BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033869
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RFSC CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T +CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P KE+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKV-TNRKYP-KLKEVDDVLGGAA 57
Query: 61 MMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
E T CP C+H +A + +LQTRSADEPM+ FY C N C HRW +
Sbjct: 58 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP CG L E R RF+C CPYV N+ +V RK P K+ + A
Sbjct: 2 LLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYPKLKEVDDELGGAAA 58
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
T CP C+H +A + +LQTR ADEPM+ FY C N C HRW +
Sbjct: 59 WENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT-QD 59
M+FCPTCG L + R + F C CPY + + + ++KE+ + ++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 57
Query: 60 AMMEGPQTEVTC--PACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
A QTEVTC C + +A + +LQ RSADEPMS FY C CK +W E
Sbjct: 58 AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT--KCKFQWRE 108
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
+ FCP+C ML + +C +CPY +E ++I ++ L +KE+ +
Sbjct: 2 LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLGG-G 58
Query: 61 MMEGPQTEVTCP---ACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QT+ CP C A + +LQ RSADEPM+ FY C NC HRW E
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKE 109
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY---VCNMESRVKIKRKQPLSKKEIQPIFT 57
M+FCP CG ++ LP R + C +C Y + R K KQ + K + I
Sbjct: 1 MKFCPKCGNLM---LPDRKRKV-WVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVV 56
Query: 58 QDAMMEG-PQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ ++ P T++TCP C + A + E+QTR+ DEP +IFY C C H W
Sbjct: 57 IEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCT--KCGHTW 106
>sp|P36958|RPB9_DROME DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila
melanogaster GN=RpII15 PE=2 SV=2
Length = 129
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE---IQPIFT 57
+ FC C ML + ++ ++C C Y +S K E I P
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 58 QDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P+TE CP C H +AV+ + QTR A+E M ++Y+C N+NC HRW E
Sbjct: 78 SDPTL--PRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoM PE=3 SV=2
Length = 104
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRK--QPLSKKEIQPIFTQ 58
MEFCP CG ++ P +F C C Y ++ ++K K + + + KE IFT
Sbjct: 1 MEFCPKCGAVM---FPS---EGKFKC-QCGYEKDITDKLKDKYRVSEEVEAKET-IIFTG 52
Query: 59 DAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D + P T V CP C + +A + QTR ADE + F+ C CKH W E
Sbjct: 53 DDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCT--RCKHTWRE 102
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYV--CNMESRVKIKRKQPL-SKKEIQPIFT 57
++FCP C ++ LP + + C C Y E + + K+ L +KKE +
Sbjct: 2 VKFCPKCNNLM---LP---KDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 58 QDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ + P T + CP C H +A + QTR ADEP + FY C K C H W E
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1 MEFCPTCGTMLQYELPHMDRP-SRFSCPACPYV-CNMESRVKIKRKQPLSKKEIQPIFTQ 58
M+FCP CG+M+ +P + + + C C Y+ + KI S KE +
Sbjct: 1 MKFCPKCGSMM---MPRKENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLES 57
Query: 59 DAMMEGPQTE--VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
D G Q ++CP+C + +A + LQTRSADEP + FY C C W E
Sbjct: 58 DMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCT--KCGKVWRE 109
>sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoM PE=3 SV=1
Length = 103
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
MEFCP C +++ Y+ + C C Y + ++ K +K+++ P+ +
Sbjct: 1 MEFCPKCKSLMIYQ------GDKLVCRKCGYEKEADDSEELVIKVERNKEDV-PVIEGEN 53
Query: 61 MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ P T+ CPAC H +A + Q R+ADE F+ C C W E
Sbjct: 54 LKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCT--KCGKTWRE 101
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + +C C + N+ E +V K+ PLS
Sbjct: 14 LDFCPDCGSVL--PLPGVQ--DAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSM 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E P F +GP + C C H YH Q RSADE ++FY C NCK +
Sbjct: 70 EE-GPEF------QGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus
GN=Znrd1 PE=2 SV=1
Length = 123
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FCP CG++L LP + C C + ++ E +V K+ PLS
Sbjct: 14 LDFCPDCGSVL--PLPGIQ--DTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSV 69
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
E ++GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 70 DE-------GPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCI--NCKFQEK 120
Query: 110 E 110
E
Sbjct: 121 E 121
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
Q A ++G +T++ C CK Y++LQTRSADEPM+ F MC C +RW
Sbjct: 261 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRW 310
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 56 FTQDAMMEGPQTEVT-----CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
F +A M G E T C CK K Y +LQTRSADEP + F C K C +RW
Sbjct: 259 FNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRW 316
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KE++ T++A+ E G QT++ TC CK Y ++QTRSADEPM+ F +C
Sbjct: 234 KEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC-- 291
Query: 102 KNCKHRW 108
C +RW
Sbjct: 292 NECGNRW 298
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 233 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 290
Query: 102 KNCKHRW 108
C +RW
Sbjct: 291 NECGNRW 297
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ F +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 280 RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 337
Query: 102 KNCKHRW 108
C +RW
Sbjct: 338 NECGNRW 344
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 282 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 339
Query: 102 KNCKHRW 108
C +RW
Sbjct: 340 NECGNRW 346
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KEI+ T++A+ E G QT++ TC C+ Y ++QTRS+DEPM+ + +C
Sbjct: 232 KEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVC-- 289
Query: 102 KNCKHRW 108
C +RW
Sbjct: 290 NECGNRW 296
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME-------GPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ TQ+A+ E G T++ C CK Y+++QTRSADEPM+ F +C
Sbjct: 281 RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-- 338
Query: 102 KNCKHRW 108
C +RW
Sbjct: 339 NECGNRW 345
>sp|O74635|RPB9_SCHPO DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb9 PE=1 SV=1
Length = 113
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDA 60
++C C ML +DR R +C C Y + + K+ R + S + DA
Sbjct: 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYS-EIAATSKVYRHELQSSNVENTTVSHDA 62
Query: 61 MME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+ P+++ CP C +AV+++ +R D M++ Y+C +
Sbjct: 63 STDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVH 105
>sp|P60899|RPB9_PIG DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I
PE=3 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P60898|RPB9_MOUSE DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus
GN=Polr2i PE=2 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P36954|RPB9_HUMAN DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens
GN=POLR2I PE=1 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|Q32P73|RPB9_BOVIN DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I
PE=2 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIF---T 57
+ FC C ML + +R ++C C Y ++ K E+ I +
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 58 QDAMMEGPQTEVT-CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
QD + P+TE C C H +AV+ + + A++ M ++Y+C +C HRW E
Sbjct: 74 QDPTL--PRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FC CG++L P +C C + N+ E +V ++ P+S
Sbjct: 17 LDFCSDCGSVL----PLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSV 72
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E +GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 73 EE-------GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 123
Query: 110 E 110
E
Sbjct: 124 E 124
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FC CG++L P +C C + N+ E +V ++ P+S
Sbjct: 17 LDFCSDCGSVL----PLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSV 72
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E +GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 73 EE-------GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 123
Query: 110 E 110
E
Sbjct: 124 E 124
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens
GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM---ESRV--------KIKRKQPLSK 49
++FC CG++L P +C C + N+ E +V ++ P+S
Sbjct: 17 LDFCSDCGSVL----PLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSV 72
Query: 50 KEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
+E +GP + CP C H YH Q RSADE ++FY C NCK +
Sbjct: 73 EE-------GPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCT--NCKFQEK 123
Query: 110 E 110
E
Sbjct: 124 E 124
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus
GN=Znrd1 PE=3 SV=1
Length = 123
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM-ESRVKIKRKQPLSKK--EIQPIFT 57
++FCP CG++L LP + CP C + ++ + K+ + + K + P+
Sbjct: 14 LDFCPDCGSVL--PLPGVQ--DTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSV 69
Query: 58 QDA-MMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
+ +GP + C C H Y+ Q RSADE ++FY C NCK + E
Sbjct: 70 DEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCI--NCKFQEKE 121
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 3 FCPTCGTMLQYELPHMDRPSRFSCPACP--YVCNMESRVKIKRKQP---------LSKKE 51
FC CG +L E P+ S C C Y + S +K+ K
Sbjct: 9 FCLDCGDLL--ENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSV 66
Query: 52 IQPIFTQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
++ ++ + +G + CP C + + YH LQ RSADE ++FY C + K R N
Sbjct: 67 VKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTN 124
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 44 KQPLSKKEIQPIFT-QDAMMEGPQTE-VTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
KQ + + Q ++ Q A +E T+ TC CK K Y++LQTRSADEP++ F C
Sbjct: 242 KQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC-- 299
Query: 102 KNCKHRW 108
+ C +RW
Sbjct: 300 EACGNRW 306
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
C ACK+ +++LQTRSADEPM+ FY+C N
Sbjct: 134 CYACKNTSYHFYQLQTRSADEPMTTFYICKN 164
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 43 RKQPLSKKEIQPIF-TQDAMMEGPQTEV-TCPACKHGKAVYHELQTRSADEPMSIFYMCA 100
R++ +K E + +F Q A + T++ TC CK K Y+++QTRSADEPM+ F C
Sbjct: 225 RRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECT 284
Query: 101 NKNCKHRW 108
C +RW
Sbjct: 285 --VCGNRW 290
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 50 KEIQPIFTQDAMME--------GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCAN 101
+E++ FT++A++E P C C Y +LQTRS+DEPM+ F C
Sbjct: 241 REMRDKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCL- 299
Query: 102 KNCKHRW 108
C +RW
Sbjct: 300 -ECGNRW 305
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109
V CP C + + QTRSADEPM++F MC+ C RW
Sbjct: 53 VKCPGCGSRRVHALQRQTRSADEPMTLFAMCS--ECGKRWT 91
>sp|Q8SQU1|RPB9_ENCCU DNA-directed RNA polymerase II subunit RPB9 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB9 PE=3 SV=1
Length = 108
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 3 FCPTCGTMLQYELPHMDRPSRF-SCPACPYVCNMES-RVKIKRKQPLSKKEIQPIFTQDA 60
FC C +L P D + F +C C ++ +S R+ +K +P K ++ +D
Sbjct: 5 FCKECNNLL---YPKEDDNTLFLACKNCEHIQEAKSHRLYVKNFRP--KHASIELYARDL 59
Query: 61 MME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+ + P ++ C C K +Y + + D +SIFY+C C H W
Sbjct: 60 VQDPTLPSVKINCGNCGFNKGLYFQPRGGEEDVALSIFYLCC--RCYHLW 107
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 15 LPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMM----EGPQTEVT 70
L ++ PS M + ++ P+ + E Q I ++ + E + +
Sbjct: 40 LTTIENPSHSEQDNFRRAVTMVKQNQLGWGHPIFQPEQQKISEENDFITCPYEVSEGVLR 99
Query: 71 CPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110
C C K ++ QTRS DEP +IF C+ NCK RW E
Sbjct: 100 CGKCDCTKILWFSKQTRSMDEPTTIFASCS--NCKTRWTE 137
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q + E CP CK Y E+QTR+ DEP +IF C K C H +
Sbjct: 192 SQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIF--CTCKKCGHEF 241
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q + E CP CK Y E+QTR+ DEP +IF C K C H +
Sbjct: 192 SQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIF--CTCKKCGHEF 241
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q + E CP CK Y E+QTR+ DEP +IF C K C H +
Sbjct: 192 SQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIF--CTCKKCGHEF 241
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q + E CP CK Y E+QTR+ DEP +IF C K C H +
Sbjct: 192 SQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIF--CTCKKCGHEF 241
>sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1
Length = 119
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 63 EGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMC 99
E E CP C + +H LQ RSADE ++FY C
Sbjct: 72 EAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC 108
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 57 TQDAMMEGPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108
+Q + E CP CK Y E+QTR+ DEP +I+ C K C H +
Sbjct: 192 SQQKVAEKTSQLYKCPNCKQRMCTYREVQTRALDEPSTIY--CTCKKCGHEF 241
>sp|P27999|RPB9_YEAST DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1
SV=1
Length = 122
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 1 MEFCPTCGTMLQYELPHMDRPSR---FSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFT 57
FC C ML P D+ + F C C YV S + + + + E +
Sbjct: 4 FRFCRDCNNML---YPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGV-V 59
Query: 58 QDAMME--GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKH 106
QD + P+++ CP C + V+ + Q R D M +F++C +C H
Sbjct: 60 QDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCL--SCSH 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,242,856
Number of Sequences: 539616
Number of extensions: 1290448
Number of successful extensions: 3302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3204
Number of HSP's gapped (non-prelim): 85
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)