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVA-DV 77
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 78 ISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRWTE 130
>gi|307352937|ref|YP_003893988.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
gi|307156170|gb|ADN35550.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
Length = 104
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +++ + C C + +E R K+ + + + +K+I + +
Sbjct: 1 MMFCPECKGLMK------SSNGKLKCTKCGFEKEIEDRSKMMKVRTMEEKDIVIVEDTEE 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T V CP C H A + Q RSADE F+ C CK+ W E
Sbjct: 55 IATLPTTNVRCPECGHDTAYWWLRQLRSADESEVRFFKCV--KCKYTWRE 102
>gi|126632631|emb|CAM56335.1| novel protein [Danio rerio]
Length = 118
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRK---QPLSKKEIQP 54
++FCP CG +L P R + +CP C + V + S+V IK PL + +
Sbjct: 8 VDFCPECGNIL----PLPSRLNTITCPRCSFKISVQDFTSQV-IKSSVMFNPLDQSNVAV 62
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+DA ++GP + C C VYH Q RSADE ++F+ C
Sbjct: 63 ESAEDAELKGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTC 107
>gi|391337967|ref|XP_003743335.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Metaseiulus occidentalis]
Length = 126
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + +R F+C C + ++ K E+ I + D
Sbjct: 15 IKFCQECNNMLYPKEDKENRQLLFACRNCDFQQVADNHCIYVNKITHEVDELTQIVS-DV 73
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H ++V+ + Q+R A++ M ++Y+C N+ C HRW E
Sbjct: 74 IFDPTLPRTEEHPCPKCGHRESVFFQAQSRRAEDEMRLYYVCCNQGCTHRWTE 126
>gi|340722934|ref|XP_003399854.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Bombus
terrestris]
gi|350418780|ref|XP_003491964.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Bombus
impatiens]
Length = 130
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C + +S K E+ I D
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVA-DV 77
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 78 ISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRWTE 130
>gi|255935413|ref|XP_002558733.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583353|emb|CAP91364.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 116
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDR-----PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L +RF C CPY +E K+ + +KE+ +
Sbjct: 2 LVFCPNCSNALTISKAESSTRFPAGVNRFECRVCPYEAPLEK--NYFEKKAMKQKEVDDV 59
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
F ++ CPA C +A + +LQ RSADEPM+ F C +C RW E
Sbjct: 60 FGGKEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKCT--SCGARWRE 115
>gi|448446626|ref|ZP_21590848.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
gi|445683770|gb|ELZ36160.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
Length = 106
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C +C Y E + + EI + DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCDSCGYEIGREDEDDEWTTESQVESEI--VDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G PQT CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 55 EDKGLPQTTAHCPECGNDRAYWYMQQIRSADESETRFFVCT--ECEHKWRE 103
>gi|378755807|gb|EHY65833.1| hypothetical protein NERG_01440 [Nematocida sp. 1 ERTm2]
Length = 102
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FC C L E+ ++ S F C C Y + + + K LS K + Q
Sbjct: 1 MSFCNKCMNRLSVEI--INSRSIFHCEECNYRKEVPGIFRTRTK--LSPK--VELVEQAK 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E P+ CP C A Y+++QTRSADEPM+IF C CKH W E
Sbjct: 55 PNELPERNTLCPECSCETANYYQMQTRSADEPMTIFNTCT--QCKHTWRE 102
>gi|354610480|ref|ZP_09028436.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353195300|gb|EHB60802.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C V E+ ++ ++DA
Sbjct: 1 MQFCDDCGSMMHKQGDEM------VCSSCGAVEESEADGGFVETAAQDTSDVIET-SEDA 53
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG P E TCP C H A Y QT SADEP + F+ C K C RW +
Sbjct: 54 NFEGKPTAEETCPECGHDTAWYTIKQTGSADEPPTRFFKC--KECGARWRD 102
>gi|391342952|ref|XP_003745779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Metaseiulus occidentalis]
Length = 126
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + +R F+C C + ++ K E+ I + D
Sbjct: 15 IKFCQECNNMLYPKEDKDNRQLLFACRNCDFQQVADNHCIYVNKITHEVDELTQIVS-DV 73
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H ++V+ + Q+R A++ M ++Y+C N+ C HRW E
Sbjct: 74 IFDPTLPRTEEHPCPKCGHRESVFFQAQSRRAEDEMRLYYVCCNQGCTHRWTE 126
>gi|13324793|gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
gi|108710721|gb|ABF98516.1| Transcription factor S-II family protein, expressed [Oryza sativa
Japonica Group]
Length = 126
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CGT+L++ D SCP C + + E+R + + + ++ P
Sbjct: 11 FCGVCGTLLKF-----DSVRSASCPLCGFKRKAKDIEGKETRYTVTAEDIRRELKLDPYV 65
Query: 57 T-------QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+D ++E C CK+ + Y+ Q RSADE ++FY CA NC+H +N
Sbjct: 66 ILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCA--NCRHEFN 123
Query: 110 E 110
E
Sbjct: 124 E 124
>gi|448415638|ref|ZP_21578293.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445680339|gb|ELZ32786.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
M+FC CG+M+ +R C +C ++ + ++ + I T++
Sbjct: 1 MQFCEECGSMMH------NRDGEMVCSSCGATQEQDADRAAEFVSTEAQDDSDVIETEEG 54
Query: 60 AMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+VTC C HG+A Y QT +ADEP + F+ C KNC RW
Sbjct: 55 ANFEGKPTATDVTCEECGHGEAWYTIKQTGAADEPPTRFFKC--KNCGRRW 103
>gi|426201946|gb|EKV51869.1| hypothetical protein AGABI2DRAFT_190080 [Agaricus bisporus var.
bisporus H97]
Length = 125
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLS-------KKEI 52
FCP CGT+L D C C + + ++ V R P + K++
Sbjct: 12 FCPECGTLLSRP---KDSEDSIICEQCRHEEPASSYDNIVITTRSHPDAFPSALRQKRKT 68
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q F D +G CPAC H +A E+Q RSADE +IFY CA +CKH W
Sbjct: 69 QTKF-HDKGDQGTLVSEKCPACGHMEAYSKEMQLRSADEGSTIFYTCA--SCKHGW 121
>gi|340345736|ref|ZP_08668868.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520877|gb|EGP94600.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 103
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FCP C E+ S CP C YV E ++ K + ++E Q F A
Sbjct: 1 MKFCPKC------EVKLKKGDSGLQCPKCNYV---EGNETMQTKTVVEEEESQ--FNVLA 49
Query: 61 MMEGPQT----EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
EG +T ++ C C + +AV+ LQTRSADEP + FY C+ C++ W
Sbjct: 50 ENEGTETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCS--KCRYTW 99
>gi|354611910|ref|ZP_09029862.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353191488|gb|EHB56994.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
MEFC CG+M++ + + C +C + ++ I Q +E + +
Sbjct: 1 MEFCDECGSMMKAD------DGLWVCGSCANKQAKDPDASYVITEGQ----EETEIVDVS 50
Query: 59 DAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA +G P+T V CP+C++ KA ++ Q RSADE + F++C C+HRW E
Sbjct: 51 DAQDKGLPKTTVVCPSCENDKAHWYMQQIRSADESETRFFICT--ECEHRWRE 101
>gi|452208385|ref|YP_007488507.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
gi|452084485|emb|CCQ37832.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
Length = 108
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
MEFC CG+M+ + + C +C + + E+ + Q +
Sbjct: 1 MEFCDECGSMMHS------QEGVWVCGSCGFEKARDADSEADMVTTEGQDTDSGPVDMSE 54
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DA + GP T V CP C H +A Y Q R+ADE + F+ C C H+W E
Sbjct: 55 VDDAEI-GPTTTVNCPNCGHDRARYEMKQIRAADESETRFFTCV--ECDHKWRE 105
>gi|443900393|dbj|GAC77719.1| pleiotropic drug resistance proteins [Pseudozyma antarctica T-34]
Length = 478
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC L +L +++SC CPY V M +R+ +KRK E+ +
Sbjct: 82 MLFCPTCANCLIIQLDDQGN-NKWSCHTCPYEFPIVRQMTTRLHLKRK------EVDDVM 134
Query: 57 T-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEP 92
+++ T+ CP C++ KA + +LQ RSADEP
Sbjct: 135 GGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEP 171
>gi|84490311|ref|YP_448543.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
gi|84373630|gb|ABC57900.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
Length = 105
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM--ESRVKIKRKQPLSKKEIQPIFTQ 58
MEFCP CG +L P + +F+C AC Y + ES+ + + + + K++ I T
Sbjct: 1 MEFCPECGKVL---FP---KDGKFTCDACGYEKGVTEESKKQYEVAEKVDKEDT-VIVTD 53
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P +V CP C + A + QTRSADE + F+ C C + W E
Sbjct: 54 GNVKTLPTIKVICPKCGNKLAFWWLQQTRSADESETRFFRCT--ECDYTWRE 103
>gi|396461030|ref|XP_003835127.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
gi|312211677|emb|CBX91762.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
Length = 108
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG-PQTEVTCP--ACKHGK 78
+RF C CPY + R ++ L KKE++ I + +T V CP C++ +
Sbjct: 21 NRFECLTCPYHFVISKRYY--ERKYLKKKEVEDILGGKGAWDNVDRTGVQCPNEKCRNDE 78
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +++LQ RSADEPM+ FY C C W E
Sbjct: 79 AYWYQLQIRSADEPMTAFYKCT--KCAKEWRE 108
>gi|157124261|ref|XP_001660391.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|94468684|gb|ABF18191.1| RNA polymerase II subunit 9 [Aedes aegypti]
gi|108882826|gb|EAT47051.1| AAEL001831-PA [Aedes aegypti]
Length = 128
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 17 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N C HRW E
Sbjct: 77 SDPTL--PRTEEHACPKCTHREAVFFQAQTRRAEEEMRLYYVCTNPGCCHRWTE 128
>gi|433639454|ref|YP_007285214.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|448377052|ref|ZP_21559976.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
gi|433291258|gb|AGB17081.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|445656278|gb|ELZ09116.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
Length = 102
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL--SKKEIQPIFTQ 58
MEFC CG+M++ + + C +C Y S+ K + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGLWVCGSCDY-----SKPKGDTDEYVVTDDQEASEIIES 49
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ QTRSADE + F++C+ C+H+W E
Sbjct: 50 SEETSLPETDALCPECGNDRAYWYLQQTRSADESETRFFICS--ECEHKWRE 99
>gi|399217223|emb|CCF73910.1| unnamed protein product [Babesia microti strain RI]
Length = 112
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRP--SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M FCP C ++L + SRF C C Y + + + P KK++
Sbjct: 1 MLFCPICHSILFLKKSESSAAISSRFECSHCGYFYPITKAIVNTSEFPELKKKLTSESQL 60
Query: 59 DAMMEGPQTEV--TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+E ++ CP C + +A ++ +Q RSADEP + FY C CK RW E
Sbjct: 61 SENLENLAAKIMAICPTCNNNEAYFYSIQIRSADEPSTNFYTCT--KCKKRWRE 112
>gi|315055069|ref|XP_003176909.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma gypseum
CBS 118893]
gi|311338755|gb|EFQ97957.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma gypseum
CBS 118893]
Length = 104
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAMMEGPQTEVTCPA--CKHGK 78
+RF C CPY ++ R +RK+ + +KE+ + +D CPA C+ +
Sbjct: 16 NRFECRTCPYQYALD-RTYFERKE-MKRKEVADVLGGKDEWKNAESMPAQCPAEGCEGDR 73
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A + +LQ RSADEPM+ FY C+ C RW E
Sbjct: 74 AFFFQLQIRSADEPMTTFYKCS--ACDARWRE 103
>gi|281203893|gb|EFA78089.1| RNA polymerase I subunit [Polysphondylium pallidum PN500]
Length = 311
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFTQ 58
+FCP C ++LQY P + C C + + I K+ ++ K I+P +
Sbjct: 206 DFCPECNSLLQYLEPF---GKQIKCTTCKFRADK----SILGKKIITSKSTLFIKPQKVE 258
Query: 59 DAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
D + G + + CP+C H K + QTRSADE +IFY C + C H+++
Sbjct: 259 DEEEDRGAEIDELCPSCGHTKMYFKTAQTRSADEGQTIFYEC--QKCSHKFS 308
>gi|448360157|ref|ZP_21548799.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
gi|445640107|gb|ELY93197.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
Length = 102
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y + + +E +
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT---KPKGDADEYVVTDSQEATEVIESSD 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q RSADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICS--ECEHKWRE 99
>gi|341876120|gb|EGT32055.1| hypothetical protein CAEBREN_09638 [Caenorhabditis brenneri]
gi|341878156|gb|EGT34091.1| hypothetical protein CAEBREN_10816 [Caenorhabditis brenneri]
Length = 146
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
++FCP C ML P D+ +R +SC C + + K E+ I T
Sbjct: 37 IKFCPECNNML---YPREDKDARVLMYSCRNCEHKEVAANPCIYVNKLVQEIDELTQIVT 93
Query: 58 QDAMMEG--PQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + + P+TE +CP CK KAV+ + QT+ A+E M ++Y+C NCKHRW E
Sbjct: 94 -DIIHDPTLPKTEEHSCPLCKKRKAVFFQAQTKKAEEEMRLYYVCV--NCKHRWTE 146
>gi|289582404|ref|YP_003480870.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448282173|ref|ZP_21473462.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|289531957|gb|ADD06308.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445576807|gb|ELY31255.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
Length = 102
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y + + +E +
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT---KPKGDADEYVVTDSQEATEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q RSADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICS--ECEHKWRE 99
>gi|333910679|ref|YP_004484412.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
gi|333751268|gb|AEF96347.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
Length = 105
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM-------ESRVKIKRKQPLSKKEIQ 53
+EFCP C ++ LP + C C Y + E + KI+ KQP E+
Sbjct: 2 IEFCPKCKNIM---LP---KGGMLKCTVCGYEMELKEENTTYEFKEKIEHKQP----EVT 51
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I D + P T V CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 52 VIEQVDTL---PTTRVECPKCGHMEASWWLQQTRCADEPETRFYKC--KKCGHTWRE 103
>gi|171684021|ref|XP_001906952.1| hypothetical protein [Podospora anserina S mat+]
gi|170941971|emb|CAP67623.1| unnamed protein product [Podospora anserina S mat+]
Length = 111
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-DA 60
FCP C ML L MD +R C CPY +E ++ P K E + +F DA
Sbjct: 5 FCPYCANMLI--LSRMDTGGNRVECRTCPYQHAIEKPYYSRKVFP--KVEKEDLFGGPDA 60
Query: 61 MMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +V C + C G+A + ++Q RSADEPM+ FY C C W E
Sbjct: 61 WANAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRCL--TCGKNWRE 110
>gi|169778755|ref|XP_001823842.1| DNA-directed RNA polymerase III subunit RPC10 [Aspergillus oryzae
RIB40]
gi|238499325|ref|XP_002380897.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|83772581|dbj|BAE62709.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692650|gb|EED48996.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|391870847|gb|EIT80017.1| RNA polymerase III subunit C11 [Aspergillus oryzae 3.042]
Length = 117
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYELP-----HMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L H +RF C CPY +E K + +KE++ +
Sbjct: 3 LTFCPNCSNALTISRADPTPRHPLGVNRFECRTCPYQYVLEQ--SYFEKTEMKQKEVEDV 60
Query: 56 FTQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
F + T CPA C +A + +LQ RSADEPM+ F C +C RW E
Sbjct: 61 FGGKEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKCT--SCGARWRE 116
>gi|407463340|ref|YP_006774657.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046962|gb|AFS81715.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
Length = 104
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FCP C E+ S C C Y E + K + ++ I +
Sbjct: 1 MKFCPKC------EVKLKKGTSGLQCSKCGYTEGQEEKQAKKIIENEQEESILAFEGNEG 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
P ++ C C H +AV+ LQTRSADEP + FY C CK+ W
Sbjct: 55 EESHPTIKIECEKCGHDEAVWWMLQTRSADEPTTQFYRCT--KCKNTW 100
>gi|448424321|ref|ZP_21582371.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|448448783|ref|ZP_21591368.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|448479265|ref|ZP_21604117.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
gi|448506351|ref|ZP_21614461.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|448524804|ref|ZP_21619446.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445682314|gb|ELZ34733.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|445700001|gb|ELZ52019.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|445700170|gb|ELZ52181.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445814257|gb|EMA64224.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|445822543|gb|EMA72307.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
Length = 106
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C AC Y + Q + EI + DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCDACGYEIGRDDGDDEWTTQSQVESEIVDV--SDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P T CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 55 EDKGLPTTTAQCPECDNDRAYWYMQQIRSADESETRFFVCT--ECEHKWRE 103
>gi|261402507|ref|YP_003246731.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
gi|261369500|gb|ACX72249.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
Length = 107
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
++FCP C ++ LP + + C C Y + + + K KKEI +
Sbjct: 2 VKFCPKCKNLM---LP---KDGKLKCAVCGYEEETAEVSNEYEYKEHLEPKKKEIT-VIE 54
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T + CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 55 DEGLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 105
>gi|302920883|ref|XP_003053168.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734108|gb|EEU47455.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 126
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ CP C +L + R +R C CP+ ++ V +R +KE +F
Sbjct: 18 LAVCPHCANILTVSFTNT-RTNRLECRTCPFEHHITEPVFSRRMYERVEKE--DVFGGPG 74
Query: 61 MMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q V CP C +A + ++Q RSADEPM+ FY C C HRW E
Sbjct: 75 AWDNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKCM--TCGHRWRE 125
>gi|448420369|ref|ZP_21581116.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445673520|gb|ELZ26080.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKK--EIQPIFTQ 58
MEFC CG+M++ + + C C + +S + +++ E+ +
Sbjct: 1 MEFCDECGSMMKTD------GGVWVCGNCGFEKARDSAKEDHMTSTAAREDSEVVDMSEV 54
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D GP T V CP C H +A Y Q RSADE + F+ C C H+W E
Sbjct: 55 DDAEIGPTTTVKCPECGHDRARYEMKQIRSADESETRFFTCV--ECGHKWRE 104
>gi|167535081|ref|XP_001749215.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772368|gb|EDQ86021.1| predicted protein [Monosiga brevicollis MX1]
Length = 286
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 46 PLSKKEIQPIFTQD----------AMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMS 94
L KE Q + +D A+ EG T+ + CP CK A Y E+QTRSADEPM+
Sbjct: 213 ALLSKEQQDVLQKDLEKASHDRALAVAEGASTDQLVCPRCKARDASYTEVQTRSADEPMT 272
Query: 95 IFYMCANKNCKHRW 108
IF C K C RW
Sbjct: 273 IFASC--KKCGKRW 284
>gi|443688580|gb|ELT91235.1| hypothetical protein CAPTEDRAFT_195976 [Capitella teleta]
Length = 131
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESR-VKIKRKQPLSKKEIQPIF 56
++FC C ML P D+ SR ++C C Y ++ + + + Q + Q I
Sbjct: 20 IKFCQECNNML---YPKEDKDSRVLLYACRNCEYKQEADNPCIYVNKIQHEVDELTQIIA 76
Query: 57 TQDAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A P+T + CP C H +AV+ + Q+R A+E M ++Y+C+ NC HRW E
Sbjct: 77 DVVADPTLPRTGDHPCPQCGHKEAVFFQSQSRRAEEGMRLYYVCSLANCMHRWTE 131
>gi|242005494|ref|XP_002423600.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
gi|212506748|gb|EEB10862.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
Length = 124
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CG++L P +D + C C + MES +IK + P KE + F
Sbjct: 14 FCWNCGSIL----PMLDDSAVVKCFMCKFEYGPEAFGAMESHYQIKFRSPYGYKETEN-F 68
Query: 57 TQDAMM--EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
Q M EGP E C C + Y LQ RSADE ++FY C
Sbjct: 69 NQRKMQKNEGPVVERKCSKCGNDIMSYATLQLRSADEGQTVFYTCT 114
>gi|225556478|gb|EEH04766.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
gi|240273584|gb|EER37104.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
gi|325087485|gb|EGC40795.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 117
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISRADPSPRYPLGVNRFECRTCPYQYILD-RTYYERTE-MKRKEVSDV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C +A +++LQ RSADEPM+ F+ C C RW E
Sbjct: 61 LGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKCT--TCGARWRE 116
>gi|16082042|ref|NP_394466.1| DNA-directed RNA polymerase subunit M [Thermoplasma acidophilum DSM
1728]
gi|10640321|emb|CAC12135.1| probable transcription-associated protein TFIIS [Thermoplasma
acidophilum]
Length = 100
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-VCNMESRVKIKRKQPLSKKEIQPIFTQDAM 61
FCP CG+++ ++ CP+C Y + + +KI K S + + ++
Sbjct: 2 FCPKCGSLM------TPVNGKYVCPSCGYEISKNKETIKIVSK---SADKETIMIKEEVS 52
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E ++ CP C H A Y QTRSADEP + FY C + C +RW E
Sbjct: 53 AEPLDSDAVCPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 99
>gi|336255048|ref|YP_004598155.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
gi|335339037|gb|AEH38276.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGLWKCGSCGYT---EPKGDADQYIVTDSQEASEIIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAHCPECGNDRAYWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|284164625|ref|YP_003402904.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|448395734|ref|ZP_21568828.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
gi|284014280|gb|ADB60231.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|445660315|gb|ELZ13111.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y E + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGLWKCGSCGYT---EPKGDADEYVVTDSQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAHCPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|340058056|emb|CCC52409.1| putative RNA polymerase III C11 subunit [Trypanosoma vivax Y486]
Length = 126
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESR---------------VKIKRKQ 45
M FCP CGT+L E PH +RFSC +C YV + S+ V +
Sbjct: 1 MFFCPFCGTLLLIE-PHQ-TLNRFSCSSCDYVVPILSQEPLTVNHSFRQYNKVVDDYHVK 58
Query: 46 PLSKKEIQPIFTQDAMMEGPQTEVTC----PACKHGKAVYHELQTRSADEPMSIFYMCAN 101
P E I ++ + G V C C KA+Y ++Q RSADEP + F+ C
Sbjct: 59 PNKDAEGNDIKGEEGVDGGQVITVQCQNDEKQCDSNKALYVQIQMRSADEPATTFFKCL- 117
Query: 102 KNCKHRWNE 110
C +W +
Sbjct: 118 -KCGFQWKQ 125
>gi|448355098|ref|ZP_21543851.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
gi|445635863|gb|ELY89028.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C Y + + +E +
Sbjct: 1 MEFCDECGSMMKAD------NGLWECGSCGYT---KPKGDADEYVVTDSQEATEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q RSADE + F++C+ C+H+W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICS--ECEHKWRE 99
>gi|124028485|ref|YP_001013805.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
gi|123979179|gb|ABM81460.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
Length = 114
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 16/119 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM----ESRVKIKRKQ-PLSKKE---- 51
M+FCP CG+++ L + + + CP+C Y + E+++ + RK+ S+KE
Sbjct: 1 MKFCPRCGSLMT--LRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVV 58
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P AM P+T+ CP C + +A +QTR ADEP + F+ C +C + W E
Sbjct: 59 VDPNVNWKAM---PKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCV--SCGYVWRE 112
>gi|67527952|ref|XP_661823.1| hypothetical protein AN4219.2 [Aspergillus nidulans FGSC A4]
gi|40740128|gb|EAA59318.1| hypothetical protein AN4219.2 [Aspergillus nidulans FGSC A4]
gi|259481174|tpe|CBF74458.1| TPA: RNA polymerase III subunit C11, putative (AFU_orthologue;
AFUA_1G06380) [Aspergillus nidulans FGSC A4]
Length = 108
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY +E K P+ +KE++ +
Sbjct: 3 LTFCPNCSNALTISRADPSPKYPLGINRFECRTCPYQYALEQ--AWFEKTPMKQKEVEAV 60
Query: 56 FTQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIF 96
F A E + T CPA C +A + +LQ RSADEPM+ F
Sbjct: 61 FGGKAEFENADSMATQCPAEGCNGDRAYFFQLQIRSADEPMTTF 104
>gi|448678472|ref|ZP_21689479.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
gi|445772459|gb|EMA23504.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
Length = 107
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + + + + I T++
Sbjct: 1 MQFCDDCGSMMHADGDEM------VCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEG 54
Query: 61 M-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T +VTC C HGKA Y QT SADEP + F+ C ++C HRW E
Sbjct: 55 SNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QDCGHRWRE 105
>gi|256077126|ref|XP_002574859.1| DNA-directed RNA polymerase [Schistosoma mansoni]
gi|108861851|gb|ABG21827.1| RNA polymerase III subunit C11-like protein [Schistosoma mansoni]
gi|353229178|emb|CCD75349.1| putative DNA-directed RNA polymerase [Schistosoma mansoni]
Length = 115
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIK---RKQPLSKKEIQPIFT-Q 58
FCP C ++L E S P C Y + + ++ R+ + E +F+ +
Sbjct: 5 FCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFSVE 64
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D QT+ CP C H +A + ++QTRSADEP +I Y C C H W E
Sbjct: 65 DEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCI--KCHHIWTE 114
>gi|156537281|ref|XP_001605923.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Nasonia vitripennis]
Length = 131
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + ++ ++C C + +S K E+ I D
Sbjct: 20 IKFCQECNNMLYPKEDKENKVLMYACRNCDFKTLADSSCIYVNKIMHEIDELTHIVA-DV 78
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H ++V+ + QTR A+E M ++Y+C N +C HRW E
Sbjct: 79 ISDPTLPRTEEHPCPKCNHRESVFFQAQTRRAEEEMRLYYVCTNAHCTHRWTE 131
>gi|642273|emb|CAA50073.1| transcription associated protein [Sulfolobus acidocaldarius]
Length = 111
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDR-PSRFSCPACPYV-CNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP CG+M+ +P + + + C C Y+ + KI S K +
Sbjct: 1 MKFCPKCGSMM---MPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHSAKAKTLVLAS 57
Query: 59 DAMMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D G Q ++CP+C + +A + LQTRSADEP + FY C C W E
Sbjct: 58 DMPNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCT--KCGKVWRE 109
>gi|357465637|ref|XP_003603103.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|357470681|ref|XP_003605625.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355492151|gb|AES73354.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355506680|gb|AES87822.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
Length = 115
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CGTML +P D CP C CN++ + +S ++I+ D +
Sbjct: 10 FCHLCGTMLT--VPSTDYAL---CPLCKTKCNIKDIKGKEISYTISAEDIRRELGIDLIE 64
Query: 63 EG----PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E + TC C HG+A ++ Q RSADE + FY C C H++ E
Sbjct: 65 EQKVQLSKVNKTCEKCGHGEAAFYTRQMRSADEGQTTFYTCT--RCGHQFQE 114
>gi|256810757|ref|YP_003128126.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
gi|256793957|gb|ACV24626.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
Length = 108
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPL-SKKEIQPIFT 57
++FCP C ++ LP + + C C Y E + + K+ L ++KE +
Sbjct: 2 VKFCPKCKNLM---LP---KDGKLKCVVCGYEEETGSEGSKEYEYKEHLENRKEKITVIE 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T V CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 56 GEGVETLPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>gi|284998325|ref|YP_003420093.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
gi|284446221|gb|ADB87723.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
Length = 111
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPH-MDRPSRFSCPACPYVCNM-ESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP C +M+ +P + + + C C Y + E+ + + K S KE I +
Sbjct: 1 MKFCPKCNSMM---VPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSTKEKTLILEE 57
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ M G Q V CP+CK+ +A + LQTR ADEP + FY C C W E
Sbjct: 58 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 109
>gi|336275367|ref|XP_003352436.1| hypothetical protein SMAC_01269 [Sordaria macrospora k-hell]
gi|38567336|emb|CAE76624.1| probable DNA-directed RNA polymerase III subunit C11 [Neurospora
crassa]
gi|336465301|gb|EGO53541.1| hypothetical protein NEUTE1DRAFT_133901 [Neurospora tetrasperma
FGSC 2508]
gi|350295598|gb|EGZ76575.1| putative DNA-directed RNA polymerase III subunit C11 [Neurospora
tetrasperma FGSC 2509]
gi|380094324|emb|CCC07703.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 112
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L +R C CPY ++ + ++ P +KE + +F
Sbjct: 5 FCPFCANLLILSRADTG-GNRLECRTCPYEHPIDKPIYSRKNFP--RKEKEDVFGGPGAW 61
Query: 63 EGPQ-TEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q +V C + C +A + ++Q RSADEPM+ FY C C HRW +
Sbjct: 62 DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKCM--TCGHRWRD 110
>gi|296109279|ref|YP_003616228.1| transcription termination factor Tfs [methanocaldococcus infernus
ME]
gi|295434093|gb|ADG13264.1| transcription termination factor Tfs [Methanocaldococcus infernus
ME]
Length = 104
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C +L + + CP C Y + + K+ L +KE + +
Sbjct: 2 VKFCPKCNNVL------LPSEGKLKCPVCGYT-EEGEKEGYEYKEKLKRKEEIAVIEGNE 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P ++ CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 55 IETLPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRC--KKCGHTWRE 102
>gi|257053431|ref|YP_003131264.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
gi|256692194|gb|ACV12531.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
Length = 107
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
M+FC CG+M+ + M C +C Y + + + + I T+ D
Sbjct: 1 MQFCEECGSMMHADGEEM------VCQSCGYREAKDQDLADDFVSTQDQTDDDLIETEED 54
Query: 60 AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T +V C C HG A Y QT SADEP + F+ C K C HRW
Sbjct: 55 ANFEGKPTADDVVCDECGHGVAWYTIKQTGSADEPPTRFFKC--KECGHRW 103
>gi|350630739|gb|EHA19111.1| hypothetical protein ASPNIDRAFT_128501 [Aspergillus niger ATCC
1015]
Length = 111
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 4 CPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
CP C L P P +RF C CPY ++ K P+ +KE++ +F
Sbjct: 1 CPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQ--SWFEKTPMKQKEVEDVFGG 58
Query: 59 DAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T CPA C +A + +LQ RSADEPM+ F C C RW E
Sbjct: 59 KEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGARWRE 111
>gi|303317098|ref|XP_003068551.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108232|gb|EER26406.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|320038457|gb|EFW20393.1| RNA polymerase III subunit C11 [Coccidioides posadasii str.
Silveira]
Length = 117
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISRGPPTSQYPLGVNRFECRTCPYQYVLD-RTYFERTE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C +A +++LQ RSADEPM+ F C C RW E
Sbjct: 61 MGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCT--TCGARWRE 116
>gi|46128347|ref|XP_388727.1| hypothetical protein FG08551.1 [Gibberella zeae PH-1]
gi|408394117|gb|EKJ73359.1| hypothetical protein FPSE_06431 [Fusarium pseudograminearum CS3096]
Length = 110
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP C +L L R +R C CP+ ++ V +R + E + +F
Sbjct: 2 LLFCPHCANILTVSLTST-RTNRLECRTCPFEHHITEPVFSRRL--YERVEREDVFGGPG 58
Query: 61 MMEGPQTE-VTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ Q CPA C +A + ++Q RSADEPM+ F+ C +C HRW E
Sbjct: 59 AWDNAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKCM--SCGHRWRE 109
>gi|357118102|ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Brachypodium distachyon]
Length = 125
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CGT+L + D SCP C + + E+R + + + +I+P
Sbjct: 11 FCSVCGTLLDF-----DSVRSASCPLCGFKRKAKAIEGKETRYAVTDEDIRRELKIEPFV 65
Query: 57 T------QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T D +++ + TCP C H + YH Q R+ADE ++FY C C+H +
Sbjct: 66 TLESAPKMDVIVQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFYECP--ECRHNF 121
>gi|448366274|ref|ZP_21554528.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
gi|445654883|gb|ELZ07734.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C C + + + + +E +
Sbjct: 1 MEFCDECGSMMKAE------DGVWECGNCGFT---KPKGNADQYTVTEDQEASEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ TCP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDATCPECGNDRAYWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|48105783|ref|XP_396002.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Apis
mellifera]
gi|380014440|ref|XP_003691240.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Apis
florea]
Length = 130
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C + +S K E+ I D
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVA-DV 77
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 78 ISDPTLPRTEDHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 130
>gi|336364359|gb|EGN92719.1| hypothetical protein SERLA73DRAFT_127310 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378259|gb|EGO19417.1| hypothetical protein SERLADRAFT_374144 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLS-------KKEI 52
FCP CGT+L LP D C C + + E+ R P + K++
Sbjct: 15 FCPDCGTLLS--LP-KDSDQTVICEQCSHEEPASSYENTEITTRSHPEAFPSALRQKRKT 71
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q Q ++ P+ CPAC H +A Y E Q RSADE +I Y C +CKH W
Sbjct: 72 QTKIHQGKVL--PKVSEKCPACGHLEAYYEEKQMRSADEGSTILYTCV--SCKHGW 123
>gi|291221415|ref|XP_002730714.1| PREDICTED: mCG22814-like [Saccoglossus kowalevskii]
Length = 128
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESR-VKIKRKQPLSKKEIQPIFTQD 59
++FC C ML + +R ++C C Y ++ + + + Q + Q +
Sbjct: 17 IKFCQECNNMLYPKEDKENRVLLYACRNCDYQQEADNTCIYVNKIQHEVDELTQIVADVI 76
Query: 60 AMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A P+TE CP C H +AV+ + Q+ ADE M ++Y+C +C HRW E
Sbjct: 77 ADPTLPRTEDHPCPRCGHREAVFFQSQSARADEGMRLYYVCGASSCAHRWTE 128
>gi|119187323|ref|XP_001244268.1| hypothetical protein CIMG_03709 [Coccidioides immitis RS]
gi|392870986|gb|EAS32833.2| RNA polymerase III subunit C11 [Coccidioides immitis RS]
Length = 117
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISKGPPTSQYPLGVNRFECRTCPYQYVLD-RTYFERTE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C +A +++LQ RSADEPM+ F C C RW E
Sbjct: 61 MGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCT--TCGARWRE 116
>gi|340515477|gb|EGR45731.1| predicted protein [Trichoderma reesei QM6a]
Length = 129
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC C ML + R +F+C C Y + +S + S E + TQD
Sbjct: 24 FCSECSNMLYPKEDEELRKLQFTCRTCQYTEDAQSTCVFRNVLNSSSGETAGV-TQDVAS 82
Query: 63 E--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ P++ TCP C H +AV+ + Q RSAD M +FY+C C H ++
Sbjct: 83 DPTLPRSNKTCPKCAHQEAVFFQSQERSADTGMKLFYVCC--ECGHIFD 129
>gi|424512956|emb|CCO66540.1| DNA-directed RNA polymerase III subunit RPC10 [Bathycoccus
prasinos]
Length = 132
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 24/132 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS--------------------RFSCPACPYVCNMESRVK 40
+ FCPTCG +L E C CPY ++
Sbjct: 2 LTFCPTCGNLLSIEKKKKKTEEEAFDVNDEDKEEDKEDELLLHLCCKTCPYSYSIGGTFW 61
Query: 41 IKRKQPL-SKKEIQPIFT-QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYM 98
K P+ +KK + + DA T CP C H A + +QTRSADEPM+ F+
Sbjct: 62 SKTDVPIRNKKRVDDVLGGDDAWKNVDTTRSRCPKCSHDVAYFLMVQTRSADEPMTQFFR 121
Query: 99 CANKNCKHRWNE 110
C C ++W E
Sbjct: 122 CV--ECANQWKE 131
>gi|409051110|gb|EKM60586.1| hypothetical protein PHACADRAFT_179818 [Phanerochaete carnosa
HHB-10118-sp]
Length = 127
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV---CNMESRVKIKRKQP------LSKKEIQ 53
FCP CGT+L LP D + +C C ++ + E+ I R P L +K
Sbjct: 14 FCPDCGTLLN--LPR-DDENEVACEQCGHIEPASSYENITVITRSHPDAFPSALRQKGKT 70
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
D+ CP+C H +A E+Q RSADE +I Y CA CKH W
Sbjct: 71 QTKMHDSEAALLLVTEKCPSCGHMEAYSKEMQLRSADEGSTILYTCA--KCKHGW 123
>gi|242784626|ref|XP_002480425.1| RNA polymerase III subunit C11, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720572|gb|EED19991.1| RNA polymerase III subunit C11, putative [Talaromyces stipitatus
ATCC 10500]
Length = 116
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R+ ++ K L +KE++ +
Sbjct: 3 LTFCPHCSNALTVSRAEPSTTYPMGVNRFQCRTCPYQFVID-RLYVEEKV-LKQKEVEVV 60
Query: 56 FTQDAMME-GPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
F + M + + V CP+ C A +++LQ RSADEPM+ F C C W +
Sbjct: 61 FNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCT--TCAKTWRD 116
>gi|406859226|gb|EKD12295.1| RNA polymerase 3 c11 subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 121
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCP--ACKHGKA 79
+R C CPY +E R +RK + ++ D+ +T++ CP C +A
Sbjct: 33 NRLECQTCPYQYLLERRY-FERKTFVRQERDDVFGGPDSWKNADKTKIQCPKNGCNGDEA 91
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ ++Q RSADEPM+ FY C +C +RW E
Sbjct: 92 AFFQMQIRSADEPMTGFYNCM--SCGNRWRE 120
>gi|401825647|ref|XP_003886918.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998075|gb|AFM97937.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 104
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +ML M + SC C Y+ + +I + P++ K+ + +D
Sbjct: 1 MLFCPLCSSMLVVRRQSMG--NELSCRMCGYLYAISK--EITKSVPMTPKKSDGLIDEDE 56
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ C + + ELQTRSADEPM+IFY C CK W E
Sbjct: 57 NLKFVSKCGKKCECGSEEVSFVELQTRSADEPMTIFYKCI--RCKKVWRE 104
>gi|227828074|ref|YP_002829854.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|227830811|ref|YP_002832591.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|229579707|ref|YP_002838106.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|229585343|ref|YP_002843845.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238620304|ref|YP_002915130.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|385773782|ref|YP_005646349.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
gi|385776417|ref|YP_005648985.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|227457259|gb|ACP35946.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|227459870|gb|ACP38556.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|228010422|gb|ACP46184.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|228020393|gb|ACP55800.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238381374|gb|ACR42462.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|323475165|gb|ADX85771.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|323477897|gb|ADX83135.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
Length = 111
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHM-DRPSRFSCPACPYVCNM-ESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP C +M+ +P + + + C C Y + E+ + + K S KE I +
Sbjct: 1 MKFCPKCNSMM---VPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEE 57
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ M G Q V CP+CK+ +A + LQTR ADEP + FY C C W E
Sbjct: 58 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 109
>gi|448627457|ref|ZP_21671923.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|445758765|gb|EMA10061.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
Length = 107
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPAC-PYVCNMESRV-KIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + M C +C V E R + S E+ I T+
Sbjct: 1 MQFCDDCGSMMHADADEM------VCQSCGARVAKDEDRAAEFVSTDEQSGDEL--IETE 52
Query: 59 DAM-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ EG T +VTC C HGKA Y QT SADEP + F+ C + C HRW E
Sbjct: 53 EGSNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QECGHRWRE 105
>gi|374628584|ref|ZP_09700969.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
gi|373906697|gb|EHQ34801.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
Length = 104
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C ++++ + C C + ++ ++ ++ + ++KEI + ++D
Sbjct: 1 MMFCPECKSLMKAS------GGKLKCTRCGFEKDIANKSQLMKTSTRTEKEITIVDSEDE 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T + CP C + A + Q RSADE F+ C CK W E
Sbjct: 55 IATLPTTAIRCPECGNNTAFWWLRQLRSADESEVRFFKCT--KCKFTWRE 102
>gi|212527774|ref|XP_002144044.1| RNA polymerase III subunit C11, putative [Talaromyces marneffei
ATCC 18224]
gi|210073442|gb|EEA27529.1| RNA polymerase III subunit C11, putative [Talaromyces marneffei
ATCC 18224]
Length = 116
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R+ ++ K L +KE++ +
Sbjct: 3 LTFCPHCSNALTVSRADPSTAYPMGVNRFQCRTCPYQFVID-RLYVEEKV-LKQKEVEVV 60
Query: 56 FTQDAMME-GPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
F + M + + V CP+ C A +++LQ RSADEPM+ F C C W +
Sbjct: 61 FNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCT--TCAKTWRD 116
>gi|307596161|ref|YP_003902478.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
gi|307551362|gb|ADN51427.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
Length = 112
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES-RVKIKRKQPLSKKEIQPIFTQD 59
++FCP C +++ L D + + CP C Y + K+ + ++K++ +PI
Sbjct: 3 IKFCPRCKSVMV--LTKKDGKAVWRCPKCGYEEEAGTGNAKLVERTMVAKRDDKPIVLTK 60
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E P+ TCP C + +A + QTR+ADEP + FY C C + W E
Sbjct: 61 TGEEALPKVRKTCPKCGYEEAYFWVQQTRAADEPPTRFYKCV--RCGYVWRE 110
>gi|255947378|ref|XP_002564456.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591473|emb|CAP97705.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 124
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 34 NMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPM 93
N SR++ K LSK ++ +Q + +GP T++ CP C + KA + E Q RSADE
Sbjct: 44 NFPSRLRTKL---LSKTQV---VSQKDLGDGPITDMECPQCSNSKATWTEAQLRSADEGS 97
Query: 94 SIFYMCANKNCKHRW 108
+IFY C C+HR+
Sbjct: 98 TIFYCCT--KCRHRY 110
>gi|448651475|ref|ZP_21680544.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
gi|445771002|gb|EMA22060.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + + + + I T++
Sbjct: 1 MQFCDDCGSMMHADGDEM------VCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEG 54
Query: 61 M-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T +VTC C HGKA Y QT SADEP + F+ C K C HRW +
Sbjct: 55 SNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--KACGHRWRD 105
>gi|425769916|gb|EKV08395.1| DNA-directed RNA polymerase subunit [Penicillium digitatum Pd1]
gi|425771438|gb|EKV09881.1| DNA-directed RNA polymerase subunit [Penicillium digitatum PHI26]
Length = 116
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRF-------SCPACPYVCNMESRVKIKRKQPLSKKEIQ 53
+ FCP C L + D +RF C CPY ++ K+ + +KE+
Sbjct: 2 LVFCPNCSNALT--ISKADSSTRFPAGVNRFECRVCPYEAPLDK--NYFEKKDMKQKEVD 57
Query: 54 PIFT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+F ++ CPA C +A + +LQ RSADEPM+ F C +C RW E
Sbjct: 58 DVFGGKEEFANADSVGTQCPAESCHGERAYFFQLQIRSADEPMTTFLKCT--SCGARWRE 115
>gi|335433765|ref|ZP_08558581.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898403|gb|EGM36511.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
M+FC CG+M+ + M C +C Y + + + + I T+ D
Sbjct: 1 MQFCDECGSMMHADGEEM------VCQSCGYREPKDQELAEDFVSTQDQTDDDVIETEED 54
Query: 60 AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T +V C C HG A Y QT SADEP + F+ C K C HRW
Sbjct: 55 ANFEGKPTADDVVCDECGHGVAWYTIKQTGSADEPPTRFFKC--KECGHRW 103
>gi|119496511|ref|XP_001265029.1| RNA polymerase III subunit C11, putative [Neosartorya fischeri NRRL
181]
gi|119413191|gb|EAW23132.1| RNA polymerase III subunit C11, putative [Neosartorya fischeri NRRL
181]
Length = 116
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 4 CPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKR--KQPLSKKEIQPIF 56
CP CG L P + P +RF C CPY + +K R K + +KE++ +F
Sbjct: 5 CPNCGNSLTISRGEPTREYPLGVNRFECRTCPY----QHLLKHGRQEKTTMKQKEVEDVF 60
Query: 57 TQDAMMEGPQTEVT-CPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T CPA C +A + +LQ RSADEPM+ F C C RW E
Sbjct: 61 GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCT--TCGARWRE 115
>gi|55377221|ref|YP_135071.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|448640503|ref|ZP_21677406.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|448688895|ref|ZP_21694632.1| DNA-directed RNA-polymerase subunit M [Haloarcula japonica DSM
6131]
gi|55229946|gb|AAV45365.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|445761813|gb|EMA13052.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|445778765|gb|EMA29707.1| DNA-directed RNA-polymerase subunit M [Haloarcula japonica DSM
6131]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + + + + I T++
Sbjct: 1 MQFCDDCGSMMHADGDEM------VCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEG 54
Query: 61 M-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T +VTC C HGKA Y QT SADEP + F+ C + C HRW E
Sbjct: 55 SNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QECGHRWRE 105
>gi|357622101|gb|EHJ73702.1| hypothetical protein KGM_17705 [Danaus plexippus]
Length = 124
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
++FC C ML ++ +++C C Y +S K E I P
Sbjct: 15 IQFCQECNNMLYPREDKNNKVLQYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 74
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + + V CP C H +AV+ + QTR A+E M ++Y+C +CKHRW E
Sbjct: 75 SDPTLPRTKDHV-CPKCNHREAVFFQGQTRRAEEEMRLYYVCT--SCKHRWTE 124
>gi|229581627|ref|YP_002840026.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
gi|228012343|gb|ACP48104.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
Length = 111
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR-FSCPACPYVCNM-ESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP C +M+ +P + C C Y + E+ + + K S KE I +
Sbjct: 1 MKFCPKCNSMM---VPKKSNGKNIYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEE 57
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ M G Q V CP+CK+ +A + LQTR ADEP + FY C C W E
Sbjct: 58 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 109
>gi|322799183|gb|EFZ20613.1| hypothetical protein SINV_03971 [Solenopsis invicta]
Length = 136
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 97 CPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRWTE 136
>gi|161529264|ref|YP_001583090.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
gi|160340565|gb|ABX13652.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FCP C L+ S C C Y E + K + ++E F +
Sbjct: 1 MKFCPKCEVKLK------KGTSGLECSKCGYTEGAEEKQTKKTVETEEQEESILAFEGNE 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E P ++ C C H +A++ LQTRSADEP + FY C C++ W
Sbjct: 55 GEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCT--KCQYTW 101
>gi|384493033|gb|EIE83524.1| hypothetical protein RO3G_08229 [Rhizopus delemar RA 99-880]
Length = 58
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
P+ V+CP C H +AV+ + +R A+ M++FY+CA+K C HRW
Sbjct: 13 PRANVSCPRCGHPEAVFFQSSSRRAEAKMTLFYVCASKGCGHRWT 57
>gi|150402598|ref|YP_001329892.1| transcription termination factor Tfs [Methanococcus maripaludis C7]
gi|159905627|ref|YP_001549289.1| transcription termination factor Tfs [Methanococcus maripaludis C6]
gi|150033628|gb|ABR65741.1| transcription termination factor Tfs [Methanococcus maripaludis C7]
gi|159887120|gb|ABX02057.1| transcription termination factor Tfs [Methanococcus maripaludis C6]
Length = 105
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
+EFCP C ++ LP + C C + + + +K K K+++ I
Sbjct: 2 VEFCPKCNNIM---LP---KAGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIEN 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T + CPAC + +A + QTR ADEP + FY C K C H W E
Sbjct: 56 VDTL---PTTRIECPACGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|343427400|emb|CBQ70927.1| related to transcription elongation factor TFIIS [Sporisorium
reilianum SRZ2]
Length = 319
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 42 KRKQPLSKKEIQPIFTQD--AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
KRK+ + + ++Q +F A E C CK K Y+++QTRSADEPM+ F C
Sbjct: 250 KRKREIEQLQMQNLFKAKGAAAQEAETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTC 309
Query: 100 ANKNCKHRW 108
NC H+W
Sbjct: 310 T--NCNHKW 316
>gi|345004646|ref|YP_004807499.1| transcription termination factor Tfs [halophilic archaeon DL31]
gi|344320272|gb|AEN05126.1| transcription termination factor Tfs [halophilic archaeon DL31]
Length = 105
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV---CNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC CG+M++ E + C C Y + ES + ++ Q S
Sbjct: 1 MKFCDECGSMMKAE------GDEWVC-TCGYTETRGDDESGMTTQQNQEKSDVVDMSDVG 53
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++AM GP TE CP C H +A + Q RSADE + F+ C C ++W E
Sbjct: 54 EEAM--GPTTETRCPECGHDRASFQMQQIRSADESETRFFTCT--ECGYKWRE 102
>gi|448310737|ref|ZP_21500521.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
gi|445607291|gb|ELY61178.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
Length = 102
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + R+ C +C + + + +E I
Sbjct: 1 MEFCDECGSMMKAD------DGRWECGSCGFT---KPKGDADEYIVTDSQEASEIIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q R+ADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAHCPECGNDRAHWYMQQIRAADESETRFFICT--ECEHKWRE 99
>gi|443894971|dbj|GAC72317.1| transcription elongation factor TFIIS [Pseudozyma antarctica T-34]
Length = 321
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 42 KRKQPLSKKEIQPIFTQD--AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
KRK+ + + ++Q +F A E C CK K Y+++QTRSADEPM+ F C
Sbjct: 252 KRKREIEELQMQNLFKAKGAAAQEAETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTC 311
Query: 100 ANKNCKHRW 108
NC H+W
Sbjct: 312 T--NCNHKW 318
>gi|5531801|gb|AAD44475.1|AF076964_4 transcription factor IIS homolog, partial [Giardia intestinalis]
Length = 70
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 41 IKRKQPLSKKEIQPIFTQDAMMEGP-QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
I R L++K + P+ + +G +T+ CP C A + ++Q RS+DEPMS FY C
Sbjct: 1 ISRSLTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRC 60
Query: 100 ANKNCKHRWNE 110
C H+W E
Sbjct: 61 C--QCAHQWRE 69
>gi|118431049|ref|NP_147234.2| transcription factor S [Aeropyrum pernix K1]
gi|116062375|dbj|BAA79403.2| archaeal transcription factor S [Aeropyrum pernix K1]
Length = 118
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRF--SCPACPYV--CNMESRVKIKRKQPLSKK-EIQPI 55
++FCP CG+++ P D +R+ C +C Y + E + + + K + +
Sbjct: 5 IKFCPRCGSIM---YPKRD-GARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDKIV 60
Query: 56 FTQDAMMEGPQT---EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D G Q VTCP C H + + +QTRSADEPM+ FY C K C++ W E
Sbjct: 61 VIDDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRC--KRCRYTWRE 116
>gi|326511037|dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 125
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CGT+L + + SCP C + + E+R + + + +I+P
Sbjct: 11 FCGVCGTLLDF-----NSHRYASCPLCGFKRKAKDIEGKETRYAVTAEDIRRELKIKPFV 65
Query: 57 TQ------DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D +++ TE CP C H + Y+ Q RSADE +IFY C C H +NE
Sbjct: 66 VLESAPNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFYECP--ECGHAFNE 123
>gi|448667264|ref|ZP_21685806.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|445770299|gb|EMA21363.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
Length = 107
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPAC-PYVCNMESRV-KIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + M C +C V E R + S E+ I T+
Sbjct: 1 MQFCDDCGSMMHGDGDEM------VCQSCGARVAKDEDRAAEFVSTDEQSGDEL--IETE 52
Query: 59 DAM-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ EG T +VTC C HGKA Y QT SADEP + F+ C + C HRW E
Sbjct: 53 EGSNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QECGHRWRE 105
>gi|268559674|ref|XP_002637828.1| Hypothetical protein CBG04618 [Caenorhabditis briggsae]
Length = 119
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--------KIKRKQPLSKKEIQ 53
+FC CG +L ELP PS +C C N++ RV KI + I+
Sbjct: 11 DFCGYCGAIL--ELPPQ-APSTVTCKVCSTRWNVKERVDQVVSRVEKIYERTVADTDGIE 67
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ DA+++ C C H KA Y +QTRSADE ++FY C
Sbjct: 68 NDESADAVVDH-----ICTKCGHTKASYSTMQTRSADEGQTVFYTC 108
>gi|134045195|ref|YP_001096681.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
C5]
gi|132662820|gb|ABO34466.1| DNA-directed RNA polymerase, subunit M [Methanococcus maripaludis
C5]
Length = 105
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
+EFCP C ++ LP + C C + + + +K K K+++ I
Sbjct: 2 VEFCPKCNNIM---LP---KGGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIEN 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T + CPAC + +A + QTR ADEP + FY C K C H W E
Sbjct: 56 VDTL---PTTRIECPACGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|344211338|ref|YP_004795658.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|343782693|gb|AEM56670.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
Length = 107
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + M C +C + + + + I T++
Sbjct: 1 MQFCDDCGSMMHADGDEM------VCQSCGARVTKDEDRAAEFVSTDEQSGDELIETEEG 54
Query: 61 M-MEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EG T +VTC C HGKA Y QT SADEP + F+ C + C HRW E
Sbjct: 55 SNFEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKC--QECGHRWRE 105
>gi|284174479|ref|ZP_06388448.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
solfataricus 98/2]
Length = 111
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR-FSCPACPYVCNM-ESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP C +M+ +P + C C Y + E+ + + K S KE + +
Sbjct: 1 MKFCPKCNSMM---VPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEE 57
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ M G Q V CP+CK+ +A + LQTR ADEP + FY C C W E
Sbjct: 58 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 109
>gi|15789670|ref|NP_279494.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|169235384|ref|YP_001688584.1| DNA-directed RNA polymerase subunit M1 [Halobacterium salinarum R1]
gi|10580036|gb|AAG18974.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|167726450|emb|CAP13235.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C + + + ++E + + DA
Sbjct: 1 MEFCDDCGSMMKAD------DELWVCSSCGHKQPKDPSASFVVTE--GQEETEVVDVSDA 52
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G P T V CP C + +A ++ Q RSADE + F++C C+HRW E
Sbjct: 53 QDRGLPTTSVVCPDCDNDEAHWYMQQIRSADESETRFFICT--ECEHRWRE 101
>gi|388854758|emb|CCF51651.1| related to transcription elongation factor TFIIS [Ustilago hordei]
Length = 317
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 42 KRKQPLSKKEIQPIFTQD--AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
KRK+ + + ++Q +F A E C CK K Y+++QTRSADEPM+ F C
Sbjct: 248 KRKREIEELQMQNLFKAKGAAAQEAETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTC 307
Query: 100 ANKNCKHRW 108
NC H+W
Sbjct: 308 T--NCNHKW 314
>gi|71023611|ref|XP_762035.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
gi|46101600|gb|EAK86833.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
Length = 315
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 42 KRKQPLSKKEIQPIFTQD--AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
KRK+ + + ++Q +F A E C CK K Y+++QTRSADEPM+ F C
Sbjct: 246 KRKREIEELQMQNLFKAKGAAAQEAETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTC 305
Query: 100 ANKNCKHRW 108
NC H+W
Sbjct: 306 T--NCNHKW 312
>gi|325967986|ref|YP_004244178.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
gi|323707189|gb|ADY00676.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
Length = 100
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 24 FSCPACPYVCNME-SRVKIKRKQPLSKKEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVY 81
+ CP C Y + S K+ K L++K+ +PI + E P+ + TCP C + +A +
Sbjct: 12 WKCPKCGYEEEVSVSSAKLVEKTTLTRKDDKPIVLTKSGEEALPKVKKTCPKCGYEEAYF 71
Query: 82 HELQTRSADEPMSIFYMCANKNCKHRWNE 110
QTR+ADEP + FY CA C + W E
Sbjct: 72 WVQQTRAADEPPTRFYKCA--RCGYVWRE 98
>gi|76800836|ref|YP_325844.1| DNA-directed RNA polymerase subunit M 1 [Natronomonas pharaonis DSM
2160]
gi|76556701|emb|CAI48273.1| transcription elongation factor TFS [Natronomonas pharaonis DSM
2160]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
MEFC CG+M+ E + C +C + + R+ Q +
Sbjct: 1 MEFCDECGSMMHSE------DGLWVCRSCGFEKQQGDDDADRMTTTEGQDTDSGPVDMSE 54
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D+ + GP T V CP C + +A Y Q R+ADE + F+ C C+H+W E
Sbjct: 55 VDDSEI-GPTTRVNCPECGNDRARYEMKQIRAADESETRFFTCT--ECEHKWRE 105
>gi|302893222|ref|XP_003045492.1| hypothetical protein NECHADRAFT_68831 [Nectria haematococca mpVI
77-13-4]
gi|256726418|gb|EEU39779.1| hypothetical protein NECHADRAFT_68831 [Nectria haematococca mpVI
77-13-4]
Length = 131
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS---RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
FC C ML P D S +F+C C Y + +S + S E + T
Sbjct: 24 FRFCSECSNML---YPKEDVDSHKLQFTCRTCQYTEDAQSTCVFRNVLNTSAGETAGV-T 79
Query: 58 QDAMME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
QD + P++ TCP+CKH +AV+ + Q RSA+ M +FY+C
Sbjct: 80 QDVGSDPTLPRSNKTCPSCKHEEAVFFQSQQRSAETGMKLFYVC 123
>gi|435846111|ref|YP_007308361.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
gi|433672379|gb|AGB36571.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
Length = 102
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C + + + +E +
Sbjct: 1 MEFCDECGSMMKAE------DGTWECGSCGFT---KPKGDAAEYTVTEDQEASEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ TCP C + +A ++ Q R+ADE + F++C +C+++W E
Sbjct: 52 ETSLPETDATCPECGNDRAYWYMQQIRAADESETRFFICT--DCEYKWRE 99
>gi|374636197|ref|ZP_09707776.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
gi|373559770|gb|EHP86054.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
Length = 105
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 22/117 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM-------ESRVKIKRKQPLSKKEIQ 53
+EFCP C ++ LP + C C Y + E + KI+ KQP E+
Sbjct: 2 IEFCPKCKNIM---LP---KGGVLKCTVCGYEMELKEENTTYEFKEKIEHKQP----EVT 51
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I D + P + CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 52 VIEQVDTL---PTIRIECPKCGHMEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 103
>gi|108705696|gb|ABF93491.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
Length = 136
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY-VCNMESRVKIKRKQPLSKKEIQPIF--- 56
M+FC C +L + R F+C C + V + +++ R++ L K++ Q +
Sbjct: 4 MKFCRECNNILYPKEEKDRRLLLFACRNCEHQVHTLIISIRLWRRRNLKKQQQQEVSESK 63
Query: 57 ----TQDAMMEGPQTEVT----------------CPACKHGKAVYHELQTRSADEPMSIF 96
+ A G +T+V C AC HG+AV+ + R +E M++F
Sbjct: 64 CVYRNEVAHAAGERTQVLQDVASDPTLPRTKTVRCAACGHGEAVFFQATAR-GEEGMTLF 122
Query: 97 YMCANKNCKHRWNE 110
++C N C HRW E
Sbjct: 123 FVCCNLTCAHRWRE 136
>gi|115450119|ref|NP_001048660.1| Os03g0102200 [Oryza sativa Japonica Group]
gi|108705695|gb|ABF93490.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|113547131|dbj|BAF10574.1| Os03g0102200 [Oryza sativa Japonica Group]
gi|215767678|dbj|BAG99906.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191907|gb|EEC74334.1| hypothetical protein OsI_09622 [Oryza sativa Indica Group]
gi|222624016|gb|EEE58148.1| hypothetical protein OsJ_09063 [Oryza sativa Japonica Group]
Length = 114
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC C +L + R F+C C + ES+ + + + E + QD
Sbjct: 4 MKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVL-QDV 62
Query: 61 MME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P+T+ V C AC HG+AV+ + R +E M++F++C N C HRW E
Sbjct: 63 ASDPTLPRTKTVRCAACGHGEAVFFQATAR-GEEGMTLFFVCCNLTCAHRWRE 114
>gi|344233023|gb|EGV64896.1| hypothetical protein CANTEDRAFT_104223 [Candida tenuis ATCC 10573]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 3 FCPTCGTMLQYELPHMD----RPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQP 54
FC CG +L +L D R S PA + V + +++ ++
Sbjct: 9 FCTDCGNLLD-KLGAKDTIDCRICSKSYPASKFANLKVVTTSAEDAFPSTLKMNRSSVKT 67
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + EG + CP C H + YH LQ RSADE ++FY C + K R N
Sbjct: 68 TLKNDDLGEGATIKEKCPKCGHDEMQYHTLQLRSADEGATVFYTCTSCGYKFRTNN 123
>gi|448305187|ref|ZP_21495120.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589465|gb|ELY43697.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
Length = 102
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + C +C Y + + +E +
Sbjct: 1 MEFCDECGSMMKA------NDGLWECGSCGYT---KPKGDTSDYTVTDDQEASEVIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDTHCPECGNDRAHWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|254585037|ref|XP_002498086.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
gi|238940980|emb|CAR29153.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
Length = 125
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKI-------------KRKQPL 47
FC CG +L + P + S C C Y + S +K+ K KQ +
Sbjct: 9 FCLDCGDLL--DNPSAVQGSEIECQQCQARYPKSKFSNLKVVTSTADDAFPSSLKMKQSV 66
Query: 48 SKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107
K I +D + EG + CP C H + YH LQ RSADE ++FY C + K+R
Sbjct: 67 VKTSIG----RDDLGEGATIKEKCPKCGHDEMHYHTLQLRSADEGATVFYTCTSCGYKYR 122
Query: 108 WN 109
N
Sbjct: 123 TN 124
>gi|448363717|ref|ZP_21552313.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
gi|445645599|gb|ELY98599.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
Length = 102
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C C + + + + +E +
Sbjct: 1 MEFCDECGSMMKAE------DGVWECGNCGFT---KPKGDADQYTVTEDQEASEVIVSSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAKCPECGNDRAYWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|56756933|gb|AAW26638.1| SJCHGC03725 protein [Schistosoma japonicum]
gi|226487380|emb|CAX74560.1| DNA-directed RNA polymerase III subunit C11 [Schistosoma japonicum]
Length = 115
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIK---RKQPLSKKEIQPIFT-Q 58
FCP C ++L E S P C Y + + ++ R+ + E +F+ +
Sbjct: 5 FCPNCHSLLMIEESAHCYSLNCSAPMCSYRWFVTQPLVLEHKPRQDIRLRLEEDAVFSVE 64
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D Q + CP C H +A + ++QTRSADEP +I Y C C H W E
Sbjct: 65 DEYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCM--KCHHIWTE 114
>gi|11498834|ref|NP_070063.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
gi|3287902|sp|O29033.1|RPOM_ARCFU RecName: Full=DNA-directed RNA polymerase subunit M
gi|2649347|gb|AAB90009.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
Length = 103
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCP C +++ Y+ + C C Y + ++ K +K+++ P+ +
Sbjct: 1 MEFCPKCKSLMIYQ------GDKLVCRKCGYEKEADDSEELVIKVERNKEDV-PVIEGEN 53
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T+ CPAC H +A + Q R+ADE F+ C C W E
Sbjct: 54 LKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCT--KCGKTWRE 101
>gi|407465720|ref|YP_006776602.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
gi|407048908|gb|AFS83660.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
Length = 105
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
M+FCP C E+ + S C C Y E +K +K P E +P F+
Sbjct: 1 MKFCPKC------EVKLKNSGSGLQCSKCGYTEGGE--IKTTKKIPA---EEEPDFSLLA 49
Query: 58 ---QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P ++ C C H +AV QTRSADEP + FY C + CK+ W +
Sbjct: 50 FEGDEGEESNPTVKIDCEKCGHDEAVGWMFQTRSADEPTTRFYRC--QKCKYTWRD 103
>gi|277349595|ref|NP_001162172.1| DNA-directed RNA polymerase I subunit RPA12 [Sus scrofa]
gi|194039982|ref|XP_001929376.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Sus
scrofa]
gi|56805530|dbj|BAD83381.1| ZNRD1 [Sus scrofa]
gi|56805536|dbj|BAD83386.1| transcription-associated zinc ribbon protein [Sus scrofa]
gi|211926938|dbj|BAG82679.1| zinc ribbon domain containing protein 1 [Sus scrofa]
Length = 123
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L P C C + N+ E +V K+ P+S
Sbjct: 14 LDFCPDCGSVL----PLPGTQDAVICTRCGFSINVRDFEGKVVKTSVVFQKVGTAMPMSM 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|407918864|gb|EKG12126.1| hypothetical protein MPH_10756 [Macrophomina phaseolina MS6]
Length = 121
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC-NMESRVKIKRKQPLS--------KKE 51
+ FC CG +L + D + C C C + ++ + +P + + E
Sbjct: 7 LVFCTDCGNLL--DGSSGDSKATLVCEVCGASCKDTAAKTIVTHSKPSAFPSSLRDKRSE 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+Q + T+D M TC C + Y+ Q RSADE ++FY C C H+WN
Sbjct: 65 VQTL-TEDDMQTDATIRQTCEKCGREEVRYYTQQLRSADEGSTVFYTC---ECGHKWN 118
>gi|354543920|emb|CCE40642.1| hypothetical protein CPAR2_106770 [Candida parapsilosis]
Length = 300
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 233 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 290
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 291 ENCGNRW 297
>gi|341878102|gb|EGT34037.1| hypothetical protein CAEBREN_13486 [Caenorhabditis brenneri]
Length = 119
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--------KIKRKQPLSKKEIQ 53
+FC CG +L ELP PS +C C ++ RV KI + I+
Sbjct: 11 DFCGYCGAIL--ELPAQ-APSSVTCKVCATKWAVKERVEQIVSRVEKIYERTVADTDGIE 67
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ DA+++ C C H KA Y +QTRSADE ++FY C
Sbjct: 68 NDESADAVVDH-----ICTKCGHSKASYSTMQTRSADEGQTVFYTC 108
>gi|300710542|ref|YP_003736356.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|448294864|ref|ZP_21484940.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|299124225|gb|ADJ14564.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|445585643|gb|ELY39936.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
Length = 107
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC--NMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP CG+M++ E R+ C +C + E+ + S E+ I T+
Sbjct: 1 MQFCPDCGSMMKAE------DDRWVCGSCGETTARDREAESAFVSTEEQSGDEL--IETE 52
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ A EG T +VTC C +A Y QT SADEP + F+ C K C +RW E
Sbjct: 53 EGAEFEGKPTARDVTCEECGASEAWYTIKQTGSADEPPTRFFKC--KECGYRWRE 105
>gi|448318936|ref|ZP_21508446.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
gi|445597464|gb|ELY51539.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C + + + +E +
Sbjct: 1 MEFCDECGSMMKAE------DGTWECGSCGFT---KPKGDAAEYTVTEDQEASEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C +C+++W E
Sbjct: 52 ETSLPETDANCPECGNDRAYWYMQQIRSADESETRFFICT--DCEYKWRE 99
>gi|448518329|ref|XP_003867941.1| Dst1 protein [Candida orthopsilosis Co 90-125]
gi|380352280|emb|CCG22505.1| Dst1 protein [Candida orthopsilosis]
Length = 300
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 233 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 290
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 291 ENCGNRW 297
>gi|351723413|ref|NP_001236766.1| uncharacterized protein LOC100527489 [Glycine max]
gi|255632466|gb|ACU16583.1| unknown [Glycine max]
Length = 116
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CGTML +P + CP C +C+ E I + + ++ I
Sbjct: 10 FCNLCGTMLT--VPSTEYAQ---CPLCKTRRDIQDICDKEISFTIS-DEDIRRELGMEII 63
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ A+ME + C C HG+A Y+ Q RSADE + FY C C H+ E
Sbjct: 64 EEHAVMEYSKVSKKCEKCGHGEATYYTRQMRSADEGQTTFYTCT--GCGHQSQE 115
>gi|294656076|ref|XP_458316.2| DEHA2C14564p [Debaryomyces hansenii CBS767]
gi|199430838|emb|CAG86394.2| DEHA2C14564p [Debaryomyces hansenii CBS767]
Length = 290
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 223 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 280
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 281 ENCGNRW 287
>gi|242247091|ref|NP_001156084.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|328696851|ref|XP_003240150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Acyrthosiphon pisum]
gi|239788749|dbj|BAH71040.1| ACYPI001520 [Acyrthosiphon pisum]
gi|239789569|dbj|BAH71400.1| ACYPI001520 [Acyrthosiphon pisum]
Length = 130
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + + ++C C + +S K E+ I T
Sbjct: 16 IRFCQECNNMLYPKEDKEHKVLLYACRNCDHRQMADSNCIYVNKIMHEINELTHIVSDVT 75
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P++E CP CKH ++V+ + QTR A+E M ++Y+C N +C HRW E
Sbjct: 76 SDPTL--PRSEDHPCPKCKHRESVFFQAQTRRAEEEMRLYYVCTNPHCIHRWTE 127
>gi|260949205|ref|XP_002618899.1| hypothetical protein CLUG_00058 [Clavispora lusitaniae ATCC 42720]
gi|238846471|gb|EEQ35935.1| hypothetical protein CLUG_00058 [Clavispora lusitaniae ATCC 42720]
Length = 309
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 242 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 299
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 300 ENCGNRW 306
>gi|257075578|ref|ZP_05569939.1| DNA-directed RNA polymerase subunit M [Ferroplasma acidarmanus
fer1]
Length = 101
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG ++ P D+ + C +C K S KEI + ++
Sbjct: 2 FCSKCGALMT---PSRDK---YICNSCGNEIPKAGTADQKIISKSSDKEI-IMVAKEVNA 54
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E ++ CP C H A Y QTRSADEP + FY C ++C HRW E
Sbjct: 55 EPLDSDAVCPVCHHTGAYYLLKQTRSADEPETKFYTC--ESCGHRWRE 100
>gi|406868604|gb|EKD21641.1| putative DNA-directed RNA polymerase I subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 126
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLS------ 48
+ FC C ML M+ S C C V + S+ I QP S
Sbjct: 7 LVFCTDCANMLDSSSGSMN--SVLVCDYCGAHNKAKNVSDTASKTIITSTQPSSFPSLLR 64
Query: 49 --KKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKH 106
+ EIQ I D E +VTC C + Y +Q RSADE +IFY C +C +
Sbjct: 65 QKRSEIQQIERGDLQNEAT-IKVTCTECGRDEVRYTAVQLRSADEGSTIFYRC---DCGN 120
Query: 107 RWN 109
+WN
Sbjct: 121 KWN 123
>gi|367049356|ref|XP_003655057.1| hypothetical protein THITE_2118310 [Thielavia terrestris NRRL 8126]
gi|347002321|gb|AEO68721.1| hypothetical protein THITE_2118310 [Thielavia terrestris NRRL 8126]
Length = 128
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC C ML + +R F+C C + S + + E + TQD
Sbjct: 23 FCSECSNMLYPKEDEAERKLMFTCRTCNFSEEATSMCIFRNAMNNAASETAGV-TQDVSS 81
Query: 63 E--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ P++ TCPACKH +AV+ + Q RSA+ M +FY+C
Sbjct: 82 DPTLPRSNRTCPACKHEEAVFFQSQQRSAETGMKLFYVC 120
>gi|324519873|gb|ADY47501.1| DNA-directed RNA polymerase I subunit RPA12 [Ascaris suum]
Length = 112
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK--IKRKQPLSKKEIQPIFTQD 59
EFC TCGT+L LP P+ +C C +++ + + R + + ++ + T++
Sbjct: 7 EFCSTCGTILP--LPDT-APTTVTCALCHTKWHIKPVINKLVYRTEKIYERRLAE--TKE 61
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+E P E C C H K Y QTRSADE ++FY C NCK+ E
Sbjct: 62 GDVENPIVEKICEKCGHDKMSYACRQTRSADEGQTVFYTCL--NCKYSIVE 110
>gi|156564607|gb|ABU80627.1| transcription elongation factor TFIIS [Artemia franciscana]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 57 TQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q A++EG QT++ C C Y++LQTRSADEPM+ F +C C HRW
Sbjct: 55 SQLAVVEGTQTDLLKCGKCHKRNCTYNQLQTRSADEPMTTFVLC--NECGHRW 105
>gi|448350560|ref|ZP_21539372.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
gi|445636129|gb|ELY89292.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
Length = 102
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C C + + + + +E +
Sbjct: 1 MEFCDECGSMMKAE------DGVWECGNCGFT---KPKGDADQYTVTEDQEASEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAKCPECGNDRAYWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|302348255|ref|YP_003815893.1| DNA-directed RNA polymerase subunit M [Acidilobus saccharovorans
345-15]
gi|302328667|gb|ADL18862.1| putative DNA-directed RNA polymerase subunit M [Acidilobus
saccharovorans 345-15]
Length = 117
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE------IQP 54
M+FCP CGT+++ + ++ F CP C Y + S+ ++ PLS E +
Sbjct: 1 MKFCPRCGTLMRPK--SINGKLVFVCPKCGYEEEVPSKARVA--TPLSFTERVAHTPKER 56
Query: 55 IFTQDAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
I DA P +V CP C + + + +QTR+ADEP + FY C C + W
Sbjct: 57 IIVVDANAPPPTAQVLKGSVRCPRCGNDEVLAWMMQTRAADEPPTRFYRCT--KCGYTWR 114
Query: 110 E 110
E
Sbjct: 115 E 115
>gi|258577433|ref|XP_002542898.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903164|gb|EEP77565.1| predicted protein [Uncinocarpus reesii 1704]
Length = 323
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC CG +L + R + + N SR++ K K + T++A
Sbjct: 200 VQFCEDCGNLLDDIPDELLRYTALNYTQTSTSENFPSRLRNKLKSYTQE------VTREA 253
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107
+ GPQ E+ C C + Y ++Q RSADE +IFY C CKHR
Sbjct: 254 VGSGPQIEMDCVKCPSREVTYAQVQLRSADEGSTIFYTCM--KCKHR 298
>gi|344232834|gb|EGV64707.1| transcription elongation factor [Candida tenuis ATCC 10573]
Length = 286
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 219 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 276
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 277 ENCGNRW 283
>gi|257389226|ref|YP_003178999.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
gi|257171533|gb|ACV49292.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
Length = 107
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C ++ + ++E + + T +
Sbjct: 1 MEFCDDCGSMMKAE------DGVWVCGSCGAERARDAADESSMVTTQGQEESEIVDTSEV 54
Query: 61 MME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E GP T+ CP C + +A + Q R+ADE + F+ C C H+W E
Sbjct: 55 EAEDMGPTTDAHCPECGNDRAFWEMKQIRAADESETRFFTCT--ECDHKWRE 104
>gi|448397335|ref|ZP_21569456.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
gi|445672972|gb|ELZ25540.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C + + + + +E I
Sbjct: 1 MEFCDECGSMMKAD------NGIWECGSCGFT---KPKGDADQYTLTEDQEASEIIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 ETSLPETDAICPECGNDRAYWYMQQIRSADESETRFFICT--ECEHKWRE 99
>gi|17558010|ref|NP_506572.1| Protein RPOA-12 [Caenorhabditis elegans]
gi|3874352|emb|CAB02739.1| Protein RPOA-12 [Caenorhabditis elegans]
Length = 119
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--------KIKRKQPLSKKEIQ 53
+FC CG +L ELP P+ SC C ++ RV KI + I+
Sbjct: 11 DFCGYCGAIL--ELPAQ-APATVSCKVCSTRWAVKERVDQVVSRVEKIYERTVADTDGIE 67
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ DA+++ C C H KA Y +QTRSADE ++FY C
Sbjct: 68 NDESADAVVDH-----ICTKCGHSKASYSTMQTRSADEGQTVFYTC 108
>gi|66816475|ref|XP_642247.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
gi|60470324|gb|EAL68304.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
Length = 324
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFS----CPACPYVCNMESRV--KIKRKQPLSKKEIQPI 55
+FCP C L Y P FS C C + + + KI K L K I+
Sbjct: 217 DFCPQCNAFLNY-------PKNFSQHITCSLCTFSKSKADLLNKKIVTKSSLFNKSIKNK 269
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
+ G + CP C HGK + QTRSADE +IFY C
Sbjct: 270 EEDNEEDRGAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCV 314
>gi|68486327|ref|XP_712962.1| hypothetical protein CaO19.4537 [Candida albicans SC5314]
gi|68486518|ref|XP_712868.1| hypothetical protein CaO19.12012 [Candida albicans SC5314]
gi|46434285|gb|EAK93699.1| hypothetical protein CaO19.12012 [Candida albicans SC5314]
gi|46434386|gb|EAK93797.1| hypothetical protein CaO19.4537 [Candida albicans SC5314]
gi|238879330|gb|EEQ42968.1| hypothetical protein CAWG_01194 [Candida albicans WO-1]
Length = 305
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 238 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 295
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 296 ENCGNRW 302
>gi|391332671|ref|XP_003740755.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Metaseiulus occidentalis]
Length = 127
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE----IQPIF 56
+EFC CG++L P D C C +E+ ++ K + + ++
Sbjct: 18 LEFCSVCGSIL----PLADATKFVVCRLCSTSIPIENFHGMETKSVVVYNDRETALKGAV 73
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D + GP + C C Y LQTRSADE +IFY C +C H+ NE
Sbjct: 74 QKDDGVVGPTVDRVCVKCGREGMTYATLQTRSADEGQTIFYSC--PDCGHQENE 125
>gi|241948245|ref|XP_002416845.1| DNA strand transfer protein alpha, putative; dna strand transferase
1, putative; pyrimidine pathway regulatory protein 2,
putative; transcription elongation factor SII, putative
[Candida dubliniensis CD36]
gi|223640183|emb|CAX44432.1| DNA strand transfer protein alpha, putative [Candida dubliniensis
CD36]
Length = 303
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 236 KKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 293
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 294 ENCGNRW 300
>gi|321470559|gb|EFX81535.1| hypothetical protein DAPPUDRAFT_303407 [Daphnia pulex]
Length = 122
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME--SRVKIKRKQPLSKK----EIQPI 55
+FCP CG +L P + C C + +++ V++ +K+ E Q +
Sbjct: 12 QFCPRCGAIL----PILGTAGGVMCIVCKFEIDIQVMEEVRVDYNIDFNKRSDYIEEQQL 67
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + +GP E C C + Y LQ RSADE +IFY C C+H+ E
Sbjct: 68 KSAQSKTDGPLVERKCSKCGNETMSYASLQLRSADEGQTIFYTCT--KCQHKETE 120
>gi|440889570|gb|ELR44661.1| DNA-directed RNA polymerase I subunit RPA12, partial [Bos grunniens
mutus]
Length = 119
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + SC C + N+ E +V K+ PLS
Sbjct: 17 LDFCPDCGSVL--PLPGVQ--DAVSCTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSM 72
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E P F +GP + C C H YH Q RSADE ++FY C N
Sbjct: 73 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTN 117
>gi|149754819|ref|XP_001490389.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Equus
caballus]
Length = 168
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRV--------KIKRKQPLSK 49
++FCP CG++L P +C C + V + E +V K+ P+S
Sbjct: 59 LDFCPDCGSVL----PLPGAQDTVTCTRCGFSINVLDFEGKVVKTSFVFHKLGTAMPMSM 114
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 115 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 165
Query: 110 E 110
E
Sbjct: 166 E 166
>gi|288559803|ref|YP_003423289.1| transcription factor S Tfs1 [Methanobrevibacter ruminantium M1]
gi|288542513|gb|ADC46397.1| transcription factor S Tfs1 [Methanobrevibacter ruminantium M1]
Length = 105
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY-------VCNMESRVKIKRKQPLSKKEIQ 53
M FCP CG ML M + C AC Y V E + K +RK KE +
Sbjct: 1 MRFCPKCGKML------MPKNDILKC-ACGYEEKISAEVAEREYKFKGERK-----KENK 48
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
I T + + P T++TC C K V+ +QTRSADE + F C C + W
Sbjct: 49 VIVTDNNNIALPTTKITCYKCGGTKGVWWTVQTRSADEAPTYFIRCV--KCGNTW 101
>gi|154150454|ref|YP_001404072.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
gi|153999006|gb|ABS55429.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
Length = 104
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C ++L M + C C Y+ +ES K+ ++ ++ EI + +D +
Sbjct: 2 FCPECKSLL------MSSGGQLKCRKCGYIRKIESNDKMTMERKRTENEITIVDDEDEKV 55
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P ++ CP C++ A + Q R+ADE F+ C C H W +
Sbjct: 56 NTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRCT--ECGHTWRQ 102
>gi|388254857|gb|AFK24971.1| putative transcription termination factor TFIIS [uncultured
archaeon]
Length = 89
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 16/92 (17%)
Query: 25 SCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAM--MEG------PQTEVTCPACKH 76
SCP C + + K +++ K+E + + + ++ MEG P T + CP CK+
Sbjct: 2 SCPKCGF------KAKRGQEEKGKKQEDKKVGSNASLKVMEGESVDALPTTSIECPQCKN 55
Query: 77 GKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
G A + LQTRSADE + FY C C H W
Sbjct: 56 GMAFWWMLQTRSADEATTQFYRCT--KCGHTW 85
>gi|344304668|gb|EGW34900.1| hypothetical protein SPAPADRAFT_131482 [Spathaspora passalidarum
NRRL Y-27907]
Length = 296
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 229 KKEIEKLNKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 286
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 287 ENCGNRW 293
>gi|426250668|ref|XP_004019056.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Ovis aries]
Length = 123
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L P +C C + N+ E +V K+ PLS
Sbjct: 14 LDFCPDCGSVL----PLPGAQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSM 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|114051922|ref|NP_001039865.1| DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
gi|358418403|ref|XP_003583930.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Bos taurus]
gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|92097539|gb|AAI14800.1| Zinc ribbon domain containing 1 [Bos taurus]
gi|296474270|tpg|DAA16385.1| TPA: DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
Length = 123
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + +C C + N+ E +V K+ PLS
Sbjct: 14 LDFCPDCGSVL--PLPGVQ--DAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSM 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|307104138|gb|EFN52393.1| hypothetical protein CHLNCDRAFT_138851 [Chlorella variabilis]
Length = 92
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA-M 61
FCPTCG ML EL R S F M + K+I+P+ +A
Sbjct: 5 FCPTCGNML--ELEEGGRQSEFF---------MSQKT----------KKIEPVLGGEAEW 43
Query: 62 MEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+TE T C C H A Y ++Q RSADEP + ++ C C W E
Sbjct: 44 RSAPRTEHTRCSECGHNVAFYQQVQNRSADEPATTYFRCT--RCAKVWQE 91
>gi|295671180|ref|XP_002796137.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226284270|gb|EEH39836.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 128
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ CP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 14 ISVCPNCSNALTISRAEPTSRYPLGVNRFECRTCPYQYILD-RTYYERTE-MKRKEVADV 71
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D CPA C +A +++LQ RSADEPM+ F C C RW E
Sbjct: 72 LGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCT--TCGARWRE 127
>gi|440638044|gb|ELR07963.1| hypothetical protein GMDG_02822 [Geomyces destructans 20631-21]
Length = 124
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Query: 1 MEFCPTCGTMLQYE-LPHM-----DRPS-------RFSCPACPYVCNMESRVKIKRKQPL 47
+ FCP C +L +P + D P+ R C CPY + R +RK
Sbjct: 2 LLFCPNCCNVLTVSPVPPLAGNSDDDPAAAAVGQNRLECRTCPYQYLLTKRY-FERKT-F 59
Query: 48 SKKEIQPIFTQDAMMEGPQ-TEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNC 104
++ E + +F + Q EV CP C +A + ++Q RSADEPM+ FY C C
Sbjct: 60 TRTEREDVFGGPGAWDDAQKAEVQCPREGCDSNEAAFFQVQIRSADEPMTSFYKCM--TC 117
Query: 105 KHRWNE 110
+RW E
Sbjct: 118 NNRWRE 123
>gi|448473373|ref|ZP_21601515.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
gi|445818885|gb|EMA68734.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
Length = 106
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C +C + E + + EI I DA
Sbjct: 1 MKFCDECGSMMKS----GEGEDHWVCDSCGHEIGREENDAEWTTESQVESEI--IDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P+T CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 55 EDKGLPKTTAHCPECGNDQAYWYMQQIRSADESETRFFVCT--ECEHKWRE 103
>gi|15897234|ref|NP_341839.1| DNA-directed RNA polymerase subunit M [Sulfolobus solfataricus P2]
gi|384433745|ref|YP_005643103.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
gi|13813433|gb|AAK40629.1| DNA-directed RNA polymerase, subunit M (rpoM-1) [Sulfolobus
solfataricus P2]
gi|261601899|gb|ACX91502.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
Length = 114
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR-FSCPACPYVCNM-ESRVKIKRKQPLSKKEIQPIFTQ 58
++FCP C +M+ +P + C C Y + E+ + + K S KE + +
Sbjct: 4 VKFCPKCNSMM---VPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEE 60
Query: 59 DAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ M G Q V CP+CK+ +A + LQTR ADEP + FY C C W E
Sbjct: 61 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCT--KCGKVWRE 112
>gi|149244436|ref|XP_001526761.1| hypothetical protein LELG_01589 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449155|gb|EDK43411.1| hypothetical protein LELG_01589 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 322
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 255 KKEIEKMHKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 312
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 313 ENCGNRW 319
>gi|307183943|gb|EFN70531.1| DNA-directed RNA polymerase II subunit RPB9 [Camponotus floridanus]
Length = 103
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
CP C H +AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 64 CPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 103
>gi|392596927|gb|EIW86249.1| DNA-directed RNA polymerase I kDa polypeptide [Coniophora puteana
RWD-64-598 SS2]
Length = 125
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQP--LSKKEIQPI 55
+ FCP CGT+L + P+ + P C C + + + R P Q
Sbjct: 11 LLFCPNCGTLL--DTPNGNTPV-VVCEQCKHEEPASSFHDIEIVTRSHPDAFPSALRQKR 67
Query: 56 FTQDAMMEG---PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
TQ + EG P+ CPAC++ +A Y E Q RSADE +I Y C +CKH W
Sbjct: 68 KTQTKLHEGKVLPKVAEKCPACEYPEAFYEEKQMRSADEGSTILYTCV--SCKHGW 121
>gi|226288892|gb|EEH44404.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 137
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QDAMMEGPQTEVTCPA--CKHGK 78
+RF C CPY ++ R +R + + +KE+ + +D CPA C +
Sbjct: 49 NRFECRTCPYQYILD-RTYYERTE-MKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDR 106
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A +++LQ RSADEPM+ F C C RW E
Sbjct: 107 AFFYQLQIRSADEPMTTFLKCT--TCGARWRE 136
>gi|118576604|ref|YP_876347.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
gi|118195125|gb|ABK78043.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
Length = 103
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C L+ CP C Y +R K K EI
Sbjct: 1 MRFCPKCEDRLR------KNGDASVCPKCGYT-ESAARGPTKAKPAEGTPEIN------- 46
Query: 61 MMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+++GP E + C C HG+AV+ LQTRSADEP + FY C C H W
Sbjct: 47 VLDGPVDEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCI--KCSHTW 99
>gi|357162059|ref|XP_003579291.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Brachypodium distachyon]
gi|326497375|dbj|BAK02272.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + F+C C + ++ + S E +
Sbjct: 4 MKFCRECNNIL---YPKEDRDQKVLLFACRNCDHQEVADNNCVYRNVVHHSAGEFTQVL- 59
Query: 58 QDAMME--GPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T EV C C HG+AV+ + R +E M++F++C N +C HRW E
Sbjct: 60 QDVAGDPTLPRTKEVRCAVCGHGEAVFFQATAR-GEEGMTLFFVCCNPSCGHRWRE 114
>gi|260836435|ref|XP_002613211.1| hypothetical protein BRAFLDRAFT_278052 [Branchiostoma floridae]
gi|229298596|gb|EEN69220.1| hypothetical protein BRAFLDRAFT_278052 [Branchiostoma floridae]
Length = 125
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
+ FC C ML + ++ ++C C Y ++ K E+ I
Sbjct: 14 IRFCQECNNMLYPKEDKENKILLYACRNCDYQQVADNSCIYVNKIMHEVDELTQIVADVA 73
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + QT A++ M ++Y+C NC HRW E
Sbjct: 74 QDPTL--PRTEDHQCPKCGHREAVFFQSQTTKAEDAMRLYYVCTAPNCGHRWTE 125
>gi|357617341|gb|EHJ70731.1| transcription-associated zinc ribbon protein [Danaus plexippus]
Length = 120
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG++L P + C AC + +S IK + + + + D ++
Sbjct: 13 FCAKCGSIL----PLLQEFGSVKCYACKASYDPDSYSNIKFNYTIHFNTVSAL-SNDKIL 67
Query: 63 -----EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EGP E CP C + + Y LQ RSADE ++FY C +CK++ E
Sbjct: 68 HMDNPEGPVVERKCPKCGNDRMSYATLQLRSADEGQTVFYTCI--SCKYKETE 118
>gi|156372965|ref|XP_001629305.1| predicted protein [Nematostella vectensis]
gi|156216302|gb|EDO37242.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM----ESRVKIKRKQPLSKKEIQPIFT 57
+FCP CG++L LP ++ SC C + + E + K++ + K++
Sbjct: 7 DFCPVCGSILP--LPGLE--DVVSCKLCDFQRDTAEFEEVEIHSKKRFNVDKEKRTTDDR 62
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
++ GP + CP C H Y QTRSADE ++FY+C +
Sbjct: 63 KNDDTSGPMVDRKCPNCGHEGMTYMTRQTRSADEGQTVFYICTD 106
>gi|118791506|ref|XP_319787.3| AGAP009035-PA [Anopheles gambiae str. PEST]
gi|116117634|gb|EAA14772.3| AGAP009035-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C HRW
Sbjct: 263 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGHRW 312
>gi|297619595|ref|YP_003707700.1| transcription termination factor Tfs [Methanococcus voltae A3]
gi|297378572|gb|ADI36727.1| transcription termination factor Tfs [Methanococcus voltae A3]
Length = 105
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKK---EIQPIFT 57
+EFCP C ++ LP + C C + ++E+ K K LS+K + Q +
Sbjct: 2 VEFCPKCNNIM---LP---KEGILKCVVCGFESSLENN---KDKYELSEKIESKSQDVTV 52
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P + CP+C + +A + QTR ADEP + FY C K C H W E
Sbjct: 53 IENVNTLPSIRIECPSCGNMEAYWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|19173009|ref|NP_597560.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19168676|emb|CAD26195.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329727|gb|AGE95997.1| DNA-directed RNA polymerase III 12.5kDa subunit [Encephalitozoon
cuniculi]
Length = 104
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +ML + + + SC C Y+ + +I R ++ K+ + +D
Sbjct: 1 MLFCPLCSSMLVVKKQAIG--NELSCKMCGYLYAISE--EISRTVGMTPKKSEGFVDEDE 56
Query: 61 MME-----GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ G + E C + + ELQTRSADEPM+IFY C CK W E
Sbjct: 57 SLKFVTKCGKRCE-----CGSEEVSFVELQTRSADEPMTIFYKCI--RCKKVWKE 104
>gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174740|gb|ACB07793.1| DNA-directed RNA polymerase, subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA-M 61
FCP CGT+L+ + + + CP+C Y + + ++ + I +++
Sbjct: 2 FCPKCGTLLRPK--KAGKRLIYYCPSCGYESESPPKGNSQVITKVTSESGDVIIEEESEK 59
Query: 62 MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P E CP C + KA + +QTR+ADEP + Y C C + W E
Sbjct: 60 ISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKCT--KCGYSWRE 106
>gi|448083875|ref|XP_004195463.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
gi|359376885|emb|CCE85268.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
Length = 296
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH + Y+++QTRSADEP++ F C
Sbjct: 229 KKEIEKLHKQNLFEAQGATEKRAVTDRFTCGKCKHKRVSYYQMQTRSADEPLTTFCTC-- 286
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 287 ENCGNRW 293
>gi|190345115|gb|EDK36938.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 213
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFTQDAMME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + K Q +F E TC CKH K Y+++QTRSADEP++ F C
Sbjct: 146 KQEIEKLNKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 203
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 204 ENCGNRW 210
>gi|402593543|gb|EJW87470.1| DNA-directed RNA polymerase subunit [Wuchereria bancrofti]
Length = 121
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C ML + +R ++C C + E+ K E+ I D
Sbjct: 10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQLSENPCIYVNKLMHEVDELTQIVA-DV 68
Query: 61 MMEG--PQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C+ +AV+ + Q+R A+E M ++Y+C N +C HRW +
Sbjct: 69 VHDPTLPKTEDHPCPMCRGREAVFFQAQSRRAEEEMRLYYVCMNPSCAHRWTD 121
>gi|380489139|emb|CCF36903.1| transcription factor S-II [Colletotrichum higginsianum]
Length = 110
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +L R +R C CP+ + + +R +KE + +F
Sbjct: 4 FCPNCANILTVSAYAGVR-NRLECRTCPFEHAITEPIYSRRD--FERKEREDVFGGPGEW 60
Query: 63 E-GPQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + CP C +A + ++Q RSADEPM+ FY C C +RW E
Sbjct: 61 DNADKARAQCPKEGCNGEEAAFFQVQIRSADEPMTTFYKCM--TCGNRWRE 109
>gi|448079285|ref|XP_004194362.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
gi|359375784|emb|CCE86366.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
Length = 296
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CKH + Y+++QTRSADEP++ F C
Sbjct: 229 KKEIEKLHKQNLFEAQGATEKRAVTDRFTCGKCKHKRVSYYQMQTRSADEPLTTFCTC-- 286
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 287 ENCGNRW 293
>gi|322369843|ref|ZP_08044405.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
gi|320550179|gb|EFW91831.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
Length = 103
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + C +C + R +E I
Sbjct: 1 MEFCDECGSMMKA------NDGFWVCGSCGH---ETPRGDASEYVITEDQEASEIIESGG 51
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
G P TEV CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 52 GSNGLPTTEVQCPNCDNDQAYWYLQQIRSADESETRFFVCT--ECEHKWRE 100
>gi|45358992|ref|NP_988549.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
S2]
gi|340624740|ref|YP_004743193.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
gi|45047867|emb|CAF30985.1| Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa
subunit [Methanococcus maripaludis S2]
gi|339905008|gb|AEK20450.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
Length = 105
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
+EFCP C ++ LP + C C + + + +K K K+++ I
Sbjct: 2 VEFCPKCNNIM---LP---KGGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIEN 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T + CP C + +A + QTR ADEP + FY C K C H W E
Sbjct: 56 VDTL---PTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|396081040|gb|AFN82659.1| DNA-directed RNA polymerase subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 104
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +ML + + + SC C Y+ + +I + P++ K+ + +D
Sbjct: 1 MLFCPLCSSMLVVKRQPVG--NELSCRMCGYLYAISK--EITKATPMTPKKNDGLIDEDD 56
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ C + + ELQTRSADEPM+IFY C CK W E
Sbjct: 57 NLKFVSKCGKRCECGSEEVSFVELQTRSADEPMTIFYKCI--RCKKVWRE 104
>gi|146423462|ref|XP_001487659.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 213
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFTQDAMME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + K Q +F E TC CKH K Y+++QTRSADEP++ F C
Sbjct: 146 KQEIEKLNKQNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 203
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 204 ENCGNRW 210
>gi|18404735|ref|NP_566786.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
gi|9279599|dbj|BAB01057.1| unnamed protein product [Arabidopsis thaliana]
gi|21536551|gb|AAM60883.1| putative RNA polymerase I subunit [Arabidopsis thaliana]
gi|88011125|gb|ABD38906.1| At3g25940 [Arabidopsis thaliana]
gi|332643572|gb|AEE77093.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
Length = 119
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFS-CPACPYVCNMESRVKIKRKQPLSKKEIQ-----PIF 56
FC CGTML + + ++++ CP C N + + + +S ++I+ +F
Sbjct: 11 FCNLCGTML------VLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF 64
Query: 57 TQDAMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ E P+ + C C+H + VY QTRSADE + +Y C NC HR+ E
Sbjct: 65 GEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCP--NCAHRFTE 118
>gi|307194438|gb|EFN76736.1| DNA-directed RNA polymerase I subunit RPA12 [Harpegnathos saltator]
Length = 124
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP------YVCNMESRVKIKRKQPLSKKEIQPIF 56
FCP CG++L P + +C AC +M + + + K +
Sbjct: 15 FCPDCGSIL----PLLGDKGGVTCYACKKEWSSEVFGDMIMTLTLHFNSKHTYKSAKDAD 70
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ EGP E CP C++ K Y LQ RSADE ++FY C CK++ E
Sbjct: 71 SNKDDAEGPVVERRCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKYKETE 122
>gi|448320129|ref|ZP_21509617.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
gi|445606535|gb|ELY60439.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
Length = 102
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + + C +C + + + +E +
Sbjct: 1 MEFCDECGSMMKAD------DGIWECGSCGFT---KPQGDAAEYTLTDDQEASEVIESSE 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C H +A ++ Q RSADE + F++C+ C+++W E
Sbjct: 52 ETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICS--ECEYKWRE 99
>gi|170594631|ref|XP_001902067.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Brugia malayi]
gi|158591011|gb|EDP29626.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative
[Brugia malayi]
Length = 121
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C ML + +R ++C C + E+ K E+ I D
Sbjct: 10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQLSENPCIYVNKLMHEVDELTQIVA-DV 68
Query: 61 MMEG--PQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C+ +AV+ + Q+R A+E M ++Y+C N C HRW +
Sbjct: 69 VHDPTLPKTEDHPCPMCRGREAVFFQAQSRRAEEEMRLYYVCMNPTCAHRWTD 121
>gi|444705692|gb|ELW47089.1| DNA-directed RNA polymerase I subunit RPA12 [Tupaia chinensis]
Length = 127
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 1 MEFCPTCGTMLQYELPHM-DRPSRFSCPACPYVCNMESRV--------KIKRKQPLSKKE 51
++FCP CG++L LP D S C +V + E +V K+ +PLS +E
Sbjct: 14 LDFCPDCGSVL--PLPGAQDAVSCTRCGLSIHVRDFEEKVVRTSVVFHKLGTARPLSAEE 71
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
P F +GP + C C H YH Q RSADE ++FY C N
Sbjct: 72 -GPEF------QGPVLDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTN 114
>gi|256071836|ref|XP_002572244.1| transcription elongation factor s-II [Schistosoma mansoni]
gi|360043833|emb|CCD81379.1| putative transcription elongation factor s-II [Schistosoma mansoni]
Length = 318
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A+ G +T++ C CK K Y+++QTRSADEPM+ F C NC HRW
Sbjct: 266 QMAVTGGTETDLLRCGKCKQTKCTYNQVQTRSADEPMTTFVYC--NNCGHRW 315
>gi|408380972|ref|ZP_11178522.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
gi|407816237|gb|EKF86799.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
Length = 104
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM--ESRVKIKRKQPLSKKEIQPIFTQ 58
MEFCP CGT+L P DR F C +C Y + ES + + + ++ KE I T
Sbjct: 1 MEFCPKCGTVL---FPKGDR---FEC-SCGYQKKITKESLSEYEVSEKVAPKE-NVIVTG 52
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T+ CP C + A + QTR ADE + F C C W E
Sbjct: 53 DDVKTLPTTKAVCPKCGNRLAFWWLQQTRRADESETRFLRCT--KCGQTWRE 102
>gi|312066642|ref|XP_003136367.1| hypothetical protein LOAG_00779 [Loa loa]
gi|393911927|gb|EJD76511.1| DNA-directed RNA polymerase II subunit RPB9 [Loa loa]
Length = 121
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C ML + +R ++C C + E+ K E+ I D
Sbjct: 10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQLSENPCIYVNKLMHEVDELTQIVA-DV 68
Query: 61 MMEG--PQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C+ +AV+ + Q+R A+E M ++Y+C N +C HRW +
Sbjct: 69 VHDPTLPKTEDHPCPMCQGREAVFFQAQSRRAEEEMRLYYVCMNPSCAHRWTD 121
>gi|110669074|ref|YP_658885.1| DNA-directed RNA polymerase subunit M2 [Haloquadratum walsbyi DSM
16790]
gi|109626821|emb|CAJ53289.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
gi|148508173|gb|ABQ75964.1| DNA-directed RNA polymerase subunit M2 [uncultured haloarchaeon]
Length = 106
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQD 59
M+FC CG+M++ R + C +C Y + +S + Q + ++I I T++
Sbjct: 1 MQFCDECGSMMK------KRNEQMVCGSCGYQTDQDSAIGNFVSTQKQTDEDI--IETEE 52
Query: 60 -AMMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A EG T+ V C C+H A Y QT SADEP + F+ C K C +RW +
Sbjct: 53 GAEFEGKPTDDNVICDECEHTVAWYTIKQTGSADEPPTRFFKC--KECGYRWRD 104
>gi|150864771|ref|XP_001383742.2| hypothetical protein PICST_57286 [Scheffersomyces stipitis CBS
6054]
gi|149386027|gb|ABN65713.2| transcription elongation factor S-IIMeiotic DNA recombination
factor (STP-alpha) [Scheffersomyces stipitis CBS 6054]
Length = 294
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + ++ TE TC CKH K Y+++QTRSADEP++ F C
Sbjct: 227 KKEIEKLHKKNLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTC-- 284
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 285 ENCGNRW 291
>gi|301111244|ref|XP_002904701.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095031|gb|EEY53083.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 125
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC---NMESRVKIKRKQPLSKKEIQPIFTQD 59
FCP CGT+L H D S C AC Y C ++ S + R + K + + +
Sbjct: 17 FCPHCGTILD----HPDTNS-IVCSACEYRCRYQDLPSLTVVTRSE--DKPTPKWLDAEK 69
Query: 60 AMME--GP---QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
M E GP E TCP C + + Y+ LQ RSADE ++FY C K C H+++
Sbjct: 70 VMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFS 122
>gi|226478976|emb|CAX72983.1| RNA polymerase II elongation factor [Schistosoma japonicum]
Length = 317
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A+ G +T++ C CK K Y+++QTRSADEPM+ F C NC HRW
Sbjct: 265 QMAVTGGTETDLLRCGKCKQTKCTYNQVQTRSADEPMTTFVYC--NNCGHRW 314
>gi|352681801|ref|YP_004892325.1| transcription elongation factor TFS/RNA polymerase subunit M
[Thermoproteus tenax Kra 1]
gi|350274600|emb|CCC81245.1| archaeal transcription elongation factor TFS/RNA polymerase subunit
M [Thermoproteus tenax Kra 1]
Length = 109
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELP-HMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
M FCP G++L +P + CP C Y + K + S + + + D
Sbjct: 1 MRFCPKDGSLL---MPVRRGETTVLRCPKCGYEEPLNETTKNAYRSRSSIERREALLVAD 57
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E P+T+V CP C + +A QTR+ADEP + FY C C + W E
Sbjct: 58 KAFETLPKTKVVCPKCGNEEAYVWMQQTRAADEPPTRFYRCT--KCGYTWRE 107
>gi|71021153|ref|XP_760807.1| hypothetical protein UM04660.1 [Ustilago maydis 521]
gi|46100284|gb|EAK85517.1| hypothetical protein UM04660.1 [Ustilago maydis 521]
Length = 111
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 24/103 (23%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY----VCNMESRVKIKRKQPLSKKEIQPIF 56
M FCPTC L +L +++SC CPY V M +R +KRKQ
Sbjct: 1 MLFCPTCANCLIIQLDDHGN-NKWSCHTCPYEFPIVRQMTTRQHLKRKQV---------- 49
Query: 57 TQDAMMEGPQ-------TEVTCPACKHGKAVYHELQTRSADEP 92
D +M G + T+ CP C++ KA + +LQ RSADEP
Sbjct: 50 --DDVMGGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEP 90
>gi|448426140|ref|ZP_21583086.1| transcription termination factor Tfs [Halorubrum terrestre JCM
10247]
gi|448452560|ref|ZP_21593422.1| transcription termination factor Tfs [Halorubrum litoreum JCM
13561]
gi|448508060|ref|ZP_21615294.1| transcription termination factor Tfs [Halorubrum distributum JCM
9100]
gi|448518474|ref|ZP_21617551.1| transcription termination factor Tfs [Halorubrum distributum JCM
10118]
gi|445679631|gb|ELZ32091.1| transcription termination factor Tfs [Halorubrum terrestre JCM
10247]
gi|445697637|gb|ELZ49697.1| transcription termination factor Tfs [Halorubrum distributum JCM
9100]
gi|445705055|gb|ELZ56959.1| transcription termination factor Tfs [Halorubrum distributum JCM
10118]
gi|445808759|gb|EMA58817.1| transcription termination factor Tfs [Halorubrum litoreum JCM
13561]
Length = 109
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGGTAERDEGLAAEFESTTEQTGEEVIETE 54
Query: 59 D-AMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T+V C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTATDVVCDECDHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|325192573|emb|CCA27002.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 123
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME---SRVKIKRKQPLSKKEIQPIFTQD 59
FCP CG++ + LP ++ +C AC Y C E S V I + + E +
Sbjct: 15 FCPHCGSI--FTLPEINN---ITCSACAYHCKFEDLPSLVSITQSEQKPVPEWLEKEQKI 69
Query: 60 AMMEGP---QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++GP E TCP C + + Y+ LQ RSADE ++FY C K N
Sbjct: 70 KNVQGPARATVEETCPKCGNTEMEYYTLQMRSADEGQTVFYECKKCGTKSSVN 122
>gi|312137238|ref|YP_004004575.1| DNA-directed RNA polymerase, subunit m [Methanothermus fervidus DSM
2088]
gi|311224957|gb|ADP77813.1| DNA-directed RNA polymerase, subunit M [Methanothermus fervidus DSM
2088]
Length = 105
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--KIKRKQPLSKKEIQPIFTQ 58
MEFCP C ++ + + C C Y ++ V K + + K+E IFT+
Sbjct: 1 MEFCPKCKALM------VSKNGVLKCTRCGYEKKLDKNVINTYKTTEKVGKREA-VIFTK 53
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P + CP C + +A + QTR ADE + F+ C CK+ W E
Sbjct: 54 SEVKTMPTVKKECPKCGNNEAYWWLQQTRRADESETRFFRCT--KCKYTWRE 103
>gi|448309842|ref|ZP_21499695.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
gi|445588863|gb|ELY43102.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
Length = 102
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ + C +C Y + + + +E +
Sbjct: 1 MEFCDECGSMMKA------NDGIWECGSCGYT---KPKGDASKYTVTDDQEASEVIESSG 51
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ CP C + +A ++ Q RSADE + F++C C+++W E
Sbjct: 52 ETSLPETDAHCPECGNDRAHWYMQQIRSADESETRFFICT--ECEYKWRE 99
>gi|196000120|ref|XP_002109928.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
gi|190588052|gb|EDV28094.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
Length = 120
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLS-----KKEIQPIFT 57
FCP CG+++ P +C C +++S + ++ K ++ K +Q I
Sbjct: 11 FCPRCGSIM----PSPSSAQTINCIVCNNQISIDSYLGVETKSTITFNAIRSKGVQKIKD 66
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
+GP E C C + Y+ QTRSADE ++FY C
Sbjct: 67 DTQHAKGPIIERKCEKCGNNSMTYYTQQTRSADEGQTVFYSCT 109
>gi|225709550|gb|ACO10621.1| DNA-directed RNA polymerase II subunit RPB9 [Caligus rogercresseyi]
Length = 127
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FC C ML + ++ ++C C Y ++ K E+ I + D
Sbjct: 16 IRFCLECNNMLYPKEDKENKALMYACRNCDYKQLADNNCIYVNKIMHEVDEVTNIVS-DV 74
Query: 61 MME--GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P++E CP CKH +AV+ + ++R AD+ M ++Y+C C HRW E
Sbjct: 75 IGDPTLPRSEDHPCPKCKHKEAVFFQSESRKADDEMRLYYVCTYPQCAHRWTE 127
>gi|76803099|ref|YP_331194.1| DNA-directed RNA polymerase subunit M 2 [Natronomonas pharaonis DSM
2160]
gi|76558964|emb|CAI50560.1| transcription elongation factor TFS [Natronomonas pharaonis DSM
2160]
Length = 107
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ-D 59
M+FC CG+M+ + M C +C + + ++ + I + D
Sbjct: 1 MQFCDDCGSMMHAQGEAM------VCSSCGATTEKDEAKAAEFVSTDAQTDDDVIESSPD 54
Query: 60 AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T ++ C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 ADFEGKPTADDIICDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 103
>gi|448491581|ref|ZP_21608421.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
gi|445692581|gb|ELZ44752.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
Length = 106
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C +C + + Q + EI + DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCDSCGHEIGRDDGDDEWTTQSQVESEI--VDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P T CP C + +A ++ Q R+ADE + F++C C+H+W E
Sbjct: 55 EDKGLPTTTAQCPECDNDRAYWYMQQIRAADESETRFFVCT--ECEHKWRE 103
>gi|357542240|gb|AET85000.1| transcription elongation factor [Micromonas pusilla virus SP1]
Length = 169
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 20 RPSRFSCPACPYVCNMESRVKIK-RKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGK 78
RP + P PY ME R+ + RK+ L+K+ M+ + TC CK K
Sbjct: 92 RPEKL-WPDGPYAKVMEVRIHEEMRKEYLTKE-----------MKNQEGFFTCNRCKSKK 139
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Y++LQTRSADEPM+ F C NC W
Sbjct: 140 TTYYQLQTRSADEPMTTFVSCL--NCDKNW 167
>gi|150400651|ref|YP_001324417.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
gi|150013354|gb|ABR55805.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
Length = 103
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C ++ LP D C C + +E + K+ L K Q I +
Sbjct: 2 VKFCPKCNNIM---LPKEDN---LVCTVCGFEEELEKTESYELKEKLETK--QEIVVIED 53
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T + CP C + + + QTR ADEP + FY C C H W E
Sbjct: 54 VNTLPTTRIECPNCGNMEVYWWLQQTRCADEPETRFYKCT--KCGHTWRE 101
>gi|170115725|ref|XP_001889056.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636004|gb|EDR00304.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 121
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQP------LSKKE 51
+ FC CGT+L LP D + C C + ES V R P L +K
Sbjct: 6 LLFCADCGTLL--ALP-KDGETDVVCEQCQRQEPASSYESVVTTTRSHPDAFPSALRQKR 62
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+G CP+C H +A E+Q RSADE +IFY C +CKH W
Sbjct: 63 KTQTKHHAQGDQGTLVAEKCPSCGHLEAYSKEMQLRSADEGSTIFYTCV--SCKHGW 117
>gi|126342555|ref|XP_001362914.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEIRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|126342557|ref|XP_001363001.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEIRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|448738512|ref|ZP_21720536.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
gi|445801640|gb|EMA51969.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
Length = 106
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FC +CG+M+ + M C C + V S+ + I T +D
Sbjct: 1 MQFCDSCGSMMHADGDEM------VCSDCGARMPKDEEVAASFVSTESQSDSDVIETSED 54
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG P EV C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 AADEGKPTAEVECEECGAERAWYTIKQTGSADEPPTRFFKCT--ECGHRW 102
>gi|118380246|ref|XP_001023287.1| hypothetical protein TTHERM_00444250 [Tetrahymena thermophila]
gi|89305054|gb|EAS03042.1| hypothetical protein TTHERM_00444250 [Tetrahymena thermophila
SB210]
Length = 108
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE-IQPIFTQD 59
M FCP C L + ++ +RFSC C Y + +++ + K + I I Q
Sbjct: 1 MNFCPLCANALI--IQNVGGNNRFSCRTCTYFYPLLKKIETVTYSRMVKDDTIHDISLQK 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ + ++ CPAC+ A Q RS DE + Y+C KNC H W +
Sbjct: 59 ESLQTDK-DMICPACEKRGAYIRLEQDRSLDEGQTQHYIC--KNCSHTWKD 106
>gi|452838895|gb|EME40835.1| hypothetical protein DOTSEDRAFT_137176 [Dothistroma septosporum
NZE10]
Length = 122
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 24/123 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC-NMESRVKIKRKQPLS---------KK 50
+ FC CG +L+ + R + SC C + S+V +P + +
Sbjct: 7 LVFCTDCGNLLE---SNTGRKAYISCDVCGAQNKDTSSKVVTSHSKPSAFPSALRTRLRS 63
Query: 51 EIQPIFTQDAMMEGPQTEV----TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKH 106
++Q I D QTEV TC C + + ++ +Q RSADE ++FY C C H
Sbjct: 64 DVQEISEAD-----RQTEVIIKHTCENCGNDEVKFYTMQLRSADEGSTVFYTCL--KCNH 116
Query: 107 RWN 109
+WN
Sbjct: 117 KWN 119
>gi|392584823|gb|EIW74165.1| transcription elongation factor [Coniophora puteana RWD-64-598 SS2]
Length = 294
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAV 80
PS+F+ + + + E R KR Q + + Q+A +G Q C CK K
Sbjct: 210 PSKFATMSSSEMASEERRAADKRLQEENFFKSLAAAEQEAETDGFQ----CGRCKQRKCR 265
Query: 81 YHELQTRSADEPMSIFYMCANKNCKHRW 108
Y + QTRSADEPM+ F C NC +RW
Sbjct: 266 YRQAQTRSADEPMTTFVTCT--NCGNRW 291
>gi|324521357|gb|ADY47838.1| DNA-directed RNA polymerase II subunit RPB9 [Ascaris suum]
Length = 121
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP C ML + +R ++C C + E+ K E+ I D
Sbjct: 10 IKFCPECNNMLYPKEDKENRQLMYACRNCDHKQVSENPCIYVNKLMHEIDELTQIVA-DV 68
Query: 61 MMEG--PQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+TE CP C +AV+ + Q+R A+E M ++Y+C N C HRW +
Sbjct: 69 IHDPTLPKTEDHPCPNCGGREAVFFQAQSRRAEEEMRLYYVCMNPGCTHRWTD 121
>gi|452208133|ref|YP_007488255.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
gi|452084233|emb|CCQ37570.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
Length = 107
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI----- 55
M+FC CG+++ + M C +C R +R + E Q
Sbjct: 1 MQFCEECGSLMHVDGDEM------VCSSC----GASQRKDRERAESFVSTETQTDDDVIE 50
Query: 56 FTQDAMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ DA EG T+V C C H KA Y QT SADEP + F+ C C HRW
Sbjct: 51 SSPDADFEGKPTATDVICDECGHDKAWYTIKQTGSADEPPTRFFKCT--ECGHRW 103
>gi|12963545|ref|NP_075651.1| DNA-directed RNA polymerase I subunit RPA12 [Mus musculus]
gi|71153714|sp|Q791N7.1|RPA12_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|12275852|gb|AAG50161.1|AF230339_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12275854|gb|AAG50162.1|AF230340_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12834550|dbj|BAB22954.1| unnamed protein product [Mus musculus]
gi|12838841|dbj|BAB24350.1| unnamed protein product [Mus musculus]
gi|27695655|gb|AAH43016.1| Znrd1 protein [Mus musculus]
gi|148691368|gb|EDL23315.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
gi|148691369|gb|EDL23316.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
Length = 123
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + C C + ++ E +V K+ PLS
Sbjct: 14 LDFCPDCGSVL--PLPGIQ--DTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSV 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
E ++GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 70 DE-------GPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCI--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|395646358|ref|ZP_10434218.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
gi|395443098|gb|EJG07855.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
Length = 104
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +++ + + C C + +E ++ ++ KEI + D
Sbjct: 1 MMFCPQCNSLM------ISSGGQLKCRRCGCIQAIEKEEDLRITTTITPKEITIVDDDDK 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P V CP C++ A + Q RSADE F+ C C H W E
Sbjct: 55 VNTLPTITVRCPKCENNLAFWWLRQLRSADESEVRFFRCT--GCGHTWRE 102
>gi|350407595|ref|XP_003488137.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
impatiens]
Length = 123
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN--------MESRVKIKRKQPLSKKEIQP 54
FC CG++L P + C AC V M ++ +K + +
Sbjct: 14 FCSDCGSIL----PLLGDKGNVKCYACKRVWGPEAFGDMAMSYTIEFNKKNVYGSSKEKN 69
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++A EGP E CP C++ K Y LQ RSADE ++FY C CK + E
Sbjct: 70 DVMEEA--EGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKFKETE 121
>gi|448435800|ref|ZP_21586868.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
gi|445683235|gb|ELZ35635.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
Length = 106
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C +C + + Q + EI + DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCDSCGHEIGRDDGDDEWTTQSQVESEI--VDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P T CP C + +A ++ Q R+ADE + F++C C+H+W E
Sbjct: 55 EDKGLPTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCT--ECEHKWRE 103
>gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase subunit M [Pyrobaculum calidifontis JCM
11548]
gi|126249323|gb|ABO08414.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum calidifontis
JCM 11548]
Length = 124
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQPIFTQ 58
+ FCP ++L + DR + CP C Y + E R + + K + K Q I
Sbjct: 15 VRFCPNDKSLL-IPVKKGDR-TVLRCPKCGYEEEVSQEVRGRYQSKSAVENKN-QLIVVA 71
Query: 59 DAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+ + CP C H +A + QTR+ADEP + FY C C H W E
Sbjct: 72 DNAVNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKCT--KCGHVWRE 122
>gi|432331652|ref|YP_007249795.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
gi|432138361|gb|AGB03288.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
Length = 104
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +++ + + C C Y+ +ES + +K+ +KEI + + +
Sbjct: 2 FCPECKSLM------ISSGGQLKCRKCGYIRKIESTDNMTKKRERVEKEIMIVDDEGEKI 55
Query: 63 EG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T++ CP C + A + Q R+ADE F+ C C H W +
Sbjct: 56 KTLPTTQIKCPKCGNNLAFWWLRQLRAADESEVRFFKCT--ECDHTWRQ 102
>gi|330803649|ref|XP_003289816.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
gi|325080075|gb|EGC33646.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
Length = 136
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN---MESRVKIKRKQPLSKKEIQPIFTQ 58
+FCP C L Y +C C + N ++ + I + +K E + ++
Sbjct: 30 DFCPQCNAFLNYPRS---TSQLITCSLCTFSKNKFDIQDKKIITKSSLFNKTEAKKDDSE 86
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ G + CP C HGK + QTRSADE +IFY C C H+++
Sbjct: 87 ED--RGAIIDEKCPNCGHGKMYFKTAQTRSADEGQTIFYDCV--KCSHKFS 133
>gi|308162510|gb|EFO64898.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
P15]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 57 TQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
TQ+ M E P + TCP C HG+A Y +Q RSADE +IF+ C N K+R N
Sbjct: 49 TQEHMTENRPVIDETCPKCHHGQAYYSSIQMRSADEGQTIFFECCNCGHKYRTN 102
>gi|340717534|ref|XP_003397236.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
terrestris]
Length = 123
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES--RVKIKRKQPLSKKEIQPIFTQ-- 58
FC CG++L P + C AC V E+ + + +KK + +
Sbjct: 14 FCSDCGSIL----PLLGDRGNVKCYACKRVWGPEAFGDMAMSYTIEFNKKNVYGSSKEKN 69
Query: 59 DAM--MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
DAM EGP E CP C++ K Y LQ RSADE ++FY C CK + E
Sbjct: 70 DAMEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKFKETE 121
>gi|448484917|ref|ZP_21606318.1| transcription termination factor Tfs [Halorubrum arcis JCM 13916]
gi|445819350|gb|EMA69194.1| transcription termination factor Tfs [Halorubrum arcis JCM 13916]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGGTAERDEGLAAEFESTTEQTGEEVIETE 54
Query: 59 D-AMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T++ C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTATDIVCDECDHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|357114510|ref|XP_003559043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Brachypodium distachyon]
Length = 114
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRV---KIKRKQPLSKKE 51
M+FC C +L + R F+C C + C + V +R Q L
Sbjct: 4 MKFCRECNNILYPKEEKDRRVLLFACRNCEHQEVSDNTCVYRNEVHHAATERTQVLQDVA 63
Query: 52 IQPIFTQDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P P+T+ V C AC HG+AVY + R +E M++FY+C N +C +RW E
Sbjct: 64 SDPTL--------PRTKSVRCTACGHGEAVYFQATAR-GEEGMTLFYVCCNLSCGNRWRE 114
>gi|289742185|gb|ADD19840.1| transcription elongation factor tFIIS [Glossina morsitans
morsitans]
Length = 326
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRS+DEPM+ F MC C HRW
Sbjct: 274 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSSDEPMTTFVMC--NECGHRW 323
>gi|429190428|ref|YP_007176106.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|448326340|ref|ZP_21515706.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
gi|429134646|gb|AFZ71657.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|445612555|gb|ELY66276.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI----- 55
M+FC CG+M++ + HM C S +R+ E Q
Sbjct: 1 MQFCDDCGSMMKADGDHM--------VCTNENCGGSSERDREREDEFVTTESQTDDDVIE 52
Query: 56 FTQDAMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
++DA EG T+V C C + +A Y QT SADEP + F+ C C HRW
Sbjct: 53 SSEDANFEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 105
>gi|242069393|ref|XP_002449973.1| hypothetical protein SORBIDRAFT_05g026420 [Sorghum bicolor]
gi|241935816|gb|EES08961.1| hypothetical protein SORBIDRAFT_05g026420 [Sorghum bicolor]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 16 PHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME--GPQTE-V 69
P DR ++ ++C C + +S + E+ + ++D + P+T+ V
Sbjct: 10 PKEDRANKVLLYACRNCEHQEVADSNCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSV 69
Query: 70 TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
C AC HG+AV+ + TR D M++F++C N +C HRW +
Sbjct: 70 RCAACGHGEAVFFQATTRGED-GMALFFVCCNPSCGHRWRD 109
>gi|118396867|ref|XP_001030770.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila]
gi|89285084|gb|EAR83107.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila SB210]
Length = 136
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 25/126 (19%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN--------MESRVKI-KRKQPLSK--- 49
EFCP CG M++ L + C C ++C+ + SR++ ++KQ L +
Sbjct: 13 EFCPQCGNMIEMPL----YSDKVECSKCEFLCSVLEYKCAPIVSRIEFNQKKQWLEQYRA 68
Query: 50 ---KEIQPIFTQDAMMEGPQTEVT----CPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
K+I I +D + + T CP C H + +QTRSADE ++FY C +
Sbjct: 69 SQNKKIHGIEEEDLEDKHKHKKATLKQECPDCGHDTLYFWTVQTRSADEGSTVFYEC--Q 126
Query: 103 NCKHRW 108
+CK ++
Sbjct: 127 DCKFKF 132
>gi|380030611|ref|XP_003698937.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Apis
florea]
Length = 123
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL--SKKEIQPIFTQD- 59
FC CG++L P + +C AC V E+ + + +K + + Q+
Sbjct: 15 FCSDCGSIL----PLLGDKGNVTCYACKRVWGPEAFGDMSMSYTIHFNKTNVYTLSKQND 70
Query: 60 --AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EGP E CP C++ K Y LQ RSADE ++FY C CK + E
Sbjct: 71 EKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKFKETE 121
>gi|312281609|dbj|BAJ33670.1| unnamed protein product [Thellungiella halophila]
Length = 119
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQ-----PIFT 57
FC CGTML + + CP C N + + +S ++I+ +F
Sbjct: 11 FCNLCGTML-----ILKSATSAECPLCQTTRNAKEIIGKDIAYTVSAEDIRRELGISLFG 65
Query: 58 QDAM--MEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ E P+ + C C+H + VY QTRSADE + +Y C NC HR+ E
Sbjct: 66 EKTQEDAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCP--NCGHRFTE 118
>gi|448464448|ref|ZP_21598461.1| transcription termination factor Tfs [Halorubrum kocurii JCM 14978]
gi|448534821|ref|ZP_21621918.1| transcription termination factor Tfs [Halorubrum hochstenium ATCC
700873]
gi|445703972|gb|ELZ55892.1| transcription termination factor Tfs [Halorubrum hochstenium ATCC
700873]
gi|445815560|gb|EMA65483.1| transcription termination factor Tfs [Halorubrum kocurii JCM 14978]
Length = 109
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGGTAERDEGLAAEFESTTEQTGDEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T +V C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|449274195|gb|EMC83478.1| Transcription elongation factor A protein 2, partial [Columba
livia]
Length = 282
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 217 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 274
Query: 102 KNCKHRW 108
C +RW
Sbjct: 275 NECGNRW 281
>gi|197129381|gb|ACH45879.1| putative transcription elongation factor A2 [Taeniopygia guttata]
Length = 300
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|336121142|ref|YP_004575917.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
gi|334855663|gb|AEH06139.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
Length = 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME---SRVKIKRKQPLSKKEIQPIFT 57
++FCP C ++ LP + + C C Y ++E ++K K +K+EI I
Sbjct: 2 VKFCPKCKNIM---LP---KDGKLVCTVCGYEEDLEQTDESYELKEKIESNKQEIVVIED 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T + CP C + +A + QTR ADEP + FY C C + W E
Sbjct: 56 VNTL---PTTRIECPKCGNMEAYWWLQQTRCADEPETRFYKCT--KCGYTWRE 103
>gi|118100673|ref|XP_417425.2| PREDICTED: transcription elongation factor A protein 2 [Gallus
gallus]
Length = 300
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|308500670|ref|XP_003112520.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
gi|308267088|gb|EFP11041.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
Length = 119
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--------KIKRKQPLSKKEIQ 53
+FC CG +L LP P+ +C C ++ RV K+ + I+
Sbjct: 11 DFCGCCGAILG--LPPR-APATVTCKVCSTQWAVKERVEQLVSRIEKVYERTVADTDGIE 67
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107
+ DA++E C C H KA Y +QTRSADE ++FY C CKH+
Sbjct: 68 NDESADAVVEH-----ICSKCGHTKAAYSTMQTRSADEGQTVFYTCL--KCKHK 114
>gi|146422240|ref|XP_001487061.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
gi|146388182|gb|EDK36340.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRF---SCPACPY----VCNMESRVKIKRKQPLSKKEIQPI 55
FC +CG +L + + S PA + V + + L + ++
Sbjct: 9 FCTSCGNLLDAAGSNTQIECKVCTASYPASGFANLKVVTQSAEDAFPSQLKLKRSVVKTS 68
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+D M EG + CP C + + YH LQ RSADE ++FY C C +R+
Sbjct: 69 LNKDEMDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCT--GCGYRF 119
>gi|358377582|gb|EHK15265.1| hypothetical protein TRIVIDRAFT_217184 [Trichoderma virens Gv29-8]
Length = 130
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
FC C ML + +F+C C Y + +S + S E + TQD
Sbjct: 23 FRFCSECSNMLYPKEDEDAHKLQFTCRTCQYTEDAQSTCVFRNVLNNSSGETAGV-TQDV 81
Query: 61 MME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ P++ CP C H +AV+ + Q RSAD M +FY+C C H ++
Sbjct: 82 GSDPTLPRSNKACPRCSHQEAVFFQSQERSADTGMKLFYVCC--ECGHIFD 130
>gi|344257162|gb|EGW13266.1| DNA-directed RNA polymerase I subunit RPA12 [Cricetulus griseus]
Length = 123
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSK--KEIQPI 55
++FCP CG++L P CP C + V + E + +K K I
Sbjct: 14 LDFCPDCGSVL----PLPGTQDAVVCPRCGFSIDVRDFEGKA-VKTSVVFHKLGAAIPTS 68
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +GP + CP C H YH Q RSADE ++FY C NCK + E
Sbjct: 69 VEEGPESQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCV--NCKFQEKE 121
>gi|389846917|ref|YP_006349156.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
gi|388244223|gb|AFK19169.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCP-ACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
MEFC CG+++ E + CP + E + + E+ + D
Sbjct: 1 MEFCDECGSLMTPE------DGVWVCPNGHEKARDSEKEKAMVTTEGQESSEVVDMSDVD 54
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
GP T CP C+H A Y Q RSADE + F+ C C H+W E
Sbjct: 55 NAEIGPTTTAICPKCEHDVARYEMKQIRSADESETRFFTCV--ECDHKWRE 103
>gi|299116337|emb|CBN76141.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 FCPTCGTMLQYELPHMDRP--SRFSCPACPYVCNMESRVKIK-------RKQPLSKKEIQ 53
FCP+CG++L D P C C + ES +++ R +P +IQ
Sbjct: 5 FCPSCGSVL-------DPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQ 57
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + E CP C H K ++ +Q RSADE ++FY C +K CKH++
Sbjct: 58 RKGEKQELQRA-TVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKY 111
>gi|71408018|ref|XP_806438.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70870187|gb|EAN84587.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSK----------K 50
M FCP CGT+L E PH +RF+C +C YV + S + L K
Sbjct: 1 MFFCPFCGTLLLIE-PHHP-TNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANV 58
Query: 51 EIQPIFTQDAMMEGPQ-TEVTCPA----CKHGKAVYHELQTRSADEPMSIFYMCANKNCK 105
+ I T++ ++G Q V C C +A Y ++Q RSADEP + F+ C C
Sbjct: 59 KANGIKTKNEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCL--KCG 116
Query: 106 HRWNE 110
+W +
Sbjct: 117 FQWKQ 121
>gi|328778973|ref|XP_003249576.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like,
partial [Apis mellifera]
Length = 110
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL--SKKEIQPIFTQD- 59
FC CG++L P + +C AC + E+ + + +K + + Q+
Sbjct: 2 FCSDCGSIL----PLLGDKGNVTCYACKRIWGPEAFGDMSMSYTIHFNKTNVYALSKQND 57
Query: 60 --AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EGP E CP C++ K Y LQ RSADE ++FY C CK + E
Sbjct: 58 EKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKFKETE 108
>gi|326931955|ref|XP_003212089.1| PREDICTED: transcription elongation factor A protein 2-like
[Meleagris gallopavo]
Length = 274
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 207 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 264
Query: 102 KNCKHRW 108
C +RW
Sbjct: 265 NECGNRW 271
>gi|408405124|ref|YP_006863107.1| DNA-directed RNA polymerase subunit M [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365720|gb|AFU59450.1| putative DNA-directed RNA polymerase subunit M [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 94
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 26 CPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEG------PQTEVTCPACKHGKA 79
CP C + + K + +KK +MEG P T + CP C +G A
Sbjct: 4 CPKCGFKAKKGKQEKNATTKQENKKTTTGSDASLKVMEGDSVEALPTTNIECPQCGNGTA 63
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ LQTRSADE + FY C C H W
Sbjct: 64 FWWMLQTRSADEATTQFYRCT--KCSHTW 90
>gi|390594980|gb|EIN04388.1| DNA-directed RNA polymerase I kDa polypeptide [Punctularia
strigosozonata HHB-11173 SS5]
Length = 126
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQ-----PLSKKEIQPI 55
FCP CGT+L +LP D PS C C + ++I + P + ++ +
Sbjct: 13 FCPDCGTLL--DLPRGDEPS-VKCDQCGREEPSSSYDNIEIVTRSNPDALPSALRQKRKT 69
Query: 56 FTQDAMMEGPQTEVT--CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T+ E +VT CP+C H +A E+Q RS DE +I Y C +C H W
Sbjct: 70 QTKAHSGESALLKVTERCPSCGHDEAYSKEMQLRSVDEGSTILYTCV--SCGHGW 122
>gi|159162918|pdb|1QYP|A Chain A, Thermococcus Celer Rpb9, Nmr, 25 Structures
Length = 57
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
P T++TCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 12 PTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGHTW 53
>gi|340373919|ref|XP_003385487.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Amphimedon queenslandica]
Length = 130
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Query: 1 MEFCPTCGTML-------QYELPHMDRPSRFSCPA---CPYVCNMESRVKIKRKQPLSKK 50
++FC C ML + L H R +S PA C YV + V
Sbjct: 19 IQFCQECNNMLYPKEDKERKVLLHACRNCEYSQPAGDSCIYVNKITHEVD-------ELT 71
Query: 51 EIQPIFTQDAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+I +QD + P+T + CP C H AV+ + Q++ A+E M ++Y+C ++ C HRW
Sbjct: 72 QIIADVSQDPTL--PRTKDHPCPKCDHRDAVFFQSQSKKAEEEMKLYYVCCSEGCGHRWT 129
Query: 110 E 110
E
Sbjct: 130 E 130
>gi|71421900|ref|XP_811947.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70876670|gb|EAN90096.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 167
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSK----------K 50
M FCP CGT+L E PH +RF+C +C YV + S + L K
Sbjct: 46 MFFCPFCGTLLLIE-PHHP-TNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANV 103
Query: 51 EIQPIFTQDAMMEGPQ-TEVTCPA----CKHGKAVYHELQTRSADEPMSIFYMCANKNCK 105
+ I T++ ++G Q V C C +A Y ++Q RSADEP + F+ C C
Sbjct: 104 KANGIKTKNEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCL--KCG 161
Query: 106 HRWNE 110
+W +
Sbjct: 162 FQWKQ 166
>gi|147901281|ref|NP_001089046.1| transcription elongation factor A (SII), 1 [Xenopus laevis]
gi|1325972|emb|CAA66255.1| TFIIS elongation factor [Xenopus laevis]
gi|1389556|dbj|BAA11672.1| transcriptional factor [Xenopus laevis]
gi|47122876|gb|AAH70555.1| LOC594866 protein [Xenopus laevis]
Length = 303
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G +T++ TC CK Y ++QTRSADEPM+ F C
Sbjct: 236 KEMRKNLTKEAIREHQMARTGGTETDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVFC-- 293
Query: 102 KNCKHRW 108
NC +RW
Sbjct: 294 NNCGNRW 300
>gi|395506561|ref|XP_003757600.1| PREDICTED: transcription elongation factor A protein 2 [Sarcophilus
harrisii]
Length = 300
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|302757237|ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
gi|302775260|ref|XP_002971047.1| hypothetical protein SELMODRAFT_95006 [Selaginella moellendorffii]
gi|300161029|gb|EFJ27645.1| hypothetical protein SELMODRAFT_95006 [Selaginella moellendorffii]
gi|300170701|gb|EFJ37302.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
Length = 114
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK--IKRKQPLSKKEIQPIFTQ 58
M+FC C +L P DR + AC + E+ + R + + + Q
Sbjct: 4 MKFCRECNNIL---YPKEDRDQKLLLYACRNCDHQEAADNNCVYRNEVHHTADERTQVLQ 60
Query: 59 DAMME--GPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+T +V C CKHG+AV+ + R +E M++F++C N NC +RW +
Sbjct: 61 DVASDPTLPRTKDVRCSRCKHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|259089472|ref|NP_001158536.1| DNA-directed RNA polymerase II subunit I [Oncorhynchus mykiss]
gi|225704662|gb|ACO08177.1| DNA-directed RNA polymerase II subunit I [Oncorhynchus mykiss]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|348508215|ref|XP_003441650.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Oreochromis niloticus]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|410909690|ref|XP_003968323.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Takifugu rubripes]
gi|47215803|emb|CAG02857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|302789293|ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
gi|302811122|ref|XP_002987251.1| hypothetical protein SELMODRAFT_125489 [Selaginella moellendorffii]
gi|300145148|gb|EFJ11827.1| hypothetical protein SELMODRAFT_125489 [Selaginella moellendorffii]
gi|300156045|gb|EFJ22675.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
Length = 115
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + ++C C + ++ + + S E +
Sbjct: 4 MKFCRECNNIL---YPKEDRDQKILLYACRNCDHQEVADNNCVYRNEVHHSAGERTQVL- 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ V C CKHG+AV+ + TR +E M++F++C N NC +RW +
Sbjct: 60 QDVASDPTLPRTKSVRCVRCKHGEAVFFQATTR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|448437410|ref|ZP_21587433.1| transcription termination factor Tfs [Halorubrum tebenquichense DSM
14210]
gi|445681137|gb|ELZ33576.1| transcription termination factor Tfs [Halorubrum tebenquichense DSM
14210]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGGTAERDEGLAAEFESTTEQTGEEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T +V C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|335433990|ref|ZP_08558799.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|335438373|ref|ZP_08561120.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334892322|gb|EGM30558.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898216|gb|EGM36331.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPAC----PYVCNMESRVKIKRKQPLSKKEIQPIF 56
MEFC CG+M++ E + C +C P + ES + Q +
Sbjct: 1 MEFCDECGSMMKTE------GEMWVCGSCGAEKPREADGESGMVTTEGQQEGEIVDLSES 54
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+DA P TE CP C + +A + Q RSADE + F+ C C H+W E
Sbjct: 55 EEDAR---PTTEAHCPECGNDRAFWEMKQIRSADESETRFFTCT--ECGHKWRE 103
>gi|255730739|ref|XP_002550294.1| hypothetical protein CTRG_04592 [Candida tropicalis MYA-3404]
gi|240132251|gb|EER31809.1| hypothetical protein CTRG_04592 [Candida tropicalis MYA-3404]
Length = 312
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 70 TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
TC CKH K Y+++QTRSADEP++ F C +NC +RW
Sbjct: 273 TCGKCKHKKVSYYQMQTRSADEPLTTFCTC--ENCGNRW 309
>gi|410924055|ref|XP_003975497.1| PREDICTED: transcription elongation factor A protein 1-like
[Takifugu rubripes]
Length = 311
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ + G QT++ TC CK Y ++QTRSADEPM+ F C+
Sbjct: 244 KEIRKNLTKEAVRDHQMATTGGTQTDLFTCGKCKGKNCTYTQVQTRSADEPMTTFVFCS- 302
Query: 102 KNCKHRW 108
C +RW
Sbjct: 303 -GCGNRW 308
>gi|354490663|ref|XP_003507476.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Cricetulus griseus]
Length = 174
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSK--KEIQPI 55
++FCP CG++L P CP C + V + E + +K K I
Sbjct: 65 LDFCPDCGSVL----PLPGTQDAVVCPRCGFSIDVRDFEGKA-VKTSVVFHKLGAAIPTS 119
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +GP + CP C H YH Q RSADE ++FY C NCK + E
Sbjct: 120 VEEGPESQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCV--NCKFQEKE 172
>gi|319099135|ref|NP_001187618.1| DNA-directed RNA polymerase II subunit rpb9 [Ictalurus punctatus]
gi|308323514|gb|ADO28893.1| DNA-directed RNA polymerase II subunit rpb9 [Ictalurus punctatus]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYRQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|41615166|ref|NP_963664.1| hypothetical protein NEQ377 [Nanoarchaeum equitans Kin4-M]
gi|40068890|gb|AAR39225.1| NEQ377 [Nanoarchaeum equitans Kin4-M]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRF-SCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
MEFCP G++L +P + + CP C Y + S V IK + ++ + I ++
Sbjct: 1 MEFCPKDGSIL---IPKKEGDKTYLVCPVCGYKKEVTSLV-IKEEVKKKEELGKGIAEKE 56
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + V CP C + VY LQTR++DE +IFY C C + W E
Sbjct: 57 TIYSKAKG-VKCPKCSSEEVVYFTLQTRASDEAETIFYKCL--KCGYTWRE 104
>gi|443898238|dbj|GAC75575.1| RNA polymerase II subunit 9 [Pseudozyma antarctica T-34]
Length = 133
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK-IKRKQPLSKKEIQPIFTQD 59
+ FC C +L E+ + ++C C Y ESR + R +S + QP D
Sbjct: 4 LHFCAECNNLLYPEVDRTNHVLLYACRNCNY--QQESRESLVYRNDLMSVTKEQPGIV-D 60
Query: 60 AMMEGPQT----EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+M+ P +++CP+C HG+AV + Q++ M +FY+CA C H + +
Sbjct: 61 NLMKDPTLRRTHDLSCPSCGHGEAVLFQDQSKRILNRMILFYVCA--KCNHLFRD 113
>gi|241951826|ref|XP_002418635.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
gi|223641974|emb|CAX43938.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
Length = 123
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-------VCNMESRVKIKRKQPLSKKEIQPI 55
FC CG +L D A P V S K ++ ++
Sbjct: 9 FCNYCGNLLDSHSSSSDIKCTVCSAAYPKSKFANLKVVTKSSDDAFPSKLKSARSVVKTS 68
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+D + EG + CP C + + YH LQ RSADE ++FY C NC +R+
Sbjct: 69 LKKDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCT--NCGYRF 119
>gi|448440674|ref|ZP_21588752.1| transcription termination factor Tfs [Halorubrum saccharovorum DSM
1137]
gi|445690060|gb|ELZ42281.1| transcription termination factor Tfs [Halorubrum saccharovorum DSM
1137]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGGTAERDEGLAAEFESTTEQTGDEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T ++ C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTANDIVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|66361609|ref|XP_627328.1| transcription elongation factor TFIIS [Cryptosporidium parvum Iowa
II]
gi|46228708|gb|EAK89578.1| transcription elongation factor TFIIS [Cryptosporidium parvum Iowa
II]
Length = 332
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ TC CK K Y+++QTRSADEPM+ F C NC +RW
Sbjct: 292 QFTCGKCKTNKTTYYQMQTRSADEPMTTFVRCL--NCGNRW 330
>gi|225704982|gb|ACO08337.1| DNA-directed RNA polymerase II subunit I [Oncorhynchus mykiss]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
QD + P+TE CP C H KAV+ + + A++ M ++Y+C +C HRW
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKKAVFFQSHSMKAEDAMRLYYVCTAPHCGHRW 124
>gi|340507633|gb|EGR33565.1| RNA polymerase i subunit, putative [Ichthyophthirius multifiliis]
Length = 340
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN--------MESRVKIKRKQPLSKK--- 50
EFCP CG ++ E+P + C C ++C+ + S+++ K+P ++
Sbjct: 223 EFCPQCGYLI--EMPIY--SDKVECNKCEFICSVLEYKCPPIISKIQFSHKKPWLEQYNA 278
Query: 51 EIQPIFTQDAMMEGPQTEVT--CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+I+ + ++ + ++ CP C + + +QTRSADE ++FY CA +CKH +
Sbjct: 279 KIRGVDDKEQNFNQKKAKIKSECPQCGYHTMYFWTVQTRSADEGSTVFYECA--DCKHTY 336
Query: 109 NE 110
+
Sbjct: 337 TQ 338
>gi|170574991|ref|XP_001893050.1| hypothetical protein [Brugia malayi]
gi|158601125|gb|EDP38119.1| conserved hypothetical protein [Brugia malayi]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE----IQPIFT 57
EFC CGT+L +P P +C C + +K R + + + E + +
Sbjct: 4 EFCSECGTVL--PIP-ATAPVTITCS----YCRTQWHIKPIRNKLVYRSEKVYQNRVLNA 56
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ +E P + C C HGK Y QTRSADE ++FYMC
Sbjct: 57 NEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMC 98
>gi|312088800|ref|XP_003146000.1| hypothetical protein LOAG_10428 [Loa loa]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME--SRVKIKRKQPLSKKEIQPIFTQD 59
EFC CGT+L LP P +C C +++ + R + + +K + ++
Sbjct: 4 EFCSECGTVL--PLP-ATAPVTITCSYCRTQWHIKPIRNKLVYRSEKIYQKRMMD--AKE 58
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKN 103
+E P + C C HGK Y QTRSADE ++FYMC N
Sbjct: 59 GALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKCN 102
>gi|195338531|ref|XP_002035878.1| GM14545 [Drosophila sechellia]
gi|194129758|gb|EDW51801.1| GM14545 [Drosophila sechellia]
Length = 311
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 259 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 308
>gi|358418405|ref|XP_003583931.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Bos taurus]
Length = 129
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 30/127 (23%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---------ESRV--------KIKR 43
++FCP CG++L LP + +C C + N+ E +V K+
Sbjct: 14 LDFCPDCGSVL--PLPGVQ--DAVACTRCGFSINVRVLTACADFEGKVVKTSVVFNKLGT 69
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKN 103
PLS +E P F +GP + C C H YH Q RSADE ++FY C N
Sbjct: 70 AMPLSMEE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--N 120
Query: 104 CKHRWNE 110
CK + E
Sbjct: 121 CKFQEKE 127
>gi|67588103|ref|XP_665338.1| transcription elongation factor TFIIS.h [Cryptosporidium hominis
TU502]
gi|54655975|gb|EAL35108.1| transcription elongation factor TFIIS.h [Cryptosporidium hominis]
Length = 332
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ TC CK K Y+++QTRSADEPM+ F C NC +RW
Sbjct: 292 QFTCGKCKTNKTTYYQMQTRSADEPMTTFVRCL--NCGNRW 330
>gi|291391943|ref|XP_002712400.1| PREDICTED: transcription elongation factor A 1 isoform 1
[Oryctolagus cuniculus]
Length = 300
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 233 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|448529168|ref|ZP_21620427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
gi|445709601|gb|ELZ61427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C +C + Q + EI + DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCDSCGNEIGRDDSDDEWTTQSQVESEI--VDVSDA 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P T CP C + +A ++ Q R+ADE + F++C C+H+W E
Sbjct: 55 EDKGLPTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCT--ECEHKWRE 103
>gi|17136888|ref|NP_476967.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|442627872|ref|NP_001260457.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
gi|135660|sp|P20232.1|TFS2_DROME RecName: Full=Transcription elongation factor S-II; AltName:
Full=RNA polymerase II elongation factor DMS-II;
AltName: Full=TFIIS
gi|7921|emb|CAA37710.1| unnamed protein product [Drosophila melanogaster]
gi|6713129|gb|AAA92864.2| transcription elongation factor [Drosophila melanogaster]
gi|7298202|gb|AAF53436.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|15291997|gb|AAK93267.1| LD34766p [Drosophila melanogaster]
gi|220942248|gb|ACL83667.1| TfIIS-PA [synthetic construct]
gi|440213800|gb|AGB92992.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
Length = 313
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 261 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 310
>gi|440793835|gb|ELR15006.1| transcription factor SII (TFIIS) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 145
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN---MESRVKIKRKQPLSKKEIQPIFTQD 59
FC CG +L + S+ +C C + N +E V + + +P S + +D
Sbjct: 40 FCDNCGCLLP-----LTADSQINCKMCGFNVNADELEEHVIVTKAKPKSSIRQKGKKEED 94
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
+ + CP C HGK ++ +Q RS DE ++FY C
Sbjct: 95 KSNDRAIIDEKCPKCGHGKMYFYTMQLRSVDEGSTVFYECV 135
>gi|168060795|ref|XP_001782379.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666171|gb|EDQ52833.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + ++C C + + + R + L + +
Sbjct: 4 MKFCRECNNIL---YPREDRDKKVLLYACRNCDHQ-EVADNNCVYRNEVLHSADERTQVL 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ V C C+HG+AV+ + R +E M++F++C N NC +RW +
Sbjct: 60 QDIASDPTLPRTKNVRCANCQHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|291391945|ref|XP_002712401.1| PREDICTED: transcription elongation factor A 1 isoform 2
[Oryctolagus cuniculus]
Length = 279
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 212 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 269
Query: 102 KNCKHRW 108
C +RW
Sbjct: 270 NECGNRW 276
>gi|219852680|ref|YP_002467112.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
gi|219546939|gb|ACL17389.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FCP C +++ + + C C Y+ ++ +++ ++ S+KEI +
Sbjct: 2 FCPQCKSLM------ISSAGQLKCKRCGYIRDITGADQMRIEEKRSEKEIIFFDEDQEVA 55
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P + CP C+H A + Q RSADE F+ C C + W E
Sbjct: 56 TKPTFAIKCPECEHNLAFWWMRQLRSADESEVRFFKCV--KCGYTWRE 101
>gi|378706130|gb|AFC34931.1| hypothetical protein OtV6_023c [Ostreococcus tauri virus RT-2011]
Length = 171
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 27 PACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
P PY ME R+ K RK L+ Q + Q+ TC CK K Y++LQ
Sbjct: 100 PDGPYAKMMEERIIKEMRKAYLA----QEVKNQEGFF-------TCGRCKSKKTTYYQLQ 148
Query: 86 TRSADEPMSIFYMCANKNCKHRW 108
TRSADEPM+ F C NC W
Sbjct: 149 TRSADEPMTTFVTCL--NCDRNW 169
>gi|195391074|ref|XP_002054188.1| GJ24301 [Drosophila virilis]
gi|194152274|gb|EDW67708.1| GJ24301 [Drosophila virilis]
Length = 121
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 3 FCPTCGTMLQ----------YELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEI 52
FCP+CG++L Y P +S Y + S K LSKK
Sbjct: 10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYSGETSEYTIHFNSYDPSK----LSKKGN 65
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ T +A +GP E CP C + K Y LQ RSADE ++F+ C CK++ +E
Sbjct: 66 RETDTAEA--DGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCL--KCKYKESE 119
>gi|356556024|ref|XP_003546327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Glycine max]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 23/122 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQ-PIF 56
M+FC C +L P DR + F+C C + ++ + + EIQ P+
Sbjct: 4 MKFCRECNNIL---YPKEDREQKVLLFACRNCDHQ-------EVADNFCVYRNEIQHPVG 53
Query: 57 TQDAMMEG-------PQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ +++ P+T+ V C C HG+AV+ + R +E M++F++C N NC HRW
Sbjct: 54 ERTQVLQDVAADPTLPRTKSVRCTQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRW 112
Query: 109 NE 110
+
Sbjct: 113 RD 114
>gi|159463406|ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
gi|158283921|gb|EDP09671.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
Length = 124
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 22/122 (18%)
Query: 3 FCPTCGTMLQYELPHMDRPSR--FSCPACPYVCNME--SRVKIKRKQPLS----KKEIQP 54
FCPT G +L H+D P R +CP Y ++ S VK+ + + + ++P
Sbjct: 9 FCPTSGYLL-----HLD-PKRQVAACPVSGYERSLAELSSVKVVLRTDMEDYRRRFALEP 62
Query: 55 IFT---QDAMMEGPQTEVT---CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + +++G + CP C H + Y+ +Q RSADE ++FY C KNC H++
Sbjct: 63 LVKSVEDEELLKGRKRATVDEPCPKCNHRQLEYYTMQLRSADEGQTVFYEC--KNCGHKY 120
Query: 109 NE 110
++
Sbjct: 121 SQ 122
>gi|313225202|emb|CBY20996.1| unnamed protein product [Oikopleura dioica]
Length = 295
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMM-------EGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ FT++A+ EG QT++ +C CK K Y +LQTRSADEPM+ F C
Sbjct: 228 QELRKKFTKEAINDHQMAQNEGTQTDMFSCGKCKSKKCTYTQLQTRSADEPMTTFVYCM- 286
Query: 102 KNCKHRW 108
C +RW
Sbjct: 287 -ACGNRW 292
>gi|313221451|emb|CBY32201.1| unnamed protein product [Oikopleura dioica]
Length = 295
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMM-------EGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ FT++A+ EG QT++ +C CK K Y +LQTRSADEPM+ F C
Sbjct: 228 QELRKKFTKEAINDHQMAQNEGTQTDMFSCGKCKSKKCTYTQLQTRSADEPMTTFVYCM- 286
Query: 102 KNCKHRW 108
C +RW
Sbjct: 287 -ACGNRW 292
>gi|119607145|gb|EAW86739.1| transcription elongation factor A (SII), 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 220 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 277
Query: 102 KNCKHRW 108
C +RW
Sbjct: 278 NECGNRW 284
>gi|355697956|gb|EHH28504.1| hypothetical protein EGK_18954, partial [Macaca mulatta]
gi|355779691|gb|EHH64167.1| hypothetical protein EGM_17319, partial [Macaca fascicularis]
Length = 300
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|194857365|ref|XP_001968937.1| GG24225 [Drosophila erecta]
gi|190660804|gb|EDV57996.1| GG24225 [Drosophila erecta]
Length = 313
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 261 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 310
>gi|119607146|gb|EAW86740.1| transcription elongation factor A (SII), 1, isoform CRA_b [Homo
sapiens]
Length = 260
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 193 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 250
Query: 102 KNCKHRW 108
C +RW
Sbjct: 251 NECGNRW 257
>gi|66816447|ref|XP_642233.1| RNA polymerase II elongation factor [Dictyostelium discoideum AX4]
gi|74856708|sp|Q54YG9.1|TCEA1_DICDI RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor tf2s
gi|60470313|gb|EAL68293.1| RNA polymerase II elongation factor [Dictyostelium discoideum AX4]
Length = 319
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 56 FTQDAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
F +A M G E T C CK K Y +LQTRSADEP + F C K C +RW
Sbjct: 259 FNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRW 316
>gi|417398602|gb|JAA46334.1| Putative transcription elongation factor a protein 1 [Desmodus
rotundus]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|390348322|ref|XP_799219.3| PREDICTED: transcription elongation factor S-II-like
[Strongylocentrotus purpuratus]
Length = 306
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAM-------MEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+++ FT++A+ EG ++ + TC C+ Y+++QTRSADEPM+ F C
Sbjct: 239 KQMRQKFTKEAINDHQLAHTEGTRSALLTCGKCRKKNCTYNQMQTRSADEPMTTFVFC-- 296
Query: 102 KNCKHRW 108
+C HRW
Sbjct: 297 NDCGHRW 303
>gi|358338299|dbj|GAA56632.1| DNA-directed RNA polymerase III subunit RPC10 [Clonorchis sinensis]
Length = 763
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV----KIKRKQPLSKKEIQPIFTQ 58
FCP C ++L E S P C Y + + K ++ L +E
Sbjct: 653 FCPLCHSLLMVEESANCYSLNCSTPCCSYQWFVTQPLVQEHKPRQDVRLRLEEDAVFSID 712
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D Q E CP C H +A + ++QTRSADEP + Y C C+H W E
Sbjct: 713 DQYSSSAQIEEKCPKCGHNRAYFVQMQTRSADEPSTTKYSCM--KCRHIWTE 762
>gi|291387971|ref|XP_002710525.1| PREDICTED: transcription elongation factor A 1 [Oryctolagus
cuniculus]
Length = 329
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|114620135|ref|XP_001151569.1| PREDICTED: transcription elongation factor A protein 1 isoform 3
[Pan troglodytes]
gi|397505491|ref|XP_003823294.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Pan paniscus]
gi|410212654|gb|JAA03546.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251520|gb|JAA13727.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298810|gb|JAA28005.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341537|gb|JAA39715.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 280
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|45439355|ref|NP_958845.1| transcription elongation factor A protein 1 isoform 2 [Homo
sapiens]
gi|332213783|ref|XP_003256010.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Nomascus leucogenys]
gi|426359605|ref|XP_004047058.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|37072|emb|CAA40484.1| transcription elongation factor [Homo sapiens]
Length = 280
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|403300334|ref|XP_003940898.1| PREDICTED: transcription elongation factor A protein 1 [Saimiri
boliviensis boliviensis]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|237874284|ref|NP_001006013.2| DNA-directed RNA polymerase II subunit RPB9 [Danio rerio]
gi|169145933|emb|CAQ13819.1| novel protein similar to vertebrate polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa (POLR2I) [Danio rerio]
Length = 126
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
+ FC C ML + +R ++C C Y ++ K E+ I
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVA 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|378726250|gb|EHY52709.1| DNA-directed RNA polymerase I subunit A12 [Exophiala dermatitidis
NIH/UT8656]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPAC-PYVCNMESRVKIKRKQPLS--------KKE 51
+ FC CG++L +P + C C Y + S+V +P + E
Sbjct: 7 LLFCDACGSLLPRIVPGQHKDDMVKCEDCFQYTKDTSSKVITSHSRPSAFPSALRAKHSE 66
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+Q I +D +E CP C + YH Q RSADE ++FY C
Sbjct: 67 VQAINAEDLQVEAVIAR-DCPNCHRSEMFYHTKQLRSADEGTTVFYRC 113
>gi|224101577|ref|XP_002312337.1| predicted protein [Populus trichocarpa]
gi|222852157|gb|EEE89704.1| predicted protein [Populus trichocarpa]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + ++C C + + + + S E +
Sbjct: 4 MKFCRECNNIL---YPREDRDQKILLYACRNCDHQEIADDNCVYRNEVHHSVAERTQVL- 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ VTC CKH +AV+ + +R +E M++F++C N NC HRW +
Sbjct: 60 QDVAADPTLPRTKAVTCTVCKHPEAVFFQATSR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|114620133|ref|XP_528135.2| PREDICTED: transcription elongation factor A protein 1 isoform 5
[Pan troglodytes]
gi|397505489|ref|XP_003823293.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Pan paniscus]
gi|410212656|gb|JAA03547.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251522|gb|JAA13728.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298812|gb|JAA28006.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341539|gb|JAA39716.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|339443|gb|AAA61138.1| transcription elongation factor SII [Homo sapiens]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|167045007|gb|ABZ09671.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
MEFCP C L+ + SCP C YV ++ IK K + E + D
Sbjct: 1 MEFCPKCEVRLK------NDNGLLSCPKCKYV-KEKTDKSIKEKPEETNSEFLVMDESDL 53
Query: 60 AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +G ++ ++ C C + + V LQTRSADEP + FY C C + W +
Sbjct: 54 SQAKGLESTIKIDCEKCHNQEGVCWSLQTRSADEPETRFYRCT--KCNYTWRD 104
>gi|5803191|ref|NP_006747.1| transcription elongation factor A protein 1 isoform 1 [Homo
sapiens]
gi|386781537|ref|NP_001247637.1| transcription elongation factor A protein 1 [Macaca mulatta]
gi|332213781|ref|XP_003256009.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Nomascus leucogenys]
gi|426359603|ref|XP_004047057.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|1174652|sp|P23193.2|TCEA1_HUMAN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|37074|emb|CAA44470.1| transcription elongation factor [Homo sapiens]
gi|47940496|gb|AAH72460.1| Transcription elongation factor A (SII), 1 [Homo sapiens]
gi|49457436|emb|CAG47017.1| TCEA1 [Homo sapiens]
gi|54696852|gb|AAV38798.1| transcription elongation factor A (SII), 1 [Homo sapiens]
gi|61355862|gb|AAX41184.1| transcription elongation factor A 1 [synthetic construct]
gi|158261931|dbj|BAF83143.1| unnamed protein product [Homo sapiens]
gi|380815988|gb|AFE79868.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|383421129|gb|AFH33778.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|384942088|gb|AFI34649.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|114052218|ref|NP_001039390.1| transcription elongation factor A protein 1 [Bos taurus]
gi|122135281|sp|Q29RL9.1|TCEA1_BOVIN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|88954354|gb|AAI14118.1| Transcription elongation factor A (SII), 1 [Bos taurus]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|61365803|gb|AAX42766.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|60829875|gb|AAX36898.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|71043668|ref|NP_001020906.1| transcription elongation factor A protein 1 [Rattus norvegicus]
gi|293353479|ref|XP_002728223.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Rattus norvegicus]
gi|392333220|ref|XP_003752832.1| PREDICTED: transcription elongation factor A protein 1-like [Rattus
norvegicus]
gi|73919859|sp|Q4KLL0.1|TCEA1_RAT RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|68533992|gb|AAH99141.1| Transcription elongation factor A (SII) 1 [Rattus norvegicus]
gi|149040017|gb|EDL94101.1| rCG63250 [Rattus norvegicus]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|432893291|ref|XP_004075906.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Oryzias latipes]
Length = 126
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
+ FC C ML + +R ++C C Y ++ K E+ I
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVA 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|300712134|ref|YP_003737948.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|448295824|ref|ZP_21485887.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|299125817|gb|ADJ16156.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|445583253|gb|ELY37585.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M+ M + + C C + + E+ +++
Sbjct: 1 MEFCDECGSMM------MAQDEVWVCKGCGHEQPKGDSASYTTTDAQEESEVIESGAENS 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 55 GL--PTTSAQCPECDNDRAYWYMQQIRSADESETRFFVCT--ECEHKWRE 100
>gi|225719828|gb|ACO15760.1| Transcription elongation factor A protein 1 [Caligus clemensi]
Length = 296
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 15 LPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVT-CPA 73
L + PS+F+ + + E + K++ K+ I +Q A ++G +T++ C
Sbjct: 206 LTGIIEPSKFAVMTADEMASDEVK---KQRAAFVKQGIDA--SQLAQIQGTKTDLLKCGK 260
Query: 74 CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C Y+++QTRSADEPM+ F +C C +RW
Sbjct: 261 CGKSDCTYNQIQTRSADEPMTTFVLC--NACGNRW 293
>gi|74146960|dbj|BAE25455.1| unnamed protein product [Mus musculus]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|195437119|ref|XP_002066492.1| GK18066 [Drosophila willistoni]
gi|194162577|gb|EDW77478.1| GK18066 [Drosophila willistoni]
Length = 319
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 267 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 316
>gi|194760841|ref|XP_001962641.1| GF15561 [Drosophila ananassae]
gi|190616338|gb|EDV31862.1| GF15561 [Drosophila ananassae]
Length = 315
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 263 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 312
>gi|125987179|ref|XP_001357352.1| GA17632 [Drosophila pseudoobscura pseudoobscura]
gi|195155927|ref|XP_002018852.1| GL25727 [Drosophila persimilis]
gi|54645683|gb|EAL34421.1| GA17632 [Drosophila pseudoobscura pseudoobscura]
gi|194115005|gb|EDW37048.1| GL25727 [Drosophila persimilis]
Length = 313
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 261 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 310
>gi|6755728|ref|NP_035671.1| transcription elongation factor A protein 1 isoform 2 [Mus
musculus]
gi|28380825|sp|P10711.2|TCEA1_MOUSE RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|201939|gb|AAA40419.1| transcription factor S-II [Mus musculus]
gi|13543739|gb|AAH06022.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|38181911|gb|AAH61490.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|52789281|gb|AAH83127.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|74193672|dbj|BAE22787.1| unnamed protein product [Mus musculus]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|395739672|ref|XP_003780672.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 1 [Pongo abelii]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMSKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|410953358|ref|XP_003983338.1| PREDICTED: transcription elongation factor A protein 2 [Felis
catus]
Length = 308
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 241 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 298
Query: 102 KNCKHRW 108
C +RW
Sbjct: 299 NECGNRW 305
>gi|149060978|gb|EDM11588.1| rCG30435 [Rattus norvegicus]
Length = 302
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 235 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 292
Query: 102 KNCKHRW 108
C +RW
Sbjct: 293 NECGNRW 299
>gi|221042038|dbj|BAH12696.1| unnamed protein product [Homo sapiens]
Length = 280
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|195475592|ref|XP_002090068.1| GE19417 [Drosophila yakuba]
gi|194176169|gb|EDW89780.1| GE19417 [Drosophila yakuba]
Length = 313
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 261 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 310
>gi|3347836|gb|AAC64680.1| transcription elongation factor S-II [Xenopus laevis]
Length = 121
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G QT++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 54 RELRNTMTQEAIREHQMAKTGGTQTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLC-- 111
Query: 102 KNCKHRW 108
C +RW
Sbjct: 112 NECGNRW 118
>gi|343887420|ref|NP_001230609.1| transcription elongation factor A protein 1 [Sus scrofa]
Length = 300
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 233 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|195115581|ref|XP_002002335.1| GI17330 [Drosophila mojavensis]
gi|193912910|gb|EDW11777.1| GI17330 [Drosophila mojavensis]
Length = 323
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 271 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 320
>gi|452848304|gb|EME50236.1| hypothetical protein DOTSEDRAFT_122384 [Dothistroma septosporum
NZE10]
Length = 128
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 3 FCPTCGTMLQY-ELPHMD---------RPSRFSCPACPYVCNMESRVKIKRKQPLSKKEI 52
CP+C ML ++P +RF C CPY ++ R ++ L K +
Sbjct: 11 VCPSCSNMLVITQIPSAHCSPEDHDNAEQNRFECRTCPYQMVLDRRYYERKTMKL--KAV 68
Query: 53 QPIFT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ I D+ QTE C C A + ++Q RSADEPM+ FY C C W
Sbjct: 69 EDILGGADSWKNVDQTEAKCANENCDSRMAYFRQVQIRSADEPMTSFYKCV--KCTREWR 126
Query: 110 E 110
E
Sbjct: 127 E 127
>gi|201937|gb|AAA40418.1| transcription factor S-II [Mus musculus]
Length = 266
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 199 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 256
Query: 102 KNCKHRW 108
C +RW
Sbjct: 257 NECGNRW 263
>gi|47215885|emb|CAG12277.1| unnamed protein product [Tetraodon nigroviridis]
Length = 311
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ + G QT++ TC CK Y ++QTRSADEPM+ F C
Sbjct: 244 KEIRKNLTKEAVRDHQMATTGGTQTDLFTCGKCKGKNCTYTQVQTRSADEPMTTFVFC-- 301
Query: 102 KNCKHRW 108
C +RW
Sbjct: 302 NGCGNRW 308
>gi|351725163|ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
gi|255627167|gb|ACU13928.1| unknown [Glycine max]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + F+C C + ++ + + S E +
Sbjct: 4 MKFCRECNNIL---YPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVL- 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ V C C HG+AV+ + R +E M++F++C N NC HRW +
Sbjct: 60 QDVAADPTLPRTKSVRCSQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|198432205|ref|XP_002129790.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide I
[Ciona intestinalis]
Length = 126
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
++FC C ML + ++ +SC C + ++ K E+ I
Sbjct: 14 IKFCQECNNMLYPKEDKQNKILLYSCRNCDFQMEADNLCIYVNKIVHEVDELTQIIADVA 73
Query: 58 QDAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T + +CP C H +AV+ + Q+ +E M ++++C N +C HRW +
Sbjct: 74 QDPTL--PRTRDHSCPKCHHKEAVFFQSQSTRDEEGMRLYFVCTNPHCGHRWTQ 125
>gi|126342511|ref|XP_001362232.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|345306840|ref|XP_001514566.2| PREDICTED: transcription elongation factor A protein 1-like
[Ornithorhynchus anatinus]
Length = 291
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 224 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 281
Query: 102 KNCKHRW 108
C +RW
Sbjct: 282 NECGNRW 288
>gi|365986008|ref|XP_003669836.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
gi|343768605|emb|CCD24593.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
Length = 308
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ L + + Q +F Q A +E T+ TC CK K Y++LQTRSADEP++ F C
Sbjct: 241 KQKLEEIKKQNLFNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC-- 298
Query: 102 KNCKHRW 108
+ C +RW
Sbjct: 299 EACGNRW 305
>gi|349602860|gb|AEP98866.1| Transcription elongation factor A protein 1-like protein, partial
[Equus caballus]
Length = 290
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 223 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 280
Query: 102 KNCKHRW 108
C +RW
Sbjct: 281 NECGNRW 287
>gi|344306362|ref|XP_003421857.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Loxodonta africana]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + +C C + N+ E +V K+ P S
Sbjct: 14 LDFCPDCGSVL--PLPGVQ--DTVTCTRCGFSVNVRDFEGKVVKTSFVFHKLGTALPTSV 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVIDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|313844000|ref|YP_004061663.1| hypothetical protein OlV1_030c [Ostreococcus lucimarinus virus
OlV1]
gi|312599385|gb|ADQ91407.1| hypothetical protein OlV1_030c [Ostreococcus lucimarinus virus
OlV1]
gi|357541718|gb|AET84480.1| hypothetical protein OLOG_00014 [Ostreococcus lucimarinus virus
OlV4]
Length = 178
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 27 PACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
P PY M+ R+ K RK L+ Q + Q+ TC CK K Y++LQ
Sbjct: 107 PDGPYATKMQERMYKEIRKAYLA----QEVKNQEGFF-------TCARCKSKKTTYYQLQ 155
Query: 86 TRSADEPMSIFYMCANKNCKHRW 108
TRSADEPM+ F C NC W
Sbjct: 156 TRSADEPMTTFVSCL--NCDRNW 176
>gi|301788390|ref|XP_002929610.1| PREDICTED: transcription elongation factor A protein 1-like
[Ailuropoda melanoleuca]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|8050580|gb|AAF71710.1|AF220261_1 transcription elongation factor TFIIS [Drosophila virilis]
Length = 324
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 272 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 321
>gi|195385615|ref|XP_002051500.1| TfIIS [Drosophila virilis]
gi|194147957|gb|EDW63655.1| TfIIS [Drosophila virilis]
Length = 324
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 272 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 321
>gi|126342513|ref|XP_001362316.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|409722961|ref|ZP_11270342.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|448722712|ref|ZP_21705243.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|445788849|gb|EMA39550.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--KIKRKQPLSKKEIQPI--- 55
M+FC CG+M+ + M C C +RV +R E Q
Sbjct: 1 MQFCDDCGSMMHADGDEM------VCAGCG------ARVAKDAERAAAFVSTEDQTFDDV 48
Query: 56 --FTQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T+DA EG P E+ C C + A Y QT SADEP + F+ C C HRW
Sbjct: 49 IETTEDAADEGKPTVEIECEECGNDLAWYTIKQTGSADEPPTRFFKCT--ECGHRW 102
>gi|343426415|emb|CBQ69945.1| probable DNA-directed RNA polymerase II 14.5 kDa polypeptide
[Sporisorium reilianum SRZ2]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK-IKRKQPLSKKEIQPIFTQD 59
+ FC C +L E+ H + ++C C Y ESR + R +S + QP D
Sbjct: 4 LHFCAECNNLLYPEVDHTNHVLLYACRNCNY--QQESRESLVYRNDLMSVTKEQPGIV-D 60
Query: 60 AMMEGPQT----EVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+M+ P ++ CP C HG+AV + Q++ M +FY+C
Sbjct: 61 NLMKDPTLRRTHDLNCPNCAHGEAVLFQDQSKRILNRMILFYVC 104
>gi|334325647|ref|XP_003340666.1| PREDICTED: transcription elongation factor A protein 1-like
[Monodelphis domestica]
Length = 301
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|292655539|ref|YP_003535436.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|448555421|ref|ZP_21631461.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
gi|291371717|gb|ADE03944.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|445718166|gb|ELZ69869.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCP-ACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
MEFC CG+++ P + + CP + E + + E+ + D
Sbjct: 1 MEFCDDCGSLM---TP---QDGVWVCPNGHEKARDSEKEKSMVTTEGQESSEVVDMSDVD 54
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
GP T+ CP C H A Y Q RSADE + F+ C C H+W E
Sbjct: 55 NADIGPTTKAICPKCGHDVARYEMKQIRSADESETRFFTCV--ECDHKWRE 103
>gi|281346348|gb|EFB21932.1| hypothetical protein PANDA_019839 [Ailuropoda melanoleuca]
Length = 264
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 198 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 255
Query: 102 KNCKHRW 108
C +RW
Sbjct: 256 NECGNRW 262
>gi|302417110|ref|XP_003006386.1| DNA-directed RNA polymerase II subunit RPB9 [Verticillium
albo-atrum VaMs.102]
gi|261353988|gb|EEY16416.1| DNA-directed RNA polymerase II subunit RPB9 [Verticillium
albo-atrum VaMs.102]
Length = 132
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPS---RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
FC C ML P D S +F+C C Y +S + + E + T
Sbjct: 22 FRFCSECSNML---YPKQDDNSHRLQFTCRTCHYTEEAQSSCVFRNVMNNAAGETAGV-T 77
Query: 58 QDAMME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
QD + P+ ++CP+C H +AV+ + Q RSA+ M +FY+C
Sbjct: 78 QDVGSDPTLPREIISCPSCSHNEAVFFQSQQRSAETGMKLFYVC 121
>gi|118117282|ref|XP_423952.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Gallus
gallus]
gi|326917387|ref|XP_003204981.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Meleagris gallopavo]
gi|314991167|gb|ADT65174.1| DNA directed RNA polymerase II polypeptide I [Meleagris gallopavo]
Length = 125
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF- 56
+ FC C ML P D+ SR ++C C Y +S K E+ I
Sbjct: 14 IRFCQECNNML---YPKEDKESRVLLYACRNCDYQQEADSSCIYVNKITHEVDELTQIIA 70
Query: 57 --TQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 71 DVSQDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|313768224|ref|YP_004061904.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
gi|312598920|gb|ADQ90944.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
Length = 171
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 20 RPSRFSCPACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGK 78
RP CP Y +E+++ K RK+ LS++ I QD + C CK K
Sbjct: 94 RPEEL-CPDGLYAKQIETKIHKEIRKEYLSRE----IKNQDGFFK-------CGRCKSMK 141
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Y++LQTRSADEPM+ F C NC W
Sbjct: 142 TTYYQLQTRSADEPMTTFVSCL--NCDRNW 169
>gi|229094709|ref|NP_001153222.1| transcription elongation factor A protein 1 isoform 3 [Mus
musculus]
Length = 300
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 233 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|448323391|ref|ZP_21512853.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
gi|445599883|gb|ELY53905.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
Length = 107
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI-FTQD 59
M+FC CG+M++ + R C C + + + S+ + + I ++D
Sbjct: 1 MQFCDDCGSMMKAD------GDRMVCSNCGASSERDREAESEFVTTESQTDDEIIESSED 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 ANFEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 103
>gi|355723558|gb|AES07930.1| transcription elongation factor A , 1 [Mustela putorius furo]
Length = 314
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 248 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 305
Query: 102 KNCKHRW 108
C +RW
Sbjct: 306 NECGNRW 312
>gi|261350637|ref|ZP_05976054.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|288861420|gb|EFC93718.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
MEFCP CG +L LP M++ + C C Y ++ VK Q K E P I
Sbjct: 1 MEFCPECGAIL---LP-MNK--KLKCK-CGYEKSLSDEVK---DQYEVKGETNPKAEIIV 50
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T + + P T +TC C K + +QTRSADE + F CA C + W
Sbjct: 51 TDNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCA--KCGNTW 100
>gi|222444789|ref|ZP_03607304.1| hypothetical protein METSMIALI_00402 [Methanobrevibacter smithii
DSM 2375]
gi|222434354|gb|EEE41519.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
MEFCP CG +L LP M++ + C C Y ++ VK Q K E P I
Sbjct: 1 MEFCPECGAIL---LP-MNK--KLKCK-CGYEKSLSDEVK---DQYEVKGETNPKAEVIV 50
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T + + P T +TC C K + +QTRSADE + F CA C + W
Sbjct: 51 TDNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCA--KCGNTW 100
>gi|57530393|ref|NP_001006387.1| transcription elongation factor A protein 1 [Gallus gallus]
gi|53136812|emb|CAG32735.1| hypothetical protein RCJMB04_34f23 [Gallus gallus]
Length = 304
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 237 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 294
Query: 102 KNCKHRW 108
C +RW
Sbjct: 295 NECGNRW 301
>gi|222480409|ref|YP_002566646.1| transcription termination factor Tfs [Halorubrum lacusprofundi ATCC
49239]
gi|222453311|gb|ACM57576.1| transcription termination factor Tfs [Halorubrum lacusprofundi ATCC
49239]
Length = 109
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGATTERDEALAAEFESTTEQTGDEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T ++ C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTAKDIVCDKCGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|224046246|ref|XP_002197689.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Taeniopygia guttata]
Length = 304
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 237 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 294
Query: 102 KNCKHRW 108
C +RW
Sbjct: 295 NECGNRW 301
>gi|91833|pir||JX0167 transcription elongation factor S-II-related protein L121, hepatic
- mouse
Length = 235
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 168 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 225
Query: 102 KNCKHRW 108
C +RW
Sbjct: 226 NECGNRW 232
>gi|440909134|gb|ELR59079.1| Transcription elongation factor A protein 1, partial [Bos grunniens
mutus]
Length = 289
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 223 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 280
Query: 102 KNCKHRW 108
C +RW
Sbjct: 281 NECGNRW 287
>gi|351701808|gb|EHB04727.1| Transcription elongation factor A protein 1, partial
[Heterocephalus glaber]
Length = 285
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 219 KEMRKNLTREAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 276
Query: 102 KNCKHRW 108
C +RW
Sbjct: 277 NECGNRW 283
>gi|297814818|ref|XP_002875292.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
gi|297321130|gb|EFH51551.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 119
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFS-CPACPYVCNMESRVKIKRKQPLSKKEIQ-----PIF 56
FC CGTML + + ++++ CP C N + + ++ ++I+ +F
Sbjct: 11 FCNWCGTML------VLKSTKYAECPLCKTTRNAKEIINKDIAYTVTAEDIRRELGISLF 64
Query: 57 TQDAMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ E P+ + C C+H + VY QTRSADE + +Y C NC HR+ E
Sbjct: 65 GEKTQEEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCP--NCAHRFTE 118
>gi|126302941|ref|XP_001375502.1| PREDICTED: transcription elongation factor A protein 2-like
[Monodelphis domestica]
Length = 359
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 234 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|395841854|ref|XP_003793745.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Otolemur garnettii]
Length = 280
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|449494108|ref|XP_004175278.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 200 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 257
Query: 102 KNCKHRW 108
C +RW
Sbjct: 258 NECGNRW 264
>gi|220592|dbj|BAA00768.1| unnamed protein product [Mus musculus]
Length = 235
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 168 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 225
Query: 102 KNCKHRW 108
C +RW
Sbjct: 226 NECGNRW 232
>gi|68482488|ref|XP_714876.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|68482611|ref|XP_714814.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436409|gb|EAK95772.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436474|gb|EAK95836.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|238883622|gb|EEQ47260.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
albicans WO-1]
Length = 123
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-----------VCNMESRVKIKRKQPLSKKE 51
FC CG +L S C C V S K ++
Sbjct: 9 FCNYCGNLLD----SHSSSSEIKCTVCSAAYPKSKFANLKVVTKSSDDAFPSKLKSARSV 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
++ +D + EG + CP C + + YH LQ RSADE ++FY C NC +R+
Sbjct: 65 VKTSLKKDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCT--NCGYRF 119
>gi|395829391|ref|XP_003787843.1| PREDICTED: transcription elongation factor A protein 2 [Otolemur
garnettii]
Length = 356
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 289 KEIRKAMTKEAIREHQMARTGGTQTDLFTCSKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 346
Query: 102 KNCKHRW 108
C +RW
Sbjct: 347 NECGNRW 353
>gi|148682306|gb|EDL14253.1| transcription elongation factor A (SII) 1 [Mus musculus]
Length = 302
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 235 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 292
Query: 102 KNCKHRW 108
C +RW
Sbjct: 293 NECGNRW 299
>gi|395841852|ref|XP_003793744.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Otolemur garnettii]
Length = 301
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|326917624|ref|XP_003205096.1| PREDICTED: transcription elongation factor A protein 1-like
[Meleagris gallopavo]
Length = 335
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 237 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 294
Query: 102 KNCKHRWNE 110
C +RW +
Sbjct: 295 NECGNRWKQ 303
>gi|195030242|ref|XP_001987977.1| GH10818 [Drosophila grimshawi]
gi|193903977|gb|EDW02844.1| GH10818 [Drosophila grimshawi]
Length = 350
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 298 QLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 347
>gi|354485610|ref|XP_003504976.1| PREDICTED: transcription elongation factor A protein 3-like
[Cricetulus griseus]
Length = 362
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 290 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 347
Query: 102 KNCKHRWNE 110
C +RW E
Sbjct: 348 NECGNRWKE 356
>gi|325957961|ref|YP_004289427.1| transcription termination factor Tfs [Methanobacterium sp. AL-21]
gi|325329393|gb|ADZ08455.1| transcription termination factor Tfs [Methanobacterium sp. AL-21]
Length = 105
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPLSKKEIQPIFTQ 58
MEFCP CG ++ P D F C C + ES + + + + K+ I T
Sbjct: 1 MEFCPKCGAVM---FPKGDI---FECRNCEHTTKATKESMSEYEISEKVESKD-SIIVTS 53
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P V CP C + +A + +QTR ADE + F+ C C W E
Sbjct: 54 DEIQTLPTAVVKCPKCGNKEASWWLIQTRGADESETRFFRCT--KCSLTWRE 103
>gi|91084035|ref|XP_966732.1| PREDICTED: similar to transcription elongation factor S-II
[Tribolium castaneum]
gi|270008004|gb|EFA04452.1| hypothetical protein TcasGA2_TC014756 [Tribolium castaneum]
Length = 294
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI---FTQDAM-------MEGPQTEV-T 70
+ F A P SR+ + + ++ EI+ + FT++A+ ++G +T++
Sbjct: 201 TNFRIGAIPA-----SRLAVMTAEEMANDEIKQLRERFTKEAINDAQLATVQGTKTDLLK 255
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 256 CGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 291
>gi|330796078|ref|XP_003286096.1| hypothetical protein DICPUDRAFT_77009 [Dictyostelium purpureum]
gi|325083915|gb|EGC37355.1| hypothetical protein DICPUDRAFT_77009 [Dictyostelium purpureum]
Length = 310
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 56 FTQDAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
F +A M G E T C CK + Y ++QTRSADEPM+ F C NC +RW
Sbjct: 252 FQTEASMIGTNNEATTDQFQCGKCKQRRCTYFQMQTRSADEPMTTFVRCI--NCGNRW 307
>gi|126179341|ref|YP_001047306.1| transcription termination factor Tfs [Methanoculleus marisnigri
JR1]
gi|125862135|gb|ABN57324.1| DNA-directed RNA polymerase, subunit M [Methanoculleus marisnigri
JR1]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C ++ + + C C Y+ ++ ++K+ +KEI + +D
Sbjct: 1 MMFCPQCKGLM------ISSGGQLKCKKCGYIREIDDSDRLKKTDKRVEKEITIVDEEDK 54
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P + CP C A + Q R+ADE F+ C C W E
Sbjct: 55 IATLPTASIKCPECDCTTAFWWLRQLRAADESEVRFFRCT--ACGKTWRE 102
>gi|448490389|ref|ZP_21607977.1| transcription termination factor Tfs [Halorubrum californiensis DSM
19288]
gi|445693993|gb|ELZ46131.1| transcription termination factor Tfs [Halorubrum californiensis DSM
19288]
Length = 109
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGATTERDEALAAEFESTTEQTGEEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T ++ C C HG+A Y QT +ADEP + F+ C K C HRW
Sbjct: 55 EGANFEGKPTANDIVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGHRW 105
>gi|296226473|ref|XP_002758943.1| PREDICTED: transcription elongation factor A protein 1 [Callithrix
jacchus]
Length = 323
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 256 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 313
Query: 102 KNCKHRW 108
C +RW
Sbjct: 314 NECGNRW 320
>gi|164661661|ref|XP_001731953.1| hypothetical protein MGL_1221 [Malassezia globosa CBS 7966]
gi|159105854|gb|EDP44739.1| hypothetical protein MGL_1221 [Malassezia globosa CBS 7966]
Length = 304
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK K Y+++QTRSADEPM+ F C NC H+W
Sbjct: 266 CGKCKQRKTRYYQMQTRSADEPMTTFVTCV--NCNHKW 301
>gi|327271917|ref|XP_003220733.1| PREDICTED: transcription elongation factor A protein 2-like [Anolis
carolinensis]
Length = 327
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|432094021|gb|ELK25813.1| Transcription elongation factor A protein 2 [Myotis davidii]
Length = 131
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 63 KEIRKAMTKEAIREHQMARTGGTQTDLFTCSKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 120
Query: 102 KNCKHRW 108
C +RW
Sbjct: 121 NECGNRW 127
>gi|254167896|ref|ZP_04874745.1| transcription factor S [Aciduliprofundum boonei T469]
gi|254167927|ref|ZP_04874776.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623187|gb|EDY35753.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623218|gb|EDY35784.1| transcription factor S [Aciduliprofundum boonei T469]
Length = 94
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 20 RPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTE-VTCPACKHGK 78
+ ++ C +C Y ++ + +KE+ I +++ + P E V CP C H
Sbjct: 4 KDGKWVCSSCGYEMPIDKDKSQEIVAEAKEKEMIVISSEEELKALPYDESVICPKCGHAG 63
Query: 79 AVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A + QTR+ADEP + FY+C C HRW E
Sbjct: 64 AHWMLQQTRAADEPETRFYICP--KCGHRWRE 93
>gi|431891774|gb|ELK02308.1| Transcription elongation factor A protein 1 [Pteropus alecto]
Length = 325
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 232 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|148643780|ref|YP_001274293.1| DNA-directed RNA polymerase, subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|148552797|gb|ABQ87925.1| DNA-directed RNA polymerase, subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP----IF 56
MEFCP CG +L LP M++ + C C Y ++ VK Q K E P I
Sbjct: 1 MEFCPECGAIL---LP-MNK--KLKCK-CGYERSLSDEVK---DQYEVKGETNPKAEVIV 50
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T + + P T +TC C K + +QTRSADE + F CA C + W
Sbjct: 51 TDNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCA--KCGNTW 100
>gi|348550748|ref|XP_003461193.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cavia
porcellus]
Length = 123
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---- 56
++FCP CG++L P +C C + N+ K + ++ F
Sbjct: 14 LDFCPECGSVL----PLPGAQDTLACTRCGFPVNVRDLEGKVVKTSVMFHKLGTAFPVRG 69
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +GP + C C H YH Q RSADE ++FY C NCK + E
Sbjct: 70 EEGHEFQGPVVDRRCSRCGHEGMTYHTRQMRSADEGQTVFYTCT--NCKFQEKE 121
>gi|354488913|ref|XP_003506610.1| PREDICTED: transcription elongation factor A protein 1-like
[Cricetulus griseus]
Length = 318
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 251 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 308
Query: 102 KNCKHRW 108
C +RW
Sbjct: 309 NECGNRW 315
>gi|67968616|dbj|BAE00667.1| unnamed protein product [Macaca fascicularis]
Length = 117
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 50 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 107
Query: 102 KNCKHRW 108
C +RW
Sbjct: 108 NECGNRW 114
>gi|448314876|ref|ZP_21504531.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
gi|445612683|gb|ELY66402.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
Length = 107
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI-FTQD 59
M+FC CG+M++ + R C C + + + S+ + I ++D
Sbjct: 1 MQFCDDCGSMMKAD------GDRMVCSNCGASSERDREAESEFVTTESQTDDDVIESSED 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 ANFEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 103
>gi|301780656|ref|XP_002925744.1| PREDICTED: transcription elongation factor A protein 2-like
[Ailuropoda melanoleuca]
Length = 300
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRRKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|110668318|ref|YP_658129.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi DSM
16790]
gi|109626065|emb|CAJ52516.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
Length = 107
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV-----CNMESRVKIKRKQPLSKKEIQPI 55
M+FC CG+M++ + ++C C + + + +Q ++ I
Sbjct: 1 MKFCDECGSMMKK------QDDIWTCSDCGAEELADEADSATMTSTESQQESGAVDVSDI 54
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D GP T V CP C + A Y Q R+ADE + F+ C C H+W E
Sbjct: 55 DDADI---GPTTTVICPECGNDTARYEMKQIRAADESETRFFTCT--ECNHKWRE 104
>gi|431907041|gb|ELK11159.1| DNA-directed RNA polymerase I subunit RPA12 [Pteropus alecto]
Length = 204
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L P +C C + N+ E +V K+ P+S
Sbjct: 42 LDFCPDCGSVL----PLPGTQDTVTCTRCGFSINVRDFEGKVVKTSFVFHKLGTAMPMSM 97
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKN 103
E P F +GP + C C H YH Q RSADE ++FY C N N
Sbjct: 98 -EGGPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCN 144
>gi|229094714|ref|NP_001153223.1| transcription elongation factor A protein 1 isoform 1 [Mus
musculus]
Length = 312
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 245 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 302
Query: 102 KNCKHRW 108
C +RW
Sbjct: 303 NECGNRW 309
>gi|195579326|ref|XP_002079513.1| GD21972 [Drosophila simulans]
gi|194191522|gb|EDX05098.1| GD21972 [Drosophila simulans]
Length = 146
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 94 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 143
>gi|296241788|ref|YP_003649275.1| DNA-directed RNA polymerase subunit M [Thermosphaera aggregans DSM
11486]
gi|296094372|gb|ADG90323.1| DNA-directed RNA polymerase, subunit M [Thermosphaera aggregans DSM
11486]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESR----VKIKRKQPLSKKEIQPIF 56
+ FCP CG +++ + C C Y R ++ + S +E +
Sbjct: 2 VRFCPKCGGLMK--PVKSSNNTELVCVKCGYRMRAGERELEKYRVSSRIEHSTREKTIVV 59
Query: 57 TQDAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P + EVTCP C + +A Y +QTR+ADEP + FY C C H W E
Sbjct: 60 GDVDTSKLPVSKEVTCPKCGNHEAYYWMIQTRAADEPPTRFYKCV--KCGHTWRE 112
>gi|18414627|ref|NP_567490.1| RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]
gi|297800522|ref|XP_002868145.1| hypothetical protein ARALYDRAFT_493259 [Arabidopsis lyrata subsp.
lyrata]
gi|21537166|gb|AAM61507.1| RNA Polymerase II subunit 14.5 kD, putative [Arabidopsis thaliana]
gi|114050701|gb|ABI49500.1| At4g16265 [Arabidopsis thaliana]
gi|297313981|gb|EFH44404.1| hypothetical protein ARALYDRAFT_493259 [Arabidopsis lyrata subsp.
lyrata]
gi|332658323|gb|AEE83723.1| RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P D+ ++C C + ++ + + S E I +
Sbjct: 4 MKFCRECNNIL---YPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60
Query: 58 QDAMM-EGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A P+T+ V C C+HG+AV+ + R +E M++F++C N NC HRW E
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQATAR-GEEGMTLFFVCCNPNCSHRWRE 114
>gi|413948071|gb|AFW80720.1| hypothetical protein ZEAMMB73_218313 [Zea mays]
Length = 500
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 65 PQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ V C C HG+AV+ + TR +E M++F++C + +C HRW E
Sbjct: 455 PRTKTVRCNLCGHGEAVFFQAATR-GEEGMTLFFVCCSPDCGHRWRE 500
>gi|426236089|ref|XP_004012007.1| PREDICTED: transcription elongation factor A protein 1 [Ovis aries]
Length = 313
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 246 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 303
Query: 102 KNCKHRW 108
C +RW
Sbjct: 304 NECGNRW 310
>gi|452988365|gb|EME88120.1| hypothetical protein MYCFIDRAFT_25627, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 117
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 4 CPTCGTML---QYELPH--------MDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEI 52
CP+C ML Q H M + +RF C CPY + R ++ L K +
Sbjct: 1 CPSCSNMLIISQVPAAHCAPGDEQNMGK-NRFECRTCPYQMVLGRRYYERKNMNL--KAV 57
Query: 53 QPIFT-QDAMMEGPQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
I D+ +TE CP C+ +A + ++Q RSADEPM+ FY C C W
Sbjct: 58 DDILGGADSWKNVDKTEAKCPNEQCESREAYFRQVQIRSADEPMTRFYRCT--ECTREWR 115
Query: 110 E 110
E
Sbjct: 116 E 116
>gi|348570796|ref|XP_003471183.1| PREDICTED: zinc finger protein 436-like [Cavia porcellus]
Length = 856
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 286 RELRNAMTQEAIREHQMAKTGGTTTDLLQCSKCKKKNCTYNQMQTRSADEPMTTFVLC-- 343
Query: 102 KNCKHRW 108
C HRW
Sbjct: 344 NECGHRW 350
>gi|403308945|ref|XP_003944898.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FC CG++L P +CP C + N+ E +V ++ P+S
Sbjct: 14 LDFCSECGSVL----PLPGAQDTVTCPRCGFNINVRDFEGKVVKTSVVFHQLGTAMPVSV 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>gi|389860780|ref|YP_006363020.1| transcription factor S [Thermogladius cellulolyticus 1633]
gi|388525684|gb|AFK50882.1| transcription factor S [Thermogladius cellulolyticus 1633]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 26 CPACPYVCNMESR----VKIKRKQPLSKKEIQPIFTQDAMMEGPQT-EVTCPACKHGKAV 80
C C Y R +K K S+KE + P T EVTCP C + +A
Sbjct: 14 CSRCGYKVKATERDLALYGLKVKIEHSEKEKTLVLKDSGEANLPVTREVTCPKCGYHEAY 73
Query: 81 YHELQTRSADEPMSIFYMCANKNCKHRWNE 110
Y +QTR+ADEP + FY C + C H W E
Sbjct: 74 YWFIQTRAADEPPTRFYKC--RRCGHVWRE 101
>gi|50287137|ref|XP_445998.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525305|emb|CAG58922.1| unnamed protein product [Candida glabrata]
Length = 128
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQP---------LSKKE 51
FC CG +L ++ + C C Y + + +K+ L +
Sbjct: 9 FCDDCGNLLDNPEDKINNSNVIECSQCQAEYAKSQFTNLKVVTSTSEDAFPSSLRLKRSV 68
Query: 52 IQPIFTQDAMME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++ +D + + G + CP C H + Y LQ RSADE ++FY C N K+R N
Sbjct: 69 VKTHLKRDELKDDGATIKEKCPKCGHDEMRYQTLQLRSADEGATVFYTCIKCNYKYRTN 127
>gi|410987185|ref|XP_003999887.1| PREDICTED: transcription elongation factor A protein 1 [Felis
catus]
Length = 353
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 286 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 343
Query: 102 KNCKHRW 108
C +RW
Sbjct: 344 NECGNRW 350
>gi|301111450|ref|XP_002904804.1| transcription elongation factor, putative [Phytophthora infestans
T30-4]
gi|262095134|gb|EEY53186.1| transcription elongation factor, putative [Phytophthora infestans
T30-4]
Length = 307
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
EG + TC CK K + QTRSADEPM++F MC NC +RW
Sbjct: 262 EGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMC--HNCGNRW 305
>gi|393220677|gb|EJD06163.1| transcription elongation factor [Fomitiporia mediterranea MF3/22]
Length = 296
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 33 CNMESRVKIKRKQPLSKKEIQP-IFTQDAMMEGPQTEVT---CPACKHGKAVYHELQTRS 88
C M S+ ++ + K IQ F + E Q E C CK K Y + QTRS
Sbjct: 216 CRMSSQEMASEERKAADKAIQEENFYKSLGAEEQQAETDAFQCGKCKQRKTRYRQAQTRS 275
Query: 89 ADEPMSIFYMCANKNCKHRW 108
ADEPM+ F C NC HRW
Sbjct: 276 ADEPMTTFVTCV--NCNHRW 293
>gi|307166898|gb|EFN60802.1| DNA-directed RNA polymerase I subunit RPA12 [Camponotus floridanus]
Length = 117
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 3 FCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ--- 58
FCP CG++L P +D C AC N E+ +K + +
Sbjct: 7 FCPDCGSIL----PLLDESKDTVVCFACKREWNAETFGDMKMTHTIHFNSKNTYISAREA 62
Query: 59 ---DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
D +GP E CP CK+ K Y LQ RSADE ++FY C
Sbjct: 63 DDSDDDADGPIVERACPQCKNDKMSYATLQLRSADEGQTVFYTCT 107
>gi|435849025|ref|YP_007311275.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
gi|433675293|gb|AGB39485.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
Length = 107
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI-FTQD 59
M+FC CG+M++ + R C C + + + S+ + + I ++D
Sbjct: 1 MQFCDDCGSMMKAD------GDRMVCSNCGASNERDREAESEFVTTESQTDNEVIESSED 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 ANFEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 103
>gi|348685495|gb|EGZ25310.1| hypothetical protein PHYSODRAFT_487107 [Phytophthora sojae]
Length = 125
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC---NMESRVKIKRKQPLSKKEIQPIFTQD 59
FCP CGT+L H D S C AC Y C ++ S + R + K + + +
Sbjct: 17 FCPHCGTILD----HPDTNS-IVCSACEYRCRYQDLPSLTVVTRSE--DKPAPKWLDAEK 69
Query: 60 AMME--GPQ---TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
M E GP E CP C + + Y+ LQ RSADE ++FY C K C H+++
Sbjct: 70 VMSEVTGPARATVEEPCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFS 122
>gi|221041960|dbj|BAH12657.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 50 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 107
Query: 102 KNCKHRW 108
C +RW
Sbjct: 108 NECGNRW 114
>gi|112982786|ref|NP_001037548.1| transcription-associated zinc ribbon protein [Bombyx mori]
gi|89521458|gb|ABD76573.1| transcription-associated zinc ribbon protein [Bombyx mori]
Length = 120
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM 62
FC CG++L P + C C ++ K+K + + I I ++ +
Sbjct: 13 FCARCGSIL----PLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENILH 68
Query: 63 ----EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
EGP E C C + + Y LQ RSADE ++FY C CK++ E
Sbjct: 69 TDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCI--KCKYKETE 118
>gi|77556133|gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125537020|gb|EAY83508.1| hypothetical protein OsI_38722 [Oryza sativa Indica Group]
gi|125579719|gb|EAZ20865.1| hypothetical protein OsJ_36504 [Oryza sativa Japonica Group]
Length = 114
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + ++C C + ++ + S E +
Sbjct: 4 MKFCRECNNIL---YPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVL- 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ V C C HG+AV+ + R +E M++F++C N +C HRW E
Sbjct: 60 QDVAGDPTLPRTKAVRCAVCGHGEAVFFQATAR-GEEGMTLFFVCCNPSCGHRWRE 114
>gi|348542186|ref|XP_003458567.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Oreochromis niloticus]
Length = 117
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME--SRVKIKRKQPLSKKEIQPIFT--Q 58
FCP CG +L LP + P CP C + + S +I+ + E P+ +
Sbjct: 10 FCPECGNVLP--LPGI--PDVVCCPGCSFRIPVSEFSGQEIRSAVVFNPVEQAPVSQDEE 65
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D+ M+GP + C C +YH Q RSADE ++F+ C +C+++ E
Sbjct: 66 DSEMKGPVIDRRCSHCNKEGMIYHTRQMRSADEGQTVFFTCI--HCRYQEKE 115
>gi|299115312|emb|CBN74128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 237
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FC C ++ + DR +SC C Y + +S + R ++ + Q
Sbjct: 124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTD 183
Query: 61 MMEGPQTE----VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+++ P + C C + +AV+ + + + +S+ ++C N+ C H+W
Sbjct: 184 VVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 235
>gi|353234293|emb|CCA66319.1| related to transcription elongation factor TFIIS [Piriformospora
indica DSM 11827]
Length = 280
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK K +Y + QTRSADEPM+ F C NC +RW
Sbjct: 242 CGKCKQRKTIYRQAQTRSADEPMTTFVTCV--NCGNRW 277
>gi|71749298|ref|XP_827988.1| RNA polymerase III C11 subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833372|gb|EAN78876.1| RNA polymerase III C11 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261333746|emb|CBH16741.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-SRFSCPACPYVCNMESR--------------VKIKRKQ 45
M FCP CGT+L E + P +RFSC +C YV ++SR V +
Sbjct: 1 MFFCPFCGTLLLIEPAY---PCNRFSCSSCRYVVPIQSRRPLTINHSFLKYNKVVDDDDE 57
Query: 46 PLSKKEIQPIFTQDAMMEGPQT-EVTC----PACKHGKAVYHELQTRSADEPMSIFYMCA 100
S ++ ++ ++G Q V C C +A Y ++Q RSADEP + F+ C
Sbjct: 58 KGSSNTVKRGVKEEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCL 117
Query: 101 NKNCKHRWNE 110
C +W +
Sbjct: 118 --KCGFQWKQ 125
>gi|344272860|ref|XP_003408247.1| PREDICTED: transcription elongation factor A protein 1-like
[Loxodonta africana]
Length = 380
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 248 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 305
Query: 102 KNCKHRW 108
C +RW
Sbjct: 306 NECGNRW 312
>gi|320100252|ref|YP_004175844.1| DNA-directed RNA polymerase subunit M [Desulfurococcus mucosus DSM
2162]
gi|319752604|gb|ADV64362.1| DNA-directed RNA polymerase, subunit M [Desulfurococcus mucosus DSM
2162]
Length = 114
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES----RVKIKRKQPLSKKEIQPIFTQ 58
CP CG +++ + +D C C Y E+ K+ + E +
Sbjct: 4 LCPKCGGLMRPQ--RIDGKPYLVCTRCGYRLEAEASGVREFKVSTRIEHRPDEKTLVLKS 61
Query: 59 DAMMEGPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T EVTCP C +A Y LQTR+ADEP + F+ C C H W E
Sbjct: 62 ENEANLPVTREVTCPKCGWHEAYYWMLQTRAADEPPTRFFKCT--RCGHTWRE 112
>gi|159474128|ref|XP_001695181.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276115|gb|EDP01889.1| predicted protein [Chlamydomonas reinhardtii]
Length = 348
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKN 103
K+ L+K+ ++ T A + Q C CK K Y++LQTRSADEPM+ F C N
Sbjct: 287 KEWLAKEAVRGATTNAATTDMFQ----CGRCKQRKCTYYQLQTRSADEPMTTFVTCT--N 340
Query: 104 CKHRW 108
C RW
Sbjct: 341 CGQRW 345
>gi|3347834|gb|AAC64679.1| transcription elongation factor S-II [Xenopus laevis]
Length = 289
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G QT++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 222 RELRNTMTQEAIREHQMAKTGGTQTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLC-- 279
Query: 102 KNCKHRW 108
C +RW
Sbjct: 280 NECGNRW 286
>gi|357449003|ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula]
gi|217075262|gb|ACJ85991.1| unknown [Medicago truncatula]
gi|355483825|gb|AES65028.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
gi|388497558|gb|AFK36845.1| unknown [Medicago truncatula]
Length = 114
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES-------RVKIKRKQPLSKKEIQ 53
M+FC C +L P DR + AC + E+ R +I + +Q
Sbjct: 4 MKFCRECNNIL---YPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
Query: 54 PIFTQDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+T+ V C C HG+AV+ + R +E M++F++C N NC HRW +
Sbjct: 61 DVAADPTL---PRTKAVRCVQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|53734145|gb|AAH83411.1| Zgc:103515 [Danio rerio]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT--- 57
+ FC C ML + +R ++C C Y ++ K E+ I
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIHVNKITHEVDELTQIIADVA 74
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE CP C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 75 QDPTL--PRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gi|45387785|ref|NP_991246.1| transcription elongation factor A protein 3 [Danio rerio]
gi|41107560|gb|AAH65444.1| Transcription elongation factor A (SII), 3 [Danio rerio]
Length = 409
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+++ + TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 342 KQLRNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLC-- 399
Query: 102 KNCKHRW 108
C +RW
Sbjct: 400 NECGNRW 406
>gi|448575682|ref|ZP_21641962.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|448590957|ref|ZP_21650722.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
gi|445730623|gb|ELZ82211.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|445734453|gb|ELZ86012.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
Length = 106
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCP-ACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD 59
MEFC CG+++ P + + CP + E + + E+ + D
Sbjct: 1 MEFCDDCGSLM---TP---QDGVWVCPNGHEKARDSEKEKTMVTTEGQESSEVVDMSDVD 54
Query: 60 AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
GP T CP C H A Y Q RSADE + F+ C C H+W E
Sbjct: 55 NADIGPTTTAICPECGHDVARYEMKQIRSADESETRFFTCV--ECDHKWRE 103
>gi|395511158|ref|XP_003759828.1| PREDICTED: transcription elongation factor A protein 1 [Sarcophilus
harrisii]
Length = 349
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 282 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 339
Query: 102 KNCKHRW 108
C +RW
Sbjct: 340 NECGNRW 346
>gi|348685682|gb|EGZ25497.1| transcription elongation factor [Phytophthora sojae]
Length = 305
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
EG + TC CK K + QTRSADEPM++F MC NC +RW
Sbjct: 260 EGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMC--HNCGNRW 303
>gi|225710958|gb|ACO11325.1| Transcription elongation factor S-II [Caligus rogercresseyi]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 57 TQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 246 SQLAHIQGTKTDLLKCGKCKQSNCTYNQIQTRSADEPMATFVLC--NECGNRW 296
>gi|345793232|ref|XP_535071.3| PREDICTED: transcription elongation factor A protein 1 [Canis lupus
familiaris]
Length = 399
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|308808340|ref|XP_003081480.1| putative elongation factor (ISS) [Ostreococcus tauri]
gi|116059943|emb|CAL56002.1| putative elongation factor (ISS) [Ostreococcus tauri]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 56 FTQDAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
F + + G Q E + C CK K Y++LQTRSADEPM+ F C NC +RW
Sbjct: 68 FAEWEAVRGQQQEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCV--NCGNRW 123
>gi|50310967|ref|XP_455506.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644642|emb|CAG98214.1| KLLA0F09361p [Kluyveromyces lactis]
Length = 292
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+ + + E Q +F Q A +E T+ C CK K Y++LQTRSADEP++ F C
Sbjct: 225 KKKIEEIEKQNLFNAQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTC-- 282
Query: 102 KNCKHRW 108
+NC +RW
Sbjct: 283 ENCGNRW 289
>gi|440494268|gb|ELQ76667.1| RNA polymerase III subunit C11, partial [Trachipleistophora
hominis]
Length = 58
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
++ +D M + E C C + A ++E+QTRSADEPM+IFY C
Sbjct: 11 VWKEDVMRSMAKCEKICEKCGYNTASFYEMQTRSADEPMTIFYQC 55
>gi|115496660|ref|NP_001068797.1| transcription elongation factor A protein 2 [Bos taurus]
gi|122144556|sp|Q148K0.1|TCEA2_BOVIN RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Transcription elongation factor S-II protein 2
gi|109939943|gb|AAI18233.1| Transcription elongation factor A (SII), 2 [Bos taurus]
Length = 300
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|367015144|ref|XP_003682071.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
gi|359749733|emb|CCE92860.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
Length = 125
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQP--------LSKKEI 52
FC CG +L + P+ S+ +C C Y + S +K+ SKK +
Sbjct: 9 FCLDCGNLL--DNPNTVSGSQIACDQCQATYPKSQFSNLKVLTTTAEDAFPSALRSKKSV 66
Query: 53 -QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ +D + EG CP C + + YH LQ RSADE ++FY C K R N
Sbjct: 67 VKTSLKKDELEEGATIREKCPKCGNEEMHYHTLQLRSADEGATVFYTCTQCGYKFRTN 124
>gi|345325225|ref|XP_001507346.2| PREDICTED: hypothetical protein LOC100075902 [Ornithorhynchus
anatinus]
Length = 604
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ F +C
Sbjct: 298 KEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVC-- 355
Query: 102 KNCKHRW 108
C +RW
Sbjct: 356 NECGNRW 362
>gi|432094693|gb|ELK26173.1| Transcription elongation factor A protein 1 [Myotis davidii]
Length = 376
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 296 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 353
Query: 102 KNCKHRW 108
C +RW
Sbjct: 354 NECGNRW 360
>gi|344253671|gb|EGW09775.1| Transcription elongation factor A protein 1 [Cricetulus griseus]
Length = 278
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 211 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 268
Query: 102 KNCKHRW 108
C +RW
Sbjct: 269 NECGNRW 275
>gi|242023352|ref|XP_002432098.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212517472|gb|EEB19360.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 132
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN----MESRVKIKRKQPLSKKEIQPIF 56
+ FCP C ML P D+ S A N +S K E+ I
Sbjct: 20 IRFCPECNNML---YPKEDKESHILLYAVSLHLNKYLSADSNCIYVNKIMHEIDELTHIV 76
Query: 57 TQDAMMEGP----QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ ++ P E CP C + AV+ + QTR A+E M ++Y+C N++C HRW E
Sbjct: 77 SD--VISDPTLPRSEEHPCPKCNNRLAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 132
>gi|429217535|ref|YP_007175525.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
gi|429134064|gb|AFZ71076.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
Length = 124
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC-----NMESRVKIKRKQPLSKKEIQPI 55
M FCP CG++++ + H+ CP C Y ++ + +K+K K + K+ +
Sbjct: 9 MMFCPKCGSLMKPK--HIGGKLYLVCPKCGYKTEVDQNSLSNTLKVKEKIQHTPKDKTIV 66
Query: 56 FTQDA---MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A + + + CP C + + + +QTR+ADEP + FY C C + W E
Sbjct: 67 VDSQAPPPTAQIVKGSIRCPRCGNDELLAWMIQTRAADEPPTRFYRCT--KCGYTWRE 122
>gi|348554119|ref|XP_003462873.1| PREDICTED: transcription elongation factor A protein 2-like [Cavia
porcellus]
Length = 325
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>gi|318056068|ref|NP_001188185.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
gi|308323879|gb|ADO29075.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
Length = 133
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME--SRVKIKRKQPLS--KKEIQPIF 56
+ FCP CG +L P + +CP C + ++ S IK + +K +
Sbjct: 8 INFCPECGNIL----PIPELHDFITCPRCAFSIPVQEFSGYMIKSSVVFNSLEKSSSAVE 63
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
++D+ ++GP + C C VYH Q RSADE ++F+ C
Sbjct: 64 SEDSELKGPIIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTC 106
>gi|260797171|ref|XP_002593577.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
gi|229278803|gb|EEN49588.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
Length = 588
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
+Q L+K+ I+ Q A G QT++ C CK Y+++QTRSADEPM+ F C
Sbjct: 188 RQSLTKEAIRD--AQMATTGGTQTDLLKCGKCKKRNVTYNQVQTRSADEPMTTFCYC--N 243
Query: 103 NCKHRWNE 110
C +RW E
Sbjct: 244 ECGNRWKE 251
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
+Q L+K+ I+ Q A G QT++ C CK Y+++QTRSADEPM+ F C
Sbjct: 437 RQSLTKEAIRD--AQMATTGGTQTDLLKCGKCKKRNVTYNQVQTRSADEPMTTFCYC--N 492
Query: 103 NCKHRW 108
C +RW
Sbjct: 493 ECGNRW 498
>gi|448730238|ref|ZP_21712546.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
gi|445793406|gb|EMA43978.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
Length = 106
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FC CG+M+ + M C C + S+ I T +D
Sbjct: 1 MQFCDECGSMMHADGDEM------VCADCGERVPKDGDRAAAFVSTESQTTDDVIETSED 54
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG P EV C C + +A Y QT SADEP + F+ C C HRW
Sbjct: 55 AADEGKPTAEVACDECGNDRAWYTIKQTGSADEPPTRFFKCT--ECGHRW 102
>gi|338728315|ref|XP_001489456.3| PREDICTED: transcription elongation factor A protein 1-like [Equus
caballus]
Length = 409
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 299 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 356
Query: 102 KNCKHRWNE 110
C +RW +
Sbjct: 357 NECGNRWKD 365
>gi|383873107|ref|NP_001244428.1| transcription elongation factor A protein 2 [Macaca mulatta]
gi|380815990|gb|AFE79869.1| transcription elongation factor A protein 2 isoform a [Macaca
mulatta]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|125773775|ref|XP_001358146.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|195143603|ref|XP_002012787.1| GL23744 [Drosophila persimilis]
gi|54637881|gb|EAL27283.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|194101730|gb|EDW23773.1| GL23744 [Drosophila persimilis]
Length = 121
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQPLSKKEIQPIF---- 56
FCP+CG++L P + C C ++ ++ K + + + +F
Sbjct: 10 FCPSCGSIL----PPLQVKGNVICHNCHQEFLPDVYGGEKTEYSIQFNTYDPSKVFNRTK 65
Query: 57 --TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ + +GP E CP C H K Y LQ RSADE ++F+ C CK++ +E
Sbjct: 66 RESESSEADGPVVERKCPKCGHDKMSYATLQLRSADEGQTVFFTCL--KCKYKESE 119
>gi|402881938|ref|XP_003904513.1| PREDICTED: transcription elongation factor A protein 2 [Papio
anubis]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|354500641|ref|XP_003512407.1| PREDICTED: transcription elongation factor A protein 2-like
[Cricetulus griseus]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ + +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCSKCKKKNCTYTQVQTRSSDEPMTTYVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|297707612|ref|XP_002830595.1| PREDICTED: transcription elongation factor A protein 2 isoform 1
[Pongo abelii]
Length = 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|426392555|ref|XP_004062615.1| PREDICTED: transcription elongation factor A protein 2 [Gorilla
gorilla gorilla]
Length = 299
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|194740930|ref|XP_001952942.1| GF17465 [Drosophila ananassae]
gi|190626001|gb|EDV41525.1| GF17465 [Drosophila ananassae]
Length = 121
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQPLSKKEIQPIF---- 56
FCP+CG++L P + C C ++ ++ S K + + +F
Sbjct: 10 FCPSCGSIL----PTLQVKGNVMCYNCKKEFLPDVYSGEKTDFIIQFNTYDPSKVFNRTK 65
Query: 57 --TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ + +GP E CP C H K Y LQ RSADE ++F+ C CK + +E
Sbjct: 66 RESESSEADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESE 119
>gi|126303929|ref|XP_001375747.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE+ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMHKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>gi|260942901|ref|XP_002615749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851039|gb|EEQ40503.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 123
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQP---------LSKKE 51
FC CG +L +P+ C C Y + + +K+ K L +
Sbjct: 9 FCNDCGNLLD---SVTAKPT-LDCGVCHRSYQSSQFANLKVVTKSSEDAFPSSLKLKRSV 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
++ D + EG + CP C + + YH LQ RSADE ++FY C C +R+
Sbjct: 65 VKTSLKNDELEEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCT--GCGYRF 119
>gi|327266376|ref|XP_003217982.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Anolis carolinensis]
Length = 120
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK--IKRKQPLSKKEIQPIFTQ 58
++FCP CGT+L LP + + +C C + +++ K I ++ + +
Sbjct: 12 LDFCPECGTVL--PLPGL--QDKVACRCCSFFIDVQEFEKRIIDTSVTFNRTDSTNLEVD 67
Query: 59 DA-MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++GP + CP C YH Q RSADE ++FY C +CK + E
Sbjct: 68 GGKAVKGPLIDRKCPQCGQEGMTYHTRQMRSADEGQTVFYTCI--HCKFQEKE 118
>gi|344254454|gb|EGW10558.1| Transcription elongation factor A protein 2 [Cricetulus griseus]
Length = 255
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC CK Y ++QTRS+DEPM+ + +C
Sbjct: 188 KEIRKAMTKEAIREHQMARTGGTQTDLFTCSKCKKKNCTYTQVQTRSSDEPMTTYVVC-- 245
Query: 102 KNCKHRW 108
C +RW
Sbjct: 246 NECGNRW 252
>gi|237841743|ref|XP_002370169.1| transcription elongation factor TFIIS, putative [Toxoplasma gondii
ME49]
gi|95007190|emb|CAJ20411.1| transcription elongation factor s-II, putative [Toxoplasma gondii
RH]
gi|211967833|gb|EEB03029.1| transcription elongation factor TFIIS, putative [Toxoplasma gondii
ME49]
gi|221482635|gb|EEE20973.1| transcription elongation factor, putative [Toxoplasma gondii GT1]
gi|221503171|gb|EEE28877.1| transcription elongation factor, putative [Toxoplasma gondii VEG]
Length = 418
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 42 KRKQPLSKKE----IQPIFTQDAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSI 95
KR + L KKE Q + +MEG + C C+ K VY ++QTRS+DEPM+
Sbjct: 346 KRMRELQKKESMEACQSDWEMKKLMEGASEGGQFPCFKCRTTKTVYFQMQTRSSDEPMTT 405
Query: 96 FYMCANKNCKHRW 108
F C C +RW
Sbjct: 406 FVTCL--ECGNRW 416
>gi|383624797|ref|ZP_09949203.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|448697216|ref|ZP_21698294.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|445781595|gb|EMA32447.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
Length = 109
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI-FTQD 59
M+FC CG+M++ + M + C +S ++ + S+ E I ++D
Sbjct: 1 MQFCDECGSMMKADGDRM----VCTNEDCGASSERDSDLEDEFVTTESQSEDDVIESSED 56
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C + +A Y QT SADEP + F+ C C HRW
Sbjct: 57 ANFEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 105
>gi|194904228|ref|XP_001981026.1| GG22692 [Drosophila erecta]
gi|194916194|ref|XP_001982968.1| GG11044 [Drosophila erecta]
gi|190647834|gb|EDV45162.1| GG11044 [Drosophila erecta]
gi|190652729|gb|EDV49984.1| GG22692 [Drosophila erecta]
Length = 120
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQPLSKKEIQPIFTQ-- 58
FCP+CG++L P + C C + ++ S K + + + +F++
Sbjct: 10 FCPSCGSIL----PELQVKGNVICCNCRQEFQPDVYSGEKSEFTIHFNTYDPSKVFSRTK 65
Query: 59 ---DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A +GP E CP C H K Y LQ RSADE ++F+ C CK + +E
Sbjct: 66 RESEADADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESE 118
>gi|4507385|ref|NP_003186.1| transcription elongation factor A protein 2 isoform a [Homo
sapiens]
gi|114683103|ref|XP_001153063.1| PREDICTED: transcription elongation factor A protein 2 isoform 10
[Pan troglodytes]
gi|397477238|ref|XP_003809984.1| PREDICTED: transcription elongation factor A protein 2 [Pan
paniscus]
gi|28380177|sp|Q15560.1|TCEA2_HUMAN RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Testis-specific S-II; AltName: Full=Transcription
elongation factor S-II protein 2; AltName:
Full=Transcription elongation factor TFIIS.l
gi|1217591|dbj|BAA09089.1| transcription elongation factor S-II, hS-II-T1 [Homo sapiens]
gi|17511903|gb|AAH18896.1| Transcription elongation factor A (SII), 2 [Homo sapiens]
gi|48145997|emb|CAG33221.1| TCEA2 [Homo sapiens]
gi|119595574|gb|EAW75168.1| transcription elongation factor A (SII), 2, isoform CRA_a [Homo
sapiens]
gi|167773997|gb|ABZ92433.1| transcription elongation factor A (SII), 2 [synthetic construct]
gi|307684308|dbj|BAJ20194.1| transcription elongation factor A (SII), 2 [synthetic construct]
gi|410218238|gb|JAA06338.1| transcription elongation factor A (SII), 2 [Pan troglodytes]
gi|410267706|gb|JAA21819.1| transcription elongation factor A (SII), 2 [Pan troglodytes]
gi|410287524|gb|JAA22362.1| transcription elongation factor A (SII), 2 [Pan troglodytes]
gi|410331783|gb|JAA34838.1| transcription elongation factor A (SII), 2 [Pan troglodytes]
gi|1586557|prf||2204253A transcription elongation factor S-II
Length = 299
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|390462834|ref|XP_003732920.1| PREDICTED: transcription elongation factor A protein 2 [Callithrix
jacchus]
Length = 324
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|356572419|ref|XP_003554366.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA12-like [Glycine max]
Length = 116
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY------VCNMESRVKIKRKQPLSKKEIQPIF 56
FC CGT+L +P + CP C VC+ E I + + K+ I
Sbjct: 10 FCHLCGTLLT--VPSTEYAQ---CPLCKTHRDMQDVCDKEISFTI-HDEDIRKELGMEII 63
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +ME C C HG+A Y+ Q RSADE + FY C C H+ E
Sbjct: 64 EEHTVMEYSXVCKKCGKCGHGEATYYTRQMRSADEGQTTFYTCT--GCGHQSQE 115
>gi|126303931|ref|XP_001375763.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE+ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 213 KEMHKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 270
Query: 102 KNCKHRW 108
C +RW
Sbjct: 271 NECGNRW 277
>gi|448733443|ref|ZP_21715688.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
gi|445803177|gb|EMA53477.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
Length = 106
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FC CG+M+ + M C C + S+ I T +D
Sbjct: 1 MQFCDECGSMMHADGDEM------VCADCGERVPKDGERAAAFVSTESQTTDDVIETSED 54
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG P EV C C + +A Y QT SADEP + F+ C C HRW
Sbjct: 55 AADEGKPTAEVECDDCGNDRAWYTIKQTGSADEPPTRFFKCT--ECGHRW 102
>gi|47200172|emb|CAF87330.1| unnamed protein product [Tetraodon nigroviridis]
Length = 255
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 20 RPSRFSCPACPY-VCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-------GPQTEVT- 70
RP R P P+ VC V K K+++ TQ+A+ E G T++
Sbjct: 166 RPDRSGAP--PFHVC-----VSTKEMASDELKQLRNTLTQEAIREHQMAKTGGTTTDLLQ 218
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 219 CGKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRW 254
>gi|448523122|ref|XP_003868858.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis Co
90-125]
gi|380353198|emb|CCG25954.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis]
Length = 123
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY-----------VCNMESRVKIKRKQPLSKKE 51
FC CG +L S C C V S K ++
Sbjct: 9 FCTYCGDLLD----SHSSTSEIKCTICSATYPKSKFANLKVVTKSSDEAFPSKLKSARSV 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++ ++D + EG + CP C + + YH LQ RSADE ++FY C N + R N
Sbjct: 65 VKTSLSKDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPNCGYRFRTN 122
>gi|348560474|ref|XP_003466038.1| PREDICTED: transcription elongation factor A protein 1-like [Cavia
porcellus]
Length = 425
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 331 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 388
Query: 102 KNCKHRW 108
C +RW
Sbjct: 389 NECGNRW 395
>gi|398405960|ref|XP_003854446.1| hypothetical protein MYCGRDRAFT_69782 [Zymoseptoria tritici IPO323]
gi|339474329|gb|EGP89422.1| hypothetical protein MYCGRDRAFT_69782 [Zymoseptoria tritici IPO323]
Length = 139
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSR---FSCPAC----PYVCNMESRVKIKRKQPLSKKEIQPI 55
FC C ML P DR + F+C C P + R +K + + +
Sbjct: 26 FCRECSNML---YPKEDRDNSSLMFACRTCQFSEPATASCIWRNSLKEDVQETAGNVLDV 82
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+D + P +++ C C+ AV+ + Q R+A+ M++FY+C N CKH W+
Sbjct: 83 -AEDPTL--PHSDIMCKMCRGRDAVFFQSQQRTAETGMALFYVCCNPECKHVWS 133
>gi|448411557|ref|ZP_21575958.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
gi|445670129|gb|ELZ22733.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
Length = 99
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 24 FSCPACPYVCNMESRVKIKRKQPL----SKKEIQPIFTQDAMME--GPQTEVTCPACKHG 77
+ C +C Y ESR + + + ++E + I T D E GP T+ CP C +
Sbjct: 9 WVCGSCGY---EESRNEAEEAETAVTTQGQEETEVIDTSDVSAEDMGPTTDARCPECGND 65
Query: 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A + Q R+ADE + F+ C C+H+W E
Sbjct: 66 RAFWEMKQIRAADESETRFFTCT--ECEHKWRE 96
>gi|440894606|gb|ELR47016.1| Transcription elongation factor A protein 2, partial [Bos grunniens
mutus]
Length = 284
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 219 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 276
Query: 102 KNCKHRW 108
C +RW
Sbjct: 277 NECGNRW 283
>gi|157119415|ref|XP_001653370.1| transcription elongation factor s-ii [Aedes aegypti]
gi|108883153|gb|EAT47378.1| AAEL001496-PA [Aedes aegypti]
Length = 303
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A +G +T++ C CK Y++LQTRS+DEPM+ F +C C HRW
Sbjct: 251 QLATNQGTKTDLLKCGKCKKRNCTYNQLQTRSSDEPMTTFVLC--NECGHRW 300
>gi|355562936|gb|EHH19498.1| Transcription elongation factor S-II protein 2, partial [Macaca
mulatta]
Length = 273
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 208 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 265
Query: 102 KNCKHRW 108
C +RW
Sbjct: 266 NECGNRW 272
>gi|327400303|ref|YP_004341142.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
gi|327315811|gb|AEA46427.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
Length = 104
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL-----SKKEIQPI 55
MEFCP C +++ Y+ + C C Y +V K+ + KE P+
Sbjct: 1 MEFCPKCKSIMIYQ------GDKLVCRKCGY-----EKVADDEKEEIVIVAKGNKEEVPV 49
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T V CP C + +A + Q R+ADE F+ C C W E
Sbjct: 50 IEGDNIKTLPTTRVVCPECGNREAYWWLRQLRAADESEVRFFRCT--KCGKTWRE 102
>gi|213623950|gb|AAI70441.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G QT++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 578 RELRNTMTQEAIREHQMAKTGGTQTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLC-- 635
Query: 102 KNCKHRW 108
C +RW
Sbjct: 636 NECGNRW 642
>gi|147904545|ref|NP_001090166.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|10801727|dbj|BAB16755.1| transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G QT++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 578 RELRNTMTQEAIREHQMAKTGGTQTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLC-- 635
Query: 102 KNCKHRW 108
C +RW
Sbjct: 636 NECGNRW 642
>gi|193786100|dbj|BAG51383.1| unnamed protein product [Homo sapiens]
Length = 272
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 205 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 262
Query: 102 KNCKHRW 108
C +RW
Sbjct: 263 NECGNRW 269
>gi|38505156|ref|NP_942016.1| transcription elongation factor A protein 2 isoform b [Homo
sapiens]
Length = 272
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 205 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 262
Query: 102 KNCKHRW 108
C +RW
Sbjct: 263 NECGNRW 269
>gi|149240061|ref|XP_001525906.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450029|gb|EDK44285.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 123
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKR-------KQPLSKKEIQPI 55
FC CG +L D + P +V K K L++ ++
Sbjct: 9 FCSYCGDLLDSHSASSDIQCNICLASYPKSQFANLKVVTKSADDAFPSKLKLARSVVKTS 68
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+D + EG + CP C + + YH LQ RSADE ++FY C + R N
Sbjct: 69 LKKDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTECGYRFRTN 122
>gi|119595576|gb|EAW75170.1| transcription elongation factor A (SII), 2, isoform CRA_c [Homo
sapiens]
Length = 324
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|406607842|emb|CCH40780.1| Transcription elongation factor [Wickerhamomyces ciferrii]
Length = 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A E T+ TC CK K Y++LQTRSADEP++ F C +NC +RW
Sbjct: 188 QGATQERAVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--ENCGNRW 237
>gi|195996889|ref|XP_002108313.1| hypothetical protein TRIADDRAFT_19600 [Trichoplax adhaerens]
gi|190589089|gb|EDV29111.1| hypothetical protein TRIADDRAFT_19600 [Trichoplax adhaerens]
Length = 129
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FC C ML + ++ R+ C C Y E+ K E+ I D
Sbjct: 18 IQFCQECNNMLYPKEDKENKVLRYMCRNCEYSRIAENPCIYVNKITHEINELTQIIA-DV 76
Query: 61 MME--GPQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+T E CP C +AV+ + Q+ A++ M ++Y+C+ + C HRW E
Sbjct: 77 VADPTLPRTREHACPKCMEREAVFFQAQSTLAEDNMKLYYVCSVQGCGHRWTE 129
>gi|290462619|gb|ADD24357.1| Transcription elongation factor S-II [Lepeophtheirus salmonis]
Length = 291
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 15 LPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEV-TCPA 73
L + PS+F+ + + E + K++ K+ I +Q A ++G +T++ C
Sbjct: 201 LTGIIEPSKFAVMTADEMASNEVK---KQRADFVKQGIDA--SQLAQIQGTKTDLLKCGK 255
Query: 74 CKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C Y+++QTRSADEPM+ F +C C +RW
Sbjct: 256 CLKRNCTYNQIQTRSADEPMTTFVLC--NECGNRW 288
>gi|71030256|ref|XP_764770.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68351726|gb|EAN32487.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 167
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK-----IKRKQPLSKKE---I 52
+ FCP C +L + + R R+ C C + +S+ + ++ KE +
Sbjct: 4 INFCPECNNILYAKADILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFV 63
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ +D + G T C C H KAV+ +L R D+ M + ++C N C + N+
Sbjct: 64 SPMVVKDPTL-GRTTRWRCLKCGHQKAVFFQLPERVTDDAMMLVFVCCNPGCGYYSNQ 120
>gi|374634249|ref|ZP_09706613.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
gi|373523014|gb|EHP67990.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
Length = 100
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQT--EVTCPACKHGKA 79
S + CP C Y IK K +++E + I ++ M G QT V CP+CK+ +
Sbjct: 11 SVYRCPKCGYEEEAVKPTVIKSKVKHTERE-KTIVLEEEMPVGTQTMRGVVCPSCKNDEV 69
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +QTR+ADEP + FY C C W E
Sbjct: 70 YFWMVQTRAADEPPTRFYRCT--KCGKTWRE 98
>gi|367006041|ref|XP_003687752.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
gi|357526057|emb|CCE65318.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + + Q +F Q A +E T+ TC CK K Y++LQTRSADEP++ F C
Sbjct: 236 KQKMDEISKQNLFNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC-- 293
Query: 102 KNCKHRW 108
+ C +RW
Sbjct: 294 EACGNRW 300
>gi|449432912|ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Cucumis sativus]
gi|449517969|ref|XP_004166016.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Cucumis sativus]
Length = 114
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYV----CNMESRVKIKRKQPLSKKEIQ 53
M+FC C +L P DR + ++C C + N R +I + +Q
Sbjct: 4 MKFCRECNNIL---YPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
Query: 54 PIFTQDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P+T+ V C C HG+AV+ + R +E M++F++C N NC HRW +
Sbjct: 61 DVAADPTL---PRTKAVRCAQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|303290875|ref|XP_003064724.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453750|gb|EEH51058.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 325
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK K Y++LQTRSADEPM+ F C NC +RW
Sbjct: 287 CGKCKQRKCTYYQLQTRSADEPMTTFVTCV--NCDNRW 322
>gi|213625366|gb|AAI70443.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G QT++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 578 RELRNTMTQEAIREHQMAKTGGTQTDLLQCEKCKKKNCSYNQVQTRSADEPMTTFVLC-- 635
Query: 102 KNCKHRW 108
C +RW
Sbjct: 636 NECGNRW 642
>gi|374634175|ref|ZP_09706540.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
gi|373523963|gb|EHP68883.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
Length = 100
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQT--EVTCPACKHGKA 79
S + CP C Y IK K +++E + I ++ M G QT V CP+CK+ +
Sbjct: 11 SVYRCPKCGYEEEAVKPTVIKSKVKHTERE-KTIVLEEEMPVGSQTMRGVVCPSCKNDEV 69
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +QTR+ADEP + FY C C W E
Sbjct: 70 YFWMVQTRAADEPPTRFYRCT--RCGKTWRE 98
>gi|426241819|ref|XP_004014783.1| PREDICTED: transcription elongation factor A protein 2 [Ovis aries]
Length = 336
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 269 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 326
Query: 102 KNCKHRW 108
C +RW
Sbjct: 327 NECGNRW 333
>gi|327266378|ref|XP_003217983.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Anolis carolinensis]
Length = 104
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++FCP CGT+L LP + + +C C + +++ ++ + K
Sbjct: 12 LDFCPECGTVL--PLPGLQ--DKVACRCCSFFIDVQDSTNLEVDGGKAVK---------- 57
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
GP + CP C YH Q RSADE ++FY C +CK + E
Sbjct: 58 ---GPLIDRKCPQCGQEGMTYHTRQMRSADEGQTVFYTCI--HCKFQEKE 102
>gi|449305125|gb|EMD01132.1| hypothetical protein BAUCODRAFT_21075 [Baudoinia compniacensis UAMH
10762]
Length = 121
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 3 FCPTCGTMLQYEL--------PHMDRPS--RFSCPACPYVCNMESRVKIKRKQPLSKKEI 52
FCP+C ML ++D + RF C CPY ++ R +RK K
Sbjct: 4 FCPSCSNMLTITTIPASHCAPTNIDEANKNRFECRTCPYQMILD-RKYFERKTMDLKAPE 62
Query: 53 QPIFTQDAMMEGPQTEVTCP--ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ ++ +TEV C C +A + ++Q RSADEPM+ FY C C W E
Sbjct: 63 AVLGGAESWKNVDKTEVRCKNETCDSLQAYFRQVQIRSADEPMTNFYKCV--KCGADWRE 120
>gi|348583099|ref|XP_003477312.1| PREDICTED: transcription elongation factor A protein 3-like [Cavia
porcellus]
Length = 347
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ TQ+A+ E G T++ C CK Y+++QT SADEPM+ F +C
Sbjct: 280 KELRNAMTQEAIREHQMAKTSGTNTDLLQCSKCKKKNCTYNQVQTLSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C HRW
Sbjct: 338 NECGHRW 344
>gi|444731638|gb|ELW71990.1| Transcription elongation factor A protein 1, partial [Tupaia
chinensis]
Length = 151
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 38 RVKIKRKQPLSKKEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSA 89
R++I KE++ T++A+ E G QT++ TC CK Y ++QTRSA
Sbjct: 38 RIQIWEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSA 97
Query: 90 DEPMSIFYMCANKNCKHRW 108
DEPM+ F +C C +RW
Sbjct: 98 DEPMTTFVVC--NECGNRW 114
>gi|327279244|ref|XP_003224367.1| PREDICTED: transcription elongation factor A protein 1-like [Anolis
carolinensis]
Length = 341
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ +C CK Y ++QTRSADEPM+ F +C
Sbjct: 237 KEMRKNLTKEAIREHQMAKTGGTQTDLFSCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 294
Query: 102 KNCKHRW 108
C +RW
Sbjct: 295 NECGNRW 301
>gi|417407905|gb|JAA50545.1| Putative dna-directed rna polymerase i subunit rpa12-like protein,
partial [Desmodus rotundus]
Length = 129
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L P C C + N+ E +V K+ +P+S
Sbjct: 20 LDFCPDCGSVL----PLPGTQDTVPCARCGFSINVRDFEGKVVKTSVVFHKLGTTKPMSM 75
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C +CK +
Sbjct: 76 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--SCKFQEK 126
Query: 110 E 110
E
Sbjct: 127 E 127
>gi|413948074|gb|AFW80723.1| hypothetical protein ZEAMMB73_218313 [Zea mays]
Length = 1230
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 65 PQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ V C C HG+AV+ + TR +E M++F++C + +C HRW E
Sbjct: 1185 PRTKTVRCNLCGHGEAVFFQAATR-GEEGMTLFFVCCSPDCGHRWRE 1230
>gi|387015674|gb|AFJ49956.1| Transcription elongation factor A protein 1 [Crotalus adamanteus]
Length = 304
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ +C CK Y ++QTRSADEPM+ F +C
Sbjct: 237 KEMRKNLTKEAIREHQMAKTGGTQTDLFSCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 294
Query: 102 KNCKHRW 108
C +RW
Sbjct: 295 NECGNRW 301
>gi|84995584|ref|XP_952514.1| DNA-directed RNA polymerase 2 subunit [Theileria annulata strain
Ankara]
gi|65302675|emb|CAI74782.1| DNA-directed RNA polymerase 2 subunit, putative [Theileria
annulata]
Length = 167
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK-----IKRKQPLSKKE---I 52
+ FCP C +L + + R R+ C C + +S+ + ++ KE +
Sbjct: 4 INFCPECNNILYAKADILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFV 63
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+ +D + G T C C H KAV+ +L R D+ M + ++C N C + N+
Sbjct: 64 SPMVVKDPTL-GRTTRWRCLKCGHQKAVFFQLPERVTDDAMMLVFVCCNPGCGYYSNQ 120
>gi|440633594|gb|ELR03513.1| hypothetical protein GMDG_01264 [Geomyces destructans 20631-21]
Length = 120
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI----- 55
++FC CG L + M C C I + Q LSK I
Sbjct: 7 IQFCSDCGDTLPISMDQM-----VKCDCCKM---------INKNQLLSKTTISTTSNFPS 52
Query: 56 ------------FTQDAMMEGPQ-TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
T D + + Q TE CP C + + + QTR ADE +IFY C
Sbjct: 53 LLREKLTSKTQALTADVVQDSKQRTEKLCPDCNKEELTFSQAQTRGADEGSTIFYFCL-- 110
Query: 103 NCKHRWNE 110
NC HR E
Sbjct: 111 NCGHRSKE 118
>gi|226442714|ref|NP_001139934.1| transcription elongation factor A protein 1 [Salmo salar]
gi|221220186|gb|ACM08754.1| Transcription elongation factor A protein 1 [Salmo salar]
Length = 311
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 64 GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
G QT++ TC CK + Y ++QTRSADEPM+ F C +C +RW
Sbjct: 265 GTQTDLFTCGKCKKKRCTYTQVQTRSADEPMTTFVFC--NDCGNRW 308
>gi|50552628|ref|XP_503724.1| YALI0E09196p [Yarrowia lipolytica]
gi|49649593|emb|CAG79314.1| YALI0E09196p [Yarrowia lipolytica CLIB122]
Length = 295
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 49 KKEIQPIFTQDAMMEGPQTE-------VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KKEI+ + Q+ TE TC CK K Y+++QTRSADEP++ F C
Sbjct: 228 KKEIEEMEKQNLFAARGATEQRAVTDRFTCGKCKQKKVSYYQMQTRSADEPLTTFCTC-- 285
Query: 102 KNCKHRW 108
+NC RW
Sbjct: 286 ENCGTRW 292
>gi|449017739|dbj|BAM81141.1| RNA polymerase III subunit [Cyanidioschyzon merolae strain 10D]
Length = 288
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 27 PACPYVCNMESRVKIKRKQPLSK-KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
P P+ ++V+ Q L + +E+ + + A E Q V C C KA +++LQ
Sbjct: 208 PLHPWTARDRNQVRAGVSQTLQQPEELVVLGAESAGQETSQ--VRCERCSARKASFYQLQ 265
Query: 86 TRSADEPMSIFYMCANKNCKHRWNE 110
TRSADEPM+ FY C C +W E
Sbjct: 266 TRSADEPMTTFYRCL--ECGAQWRE 288
>gi|440804552|gb|ELR25429.1| transcription elongation factor SII, hS-II-T1 isoform 8, putative
[Acanthamoeba castellanii str. Neff]
Length = 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 32 VCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVT----CPACKHGKAVYHELQTR 87
+C M S+ ++ +K ++ ++A+ G + T C CK + Y++LQTR
Sbjct: 108 LCQMTSQELASKELQEQRKALEEACLKEAIRGGQKQATTNMFRCHKCKKRECTYYQLQTR 167
Query: 88 SADEPMSIFYMCANKNCKHRW 108
SADEPM+ F C NC +RW
Sbjct: 168 SADEPMTTFVQCT--NCNNRW 186
>gi|328872944|gb|EGG21311.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQP-IFTQD-AMMEGPQTEVTCPACK-HGKA 79
+F C CPY + + K+ K PL +K+I +F D A Q ++ CP CK +A
Sbjct: 13 KFYCQTCPYFFGINN--KVVSKVPLVRKQIDSDVFGGDEAWNNSQQVDIECPTCKVRRRA 70
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRW 108
E+Q ADEP + +Y C C RW
Sbjct: 71 HLMEIQVYPADEPKTAYYKCT--YCATRW 97
>gi|403282600|ref|XP_003932732.1| PREDICTED: transcription elongation factor A protein 2 [Saimiri
boliviensis boliviensis]
Length = 306
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 239 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKSCTYTQVQTRSSDEPMTTFVVC-- 296
Query: 102 KNCKHRW 108
C +RW
Sbjct: 297 NECGNRW 303
>gi|353235706|emb|CCA67715.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Piriformospora indica DSM 11827]
Length = 127
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL----------SKKEI 52
FCP CGT+L Y P C C Y+ S IK L ++++
Sbjct: 14 FCPECGTLLDYPEPQ---AVSVKCEQCGYIEPASSYDDIKVVTQLREDAFPSELKQRRKM 70
Query: 53 QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
Q F Q+ + P +TC C H K E Q RSADE +IF C R N
Sbjct: 71 QTRF-QEEVETRPIETITCKNCGHDKGYTMEKQLRSADEGSTIFTECVRCGFLDRLN 126
>gi|401395411|ref|XP_003879596.1| putative transcription elongation factor TFIIS [Neospora caninum
Liverpool]
gi|325114003|emb|CBZ49561.1| putative transcription elongation factor TFIIS [Neospora caninum
Liverpool]
Length = 418
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 42 KRKQPLSKKE----IQPIFTQDAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSI 95
KR + L KKE Q + +MEG + C C+ K VY ++QTRS+DEPM+
Sbjct: 346 KRMRELQKKESMEACQSDWEMKKLMEGGTDGGQFPCFKCRTTKTVYFQMQTRSSDEPMTT 405
Query: 96 FYMCANKNCKHRW 108
F C C +RW
Sbjct: 406 FVTCL--ECGNRW 416
>gi|396465380|ref|XP_003837298.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312213856|emb|CBX93858.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 121
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC-NMESRVKIKRKQPLS--------KKE 51
+ FC CG +L + + +C C C + S+ + + +P + + E
Sbjct: 7 LVFCTDCGNLLDGSAGK--KNAILTCAICGASCKDTSSKTVVTQSKPTAFPSALRAKRSE 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+Q I D + + + C C K Y+ Q RSADE ++FY C C H+WN
Sbjct: 65 VQVIVEGD-IQTTSEIDHPCDECGRPKVRYYTQQLRSADEGSTVFYEC---ECGHKWN 118
>gi|331224793|ref|XP_003325068.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309304058|gb|EFP80649.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 129
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 41 IKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
+++K+ L ++ Q+ P + +CP C+H + YH LQ RSADE ++FY C
Sbjct: 60 LRQKRTLVQQTANSAGHQNDPAAAPLMDESCPKCQHPQMRYHTLQLRSADEGTTVFYECP 119
Query: 101 NKNCKHRWN 109
NC H+++
Sbjct: 120 --NCSHKFS 126
>gi|448500134|ref|ZP_21611613.1| transcription termination factor Tfs [Halorubrum coriense DSM
10284]
gi|445696856|gb|ELZ48935.1| transcription termination factor Tfs [Halorubrum coriense DSM
10284]
Length = 109
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGATTERDEALAAEFESTTEQTGDEVIETE 54
Query: 59 D-AMMEG--PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T+V C C HG+A Y QT +ADEP + F+ C K C RW
Sbjct: 55 EGANFEGKPTATDVVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGRRW 105
>gi|336254115|ref|YP_004597222.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
gi|335338104|gb|AEH37343.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
Length = 107
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI-FTQD 59
M+FC CG+M++ + R C +C + + S+ + I ++D
Sbjct: 1 MQFCDDCGSMMKAD------GDRMVCTSCGAETERDREQEDAFVTTESQTDDDVIESSED 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 ANFEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 103
>gi|257051319|ref|YP_003129152.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
gi|256690082|gb|ACV10419.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
Length = 106
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFC CG+M++ E + C +C E+ + ++ + + D+
Sbjct: 1 MEFCDECGSMMKTE------GDMWVCGSCGAETPREAATESGMVTTQGQEAGEVVDLSDS 54
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P TE+ C C + +A + Q R+ADE + F+ C C H+W E
Sbjct: 55 EADARPTTEIQCVECDNDRAYWELKQIRAADESETRFFTCT--ECGHKWRE 103
>gi|195112999|ref|XP_002001059.1| GI22183 [Drosophila mojavensis]
gi|193917653|gb|EDW16520.1| GI22183 [Drosophila mojavensis]
Length = 121
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC-----PYVCNMESRVKIKRKQPLSKKEIQPIFT 57
FCP+CG++L P + C C P V E+ ++I T
Sbjct: 10 FCPSCGSIL----PPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPRKISKKVT 65
Query: 58 QD---AMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
Q A +GP E CP C + K Y LQ RSADE ++F+ C CK++ +E
Sbjct: 66 QKSEAAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCL--KCKYKESE 119
>gi|155370263|ref|YP_001425797.1| hypothetical protein FR483_N165L [Paramecium bursaria Chlorella
virus FR483]
gi|155123583|gb|ABT15450.1| hypothetical protein FR483_N165L [Paramecium bursaria Chlorella
virus FR483]
Length = 180
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P +TC CK K Y+E+QTRSADEPM++F C C RW +
Sbjct: 137 PDGMLTCGKCKSRKTSYYEMQTRSADEPMTVFAKC--HTCGSRWKQ 180
>gi|148697997|gb|EDL29944.1| transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>gi|32189438|ref|NP_035672.1| transcription elongation factor A protein 3 [Mus musculus]
gi|28381402|sp|P23881.3|TCEA3_MOUSE RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3;
AltName: Full=Transcription elongation factor TFIIS.h
gi|3288547|emb|CAA11392.1| transcription elongation factor TFIIS.h [Mus musculus]
gi|12840988|dbj|BAB25037.1| unnamed protein product [Mus musculus]
gi|14789853|gb|AAH10807.1| Transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>gi|157888820|dbj|BAF80886.1| tissue-specific transcription factor S-II [Mus musculus]
Length = 347
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>gi|12832213|dbj|BAB22010.1| unnamed protein product [Mus musculus]
Length = 347
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>gi|82539590|ref|XP_724172.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Plasmodium
yoelii yoelii 17XNL]
gi|23478728|gb|EAA15737.1| DNA-directed RNA polymerase ii 15.1 kDa polypeptide [Plasmodium
yoelii yoelii]
Length = 226
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES---RVKIKRKQPLSKKE---IQP 54
+ FC C +L ++ + C +C Y+ N ++ + + ++KE I P
Sbjct: 4 VNFCEKCNNILYARSDKKNKKLIYVCRSCDYISNKQNENHNIVARINYNYNRKEDIYIHP 63
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKH 106
D+ + G + C C + +AV+ +L + + PM++ Y+C NK+C++
Sbjct: 64 ETKNDSAL-GRVRDWVCKQCNNSEAVFLQLXEKISYNPMALIYVCTNKDCQY 114
>gi|395326429|gb|EJF58839.1| DNA-directed RNA polymerase I kDa polypeptide [Dichomitus squalens
LYAD-421 SS1]
Length = 126
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV---CNMESRVKIKRKQP------LSKKEIQ 53
FCP CGT+L LP D +C C +V + E+ + R P L +K
Sbjct: 13 FCPDCGTLLN--LPQ-DGEFEVTCEQCGHVEPASSYENIEIVTRSHPEAFPSALRQKRKT 69
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A + + CP C H +A E Q RSADE +IFY C CK W
Sbjct: 70 QTKVHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTCV--RCKFGW 122
>gi|226529427|ref|NP_001148477.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide [Zea mays]
gi|195619656|gb|ACG31658.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide [Zea mays]
gi|195645694|gb|ACG42315.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide [Zea mays]
gi|414588053|tpg|DAA38624.1| TPA: DNA-directed RNA polymerase subunit [Zea mays]
Length = 114
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYV----CNMESRVKIKRKQPLSKKEIQ 53
M+FC C +L P DR R F+C C + N R ++ + +Q
Sbjct: 4 MKFCRECNNIL---YPKEDRDRRTLFFACRNCEHQEVSDNNCVYRNEVHHTAGERTQVLQ 60
Query: 54 PIFTQDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + + P+T+ V C C HG+AV+ + R +E M++F++C + +C HRW E
Sbjct: 61 DVASDPTL---PRTKTVRCNLCGHGEAVFFQAAAR-GEEGMTLFFVCCSPDCGHRWRE 114
>gi|303388621|ref|XP_003072544.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
gi|303301685|gb|ADM11184.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M FCP C +ML + + SC C Y+ + ++ + ++ K+ +D
Sbjct: 1 MLFCPLCSSMLV--VKRQPAGNELSCIMCGYLYGISK--EMSKTIAMTPKKSDGFVDEDE 56
Query: 61 MME-----GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ G + E C + + ELQTRSADEPM+IFY C CK W E
Sbjct: 57 NLKFVSKCGKKCE-----CGSEEVSFVELQTRSADEPMTIFYKCI--RCKKVWKE 104
>gi|159116058|ref|XP_001708251.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
gi|157436361|gb|EDO80577.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQ---PIFTQD 59
FC C T+L+ P+ Y + + + R+ + E+ Q+
Sbjct: 4 FCQECATILETMGPY------------DYCALCQKKYERARQGDVVTSEVHLQTHYVAQE 51
Query: 60 AMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
M E P + TCP C HG+A Y +Q RSADE +IF+ C + K+R N
Sbjct: 52 RMTENRPVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKYRTN 102
>gi|62543505|ref|NP_001015008.1| transcription elongation factor A protein 3 [Rattus norvegicus]
gi|60552718|gb|AAH91180.1| Transcription elongation factor A (SII), 3 [Rattus norvegicus]
Length = 348
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|392572001|gb|EIW65173.1| DNA-directed RNA polymerase I kDa polypeptide [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQ-----PLSKKEIQPI 55
FCP CGT+L LP D + +C C +V + ++I K P + ++ +
Sbjct: 13 FCPDCGTLLN--LPQ-DGQFQVTCEQCAHVEPASSYENIEIITKSHPDAFPSALRQKRKT 69
Query: 56 FTQDAMMEGPQTEVT--CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T++ +VT CP C H +A E Q RSADE +IFY C CK W
Sbjct: 70 QTKEHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTCV--KCKFGW 122
>gi|209876019|ref|XP_002139452.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
gi|209555058|gb|EEA05103.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
Length = 322
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 66 QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + TC C+ K Y ++QTRSADEPM+ F C NC +RW
Sbjct: 280 EGQFTCGKCRTNKTTYFQMQTRSADEPMTTFVRCL--NCGNRW 320
>gi|225431922|ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
vinifera]
gi|147769002|emb|CAN66735.1| hypothetical protein VITISV_024186 [Vitis vinifera]
gi|296083263|emb|CBI22899.3| unnamed protein product [Vitis vinifera]
Length = 114
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P DR + ++C C + E+ + + S E +
Sbjct: 4 MKFCRECNNIL---YPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVL- 59
Query: 58 QDAMME--GPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+T+ V C C HG+AV+ + R +E M++F++C N NC +RW +
Sbjct: 60 QDVAADPTLPRTKSVRCAQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|326489753|dbj|BAK01857.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 65 PQT-EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T EV C C HG+AV+ + R +E M++F++C N +C HRW E
Sbjct: 40 PRTKEVRCAVCGHGEAVFFQATAR-GEEGMTLFFVCCNPSCGHRWRE 85
>gi|221061105|ref|XP_002262122.1| transcription factor [Plasmodium knowlesi strain H]
gi|193811272|emb|CAQ42000.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 407
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E C CK + VYH+LQTRS+DEPM+ F C C +RW
Sbjct: 367 EFQCFKCKGYETVYHQLQTRSSDEPMTTFVTCL--KCNNRW 405
>gi|156841304|ref|XP_001644026.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114659|gb|EDO16168.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 323
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + + Q +F Q A +E T+ TC CK K Y++LQTRSADEP++ F C
Sbjct: 256 KQKMEEITRQNLFNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC-- 313
Query: 102 KNCKHRW 108
+ C +RW
Sbjct: 314 EACGNRW 320
>gi|344287082|ref|XP_003415284.1| PREDICTED: transcription elongation factor A protein 3-like
[Loxodonta africana]
Length = 500
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 282 KELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 339
Query: 102 KNCKHRW 108
C +RW
Sbjct: 340 NECGNRW 346
>gi|448107368|ref|XP_004205344.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|448110344|ref|XP_004201608.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359382399|emb|CCE81236.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359383164|emb|CCE80471.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPAC--PYVCNMESRVKIKRKQP---------LSKKE 51
FC +CG +L + + +C C Y + + +K+ + +
Sbjct: 9 FCTSCGNLLD----KISNSTSLNCKLCNESYPASKFADLKVTTTSSEDAFPSALKMQRSV 64
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++ +D + EG + CP C + YH LQ RSADE ++FY C + K R N
Sbjct: 65 VKTSLKKDELDEGATIKEKCPRCGCEEMKYHTLQLRSADEGATVFYTCTDCGYKFRTN 122
>gi|403220912|dbj|BAM39045.1| transcription elongation factor [Theileria orientalis strain
Shintoku]
Length = 319
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
I+ IF + + + + C C + Y++LQTRS+DEPM+ F C NCK+RW
Sbjct: 267 IKNIF----LNQKSKGQFKCGKCNSRQTTYYQLQTRSSDEPMTTFVTCL--NCKNRW 317
>gi|196008337|ref|XP_002114034.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
gi|190583053|gb|EDV23124.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
Length = 302
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 42 KRKQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
K +Q +K+ I+ Q A+ +G +T++ TC C Y+++QTRSADEPM+ F C
Sbjct: 224 KLRQGYAKEGIRD--AQMAVTQGTKTDLLTCGKCHKKNCSYNQMQTRSADEPMTTFVFCH 281
Query: 101 NKNCKHRW 108
C HRW
Sbjct: 282 --ECGHRW 287
>gi|156541048|ref|XP_001600804.1| PREDICTED: transcription elongation factor S-II-like [Nasonia
vitripennis]
Length = 312
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 260 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 309
>gi|388583993|gb|EIM24294.1| transcription elongation factor [Wallemia sebi CBS 633.66]
Length = 282
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 26 CPACPYVCNMESR--VKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVT----CPACKHGKA 79
PA + C M S +RKQ E+ +F A GPQ T C CK K
Sbjct: 196 TPAATF-CRMSSADMASEERKQQDRALELSNLFK--ARGAGPQQAETDSFKCGRCKQRKC 252
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRW 108
Y+++QTRSADEPM+ F C C +RW
Sbjct: 253 TYYQMQTRSADEPMTTFVTCT--VCNNRW 279
>gi|359322715|ref|XP_537866.4| PREDICTED: uncharacterized protein LOC480747 [Canis lupus
familiaris]
Length = 592
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 525 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSDEPMTTFVVC-- 582
Query: 102 KNCKHRW 108
C +RW
Sbjct: 583 NECGNRW 589
>gi|448728181|ref|ZP_21710512.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
gi|445797399|gb|EMA47874.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 48 SKKEIQPIFTQDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKH 106
S+++ + I DA G P TEV CP C + +A ++ Q RSADE + F++C C+H
Sbjct: 22 SQEQSEIIDVSDAEERGLPTTEVDCPECDNDRAYWYMQQIRSADESETRFFVCT--ECEH 79
Query: 107 RWNE 110
W E
Sbjct: 80 SWRE 83
>gi|440897844|gb|ELR49454.1| Transcription elongation factor A protein 3, partial [Bos grunniens
mutus]
Length = 328
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 261 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 318
Query: 102 KNCKHRW 108
C +RW
Sbjct: 319 NECGNRW 325
>gi|383855900|ref|XP_003703448.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Megachile rotundata]
Length = 125
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN--------MESRVKIKRKQPLSKKEIQP 54
FC CG++L P + C AC M + +K + +
Sbjct: 16 FCSDCGSIL----PLLGEKGDVKCYACKRTWGPEAFGDMYMNYTIHFNKKDAYESSKQKD 71
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A EGP E CP C++ K Y LQ RSADE ++FY C CK + E
Sbjct: 72 DDEDEA--EGPVVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCT--KCKFKETE 123
>gi|297830308|ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
lyrata]
gi|297328876|gb|EFH59295.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
lyrata]
Length = 114
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FC C +L P D+ + ++C C + ++ + + S E I T
Sbjct: 4 MKFCRECNNIL---YPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60
Query: 58 QDAMM-EGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A P+T+ V C C+H +AV+ + R +E M++F++C N NC HRW E
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHSEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRE 114
>gi|261193964|ref|XP_002623387.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239588401|gb|EEQ71044.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|327354495|gb|EGE83352.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 111
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISRADPTPRYPLGVNRFECRTCPYQYVLD-RTYYERTE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIFY 97
+D CPA C +A +++LQ RSADEPM+ F+
Sbjct: 61 LGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFF 105
>gi|348529301|ref|XP_003452152.1| PREDICTED: hypothetical protein LOC100695418 [Oreochromis
niloticus]
Length = 620
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+++ + TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 553 KQLRNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLC-- 610
Query: 102 KNCKHRW 108
C +RW
Sbjct: 611 NECGNRW 617
>gi|385803764|ref|YP_005840164.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi C23]
gi|339729256|emb|CCC40490.1| transcription elongation factor TFS [Haloquadratum walsbyi C23]
Length = 107
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV-----CNMESRVKIKRKQPLSKKEIQPI 55
M+FC CG+M++ + + C C + + + +Q ++ I
Sbjct: 1 MKFCDECGSMMKK------QDDIWICSDCGAEELADEADSATMTSTESQQESGAVDVSDI 54
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D GP T V CP C + A Y Q R+ADE + F+ C C H+W E
Sbjct: 55 DDADI---GPTTTVICPECGNDTARYEMKQIRAADESETRFFTCT--ECNHKWRE 104
>gi|429962884|gb|ELA42428.1| transcription elongation factor S-II [Vittaforma corneae ATCC
50505]
Length = 274
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK K Y +LQTRS DEPM+ F C NC HRW
Sbjct: 237 CSKCKQKKCTYSQLQTRSCDEPMTTFVTCT--NCGHRW 272
>gi|17738105|ref|NP_524439.1| RpI12 [Drosophila melanogaster]
gi|7300774|gb|AAF55918.1| RpI12 [Drosophila melanogaster]
gi|216587887|gb|ACJ73151.1| GM14478p [Drosophila melanogaster]
Length = 120
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQPLSKKEIQPIFTQ-- 58
FCP+CG++L P + C C + ++ S K + + + +F +
Sbjct: 10 FCPSCGSIL----PELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 59 ---DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ +GP E CP C H K Y LQ RSADE ++F+ C CK + +E
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESE 118
>gi|410722289|ref|ZP_11361595.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597324|gb|EKQ51951.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP------ 54
MEFCP CGT+L P D C C C + ++ K+ LS+ EI
Sbjct: 1 MEFCPKCGTVL---FPKGD------CFECS--CGYQKKIT---KESLSEYEISEKVAPKE 46
Query: 55 --IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
I T D + P T+ CP C + A + QTR ADE + F C C W E
Sbjct: 47 NVIVTGDDVKTLPTTKALCPKCGNRLAFWWLQQTRRADESETRFLRCT--ECGQTWRE 102
>gi|395832491|ref|XP_003789304.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Otolemur
garnettii]
Length = 180
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L P +C C + N+ E +V K+ +S
Sbjct: 71 LDFCPDCGSVL----PLPGAQDAVTCTRCGFSINVRDFEGKVVKTSFVFHKLGTAMHMSV 126
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E P F +GP + C C H YH Q RSADE ++FY C N
Sbjct: 127 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTN 171
>gi|222479401|ref|YP_002565638.1| transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
gi|222452303|gb|ACM56568.1| Transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
Length = 108
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M++ + + C + + S+ E + I DA
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCSSEDCGNELGRDNGDDEWTTESQVESEVIDVSDA 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P+T CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 57 EDKGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCT--ECEHKWRE 105
>gi|449299188|gb|EMC95202.1| hypothetical protein BAUCODRAFT_530419 [Baudoinia compniacensis
UAMH 10762]
Length = 311
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAV 80
P RF + N E R + L K+ ++ T + T +TC CK +
Sbjct: 227 PKRFVTMTSDELKNAEKRAQ---DAALEKENMKASMTAQEE-KAISTTMTCNKCKQSRVA 282
Query: 81 YHELQTRSADEPMSIFYMCANKNCKHRW 108
Y + QTRSADEPM+ F C NC +RW
Sbjct: 283 YTQAQTRSADEPMTTFCECT--NCGNRW 308
>gi|47220832|emb|CAG00039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 424
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 357 KQLRNTLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLC-- 414
Query: 102 KNCKHRW 108
C +RW
Sbjct: 415 NECGNRW 421
>gi|114052232|ref|NP_001039825.1| transcription elongation factor A protein 3 [Bos taurus]
gi|122135940|sp|Q2KI09.1|TCEA3_BOVIN RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3
gi|86438556|gb|AAI12813.1| Transcription elongation factor A (SII), 3 [Bos taurus]
gi|296490011|tpg|DAA32124.1| TPA: transcription elongation factor A protein 3 [Bos taurus]
Length = 349
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 282 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 339
Query: 102 KNCKHRW 108
C +RW
Sbjct: 340 NECGNRW 346
>gi|410928702|ref|XP_003977739.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Takifugu rubripes]
Length = 118
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC-----NMESRVKIKRKQPLSKKEIQPI 55
+ FCP CG +L LP + R CP C + N + P+ + +
Sbjct: 8 LNFCPECGNIL--PLPGLQDTVR--CPRCSFSIPVAEFNGQQIRSTVVLNPIERSAVILE 63
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
D+ ++GP + C C VYH Q RSADE ++F+ C
Sbjct: 64 DKDDSELKGPVIDRRCLRCNKEGMVYHTRQMRSADEGQTVFFTC 107
>gi|171186130|ref|YP_001795049.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
gi|170935342|gb|ACB40603.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
Length = 110
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQP-IFTQD 59
M FCP ++L + D+ + CP C Y VK + + + + P I D
Sbjct: 1 MRFCPNDRSLL-VPVKRGDK-TVLRCPKCGYEEEASGDVKSRYQSKAAVENKNPVIVVAD 58
Query: 60 AMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P+ + CP C H +A QTR+ADEP + FY C C H W E
Sbjct: 59 NPVNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCT--KCGHTWRE 108
>gi|307180955|gb|EFN68743.1| Transcription elongation factor A protein 1 [Camponotus floridanus]
Length = 311
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 259 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 308
>gi|290561092|gb|ADD37948.1| DNA-directed RNA polymerase I subunit RPA12 [Lepeophtheirus
salmonis]
Length = 120
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRV--KIKRKQPLSKKE---IQPIFT 57
FC CG++L P++ C AC ++ + +I +K+E +
Sbjct: 12 FCSDCGSIL----PNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVG 67
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P E TC C HG Y LQ RSADE ++F+ C CK + E
Sbjct: 68 VNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCL--KCKFKETE 118
>gi|448932235|gb|AGE55795.1| transcription elongation factor S-II [Acanthocystis turfacea
Chlorella virus MN0810.1]
Length = 184
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P + C C K Y+ELQTRSADEPM++F C NC +RW +
Sbjct: 141 PDGMLQCKKCGSKKTSYYELQTRSADEPMTVFARC--HNCPNRWKQ 184
>gi|391331678|ref|XP_003740270.1| PREDICTED: transcription elongation factor S-II-like [Metaseiulus
occidentalis]
Length = 288
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
+Q L+K+ I Q A+ G +T++ C CK Y+++QTRSADEPM+ F C
Sbjct: 224 RQKLTKEAIDD--HQMALTSGTKTDLLKCGKCKKSNCTYNQVQTRSADEPMTTFAFC--N 279
Query: 103 NCKHRW 108
C +RW
Sbjct: 280 ECGNRW 285
>gi|73950631|ref|XP_535363.2| PREDICTED: transcription elongation factor A protein 3 [Canis lupus
familiaris]
Length = 348
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|410966352|ref|XP_003989697.1| PREDICTED: transcription elongation factor A protein 3 [Felis
catus]
Length = 347
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>gi|383847733|ref|XP_003699507.1| PREDICTED: transcription elongation factor S-II-like isoform 2
[Megachile rotundata]
Length = 311
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 259 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 308
>gi|403287385|ref|XP_003934929.1| PREDICTED: transcription elongation factor A protein 3 [Saimiri
boliviensis boliviensis]
Length = 348
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|327289455|ref|XP_003229440.1| PREDICTED: transcription elongation factor A protein 3-like [Anolis
carolinensis]
Length = 404
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 KELRNAMTQEAIREHQMAKTGGTATDLFQCGKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|405121407|gb|AFR96176.1| positive transcription elongation factor [Cryptococcus neoformans
var. grubii H99]
Length = 333
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C C K Y+++QTRSADEPM+ F C NC +RW
Sbjct: 295 CGRCHQRKCTYYQMQTRSADEPMTTFVTCT--NCNNRW 330
>gi|355557658|gb|EHH14438.1| hypothetical protein EGK_00364, partial [Macaca mulatta]
Length = 348
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|344211251|ref|YP_004795571.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|448630345|ref|ZP_21673000.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|448667349|ref|ZP_21685891.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|448688986|ref|ZP_21694723.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
gi|343782606|gb|AEM56583.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|445756268|gb|EMA07643.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|445770384|gb|EMA21448.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|445778856|gb|EMA29798.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
Length = 99
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 23 RFSCPACPY--VCNMESRVKIK-RKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKA 79
R+ C +C Y N E+ ++ Q + E+ DA GP T CP C + +A
Sbjct: 8 RWVCGSCGYEKARNAETEQEMAVTTQGQEESEVVDTSEVDAEDMGPTTGARCPECGNERA 67
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
Y Q R+ADE + F+ C C+H+W E
Sbjct: 68 FYEMKQIRAADESETRFFTCT--ECEHKWRE 96
>gi|225709336|gb|ACO10514.1| DNA-directed RNA polymerase I subunit RPA12 [Caligus rogercresseyi]
Length = 120
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3 FCPTCGTMLQYELPHMDRPSR--FSCPACPYVCNMESRV--KIKRKQPLSKKEIQPI--- 55
FC CG++L D PSR C AC ++ + +I +K+E +
Sbjct: 12 FCSDCGSILP------DVPSRGPLHCVACGSEADVSQFLDKEITYTIEFNKREDLDVARR 65
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D P E TCP C + K Y LQ RSADE ++F+ C CK + E
Sbjct: 66 VNEDNSSSEPTVERTCPNCGYSKMSYAALQLRSADEGQTVFFTCL--KCKFKETE 118
>gi|383847731|ref|XP_003699506.1| PREDICTED: transcription elongation factor S-II-like isoform 1
[Megachile rotundata]
Length = 312
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 260 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 309
>gi|348501107|ref|XP_003438112.1| PREDICTED: transcription elongation factor A protein 1-like
[Oreochromis niloticus]
Length = 311
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ + G QT++ TC CK Y ++QTRSADEPM+ F C
Sbjct: 244 KEMRKNLTKEAVRDHQMATTGGTQTDLFTCGKCKGKSCTYTQVQTRSADEPMTTFVFC-- 301
Query: 102 KNCKHRW 108
C +RW
Sbjct: 302 NECGNRW 308
>gi|350536729|ref|NP_001232494.1| putative DNA directed RNA polymerase II polypeptide I [Taeniopygia
guttata]
gi|197127138|gb|ACH43636.1| putative DNA directed RNA polymerase II polypeptide I [Taeniopygia
guttata]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF- 56
+ FC C ML P D+ +R ++C C Y ++ K E+ I
Sbjct: 14 IRFCQECNNML---YPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 57 --TQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 71 DVSQDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|433638977|ref|YP_007284737.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|433290781|gb|AGB16604.1| transcription factor S, archaeal [Halovivax ruber XH-70]
Length = 107
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQD- 59
M+FC CG+M++ P D+ C AC + + + ++ + + I T++
Sbjct: 1 MQFCDECGSMMK---PEGDQ---LVCTACDATIDRDREQEADFVTTETQTDDEVIETEEN 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y+ QT SADEP + F+ C C H+W
Sbjct: 55 ADFEGKPKATDVRCDQCGTEEAWYYIQQTASADEPPTRFFKCT--ECGHKW 103
>gi|225716628|gb|ACO14160.1| Transcription elongation factor A protein 1 [Esox lucius]
Length = 181
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 39 VKIKRKQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFY 97
+K+ RK L+K+ I+ Q + G QT++ TC CK + Y ++QTRSADEPM+ F
Sbjct: 113 LKLIRKN-LTKEAIRD--HQVSQTGGTQTDLFTCGKCKKKRCTYTQVQTRSADEPMTTFV 169
Query: 98 MCANKNCKHRW 108
C C +RW
Sbjct: 170 FCM--ECGNRW 178
>gi|384941052|gb|AFI34131.1| transcription elongation factor A protein 3 [Macaca mulatta]
gi|387540828|gb|AFJ71041.1| transcription elongation factor A protein 3 [Macaca mulatta]
Length = 348
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|242075084|ref|XP_002447478.1| hypothetical protein SORBIDRAFT_06g001670 [Sorghum bicolor]
gi|241938661|gb|EES11806.1| hypothetical protein SORBIDRAFT_06g001670 [Sorghum bicolor]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYV----CNMESRVKIKRKQPLSKKEIQ 53
M+FC C +L P DR R F+C C + N R ++ + +Q
Sbjct: 4 MKFCRECNNIL---YPKEDRDRRTLYFACRNCEHQEVSDNNCVYRNEVHHTAGERTQVLQ 60
Query: 54 PIFTQDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + + P+T+ V C AC HG+AV+ + R +E M++F++C + +C +RW E
Sbjct: 61 DVASDPTL---PRTKTVRCNACGHGEAVFFQATAR-GEEGMTLFFVCCSPDCGNRWRE 114
>gi|322786324|gb|EFZ12874.1| hypothetical protein SINV_06958 [Solenopsis invicta]
Length = 113
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 61 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 110
>gi|45360521|ref|NP_988887.1| transcription elongation factor A (SII), 1 [Xenopus (Silurana)
tropicalis]
gi|37589996|gb|AAH59769.1| hypothetical protein MGC76031 [Xenopus (Silurana) tropicalis]
gi|89267843|emb|CAJ82979.1| transcription elongation factor A (SII), 1 [Xenopus (Silurana)
tropicalis]
Length = 304
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G +T++ TC CK Y ++QTRSADEPM+ F C
Sbjct: 237 KEMRKNLTKEAIREHQMARTGGTETDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVFC-- 294
Query: 102 KNCKHRW 108
C +RW
Sbjct: 295 NECGNRW 301
>gi|410905253|ref|XP_003966106.1| PREDICTED: transcription elongation factor A protein 3-like
[Takifugu rubripes]
Length = 502
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
K+++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 419 KQLRNTLTQEAIREHQMAKTGGTSTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLC-- 476
Query: 102 KNCKHRW 108
C +RW
Sbjct: 477 NECGNRW 483
>gi|255712113|ref|XP_002552339.1| KLTH0C02552p [Lachancea thermotolerans]
gi|238933718|emb|CAR21901.1| KLTH0C02552p [Lachancea thermotolerans CBS 6340]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQP--------LSKKEI 52
FC CG +L + P ++ C C Y S +++ SKK +
Sbjct: 9 FCAECGNLL--DNPSAVEGAQLECAQCGAEYAKAKFSNLRVVTSTADDAFPSALRSKKSV 66
Query: 53 -QPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+ +D + EG CP C + + YH LQ RSADE ++FY C + + R N
Sbjct: 67 VKTSLKKDELEEGATIREKCPQCGNDEMHYHTLQLRSADEGATVFYTCTSCGYRFRTN 124
>gi|225681739|gb|EEH20023.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 134
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 1 MEFCPTCGTMLQYEL--PHMDRP---SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPI 55
+ FCP C L P P +RF C CPY ++ R +R + + +KE+ +
Sbjct: 3 LTFCPNCSNALTISRSEPTSRYPLGVNRFECRTCPYQYILD-RTYYERTE-MKRKEVADV 60
Query: 56 FT-QDAMMEGPQTEVTCPA--CKHGKAVYHELQTRSADEPMSIF 96
+D CPA C +A +++LQ RSADEPM+ F
Sbjct: 61 LGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTF 104
>gi|448640595|ref|ZP_21677498.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|448651376|ref|ZP_21680445.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
gi|445761905|gb|EMA13144.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|445770903|gb|EMA21961.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
Length = 99
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 23 RFSCPACPY--VCNMESRVKIK-RKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKA 79
R+ C +C Y N E+ ++ Q + E+ DA GP T CP C + +A
Sbjct: 8 RWVCGSCGYEKARNAEAEQEMAVTTQGQEESEVVDTSEVDAEDMGPTTGARCPECGNERA 67
Query: 80 VYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
Y Q R+ADE + F+ C C+H+W E
Sbjct: 68 FYEMKQIRAADESETRFFTCT--ECEHKWRE 96
>gi|403213967|emb|CCK68468.1| hypothetical protein KNAG_0B00190 [Kazachstania naganishii CBS
8797]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 49 KKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
K ++ +D + EG + CP C + + YH LQ RSADE ++FY C + K R
Sbjct: 64 KSVVKTQLKKDELGEGATIKEKCPQCGNDEMQYHTLQLRSADEGATVFYTCTSCGYKFRT 123
Query: 109 N 109
N
Sbjct: 124 N 124
>gi|307192626|gb|EFN75800.1| Transcription elongation factor S-II [Harpegnathos saltator]
Length = 278
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 226 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 275
>gi|119615455|gb|EAW95049.1| transcription elongation factor A (SII), 3, isoform CRA_b [Homo
sapiens]
Length = 396
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|297666066|ref|XP_002811364.1| PREDICTED: transcription elongation factor A protein 3-like [Pongo
abelii]
Length = 74
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 7 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 64
Query: 102 KNCKHRW 108
C +RW
Sbjct: 65 NECGNRW 71
>gi|444509635|gb|ELV09391.1| DNA-directed RNA polymerase II subunit RPB9 [Tupaia chinensis]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF- 56
+ FC C ML P D+ +R ++C C Y ++ K E+ I
Sbjct: 14 IRFCQECNNML---YPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIA 70
Query: 57 --TQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 71 DVSQDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|443704238|gb|ELU01383.1| hypothetical protein CAPTEDRAFT_211837 [Capitella teleta]
Length = 115
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES--RVKIKRKQPLSKKEIQPI-FT 57
+EFCP C +L P D+ +C C + ++ ++IK K +K++ + +
Sbjct: 7 VEFCPECAAIL----PLPDKREFVTCFCCKFTIPIKDFDGIEIKSKIIFNKRKTKNAGLS 62
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+ GP + C C + Y QTRSADE ++FY C
Sbjct: 63 SEDQAAGPTVDRQCAKCGNDGMTYATRQTRSADEGQTVFYSC 104
>gi|305662838|ref|YP_003859126.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
gi|304377407|gb|ADM27246.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
Length = 112
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY--VCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M FCP C +++ ++ + + C C Y + N SR + R +KE +
Sbjct: 1 MMFCPKCRSLMSFD----SKRRVYRCSRCGYEVIPNNNSRAIVSRTIEHKEKEKLVVIEG 56
Query: 59 DAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ P + CP C + ++QTR+ADEP + FY C +C H W E
Sbjct: 57 TSVSVPPNAVLVKGHTRCPKCGSEEVYAWQMQTRAADEPPTTFYKCP--SCGHTWRE 111
>gi|289580310|ref|YP_003478776.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448283980|ref|ZP_21475245.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448352979|ref|ZP_21541757.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
gi|289529863|gb|ADD04214.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445572075|gb|ELY26617.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445641046|gb|ELY94129.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
Length = 107
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FC CG+M+ M R C C + + + S+ + + I + ++
Sbjct: 1 MQFCDDCGSMM------MAEDDRMVCTNCGAASERDREREDEFVTTESQTDDEVIESDEN 54
Query: 60 AMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
A EG T+V C C +A Y QT SADEP + F+ C C HRW
Sbjct: 55 ANFEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCT--ECGHRW 103
>gi|448455941|ref|ZP_21594873.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
gi|448470477|ref|ZP_21600484.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445808041|gb|EMA58118.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445813160|gb|EMA63142.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
Length = 108
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
M+FC CG+M+ + + C + + S+ E + I DA
Sbjct: 1 MKFCDECGSMMM----SGEGEDHWVCSSEDCDNELGREDDDDEWTTESQVESEVIDVSDA 56
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+G P+T CP C + +A ++ Q RSADE + F++C C+H+W E
Sbjct: 57 EDKGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCT--ECEHKWRE 105
>gi|389750913|gb|EIM91986.1| DNA-directed RNA polymerase, partial [Stereum hirsutum FP-91666
SS1]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQP------LSKKEIQ 53
FC CGT+L ++P D + +C C + + E+ R P L +K
Sbjct: 12 FCGDCGTLL--DVPKADEGT-VNCEQCGHEEPASSYENIEITTRSHPDAFPSALRQKRKT 68
Query: 54 PIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
T +A + CP C H +A E+Q RSADE +I Y C CKH W
Sbjct: 69 QTKTHEATEGLLKVTEKCPECGHMEAFSKEIQMRSADEGSTILYTCV--ACKHGW 121
>gi|281351551|gb|EFB27135.1| hypothetical protein PANDA_001093 [Ailuropoda melanoleuca]
Length = 332
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 265 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 322
Query: 102 KNCKHRW 108
C +RW
Sbjct: 323 NECGNRW 329
>gi|16923938|ref|NP_476439.1| transcription elongation factor A protein 2 [Rattus norvegicus]
gi|28380169|sp|Q63799.1|TCEA2_RAT RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Protein S-II-T1; AltName: Full=Testis-specific
S-II; AltName: Full=Transcription elongation factor S-II
protein 2; AltName: Full=Transcription elongation factor
TFIIS.l
gi|712842|dbj|BAA02310.1| transcription elongation factor S-II [Rattus sp.]
Length = 299
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|6678235|ref|NP_033352.1| transcription elongation factor A protein 2 [Mus musculus]
gi|28380213|sp|Q9QVN7.2|TCEA2_MOUSE RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Protein S-II-T1; AltName: Full=Testis-specific
S-II; AltName: Full=Transcription elongation factor S-II
protein 2; AltName: Full=Transcription elongation factor
TFIIS.l
gi|2055284|dbj|BAA19752.1| S-II-T1 [Mus musculus]
gi|5381259|dbj|BAA82313.1| transcription elongation factor [Mus musculus]
gi|127798625|gb|AAH49617.2| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|127799183|gb|AAH65786.2| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|187951073|gb|AAI38506.1| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|187953941|gb|AAI38505.1| Transcription elongation factor A (SII), 2 [Mus musculus]
Length = 299
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>gi|242017625|ref|XP_002429288.1| transcription elongation factor S-II, putative [Pediculus humanus
corporis]
gi|212514184|gb|EEB16550.1| transcription elongation factor S-II, putative [Pediculus humanus
corporis]
Length = 289
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 237 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 286
>gi|297282476|ref|XP_001102747.2| PREDICTED: transcription elongation factor A protein 3-like isoform
2, partial [Macaca mulatta]
gi|402853350|ref|XP_003891359.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Papio anubis]
Length = 105
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 38 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 95
Query: 102 KNCKHRW 108
C +RW
Sbjct: 96 NECGNRW 102
>gi|308496575|ref|XP_003110475.1| CRE-RPB-9 protein [Caenorhabditis remanei]
gi|308243816|gb|EFO87768.1| CRE-RPB-9 protein [Caenorhabditis remanei]
Length = 143
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPY---VCNMESRVKIKRKQPLSKKEIQP 54
++FCP C ML P D+ SR +SC C + N V + +I
Sbjct: 34 IKFCPECNNML---YPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVA 90
Query: 55 IFTQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE C C KAV+ + QT+ A+E M ++Y+CA C+HRW E
Sbjct: 91 DIIHDPTL--PKTEEHACSKCGKRKAVFFQAQTKKAEEEMRLYYVCA--YCQHRWTE 143
>gi|296207010|ref|XP_002750408.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Callithrix jacchus]
gi|332807943|ref|XP_001165502.2| PREDICTED: transcription elongation factor A protein 3-like isoform
2, partial [Pan troglodytes]
Length = 75
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 8 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 65
Query: 102 KNCKHRW 108
C +RW
Sbjct: 66 NECGNRW 72
>gi|441639245|ref|XP_003280185.2| PREDICTED: transcription elongation factor A protein 2 [Nomascus
leucogenys]
Length = 443
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 376 KEIRKTMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 433
Query: 102 KNCKHRW 108
C +RW
Sbjct: 434 NECGNRW 440
>gi|41350335|ref|NP_003187.1| transcription elongation factor A protein 3 [Homo sapiens]
gi|397478949|ref|XP_003810796.1| PREDICTED: transcription elongation factor A protein 3 [Pan
paniscus]
gi|28380172|sp|O75764.2|TCEA3_HUMAN RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3;
AltName: Full=Transcription elongation factor TFIIS.h
gi|27469901|gb|AAH41613.1| Transcription elongation factor A (SII), 3 [Homo sapiens]
gi|158261567|dbj|BAF82961.1| unnamed protein product [Homo sapiens]
gi|167773999|gb|ABZ92434.1| transcription elongation factor A (SII), 3 [synthetic construct]
gi|306921457|dbj|BAJ17808.1| transcription elongation factor A (SII), 3 [synthetic construct]
gi|410220416|gb|JAA07427.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
gi|410263304|gb|JAA19618.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
gi|410328351|gb|JAA33122.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
Length = 348
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>gi|426328285|ref|XP_004024930.1| PREDICTED: transcription elongation factor A protein 3 [Gorilla
gorilla gorilla]
Length = 327
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 260 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 317
Query: 102 KNCKHRW 108
C +RW
Sbjct: 318 NECGNRW 324
>gi|332023706|gb|EGI63930.1| Transcription elongation factor S-II [Acromyrmex echinatior]
Length = 288
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y+++QTRSADEPM+ F +C C +RW
Sbjct: 236 QLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLC--NECGNRW 285
>gi|321466977|gb|EFX77969.1| hypothetical protein DAPPUDRAFT_53771 [Daphnia pulex]
Length = 299
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 44 KQPLSKKEIQPIFTQDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANK 102
+Q +K+ I Q A ++G QT++ C C Y+++QTRSADEPM+ F +C
Sbjct: 235 RQKFTKESIND--AQLATVQGTQTDLLKCGKCGKRNCTYNQVQTRSADEPMTTFVLC--N 290
Query: 103 NCKHRW 108
C +RW
Sbjct: 291 ACGNRW 296
>gi|148675493|gb|EDL07440.1| transcription elongation factor A (SII), 2 [Mus musculus]
Length = 298
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 231 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 288
Query: 102 KNCKHRW 108
C +RW
Sbjct: 289 NECGNRW 295
>gi|119615454|gb|EAW95048.1| transcription elongation factor A (SII), 3, isoform CRA_a [Homo
sapiens]
Length = 79
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 12 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 69
Query: 102 KNCKHRW 108
C +RW
Sbjct: 70 NECGNRW 76
>gi|440894939|gb|ELR47257.1| DNA-directed RNA polymerase II subunit RPB9, partial [Bos grunniens
mutus]
Length = 127
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 16 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 75
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 76 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 127
>gi|351700633|gb|EHB03552.1| Transcription elongation factor A protein 3 [Heterocephalus glaber]
Length = 343
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QT SADEPM+ F +C
Sbjct: 276 RELRNAMTQEAIREHQMAKTSGTNTDLLQCGKCKKKNCTYNQVQTLSADEPMTTFVLC-- 333
Query: 102 KNCKHRW 108
C HRW
Sbjct: 334 NECGHRW 340
>gi|322369052|ref|ZP_08043619.1| DNA-directed RNA polymerase subunit M2 [Haladaptatus
paucihalophilus DX253]
gi|320551783|gb|EFW93430.1| DNA-directed RNA polymerase subunit M2 [Haladaptatus
paucihalophilus DX253]
Length = 109
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M++ S+ C C + + ++ + I T+
Sbjct: 1 MQFCDECGSMMR------SMGSKMVCTNDDCQATVAKDEERAAEFVSTEAQDDSDVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ A EG T +VTC C HG A Y QT SADEP + F+ C K C +RW E
Sbjct: 55 EGANFEGKPTANDVTCEECGHGVAWYTIKQTGSADEPPTRFFKC--KECGYRWRE 107
>gi|448935448|gb|AGE58998.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus OR0704.2.2]
Length = 180
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 65 PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P +TC CK K Y+E+QTRSADEPM++F C C RW +
Sbjct: 137 PDGMLTCSKCKSRKTSYYEMQTRSADEPMTVFAKC--HVCGSRWKQ 180
>gi|19115617|ref|NP_594705.1| DNA-directed RNA polymerase II complex subunit Rpb9
[Schizosaccharomyces pombe 972h-]
gi|15214253|sp|O74635.1|RPB9_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II 13.2 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit 9
gi|256599723|pdb|3H0G|I Chain I, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599735|pdb|3H0G|U Chain U, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|18026867|gb|AAL55660.1|AF237418_2 RNA polymerase II specific subunit Rpb9 [Schizosaccharomyces pombe]
gi|3582120|dbj|BAA33021.1| RNA polymerase II subunit 9 [Schizosaccharomyces pombe]
gi|6723910|emb|CAB66313.1| DNA-directed RNA polymerase II complex subunit Rpb9
[Schizosaccharomyces pombe]
Length = 113
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++C C ML +DR R +C C Y + + K+ R + S + DA
Sbjct: 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYS-EIAATSKVYRHELQSSNVENTTVSHDA 62
Query: 61 MME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+ P+++ CP C +AV+++ +R D M++ Y+C +
Sbjct: 63 STDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVH 105
>gi|3288459|emb|CAA11393.1| transcription elongation factor TFIIS.h [Homo sapiens]
Length = 320
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 253 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 310
Query: 102 KNCKHRW 108
C +RW
Sbjct: 311 NECGNRW 317
>gi|91834|pir||PS0180 transcription elongation factor S-II-related protein L122, hepatic
- mouse (fragment)
Length = 289
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 222 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 279
Query: 102 KNCKHRW 108
C +RW
Sbjct: 280 NECGNRW 286
>gi|388856152|emb|CCF50332.1| probable DNA-directed RNA polymerase II 14.5 kDa polypeptide
[Ustilago hordei]
Length = 133
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVK-IKRKQPLSKKEIQPIFTQD 59
+ FC C +L E+ + ++C C Y ESR + R +S + QP D
Sbjct: 4 LHFCAECNNLLYPEVDRTNHVLLYACRNCNY--QQESRESLVYRNDLMSVTKEQPGIV-D 60
Query: 60 AMMEGPQT----EVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
+M+ P ++ CP C HG+AV + Q++ M +FY+C
Sbjct: 61 NLMKDPTLRRTHDLNCPDCGHGEAVLFQDQSKRIMNRMILFYVC 104
>gi|414587740|tpg|DAA38311.1| TPA: hypothetical protein ZEAMMB73_970745 [Zea mays]
Length = 906
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 65 PQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
P+T+ V C C HG+AV+ + R +E M++F++C + +C HRW E
Sbjct: 861 PRTKIVRCNLCGHGEAVFFQAAAR-GEEGMTLFFVCCSPDCGHRWRE 906
>gi|397773017|ref|YP_006540563.1| transcription factor S [Natrinema sp. J7-2]
gi|397682110|gb|AFO56487.1| transcription factor S [Natrinema sp. J7-2]
Length = 112
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---- 56
M+FC CG+M++ R R C C S +R+ E Q
Sbjct: 4 MQFCDDCGSMMKA------RGDRMVCT--NDDCGAASERDREREDAFVTTESQTDGDVIE 55
Query: 57 -TQDAMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+++A EG T+V C C +A Y QT SADEP + F+ C +CK++W E
Sbjct: 56 SSEEANFEGKPKATDVVCDECGAEEAWYTLKQTASADEPPTRFFKCT--DCKNKWRE 110
>gi|5453930|ref|NP_006224.1| DNA-directed RNA polymerase II subunit RPB9 [Homo sapiens]
gi|110625757|ref|NP_081535.1| DNA-directed RNA polymerase II subunit RPB9 [Mus musculus]
gi|157819855|ref|NP_001099714.1| DNA-directed RNA polymerase II subunit RPB9 [Rattus norvegicus]
gi|329663932|ref|NP_001192333.1| DNA-directed RNA polymerase II subunit RPB9 isoform 1 [Sus scrofa]
gi|388453753|ref|NP_001253556.1| DNA-directed RNA polymerase II subunit RPB9 [Macaca mulatta]
gi|73947834|ref|XP_853642.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 isoform 2
[Canis lupus familiaris]
gi|114676836|ref|XP_001162834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Pan
troglodytes]
gi|126329203|ref|XP_001364276.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Monodelphis domestica]
gi|291412040|ref|XP_002722276.1| PREDICTED: DNA directed RNA polymerase II polypeptide I
[Oryctolagus cuniculus]
gi|297704520|ref|XP_002829145.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Pongo
abelii]
gi|301771109|ref|XP_002920967.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Ailuropoda melanoleuca]
gi|332262136|ref|XP_003280122.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 isoform 1
[Nomascus leucogenys]
gi|338710044|ref|XP_003362303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Equus
caballus]
gi|344307363|ref|XP_003422351.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Loxodonta africana]
gi|348562955|ref|XP_003467274.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Cavia
porcellus]
gi|390478858|ref|XP_002762104.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Callithrix
jacchus]
gi|392344096|ref|XP_003748866.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Rattus
norvegicus]
gi|395846986|ref|XP_003796169.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Otolemur garnettii]
gi|397490389|ref|XP_003816187.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Pan
paniscus]
gi|402905255|ref|XP_003915438.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Papio
anubis]
gi|403292852|ref|XP_003937444.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Saimiri
boliviensis boliviensis]
gi|410983265|ref|XP_003997961.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Felis
catus]
gi|426242739|ref|XP_004015228.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Ovis aries]
gi|548702|sp|P36954.1|RPB9_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II subunit I; AltName:
Full=RNA polymerase II 14.5 kDa subunit; Short=RPB14.5
gi|46396569|sp|P60899.1|RPB9_PIG RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II subunit I; AltName:
Full=RNA polymerase II 14.5 kDa subunit; Short=RPB14.5
gi|46396717|sp|P60898.1|RPB9_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II subunit I; AltName:
Full=RNA polymerase II 14.5 kDa subunit; Short=RPB14.5
gi|397150|emb|CAA80649.1| RNA Polymerase II subunit 14.5 kD [Homo sapiens]
gi|1905901|gb|AAB51181.1| HUMAN DNA-DIRECTED RNA POLYMERASE II 14.5 KD SUBUNIT [Homo sapiens]
gi|16877749|gb|AAH17112.1| Polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa [Homo
sapiens]
gi|24528347|emb|CAD56045.1| RNA polymerase II polypeptide I, 14.5kDa [Sus scrofa]
gi|38541317|gb|AAH62812.1| Polymerase (RNA) II (DNA directed) polypeptide I [Mus musculus]
gi|45709621|gb|AAH67794.1| Polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa [Homo
sapiens]
gi|123993077|gb|ABM84140.1| polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
[synthetic construct]
gi|124000067|gb|ABM87542.1| polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
[synthetic construct]
gi|149056348|gb|EDM07779.1| polymerase (RNA) II (DNA directed) polypeptide I (predicted),
isoform CRA_c [Rattus norvegicus]
gi|189053351|dbj|BAG35139.1| unnamed protein product [Homo sapiens]
gi|208967088|dbj|BAG73558.1| polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa
[synthetic construct]
gi|281354308|gb|EFB29892.1| hypothetical protein PANDA_009792 [Ailuropoda melanoleuca]
gi|296477853|tpg|DAA19968.1| TPA: DNA-directed RNA polymerase II subunit RPB9 [Bos taurus]
gi|351706702|gb|EHB09621.1| DNA-directed RNA polymerase II subunit RPB9 [Heterocephalus glaber]
gi|355703463|gb|EHH29954.1| DNA-directed RNA polymerase II subunit RPB9 [Macaca mulatta]
gi|355755748|gb|EHH59495.1| DNA-directed RNA polymerase II subunit RPB9 [Macaca fascicularis]
gi|384939388|gb|AFI33299.1| DNA-directed RNA polymerase II subunit RPB9 [Macaca mulatta]
gi|410218188|gb|JAA06313.1| polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa [Pan
troglodytes]
gi|431918557|gb|ELK17775.1| DNA-directed RNA polymerase II subunit RPB9 [Pteropus alecto]
gi|432100951|gb|ELK29301.1| DNA-directed RNA polymerase II subunit RPB9 [Myotis davidii]
Length = 125
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|126465542|ref|YP_001040651.1| DNA-directed RNA polymerase subunit M [Staphylothermus marinus F1]
gi|126014365|gb|ABN69743.1| DNA-directed RNA polymerase, subunit M [Staphylothermus marinus F1]
Length = 104
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 24 FSCPACPY-VCNMESRVKIKR---KQPLSKKEIQPIFTQDAMMEG-PQT-EVTCPACKHG 77
C C Y V E +K+ R K S KE + ++ + G P T EVTCP C +
Sbjct: 12 LVCTRCGYRVKATEKDLKLYRISVKIEHSNKEKTVVVDEEERLRGLPITREVTCPKCGYH 71
Query: 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A Y +QTR+ADEP + FY C + C + W E
Sbjct: 72 EAYYWIVQTRAADEPPTRFYKC--RRCGYVWRE 102
>gi|448459682|ref|ZP_21596732.1| transcription termination factor Tfs [Halorubrum lipolyticum DSM
21995]
gi|445808134|gb|EMA58208.1| transcription termination factor Tfs [Halorubrum lipolyticum DSM
21995]
Length = 109
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSC--PACPYVCNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FC CG+M+ + R C C + + + + + + I T+
Sbjct: 1 MQFCDDCGSMM------VSRDGEMVCQNDDCGATTERDEALAAEFESTTEQTGDEVIETE 54
Query: 59 D-AMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ A EG T +V C C HG+A Y QT +ADEP + F+ C K C RW
Sbjct: 55 EGANFEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKC--KECGRRW 105
>gi|115496356|ref|NP_001069797.1| DNA-directed RNA polymerase II subunit RPB9 [Bos taurus]
gi|110287948|sp|Q32P73.1|RPB9_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II subunit I
gi|81294251|gb|AAI08234.1| Polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa [Bos
taurus]
Length = 125
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gi|410958118|ref|XP_003985667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Felis
catus]
Length = 123
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRV--------KIKRKQPLSK 49
++FCP CG++L LP ++ +C C + V + E +V K+ P++
Sbjct: 14 LDFCPDCGSIL--PLPGVE--DTVTCIRCGFSVDVRDFEQKVVRTTFVFHKVGTAVPVAA 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
E P F +GP + C C H YH Q RSADE ++FY C +
Sbjct: 70 DE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTS 114
>gi|195330831|ref|XP_002032106.1| GM23695 [Drosophila sechellia]
gi|194121049|gb|EDW43092.1| GM23695 [Drosophila sechellia]
Length = 120
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQPLSKKEIQPIFTQ-- 58
FCP+CG++L P + C C + ++ S K + + + +F +
Sbjct: 10 FCPSCGSIL----PELQVKGNVICCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 59 ---DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ +GP E CP C H K Y LQ RSADE ++F+ C CK + +E
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESE 118
>gi|74210421|dbj|BAE23395.1| unnamed protein product [Mus musculus]
Length = 273
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 206 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 263
Query: 102 KNCKHRW 108
C +RW
Sbjct: 264 NECGNRW 270
>gi|297526173|ref|YP_003668197.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
gi|297255089|gb|ADI31298.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 24 FSCPACPY-VCNMESRVKIKR---KQPLSKKEIQPIFTQDAMMEG-PQT-EVTCPACKHG 77
C C Y + E +K+ R K S KE + ++ + G P T EVTCP C +
Sbjct: 12 LVCTRCGYKIKATEKDLKLYRISVKIEHSNKEKTTVVDEEERLRGLPITREVTCPRCGYH 71
Query: 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+A Y +QTR+ADEP + FY C + C + W E
Sbjct: 72 EAYYWVVQTRAADEPPTRFYKC--RRCGYVWRE 102
>gi|124511836|ref|XP_001349051.1| transcription elongation factor s-II, putative [Plasmodium
falciparum 3D7]
gi|23498819|emb|CAD50896.1| transcription elongation factor s-II, putative [Plasmodium
falciparum 3D7]
Length = 403
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E C CK +YH+LQTRS+DEPM+ F C C +RW
Sbjct: 363 EFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCL--KCNNRW 401
>gi|4217|emb|CAA24928.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 128
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + + Q ++ Q A +E T+ TC CK K Y++LQTRSADEP++ F C
Sbjct: 61 KQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC-- 118
Query: 102 KNCKHRW 108
+ C +RW
Sbjct: 119 EACGNRW 125
>gi|328876868|gb|EGG25231.1| RNA polymerase II elongation factor [Dictyostelium fasciculatum]
Length = 325
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
C CK K Y +LQTRSADEP++ F C NC +RW
Sbjct: 287 CGKCKQRKCTYFQLQTRSADEPLTTFVTCV--NCNNRW 322
>gi|156102921|ref|XP_001617153.1| transcription elongation factor [Plasmodium vivax Sal-1]
gi|148806027|gb|EDL47426.1| transcription elongation factor, putative [Plasmodium vivax]
Length = 435
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
E C CK + VYH+LQTRS+DEPM+ F C C +RW
Sbjct: 395 EFQCFKCKGYETVYHQLQTRSSDEPMTTFVTCL--KCNNRW 433
>gi|448340694|ref|ZP_21529664.1| transcription factor S [Natrinema gari JCM 14663]
gi|445629634|gb|ELY82910.1| transcription factor S [Natrinema gari JCM 14663]
Length = 109
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---- 56
M+FC CG+M++ R R C C S +R+ E Q
Sbjct: 1 MQFCDDCGSMMKA------RGDRMVCT--NDDCGAASERDREREDAFVTTESQTDGDVIE 52
Query: 57 -TQDAMMEGP--QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+++A EG T+V C C +A Y QT SADEP + F+ C +CK++W E
Sbjct: 53 SSEEANFEGKPKATDVVCDECGAEEAWYTLKQTASADEPPTRFFKCT--DCKNKWRE 107
>gi|388548782|gb|AFK65984.1| hypothetical protein OLVG_00230 [Ostreococcus lucimarinus virus
OlV6]
Length = 171
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 27 PACPYVCNMESRV-KIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQ 85
P PY +E ++ K RK L+K+ M + TC CK K Y++LQ
Sbjct: 100 PDGPYAKKIEEKIHKDLRKDYLTKE-----------MNNTEGFFTCGRCKSKKTSYYQLQ 148
Query: 86 TRSADEPMSIFYMCANKNCKHRW 108
TRSADEPM+ F C C W
Sbjct: 149 TRSADEPMTTFVTCH--QCDRNW 169
>gi|195572682|ref|XP_002104324.1| GD18505 [Drosophila simulans]
gi|194200251|gb|EDX13827.1| GD18505 [Drosophila simulans]
Length = 120
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQPLSKKEIQPIFTQ-- 58
FCP+CG++L P + C C + ++ S K + + + +F +
Sbjct: 10 FCPSCGSIL----PELQVKGNVFCCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 59 ---DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
++ +GP E CP C H K Y LQ RSADE ++F+ C CK + +E
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESE 118
>gi|426222790|ref|XP_004005565.1| PREDICTED: transcription elongation factor A protein 3 [Ovis aries]
Length = 375
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 262 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 319
Query: 102 KNCKHRW 108
C +RW
Sbjct: 320 NECGNRW 326
>gi|50543398|ref|XP_499865.1| YALI0A08151p [Yarrowia lipolytica]
gi|49645730|emb|CAG83791.1| YALI0A08151p [Yarrowia lipolytica CLIB122]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLS--------KKEIQP 54
FC CG ++ +L C A N + + + P + + ++
Sbjct: 9 FCTDCGNLMDTQLNASKDLECDQCDASFPSANTTNLTVVTKSAPDAFPSALRSKRSVVKT 68
Query: 55 IFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
EG + CP C H + YH LQ RSADE ++FY C + K R N
Sbjct: 69 SLAAGEADEGAIIKEKCPQCGHDEMQYHTLQLRSADEGATVFYTCTKCHYKFRTN 123
>gi|47210619|emb|CAF93250.1| unnamed protein product [Tetraodon nigroviridis]
Length = 147
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPL--SKKEIQPI 55
+ FCP CG +L P CP C + V + + +I+ L ++K +
Sbjct: 20 LNFCPECGNIL----PPPGLQDTVRCPRCSFSIPVAEFDGQ-QIRSTVVLNPAEKSAAVV 74
Query: 56 FTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+D+ ++GP + C C VYH Q RSADE ++F+ C +C+ R E
Sbjct: 75 EEEDSDLQGPVIDRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCV--HCRRRTLE 127
>gi|399215957|emb|CCF72645.1| unnamed protein product [Babesia microti strain RI]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 40 KIKRKQPLSKKEI----QPIFTQDAMMEGPQT--EVTCPACKHGKAVYHELQTRSADEPM 93
K+KRK+ + KE Q + ++ +T + TC CK K VY ++QTRS+DEPM
Sbjct: 226 KLKRKREMVLKESMLACQSDWAVKNILLSSKTPGQFTCFKCKQSKTVYTQVQTRSSDEPM 285
Query: 94 SIFYMCANKNCKHRW 108
+ F C C++RW
Sbjct: 286 TTFVTCL--VCQNRW 298
>gi|355723564|gb|AES07932.1| transcription elongation factor A , 3 [Mustela putorius furo]
Length = 324
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 258 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 315
Query: 102 KNCKHRW 108
C +RW
Sbjct: 316 NECGNRW 322
>gi|332245855|ref|XP_003272067.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Nomascus
leucogenys]
Length = 126
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FC CG++L P +C C + N+ E +V ++ P+S
Sbjct: 17 LDFCSDCGSVL----PLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSV 72
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E +GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 73 EE-------GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 123
Query: 110 E 110
E
Sbjct: 124 E 124
>gi|256052454|ref|XP_002569783.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|350646250|emb|CCD59084.1| DNA-directed RNA polymerase I, putative [Schistosoma mansoni]
Length = 236
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 3 FCPTCGTMLQYELPHMDR------------------PSRFSCPA----CPYVCNMESRVK 40
FC CGT+LQ++L +D + F+ A N E K
Sbjct: 104 FCYVCGTLLQHKLEVIDLLVCRKCKTSTCMHWFSNMDATFNTEAKSSKIGQFNNDEGAKK 163
Query: 41 IKRKQPLSKKEIQPIF---TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFY 97
I R + K+ ++ F T + +GP C C + + Y +QTRSADE ++ Y
Sbjct: 164 ILRSEIALKEALESQFENSTSQSTFDGPSIRKECAYCGNDRMTYVTVQTRSADEGQTVIY 223
Query: 98 MCA 100
C
Sbjct: 224 TCT 226
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.133 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,629,501,281
Number of Sequences: 23463169
Number of extensions: 52300536
Number of successful extensions: 124272
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 121764
Number of HSP's gapped (non-prelim): 1941
length of query: 110
length of database: 8,064,228,071
effective HSP length: 78
effective length of query: 32
effective length of database: 6,234,100,889
effective search space: 199491228448
effective search space used: 199491228448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)