Query 033869
Match_columns 110
No_of_seqs 148 out of 941
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_I DNA-directed RNA polyme 100.0 2E-45 6.9E-50 240.9 10.8 106 1-110 4-112 (113)
2 1twf_I B12.6, DNA-directed RNA 100.0 1.6E-43 5.6E-48 234.5 11.1 106 1-110 4-112 (122)
3 3qt1_I DNA-directed RNA polyme 100.0 5.9E-44 2E-48 239.4 3.4 106 1-110 24-132 (133)
4 1tfi_A Transcriptional elongat 99.9 3.6E-26 1.2E-30 129.4 5.4 42 66-109 7-48 (50)
5 1qyp_A RNA polymerase II; tran 99.9 6.8E-26 2.3E-30 131.7 5.5 48 61-110 7-55 (57)
6 3po3_S Transcription elongatio 99.8 5.5E-21 1.9E-25 133.4 2.6 42 66-109 135-176 (178)
7 1pqv_S STP-alpha, transcriptio 99.7 7.7E-19 2.6E-23 131.5 4.9 41 67-109 267-307 (309)
8 2k4x_A 30S ribosomal protein S 98.4 1.9E-07 6.4E-12 53.2 2.8 30 1-34 18-47 (55)
9 3j20_Y 30S ribosomal protein S 97.7 1.9E-05 6.5E-10 43.9 2.0 28 1-34 19-48 (50)
10 2fiy_A Protein FDHE homolog; F 97.1 0.0011 3.7E-08 49.4 5.9 75 2-109 183-264 (309)
11 2kn9_A Rubredoxin; metalloprot 96.3 0.017 5.9E-07 34.9 6.4 52 21-85 25-77 (81)
12 3cng_A Nudix hydrolase; struct 96.3 0.0046 1.6E-07 41.9 4.2 34 1-34 3-36 (189)
13 1yk4_A Rubredoxin, RD; electro 96.0 0.0095 3.2E-07 33.1 4.0 48 23-83 2-50 (52)
14 2v3b_B Rubredoxin 2, rubredoxi 96.0 0.01 3.6E-07 33.3 4.1 49 23-84 3-52 (55)
15 1e8j_A Rubredoxin; iron-sulfur 95.9 0.0076 2.6E-07 33.5 3.1 47 23-82 3-50 (52)
16 6rxn_A Rubredoxin; electron tr 95.6 0.0078 2.7E-07 32.6 2.3 40 23-82 4-44 (46)
17 1dx8_A Rubredoxin; electron tr 95.6 0.013 4.3E-07 34.6 3.4 50 22-84 6-56 (70)
18 4rxn_A Rubredoxin; electron tr 95.5 0.016 5.6E-07 32.4 3.6 49 23-84 3-52 (54)
19 1s24_A Rubredoxin 2; electron 95.3 0.017 5.9E-07 35.4 3.5 51 21-84 33-84 (87)
20 3a43_A HYPD, hydrogenase nicke 94.7 0.038 1.3E-06 36.4 4.0 17 21-37 68-84 (139)
21 3j21_g 50S ribosomal protein L 94.3 0.0078 2.7E-07 33.4 0.0 22 3-32 16-37 (51)
22 1k81_A EIF-2-beta, probable tr 93.8 0.086 2.9E-06 26.9 3.4 32 69-109 1-32 (36)
23 2kdx_A HYPA, hydrogenase/ureas 93.6 0.088 3E-06 33.5 4.1 32 21-81 71-103 (119)
24 1lko_A Rubrerythrin all-iron(I 93.6 0.03 1E-06 38.6 1.9 32 23-83 155-186 (191)
25 1gh9_A 8.3 kDa protein (gene M 93.5 0.038 1.3E-06 32.6 2.0 28 4-37 7-34 (71)
26 1pft_A TFIIB, PFTFIIBN; N-term 93.5 0.059 2E-06 29.1 2.6 29 2-34 6-35 (50)
27 3pwf_A Rubrerythrin; non heme 92.9 0.075 2.6E-06 36.1 3.0 33 21-83 136-168 (170)
28 3m7n_A Putative uncharacterize 92.8 0.07 2.4E-06 36.4 2.7 28 3-36 142-169 (179)
29 2ct7_A Ring finger protein 31; 92.6 0.072 2.5E-06 32.1 2.4 28 2-33 26-53 (86)
30 1vk6_A NADH pyrophosphatase; 1 92.5 0.072 2.4E-06 38.6 2.7 32 1-36 107-138 (269)
31 2pk7_A Uncharacterized protein 92.2 0.12 4E-06 30.2 2.8 32 2-37 9-40 (69)
32 2hf1_A Tetraacyldisaccharide-1 92.0 0.11 3.9E-06 30.2 2.7 32 2-37 9-40 (68)
33 2jr6_A UPF0434 protein NMA0874 92.0 0.12 4.1E-06 30.1 2.7 32 2-37 9-40 (68)
34 1vq8_Z 50S ribosomal protein L 91.9 0.063 2.1E-06 32.5 1.5 29 3-35 29-57 (83)
35 2akl_A PHNA-like protein PA012 91.9 0.086 2.9E-06 34.6 2.2 29 2-35 28-56 (138)
36 1qyp_A RNA polymerase II; tran 91.9 0.16 5.5E-06 28.1 3.1 32 3-34 17-54 (57)
37 2akl_A PHNA-like protein PA012 91.8 0.072 2.5E-06 34.9 1.8 28 69-109 28-55 (138)
38 2js4_A UPF0434 protein BB2007; 91.8 0.12 3.9E-06 30.3 2.5 32 2-37 9-40 (70)
39 1tfi_A Transcriptional elongat 91.6 0.17 5.9E-06 27.6 2.9 32 3-34 11-48 (50)
40 1x0t_A Ribonuclease P protein 91.4 0.096 3.3E-06 33.7 2.0 34 2-35 66-106 (120)
41 1wii_A Hypothetical UPF0222 pr 90.8 0.14 4.9E-06 31.1 2.3 31 4-34 26-58 (85)
42 1yuz_A Nigerythrin; rubrythrin 90.5 0.14 4.9E-06 35.6 2.4 32 21-82 169-200 (202)
43 4esj_A Type-2 restriction enzy 90.5 0.18 6.2E-06 36.3 2.9 34 2-37 35-70 (257)
44 2jny_A Uncharacterized BCR; st 90.2 0.22 7.6E-06 28.9 2.7 32 2-37 11-42 (67)
45 2k3r_A Ribonuclease P protein 90.1 0.12 4.1E-06 33.4 1.6 34 2-35 61-101 (123)
46 1dl6_A Transcription factor II 90.1 0.28 9.5E-06 27.5 2.9 29 2-34 12-41 (58)
47 2con_A RUH-035 protein, NIN on 88.1 0.16 5.4E-06 30.5 1.0 9 2-10 31-39 (79)
48 2fnf_X Putative RAS effector N 86.3 0.55 1.9E-05 27.3 2.7 25 2-34 36-60 (72)
49 2kv1_A Methionine-R-sulfoxide 86.0 0.91 3.1E-05 29.4 3.8 76 1-81 1-82 (124)
50 3iz5_m 60S ribosomal protein L 84.7 0.56 1.9E-05 28.9 2.2 29 2-34 37-65 (92)
51 1twf_L ABC10-alpha, DNA-direct 84.6 0.61 2.1E-05 27.2 2.3 24 4-32 31-54 (70)
52 1twf_I B12.6, DNA-directed RNA 84.4 1.2 4.1E-05 28.4 3.8 34 3-36 74-113 (122)
53 2kao_A Methionine-R-sulfoxide 84.2 1.3 4.4E-05 28.7 3.8 76 1-81 1-82 (124)
54 3qt1_I DNA-directed RNA polyme 83.9 0.39 1.3E-05 31.4 1.3 33 68-108 24-56 (133)
55 3h0g_I DNA-directed RNA polyme 83.6 0.46 1.6E-05 30.0 1.5 32 69-108 5-36 (113)
56 2zjr_Z 50S ribosomal protein L 83.5 0.23 8E-06 28.1 0.1 21 3-32 32-52 (60)
57 3j21_i 50S ribosomal protein L 82.8 0.7 2.4E-05 27.9 2.0 29 2-34 36-64 (83)
58 3cc2_Z 50S ribosomal protein L 82.7 0.45 1.5E-05 30.5 1.2 28 3-34 62-89 (116)
59 2kpi_A Uncharacterized protein 82.7 1.1 3.8E-05 24.8 2.7 30 2-37 11-42 (56)
60 1rfh_A RAS association (ralgds 82.4 0.67 2.3E-05 25.8 1.8 25 2-34 23-47 (59)
61 3jyw_9 60S ribosomal protein L 82.3 0.67 2.3E-05 27.2 1.8 29 2-34 27-55 (72)
62 3izc_m 60S ribosomal protein R 81.4 0.94 3.2E-05 27.8 2.3 29 2-34 37-65 (92)
63 1ffk_W Ribosomal protein L37AE 80.8 0.82 2.8E-05 26.9 1.8 29 2-34 28-56 (73)
64 1faq_A RAF-1; transferase, ser 80.2 0.83 2.8E-05 24.3 1.6 24 2-34 15-38 (52)
65 1qxf_A GR2, 30S ribosomal prot 79.2 0.41 1.4E-05 27.7 0.1 30 67-107 6-35 (66)
66 3k1f_M Transcription initiatio 79.2 1 3.4E-05 31.2 2.0 29 2-34 22-53 (197)
67 2e9h_A EIF-5, eukaryotic trans 79.1 1.6 5.4E-05 29.4 3.0 33 3-37 105-140 (157)
68 2d74_B Translation initiation 78.7 0.95 3.3E-05 30.1 1.8 34 3-37 106-139 (148)
69 3h0g_L DNA-directed RNA polyme 78.6 0.86 2.9E-05 26.1 1.4 27 3-34 23-49 (63)
70 2jrp_A Putative cytoplasmic pr 78.4 2.7 9.1E-05 25.2 3.6 26 2-33 3-28 (81)
71 3v2d_5 50S ribosomal protein L 77.9 0.38 1.3E-05 27.3 -0.3 22 2-32 31-52 (60)
72 3j20_W 30S ribosomal protein S 77.6 0.47 1.6E-05 27.2 0.0 30 67-107 14-43 (63)
73 1nee_A EIF-2-beta, probable tr 76.0 1 3.5E-05 29.6 1.3 33 3-36 104-136 (138)
74 4ayb_P DNA-directed RNA polyme 75.7 1.3 4.5E-05 23.8 1.5 30 3-34 5-34 (48)
75 1ptq_A Protein kinase C delta 75.1 3.1 0.00011 21.7 3.0 28 2-34 12-39 (50)
76 4a17_Y RPL37A, 60S ribosomal p 74.8 0.88 3E-05 28.5 0.8 28 3-34 38-65 (103)
77 3u5c_b RP61, YS20, 40S ribosom 74.8 0.93 3.2E-05 27.3 0.8 20 67-86 33-52 (82)
78 3cw2_K Translation initiation 73.5 1 3.4E-05 29.7 0.8 33 3-36 105-137 (139)
79 4bbr_M Transcription initiatio 72.8 2.1 7.2E-05 31.9 2.5 29 2-34 22-53 (345)
80 2jmo_A Parkin; IBR, E3 ligase, 72.8 2.1 7.3E-05 25.1 2.1 29 1-33 25-60 (80)
81 1kbe_A Kinase suppressor of RA 72.2 2.9 0.0001 22.4 2.4 25 2-35 15-39 (49)
82 3ga8_A HTH-type transcriptiona 72.1 4.1 0.00014 23.6 3.2 38 69-108 3-46 (78)
83 2g2k_A EIF-5, eukaryotic trans 71.8 2 6.8E-05 29.2 2.0 33 3-37 98-133 (170)
84 3irb_A Uncharacterized protein 71.8 1 3.5E-05 29.5 0.6 22 3-32 49-70 (145)
85 2jne_A Hypothetical protein YF 71.5 3.2 0.00011 25.8 2.7 24 3-32 34-57 (101)
86 2fiy_A Protein FDHE homolog; F 71.4 4.2 0.00014 30.0 3.8 38 68-109 182-219 (309)
87 2yuu_A NPKC-delta, protein kin 69.7 4.4 0.00015 23.8 3.0 29 2-35 29-57 (83)
88 2k1p_A Zinc finger RAN-binding 69.3 1.4 4.9E-05 21.7 0.6 22 3-32 8-29 (33)
89 2enz_A NPKC-theta, protein kin 68.8 4.1 0.00014 22.7 2.7 29 2-35 24-52 (65)
90 1y8f_A UNC-13 homolog A, MUNC1 68.3 4.9 0.00017 22.5 2.9 28 2-34 25-52 (66)
91 3k7a_M Transcription initiatio 68.2 2.6 9E-05 31.2 2.2 29 2-34 22-53 (345)
92 2ayj_A 50S ribosomal protein L 67.9 0.78 2.7E-05 25.6 -0.6 22 3-32 21-42 (56)
93 3uej_A NPKC-delta, protein kin 67.7 4.6 0.00016 22.5 2.7 28 2-34 21-48 (65)
94 2xzm_6 RPS27E; ribosome, trans 67.0 1 3.4E-05 27.0 -0.3 30 67-107 31-60 (81)
95 3f2b_A DNA-directed DNA polyme 66.8 5.3 0.00018 34.2 3.9 16 22-37 501-516 (1041)
96 3o9x_A Uncharacterized HTH-typ 66.3 6.2 0.00021 24.6 3.4 39 68-108 2-46 (133)
97 2eli_A Protein kinase C alpha 66.1 6.2 0.00021 23.3 3.2 29 2-35 29-57 (85)
98 2yqq_A Zinc finger HIT domain- 65.5 4.2 0.00014 22.6 2.1 20 1-31 12-31 (56)
99 3u50_C Telomerase-associated p 65.2 4.9 0.00017 27.2 2.9 24 4-32 45-68 (172)
100 2g2k_A EIF-5, eukaryotic trans 65.0 6.7 0.00023 26.6 3.5 32 69-107 97-128 (170)
101 4esj_A Type-2 restriction enzy 64.8 3.3 0.00011 29.8 2.0 33 68-108 34-66 (257)
102 2gnr_A Conserved hypothetical 64.7 1.8 6E-05 28.5 0.6 22 3-32 49-70 (145)
103 2xzm_9 RPS31E; ribosome, trans 63.7 2.8 9.6E-05 28.9 1.4 30 2-35 114-143 (189)
104 2a20_A Regulating synaptic mem 62.9 0.59 2E-05 26.5 -1.7 25 2-30 34-58 (62)
105 3iz6_X 40S ribosomal protein S 62.8 1.4 4.8E-05 26.7 -0.2 20 67-86 35-54 (86)
106 3w0f_A Endonuclease 8-like 3; 62.5 6 0.00021 28.9 3.1 31 3-33 253-283 (287)
107 1p91_A Ribosomal RNA large sub 62.0 4.9 0.00017 27.6 2.5 26 1-32 1-27 (269)
108 2enn_A NPKC-theta, protein kin 61.3 5.3 0.00018 23.1 2.2 28 2-34 35-62 (77)
109 2lk0_A RNA-binding protein 5; 61.2 2.4 8.4E-05 20.6 0.6 12 23-34 5-16 (32)
110 4b6d_A RAC GTPase-activating p 60.7 4.1 0.00014 22.7 1.6 27 2-34 20-46 (61)
111 3fac_A Putative uncharacterize 60.4 3.1 0.00011 25.8 1.1 12 21-32 65-76 (118)
112 1wd2_A Ariadne-1 protein homol 60.3 2.2 7.4E-05 23.9 0.3 27 2-32 7-35 (60)
113 2e9h_A EIF-5, eukaryotic trans 59.6 10 0.00035 25.3 3.6 32 69-107 104-135 (157)
114 2jox_A Churchill protein; zinc 57.8 8.3 0.00028 24.0 2.7 9 68-76 57-65 (106)
115 2k5r_A Uncharacterized protein 57.2 9 0.00031 23.6 2.8 36 2-37 9-67 (97)
116 2row_A RHO-associated protein 56.9 5.9 0.0002 23.7 1.9 30 2-34 36-65 (84)
117 2qkd_A Zinc finger protein ZPR 56.7 13 0.00045 28.5 4.2 41 67-110 219-261 (404)
118 2db6_A SH3 and cysteine rich d 56.5 4.8 0.00017 23.1 1.4 28 2-34 29-56 (74)
119 1dxg_A Desulforedoxin; non-hem 54.7 5.3 0.00018 19.8 1.2 12 94-107 4-15 (36)
120 1nui_A DNA primase/helicase; z 53.4 11 0.00039 26.2 3.2 29 68-107 14-42 (255)
121 2nn6_I 3'-5' exoribonuclease C 52.0 8.9 0.0003 26.5 2.4 28 3-36 171-198 (209)
122 2vrw_B P95VAV, VAV1, proto-onc 51.7 9.1 0.00031 28.4 2.6 27 2-34 358-385 (406)
123 2aus_D NOP10, ribosome biogene 49.4 4.8 0.00016 22.7 0.6 23 1-33 5-27 (60)
124 2zkr_2 60S ribosomal protein L 47.9 6.8 0.00023 24.2 1.1 24 3-33 18-41 (97)
125 1zvf_A 3-hydroxyanthranilate 3 47.7 4.3 0.00015 27.7 0.2 13 19-31 120-132 (176)
126 2k2d_A Ring finger and CHY zin 45.5 4.9 0.00017 23.7 0.2 13 23-35 37-49 (79)
127 3mao_A Methionine-R-sulfoxide 45.2 15 0.00052 22.9 2.5 18 64-81 57-75 (105)
128 4hc9_A Trans-acting T-cell-spe 44.4 3 0.0001 26.4 -0.9 86 2-109 6-91 (115)
129 2apo_B Ribosome biogenesis pro 44.0 6.3 0.00021 22.2 0.5 23 1-33 6-28 (60)
130 1vd4_A Transcription initiatio 43.9 13 0.00046 19.6 1.9 11 23-33 39-49 (62)
131 3e0o_A Peptide methionine sulf 42.6 14 0.00047 24.4 2.1 18 64-81 86-104 (144)
132 2yrc_A Protein transport prote 42.5 14 0.00049 20.4 1.8 35 3-37 11-47 (59)
133 3na7_A HP0958; flagellar bioge 41.3 5.3 0.00018 28.3 -0.1 34 3-36 200-235 (256)
134 1yfu_A 3-hydroxyanthranilate-3 40.3 4.2 0.00014 27.7 -0.8 13 19-31 118-130 (174)
135 1x6m_A GFA, glutathione-depend 40.3 5.5 0.00019 27.2 -0.2 13 2-14 99-111 (196)
136 3hcj_A MSRB, peptide methionin 38.1 14 0.00048 24.6 1.6 18 64-81 95-113 (154)
137 1bbo_A Human enhancer-binding 37.3 15 0.00051 18.5 1.4 32 3-34 3-40 (57)
138 1gnf_A Transcription factor GA 36.4 7 0.00024 20.7 -0.1 33 68-109 4-36 (46)
139 2kvh_A Zinc finger and BTB dom 36.3 16 0.00056 15.0 1.2 11 97-109 4-14 (27)
140 2i5o_A DNA polymerase ETA; zin 36.0 11 0.00038 19.2 0.6 12 3-14 11-22 (39)
141 2f9y_B Acetyl-coenzyme A carbo 35.9 3.9 0.00013 30.0 -1.6 30 3-35 26-55 (304)
142 2adr_A ADR1; transcription reg 35.9 18 0.0006 18.4 1.5 33 3-35 4-42 (60)
143 2agh_C Zinc finger protein HRX 35.8 13 0.00046 17.6 0.9 9 6-14 2-10 (31)
144 1l1o_C Replication protein A 7 35.3 22 0.00074 23.8 2.2 27 3-34 45-73 (181)
145 1l8d_A DNA double-strand break 35.2 9.7 0.00033 23.2 0.4 11 4-14 50-60 (112)
146 3qqc_A DNA-directed RNA polyme 33.9 15 0.00051 28.3 1.3 27 2-32 6-32 (436)
147 1wfh_A Zinc finger (AN1-like) 33.1 33 0.0011 19.4 2.4 10 23-33 29-38 (64)
148 3cxk_A Methionine-R-sulfoxide 32.5 17 0.00059 24.4 1.3 18 64-81 118-136 (164)
149 1wfl_A Zinc finger protein 216 32.0 38 0.0013 19.7 2.6 21 4-33 28-48 (74)
150 2kvf_A Zinc finger and BTB dom 30.8 23 0.00079 14.5 1.3 11 97-109 4-14 (28)
151 3hcg_A Peptide methionine sulf 30.7 12 0.0004 24.8 0.2 18 64-81 88-106 (146)
152 2kvg_A Zinc finger and BTB dom 30.7 21 0.0007 14.8 1.1 11 97-109 4-14 (27)
153 3q87_A Putative uncharacterize 30.6 24 0.00082 22.6 1.7 16 22-37 98-113 (125)
154 1vfy_A Phosphatidylinositol-3- 30.3 45 0.0015 18.8 2.8 25 3-33 13-37 (73)
155 1n0z_A ZNF265; zinc finger, RN 30.2 20 0.0007 18.6 1.1 9 6-14 21-29 (45)
156 2vut_I AREA, nitrogen regulato 30.1 9.5 0.00033 19.8 -0.2 31 70-109 3-33 (43)
157 2riq_A Poly [ADP-ribose] polym 30.1 23 0.00078 23.7 1.6 20 3-28 80-99 (160)
158 3cxl_A N-chimerin; SH2, RHO-GA 29.5 38 0.0013 25.8 2.9 28 2-34 221-248 (463)
159 2lce_A B-cell lymphoma 6 prote 28.7 27 0.00092 18.7 1.5 11 23-33 45-55 (74)
160 2ab3_A ZNF29; zinc finger prot 28.5 23 0.00079 14.5 1.0 11 97-109 3-15 (29)
161 2k8d_A Peptide methionine sulf 28.5 15 0.00053 24.3 0.5 18 64-81 106-124 (151)
162 1rik_A E6APC1 peptide; E6-bind 27.9 28 0.00096 14.3 1.3 10 97-108 3-12 (29)
163 3twl_A Formamidopyrimidine-DNA 27.9 16 0.00055 26.8 0.6 28 4-33 250-279 (310)
164 2m0d_A Zinc finger and BTB dom 27.7 27 0.00092 14.3 1.2 10 97-108 4-13 (30)
165 2yw8_A RUN and FYVE domain-con 27.2 53 0.0018 18.9 2.8 25 3-33 21-45 (82)
166 2x5c_A Hypothetical protein OR 26.7 20 0.00067 22.2 0.7 14 67-80 51-64 (131)
167 1joc_A EEA1, early endosomal a 26.6 55 0.0019 20.5 2.9 25 3-33 71-95 (125)
168 2lvu_A Zinc finger and BTB dom 32.5 14 0.00047 15.1 0.0 10 97-108 3-12 (26)
169 1wg2_A Zinc finger (AN1-like) 26.3 51 0.0018 18.6 2.4 10 23-33 29-38 (64)
170 1we9_A PHD finger family prote 26.3 61 0.0021 17.4 2.8 23 2-30 7-29 (64)
171 1zfo_A LAsp-1; LIM domain, zin 25.5 28 0.00094 16.3 1.0 12 3-14 5-16 (31)
172 3p8b_A DNA-directed RNA polyme 25.3 40 0.0014 20.0 1.9 24 4-37 26-49 (81)
173 3dfx_A Trans-acting T-cell-spe 25.2 13 0.00046 20.9 -0.2 35 66-109 5-39 (63)
174 2lv2_A Insulinoma-associated p 24.9 26 0.00088 20.3 1.0 12 23-34 28-39 (85)
175 2l1u_A MSRB2, methionine-R-sul 24.7 36 0.0012 22.3 1.8 18 64-81 89-107 (143)
176 2m0f_A Zinc finger and BTB dom 24.6 34 0.0012 13.9 1.2 10 97-108 3-12 (29)
177 3bvo_A CO-chaperone protein HS 24.6 29 0.00098 23.8 1.3 29 3-36 12-40 (207)
178 1x3z_A Peptide: N-glycanase; h 24.4 49 0.0017 24.7 2.6 38 68-107 119-164 (335)
179 3ny3_A E3 ubiquitin-protein li 24.4 41 0.0014 19.4 1.8 20 6-31 6-25 (75)
180 2f9i_B Acetyl-coenzyme A carbo 24.3 7.3 0.00025 28.3 -1.8 26 4-32 33-58 (285)
181 1znf_A 31ST zinc finger from X 24.1 19 0.00066 14.6 0.3 10 97-108 2-11 (27)
182 2elm_A Zinc finger protein 406 23.7 34 0.0012 15.4 1.2 11 97-109 10-20 (37)
183 2hpu_A NOSL protein; alpha bet 23.4 9.6 0.00033 25.7 -1.3 39 68-108 18-58 (175)
184 3nis_A E3 ubiquitin-protein li 23.4 45 0.0015 19.6 1.9 20 6-31 10-29 (82)
185 4gat_A Nitrogen regulatory pro 22.6 19 0.00065 20.5 0.1 34 67-109 8-41 (66)
186 1wff_A Riken cDNA 2810002D23 p 22.2 66 0.0023 19.2 2.5 10 23-33 40-49 (85)
187 1dvp_A HRS, hepatocyte growth 22.0 64 0.0022 21.9 2.8 25 3-33 163-187 (220)
188 2elq_A Zinc finger protein 406 22.0 41 0.0014 14.8 1.3 11 97-109 10-20 (36)
189 1z2q_A LM5-1; membrane protein 22.0 78 0.0027 18.2 2.8 25 3-33 23-47 (84)
190 2elv_A Zinc finger protein 406 21.8 40 0.0014 14.8 1.2 11 97-109 10-20 (36)
191 1pcx_A Protein transport prote 21.5 50 0.0017 27.3 2.4 34 3-36 114-147 (810)
192 1wfk_A Zinc finger, FYVE domai 21.5 93 0.0032 18.2 3.1 25 3-33 11-35 (88)
193 2elx_A Zinc finger protein 406 21.4 41 0.0014 14.5 1.2 11 97-109 8-18 (35)
194 4gop_C Putative uncharacterize 21.4 45 0.0015 25.2 2.0 26 3-33 310-337 (444)
195 1x4u_A Zinc finger, FYVE domai 21.1 96 0.0033 17.8 3.1 25 3-33 16-40 (84)
196 1srk_A Zinc finger protein ZFP 21.1 42 0.0015 14.6 1.2 11 97-109 8-18 (35)
197 3lqh_A Histone-lysine N-methyl 20.8 81 0.0028 21.2 3.0 30 2-34 3-32 (183)
198 2elp_A Zinc finger protein 406 20.7 44 0.0015 14.8 1.2 11 97-109 10-20 (37)
199 2e72_A POGO transposable eleme 20.4 39 0.0013 18.1 1.0 10 67-76 11-20 (49)
200 1wge_A Hypothetical protein 26 20.1 36 0.0012 20.2 1.0 8 23-30 52-59 (83)
No 1
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-45 Score=240.89 Aligned_cols=106 Identities=25% Similarity=0.558 Sum_probs=92.9
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEeccc--CccccccccccccccC-CCCCcccCCCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL--SKKEIQPIFTQDAMME-GPQTEVTCPACKHG 77 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~ 77 (110)
|.|||+|||||+|+++.+++.++|+|++|||++++++ ..+++..+ +.++..+|++++.+|+ +|++++.||+|||+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~--~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~ 81 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT--SKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQH 81 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC--SEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCS
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC--CeEEEEEEecccccccceeccccccccCCCcccCCCCCCCc
Confidence 7899999999999987777889999999999999987 34444333 3456667787777788 99999999999999
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCccccC
Q 033869 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110 (110)
Q Consensus 78 ~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wre 110 (110)
+|+|||+|+||||||||+||+|++ |+|+|++
T Consensus 82 ~a~~~q~q~rsade~mt~fy~C~~--C~~~w~~ 112 (113)
T 3h0g_I 82 EAVFYQTHSRRGDTMMTLIYVCVH--CGFAFEE 112 (113)
T ss_dssp CEEEECCCCSSCCCCCCCEEEESS--SCCCCCC
T ss_pred eEEEEEEecccCCCCCeeEEEcCC--CCCEEec
Confidence 999999999999999999999999 9999996
No 2
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=100.00 E-value=1.6e-43 Score=234.53 Aligned_cols=106 Identities=25% Similarity=0.557 Sum_probs=91.5
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEeccc--CccccccccccccccC-CCCCcccCCCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPL--SKKEIQPIFTQDAMME-GPQTEVTCPACKHG 77 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~ 77 (110)
|.|||+|||||+|++++..+.+.|+|++|||++.++. .++++..+ ..++..+|++++.+|+ +|++++.||+|||+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~--~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~ 81 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS--PLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSR 81 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSC--SEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecCc--cEEEEEeecccccccccccccccccccccccCCCCCCCCCC
Confidence 7899999999999987667789999999999999887 55555444 2344556666656678 99999999999999
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCccccC
Q 033869 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110 (110)
Q Consensus 78 ~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wre 110 (110)
+|+|||+|+||||||||+||+|++ |||+|++
T Consensus 82 ~a~~~q~q~rsade~~t~fy~C~~--C~~~w~~ 112 (122)
T 1twf_I 82 ENVFFQSQQRRKDTSMVLFFVCLS--CSHIFTS 112 (122)
T ss_dssp CEEEEECSSCCTTCCCCEEEEETT--TCCEEEC
T ss_pred EEEEEEecCccCCCCceEEEEeCC--CCCEecc
Confidence 999999999999999999999999 9999985
No 3
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-44 Score=239.40 Aligned_cols=106 Identities=33% Similarity=0.682 Sum_probs=39.8
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEecccCccc--cccccccccccC-CCCCcccCCCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKE--IQPIFTQDAMME-GPQTEVTCPACKHG 77 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~CpkCg~~ 77 (110)
|+|||+|||||+|+++++.+.+.|+|++|||++++++ .++++..++.+. ...++.+...++ +|++++.||+||++
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~--~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkCg~~ 101 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS--PLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSR 101 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC--SEEEECCC---------------------------------
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC--ceEEEEEeeccccccceeEeeccccccCCcccCCCCCCCCc
Confidence 7899999999999988777889999999999999988 577766654432 222333333456 99999999999999
Q ss_pred ceEEEEeccCCCCCCceEEEEecCCCCCccccC
Q 033869 78 KAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110 (110)
Q Consensus 78 ~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wre 110 (110)
+|+|||+|+||||||||+||+|++ |+|+|++
T Consensus 102 ~a~f~q~Q~RsaDE~mT~fy~C~~--C~~~w~e 132 (133)
T 3qt1_I 102 ENVFFQLQIRSADEPMTTFYKCVN--CGHRWKE 132 (133)
T ss_dssp ---------------------------------
T ss_pred eEEEEEEeeecCCCCCcEEEEcCC--CCCEeCc
Confidence 999999999999999999999999 9999986
No 4
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.93 E-value=3.6e-26 Score=129.43 Aligned_cols=42 Identities=45% Similarity=0.970 Sum_probs=40.0
Q ss_pred CCcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 66 QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 66 ~~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
+.++.||+|||++|+|||+|+||||||||+||+|++ |+|+|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~--Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNE--CGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESS--SCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCC--CCCeEE
Confidence 456899999999999999999999999999999999 999997
No 5
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.92 E-value=6.8e-26 Score=131.67 Aligned_cols=48 Identities=44% Similarity=0.997 Sum_probs=45.4
Q ss_pred ccC-CCCCcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCccccC
Q 033869 61 MME-GPQTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWNE 110 (110)
Q Consensus 61 ~~~-~~~~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wre 110 (110)
+++ +|++.+.||+||+++|+|+|+|+||||||||+||+|++ |+|+|++
T Consensus 7 ~~~~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~--Cg~~w~~ 55 (57)
T 1qyp_A 7 DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTK--CGHTWRS 55 (57)
T ss_dssp CCSSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESS--SCCEEEC
T ss_pred hhhcCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCC--CCCEecc
Confidence 556 88889999999999999999999999999999999999 9999986
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.81 E-value=5.5e-21 Score=133.41 Aligned_cols=42 Identities=43% Similarity=0.904 Sum_probs=39.9
Q ss_pred CCcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 66 QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 66 ~~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
++...||+|||++|+|||+|+||||||||+||+|++ |||+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~--C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEA--CGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETT--TCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCC--CCCeec
Confidence 346899999999999999999999999999999999 999997
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.74 E-value=7.7e-19 Score=131.50 Aligned_cols=41 Identities=49% Similarity=0.996 Sum_probs=39.2
Q ss_pred CcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 67 TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
....||+|||++|+|||+|+||||||||+||+|++ |||+|+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~--Cg~~w~ 307 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEA--CGNRWK 307 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCC--CCCcee
Confidence 35799999999999999999999999999999999 999997
No 8
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=98.38 E-value=1.9e-07 Score=53.20 Aligned_cols=30 Identities=33% Similarity=0.843 Sum_probs=24.3
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
|.|||.||+++... .+..++.|..|||++.
T Consensus 18 ~~fCPkCG~~~~ma----~~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA----EHADRYSCGRCGYTEF 47 (55)
T ss_dssp SCCCTTTTTTCCCE----ECSSEEECTTTCCCEE
T ss_pred cccCcCCCCceeEe----ccCCEEECCCCCCEEE
Confidence 68999999987755 2245999999999864
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.67 E-value=1.9e-05 Score=43.92 Aligned_cols=28 Identities=32% Similarity=0.878 Sum_probs=21.6
Q ss_pred CCCCcCCCC--CcccccCCCCCCceEEcCCCCCeee
Q 033869 1 MEFCPTCGT--MLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 1 M~FCp~C~n--lL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.+|||.||+ +|.+. ..++.|..|||++.
T Consensus 19 ~k~CP~CG~~~fm~~~------~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADH------GDRWACGKCGYTEW 48 (50)
T ss_dssp SEECSSSCSSCEEEEC------SSEEECSSSCCEEE
T ss_pred cccCCCCCCceEEecC------CCeEECCCCCCEEE
Confidence 369999998 44443 35999999999864
No 10
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=97.06 E-value=0.0011 Score=49.42 Aligned_cols=75 Identities=17% Similarity=0.471 Sum_probs=47.5
Q ss_pred CCCcCCCCCcccccCC----CCCCceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcccCCCCCCC
Q 033869 2 EFCPTCGTMLQYELPH----MDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHG 77 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~----~~~~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpkCg~~ 77 (110)
.+||-||+.=....-. .++.-++.|..|+..+... ..+||.||+.
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-------------------------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-------------------------------RIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-------------------------------TTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-------------------------------CcCCcCCCCC
Confidence 4899999764332111 1223378899998776532 3479999984
Q ss_pred -ceEEEEeccCCC--CCCceEEEEecCCCCCcccc
Q 033869 78 -KAVYHELQTRSA--DEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 78 -~a~~~~~Q~Rsa--DE~~T~fY~C~~~~C~~~wr 109 (110)
+..||++-.-++ +++....++|.+ |++.++
T Consensus 232 ~~l~y~~~e~~~~~~~~~~~r~e~C~~--C~~YlK 264 (309)
T 2fiy_A 232 KHLAYLSLEHDGQPAEKAVLRAETCPS--CQGYLK 264 (309)
T ss_dssp SCCEEECCCC-CCCSTTCSEEEEEETT--TTEEEE
T ss_pred CCeeEEEecCccccCCCcceEEEEccc--ccchHh
Confidence 566665532111 457789999999 987654
No 11
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=96.32 E-value=0.017 Score=34.94 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=32.3
Q ss_pred CceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEEec
Q 033869 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHELQ 85 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~~Q 85 (110)
...|.|+.|||+++-... +....|..+ ..+. +| .++.||.||..+..|..+.
T Consensus 25 m~~y~C~vCGyvYD~~~G-----------dp~~gI~pG-T~fedlP-ddW~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALG-----------WPEDGIAAG-TRWDDIP-DDWSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCEEEETTTCCEEETTTC-----------BTTTTBCTT-CCTTTSC-TTCCCTTTCCCGGGEEEEC
T ss_pred cceEEeCCCCEEEcCCcC-----------CcccCcCCC-CChhHCC-CCCcCCCCCCCHHHcEEcc
Confidence 458999999998764331 011112211 1222 33 4789999999999887763
No 12
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=96.26 E-value=0.0046 Score=41.91 Aligned_cols=34 Identities=32% Similarity=0.835 Sum_probs=27.2
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
++|||.||..|....+.+.......|+.|++...
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~ 36 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHY 36 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEEC
T ss_pred cccCchhCCccccccccCCCCcceECCCCCCccC
Confidence 5899999999988754555567899999996554
No 13
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=96.05 E-value=0.0095 Score=33.07 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=28.6
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEE
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHE 83 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~ 83 (110)
.|.|+.|||+++-... .....|..+ ..+. +| .+..||.||..+..|..
T Consensus 2 ~~~C~~CGyvYd~~~G-----------dp~~gi~pG-t~f~~lP-~dw~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEG-----------DPDNGISPG-TKFEDLP-DDWVCPLCGAPKSEFER 50 (52)
T ss_dssp EEEESSSSCEEETTTC-----------BGGGTBCTT-CCGGGSC-TTCBCTTTCCBGGGEEE
T ss_pred cEEeCCCCeEECCCcC-----------CcccCcCCC-CCHhHCC-CCCcCCCCCCCHHHcEE
Confidence 6899999998764431 001112111 1122 32 46799999999887754
No 14
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=96.01 E-value=0.01 Score=33.29 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=29.9
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEEe
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHEL 84 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~~ 84 (110)
.|.|+.|||+++-... .....|..+ ..+. +| .+..||.||..+..|..+
T Consensus 3 ~y~C~~CGyvYd~~~G-----------dp~~gi~pG-t~f~~lP-~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALG-----------LPEEGIPAG-TRWEDIP-ADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp EEEETTTCCEEETTTC-----------BTTTTBCTT-CCGGGSC-TTCCCTTTCCCGGGEEEC
T ss_pred cEEeCCCCeEECCCcC-----------CcccCcCCC-CChhHCC-CCCcCCCCCCCHHHceec
Confidence 6999999998764331 001112111 1122 33 478999999999888654
No 15
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=95.86 E-value=0.0076 Score=33.47 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=27.6
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEE
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYH 82 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~ 82 (110)
.|.|+.|||+++-... .....|..+ ..+. +| .+..||.||..+..|.
T Consensus 3 ~y~C~~CGyvYd~~~G-----------dp~~gi~pG-t~f~~lP-~dw~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKG-----------DPDSGIKPG-TKFEDLP-DDWACPVCGASKDAFE 50 (52)
T ss_dssp CEECSSSCCCCCTTTC-----------CTTTTCCSS-CCTTSSC-TTCCCSSSCCCTTSCE
T ss_pred cEEeCCCCeEEcCCcC-----------CcccCcCCC-CchHHCC-CCCcCCCCCCcHHHcE
Confidence 6999999998764320 000112111 1122 32 4789999999887664
No 16
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=95.59 E-value=0.0078 Score=32.64 Aligned_cols=40 Identities=20% Similarity=0.587 Sum_probs=25.7
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEE
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYH 82 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~ 82 (110)
.|.|+.|||+.+...... ..+. +| .+..||.||+.+..|-
T Consensus 4 ~y~C~vCGyvyd~~~Gd~-------------------t~f~~lP-~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN-------------------VPFDQLP-DDWCCPVCGVSKDQFS 44 (46)
T ss_dssp CEEETTTCCEECGGGGTT-------------------CCGGGSC-TTCBCTTTCCBGGGEE
T ss_pred EEECCCCCeEEeCCcCCC-------------------cchhhCC-CCCcCcCCCCcHHHcE
Confidence 689999999876432000 1111 22 3579999999887664
No 17
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=95.58 E-value=0.013 Score=34.56 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=30.9
Q ss_pred ceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEEe
Q 033869 22 SRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHEL 84 (110)
Q Consensus 22 ~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~~ 84 (110)
..|.|+.|||+++-... +....|..+ ..+. +| .++.||.||..+..|..+
T Consensus 6 ~~y~C~vCGyiYd~~~G-----------dp~~gi~pG-T~f~~lP-ddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKG-----------DKFAGIPPG-TPFVDLS-DSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp SCEEETTTCCEECTTTC-----------CTTTTCCSS-CCGGGSC-TTCBCTTTCCBGGGEEEC
T ss_pred ceEEeCCCCEEEcCCCC-----------CcccCcCCC-CchhhCC-CCCcCCCCCCCHHHceEc
Confidence 47999999998764331 011112111 1122 33 478999999999888765
No 18
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=95.51 E-value=0.016 Score=32.39 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=29.1
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEEe
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHEL 84 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~~ 84 (110)
.|.|+.|||+++-... +....|..+ ..+. +| .++.||.||..+..|..+
T Consensus 3 ~y~C~vCGyvYd~~~G-----------dp~~gi~pG-t~fe~lP-~dw~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDG-----------DPDDGVNPG-TDFKDIP-DDWVCPLCGVGKDEFEEV 52 (54)
T ss_dssp CEEETTTCCEECTTTC-----------BGGGTBCTT-CCGGGSC-TTCBCTTTCCBGGGEEEC
T ss_pred ceECCCCCeEECCCcC-----------CcccCcCCC-CChhHCC-CCCcCcCCCCcHHHceEc
Confidence 6899999998874331 001112111 1222 33 468999999988777543
No 19
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=95.33 E-value=0.017 Score=35.37 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=30.9
Q ss_pred CceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccC-CCCCcccCCCCCCCceEEEEe
Q 033869 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMME-GPQTEVTCPACKHGKAVYHEL 84 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CpkCg~~~a~~~~~ 84 (110)
...|.|+.|||+++-... +....|..+ ..+. +| .++.||.||..+..|..+
T Consensus 33 m~~y~C~vCGyvYD~~~G-----------dp~~gI~pG-T~fedlP-ddW~CPvCga~K~~F~~i 84 (87)
T 1s24_A 33 YLKWICITCGHIYDEALG-----------DEAEGFTPG-TRFEDIP-DDWCCPDCGATKEDYVLY 84 (87)
T ss_dssp CCEEEETTTTEEEETTSC-----------CTTTTCCSC-CCGGGCC-TTCCCSSSCCCGGGEEEC
T ss_pred CceEECCCCCeEecCCcC-----------CcccCcCCC-CChhHCC-CCCCCCCCCCCHHHhhhc
Confidence 458999999998764320 001112111 1122 33 478999999999888664
No 20
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=94.65 E-value=0.038 Score=36.41 Aligned_cols=17 Identities=24% Similarity=0.716 Sum_probs=13.8
Q ss_pred CceEEcCCCCCeeeeCC
Q 033869 21 PSRFSCPACPYVCNMES 37 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~ 37 (110)
...+.|++|||....+.
T Consensus 68 p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp CCEEEETTTCCEEEGGG
T ss_pred CCcEECCCCCCEEeccc
Confidence 45899999999887644
No 21
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.32 E-value=0.0078 Score=33.36 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=18.7
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
-||.||..+.+. .+.|+.|||+
T Consensus 16 iCpkC~a~~~~g--------aw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGATNPWG--------AKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCEECTT--------CSSCSSSSSC
T ss_pred cCCCCCCcCCCC--------ceecCCCCCc
Confidence 599999985554 8999999997
No 22
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=93.76 E-value=0.086 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=25.8
Q ss_pred ccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
+.||.||+.+..+.- +.-.+|-.|.. ||+++.
T Consensus 1 VlC~~C~~peT~l~~-------~~~~~~l~C~a--CG~~~~ 32 (36)
T 1k81_A 1 VICRECGKPDTKIIK-------EGRVHLLKCMA--CGAIRP 32 (36)
T ss_dssp CCCSSSCSCEEEEEE-------ETTEEEEEEET--TTEEEE
T ss_pred CCCcCCCCCCcEEEE-------eCCcEEEEhhc--CCCccc
Confidence 469999999988755 24789999999 998763
No 23
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=93.61 E-value=0.088 Score=33.52 Aligned_cols=32 Identities=16% Similarity=0.514 Sum_probs=22.9
Q ss_pred CceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcc-cCCCCCCCceEE
Q 033869 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEV-TCPACKHGKAVY 81 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~CpkCg~~~a~~ 81 (110)
...+.|+.||+....+. ... .||.||+....+
T Consensus 71 p~~~~C~~CG~~~e~~~-----------------------------~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNA-----------------------------LDYGVCEKCHSKNVII 103 (119)
T ss_dssp CCEEECSSSSCEECSCC-----------------------------STTCCCSSSSSCCCEE
T ss_pred cceEEcCCCCCEEeCCC-----------------------------CCCCcCccccCCCcEE
Confidence 45899999998765422 134 699999987655
No 24
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=93.57 E-value=0.03 Score=38.63 Aligned_cols=32 Identities=38% Similarity=0.892 Sum_probs=23.3
Q ss_pred eEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcccCCCCCCCceEEEE
Q 033869 23 RFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHE 83 (110)
Q Consensus 23 ~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpkCg~~~a~~~~ 83 (110)
.|.|+.|||+...++ +|. .||.||+++..|-.
T Consensus 155 ~~~C~~CG~~~~g~~--------------------------~p~---~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 155 KWRCRNCGYVHEGTG--------------------------APE---LCPACAHPKAHFEL 186 (191)
T ss_dssp EEEETTTCCEEEEEE--------------------------CCS---BCTTTCCBGGGEEE
T ss_pred eEEECCCCCEeeCCC--------------------------CCC---CCCCCcCCHHHHHh
Confidence 799999999765210 121 79999999887743
No 25
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=93.53 E-value=0.038 Score=32.57 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=23.2
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
|| ||++++.+ .. .-.-.|+ ||....++.
T Consensus 7 C~-C~~~~~~~--~~--~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 7 CD-CGRALYSR--EG--AKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp ET-TSCCEEEE--TT--CSEEEET-TTEEEECCS
T ss_pred CC-CCCEEEEc--CC--CcEEECC-CCCeeeece
Confidence 99 99999999 32 3488999 999888776
No 26
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.47 E-value=0.059 Score=29.13 Aligned_cols=29 Identities=31% Similarity=0.838 Sum_probs=21.3
Q ss_pred CCCcCCCC-CcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGT-MLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~n-lL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||.|++ -|... .. ...++|..||...+
T Consensus 6 ~~CP~C~~~~l~~d--~~--~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYD--PE--RGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEE--TT--TTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEc--CC--CCeEECcccCCccc
Confidence 46999998 66554 32 34799999998654
No 27
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=92.86 E-value=0.075 Score=36.13 Aligned_cols=33 Identities=27% Similarity=0.732 Sum_probs=23.7
Q ss_pred CceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcccCCCCCCCceEEEE
Q 033869 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYHE 83 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpkCg~~~a~~~~ 83 (110)
...|.|+.|||+.. + + +| ..||-||+++..|-.
T Consensus 136 ~~~~~C~~CG~i~~--~---------------------~----~p---~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 136 KKVYICPICGYTAV--D---------------------E----AP---EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SCEEECTTTCCEEE--S---------------------C----CC---SBCTTTCCBGGGCEE
T ss_pred CCeeEeCCCCCeeC--C---------------------C----CC---CCCCCCCCCHHHcee
Confidence 35899999999754 1 0 11 279999998887643
No 28
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.75 E-value=0.07 Score=36.42 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=23.6
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
.|++||+.|.|. + ..+.|+.||..+..+
T Consensus 142 ~~~~~g~~m~~~--~----~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 142 LCSNCKTEMVRE--G----DILKCPECGRVEKRK 169 (179)
T ss_dssp BCTTTCCBCEEC--S----SSEECSSSCCEECCC
T ss_pred cccccCCceEEC--C----CEEECCCCCCEEEEe
Confidence 699999999987 2 489999999987643
No 29
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=92.63 E-value=0.072 Score=32.06 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=20.6
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.+||.|++++... .+ ...+.|+.|++..
T Consensus 26 ~wCP~C~~~~~~~--~~--~~~v~C~~C~~~F 53 (86)
T 2ct7_A 26 LWCAQCSFGFIYE--RE--QLEATCPQCHQTF 53 (86)
T ss_dssp ECCSSSCCCEECC--CS--CSCEECTTTCCEE
T ss_pred eECcCCCchheec--CC--CCceEeCCCCCcc
Confidence 3799999988665 22 3468999998754
No 30
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=92.54 E-value=0.072 Score=38.56 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
++|||.||.-+... .......|+.|+......
T Consensus 107 ~~fC~~CG~~~~~~----~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 107 HKYCGYCGHEMYPS----KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp TSBCTTTCCBEEEC----SSSSCEEESSSSCEECCC
T ss_pred CCccccCCCcCccC----CCceeeeCCCCCCEecCC
Confidence 57999999998776 235689999999977643
No 31
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=92.16 E-value=0.12 Score=30.22 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=26.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|+.-|... .+ ...+.|+.|+..+++.+
T Consensus 9 L~CP~ck~~L~~~--~~--~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLS--AD--KTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEEC--TT--SSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEe--CC--CCEEEcCCCCcEecCcC
Confidence 4699999999887 32 35899999999999877
No 32
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=92.04 E-value=0.11 Score=30.16 Aligned_cols=32 Identities=16% Similarity=0.437 Sum_probs=26.4
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|+.-|... .. ...+.|+.|+..+++.+
T Consensus 9 L~CP~ck~~L~~~--~~--~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFD--KS--KDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEE--TT--TTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEe--CC--CCEEEcCCCCcEecCCC
Confidence 3699999999887 32 35899999999999877
No 33
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.04 E-value=0.12 Score=30.09 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|+.-|... .. ...+.|+.|+..+++.+
T Consensus 9 L~CP~ck~~L~~~--~~--~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYH--QD--KQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEE--TT--TTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEe--CC--CCEEEcCCCCcEecCCC
Confidence 4699999999887 32 35899999999999877
No 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.91 E-value=0.063 Score=32.53 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=21.9
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.||.||..+..+ .. ...|.|+.|+++..-
T Consensus 29 ~Cp~CG~~~v~r--~a--tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 29 ACPNCGEDRVDR--QG--TGIWQCSYCDYKFTG 57 (83)
T ss_dssp ECSSSCCEEEEE--EE--TTEEEETTTCCEEEC
T ss_pred cCCCCCCcceec--cC--CCeEECCCCCCEecC
Confidence 699999866555 22 459999999997543
No 35
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=91.91 E-value=0.086 Score=34.59 Aligned_cols=29 Identities=28% Similarity=0.696 Sum_probs=23.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.=||+|++-.... . +..|+|+-|++++..
T Consensus 28 P~CP~C~seytYe--D---g~l~vCPeC~hEW~~ 56 (138)
T 2akl_A 28 PPCPQCNSEYTYE--D---GALLVCPECAHEWSP 56 (138)
T ss_dssp CCCTTTCCCCCEE--C---SSSEEETTTTEEECT
T ss_pred CCCCCCCCcceEe--c---CCeEECCccccccCC
Confidence 4699999988887 1 347999999999853
No 36
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.88 E-value=0.16 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=18.6
Q ss_pred CCcCCCCCcc------cccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQ------YELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~------~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-||.||+--. .+...+...+.|.|..||+...
T Consensus 17 ~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp CCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred ECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 4888886411 1111123356788888888754
No 37
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=91.80 E-value=0.072 Score=34.95 Aligned_cols=28 Identities=29% Similarity=0.886 Sum_probs=20.7
Q ss_pred ccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
-.||+|+.+-.|- | |. .|+|.. |+|-|.
T Consensus 28 P~CP~C~seytYe--------D-g~--l~vCPe--C~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYE--------D-GA--LLVCPE--CAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEE--------C-SS--SEEETT--TTEEEC
T ss_pred CCCCCCCCcceEe--------c-CC--eEECCc--cccccC
Confidence 3799999876543 1 11 299998 999996
No 38
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=91.80 E-value=0.12 Score=30.33 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=26.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|+.-|... .. ...+.|+.||..+++.+
T Consensus 9 L~CP~ck~~L~~~--~~--~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 9 LVCPVCKGRLEFQ--RA--QAELVCNADRLAFPVRD 40 (70)
T ss_dssp CBCTTTCCBEEEE--TT--TTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCEEe--CC--CCEEEcCCCCceecCCC
Confidence 4699999998887 33 35899999999999877
No 39
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=91.56 E-value=0.17 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=20.2
Q ss_pred CCcCCCCCc------ccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTML------QYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL------~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-||.||+-- ..+...+...+.|.|.+||+.+.
T Consensus 11 ~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 11 TCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 589998652 22211223467799999998754
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=91.35 E-value=0.096 Score=33.68 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=25.3
Q ss_pred CCCcCCCCCcccccCCC----CC---CceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHM----DR---PSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~----~~---~~~~~C~~C~y~~~~ 35 (110)
.||..||++|.|-.... .+ .+.+.|-.||++.-.
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRY 106 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 59999999999863221 22 478999999987543
No 41
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=90.82 E-value=0.14 Score=31.08 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=23.6
Q ss_pred CcCCCCC--cccccCCCCCCceEEcCCCCCeee
Q 033869 4 CPTCGTM--LQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 4 Cp~C~nl--L~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
||.||+. +..+.|+......+.|+.||-...
T Consensus 26 CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 26 CPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CTTTCCSSCEEEEEETTTTEEEEEESSSCCEEE
T ss_pred CCCCCCCCeEEEEEEccCCEEEEEcccCCCeEE
Confidence 8888876 666766777778888999986554
No 42
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=90.48 E-value=0.14 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=23.5
Q ss_pred CceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcccCCCCCCCceEEE
Q 033869 21 PSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVYH 82 (110)
Q Consensus 21 ~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpkCg~~~a~~~ 82 (110)
...|.|+.|||+... . . .+.||-||+.+..|-
T Consensus 169 ~~~~~C~~CG~i~~g-~--------------------------~---p~~CP~C~~~k~~F~ 200 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG-E--------------------------D---FEKCPICFRPKDTFT 200 (202)
T ss_dssp CCEEECSSSCCEEES-S--------------------------C---CSBCTTTCCBGGGCE
T ss_pred CcEEEECCCCCEEcC-c--------------------------C---CCCCCCCCCChHHhe
Confidence 458999999997541 0 0 158999999887664
No 43
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=90.46 E-value=0.18 Score=36.31 Aligned_cols=34 Identities=29% Similarity=0.789 Sum_probs=23.3
Q ss_pred CCCcCCCCC-c-ccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTM-L-QYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nl-L-~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.|||.||+. | ..+ .....--|.|.+|+-..+.++
T Consensus 35 ~yCPnCG~~~l~~f~--nN~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 35 SYCPNCGNNPLNHFE--NNRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp CCCTTTCCSSCEEC------CCCEEECTTTCCEEEEEE
T ss_pred CcCCCCCChhhhhcc--CCCcccccccCCcchhheecc
Confidence 489999994 4 444 333456799999998877655
No 44
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=90.24 E-value=0.22 Score=28.86 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|..-|... .. ...+.|+.|+..+++.+
T Consensus 11 L~CP~ck~~L~~~--~~--~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYL--ES--EQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEE--TT--TTEEEETTTTEEEEEET
T ss_pred hCCCCCCCcCeEe--CC--CCEEEcCCCCccccCCC
Confidence 3699999988887 32 34899999999999877
No 45
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=90.10 E-value=0.12 Score=33.39 Aligned_cols=34 Identities=15% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCCcCCCCCcccccCCC----CC---CceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHM----DR---PSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~----~~---~~~~~C~~C~y~~~~ 35 (110)
.||..|+++|.|-.... .+ .+.+.|-.||++.-.
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRY 101 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 59999999999863221 21 478999999987543
No 46
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=90.09 E-value=0.28 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=19.8
Q ss_pred CCCcCCCC-CcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGT-MLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~n-lL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||+|++ -|... . ....++|..||.+..
T Consensus 12 ~~Cp~C~~~~lv~D--~--~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVED--Y--RAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEEC--S--SSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEe--C--CCCeEEeCCCCCEEe
Confidence 36999987 33333 2 245799999998643
No 47
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=88.15 E-value=0.16 Score=30.47 Aligned_cols=9 Identities=44% Similarity=1.180 Sum_probs=7.8
Q ss_pred CCCcCCCCC
Q 033869 2 EFCPTCGTM 10 (110)
Q Consensus 2 ~FCp~C~nl 10 (110)
.|||.|||-
T Consensus 31 ~FCp~CGn~ 39 (79)
T 2con_A 31 VFCGHCGNK 39 (79)
T ss_dssp CSCSSSCCS
T ss_pred ccccccCcc
Confidence 599999985
No 48
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=86.35 E-value=0.55 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.959 Sum_probs=20.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..||++| .+ .-+.|..|+|...
T Consensus 36 t~C~~C~~~l-~~-------qG~kC~~C~~~cH 60 (72)
T 2fnf_X 36 GWCDLCGREV-LR-------QALRCANCKFTCH 60 (72)
T ss_dssp CBCTTTSSBC-SS-------CCEECTTSSCEEC
T ss_pred cchhhhhHHH-Hh-------CcCccCCCCCeec
Confidence 5899999999 32 3689999999754
No 49
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=86.04 E-value=0.91 Score=29.38 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=39.1
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEec---ccCccccc-cccccccccC-CCCCcccCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQ---PLSKKEIQ-PIFTQDAMME-GPQTEVTCPACK 75 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~-~~~~~~~CpkCg 75 (110)
|-||..=++-+|-... ...+|+|..|+..-...+. ++.+-. .+.. .+. .++....... ..++++.|.+||
T Consensus 1 ~sFC~~F~ge~y~~~~---e~G~Y~C~~Cg~pLF~S~~-KfdSg~GWPSF~~-~i~~~~v~~~~d~~~~~r~Ev~C~~Cg 75 (124)
T 2kv1_A 1 MSFCSFFGGEVFQNHF---EPGVYVCAKCSYELFSSHS-KYAHSSPWPAFTE-TIHPDSVTKCPEKNRPEALKVSCGKCG 75 (124)
T ss_dssp CCCCCCCCSCSGGGTT---CCEEEEETTTCCBCCCTTS-CCCCCSSSCCBSC-CCCCSSCEEEECSSSTTCEEEECTTTT
T ss_pred CccccCccCccccCCC---CCEEEEecCCCCcccccCC-cccCCCCCceeec-ccccceEEEEeccCCceEEEEEEecCC
Confidence 7888755555554421 2469999999975433321 222111 1111 111 1111111112 457899999999
Q ss_pred C-CceEE
Q 033869 76 H-GKAVY 81 (110)
Q Consensus 76 ~-~~a~~ 81 (110)
. -..+|
T Consensus 76 ~HLGHVF 82 (124)
T 2kv1_A 76 NGLGHEF 82 (124)
T ss_dssp CCCEEEC
T ss_pred CccCCcc
Confidence 5 46666
No 50
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=84.68 E-value=0.56 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=21.2
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.+||.||.. ..+ + ....+|.|+.|++..-
T Consensus 37 y~CpfCgk~-~vk--R-~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 37 YFCEFCGKF-AVK--R-KAVGIWGCKDCGKVKA 65 (92)
T ss_dssp BCCTTTCSS-CBE--E-EETTEEECSSSCCEEE
T ss_pred ccCcccCCC-eeE--e-cCcceEEcCCCCCEEe
Confidence 479999988 343 2 1246999999999754
No 51
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=84.64 E-value=0.61 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=17.2
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
|++||....+. .. ....|+.||+.
T Consensus 31 C~~CG~~~e~~--~~---d~irCp~CG~R 54 (70)
T 1twf_L 31 CAECSSKLSLS--RT---DAVRCKDCGHR 54 (70)
T ss_dssp CSSSCCEECCC--TT---STTCCSSSCCC
T ss_pred CCCCCCcceeC--CC---CCccCCCCCce
Confidence 89999885554 11 24589999994
No 52
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=84.37 E-value=1.2 Score=28.44 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCcCCCCC------cccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTM------LQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nl------L~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
-||.||+- +..+...+...+.|.|.+||+.+...
T Consensus 74 ~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 74 ECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 58888875 22221122346778898898876543
No 53
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=84.20 E-value=1.3 Score=28.68 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=38.0
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEec---ccCccccc-cccccccccC-CCCCcccCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQ---PLSKKEIQ-PIFTQDAMME-GPQTEVTCPACK 75 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~-~~~~~~~CpkCg 75 (110)
|.||+-=+.-.|..+ ....+|+|..||..-...+. ++.+-. .+.. .+. ..+....... ..++++.|.+||
T Consensus 1 ~~~c~~~~ge~y~~~---~~~GiY~C~~Cg~pLF~S~~-KFdSG~GWPSF~~-pi~~~~v~~~~D~~~~~RtEV~C~~Cg 75 (124)
T 2kao_A 1 MSFCSFFGGEVFQNH---FEPGVYVCAKCSYELFSSHS-KYAHSSPWPAFTE-TIHPDSVTKCPEKNRPEALKVSCGKCG 75 (124)
T ss_dssp CCCCCCCCSCTTTTC---CCCCEEEESSSCCCCCCTTT-SCCCCCSSCCBSC-CCCCSSCEEEECSSCTTCEEEECTTTT
T ss_pred CccccccccccccCC---CCCEEEEeCCCCCccccCcc-cccCCCCChhhCc-cCCccceEEEecCCCCCEEEEEeCCCC
Confidence 788875444434331 12469999999975333221 221111 1111 111 1111111112 567899999999
Q ss_pred CC-ceEE
Q 033869 76 HG-KAVY 81 (110)
Q Consensus 76 ~~-~a~~ 81 (110)
.. ..||
T Consensus 76 ~HLGHVF 82 (124)
T 2kao_A 76 NGLGHEF 82 (124)
T ss_dssp CCCEEEC
T ss_pred CcCCccC
Confidence 55 6666
No 54
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=83.92 E-value=0.39 Score=31.40 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=20.9
Q ss_pred cccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCccc
Q 033869 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~w 108 (110)
-..||+||+- +..+...+.-.+.|.|.+ |+|.+
T Consensus 24 ~~FCPeCgNm------L~pked~~~~~l~~~Crt--CgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNNM------LYPREDKENNRLLFECRT--CSYVE 56 (133)
T ss_dssp CCBCTTTCCB------CBCCBCTTTCCBCCBCSS--SCCBC
T ss_pred CeeCCCCCCE------eeECccCCCceeEEECCC--CCCcE
Confidence 4578888872 223333333467788888 88864
No 55
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.59 E-value=0.46 Score=30.02 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=17.7
Q ss_pred ccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCccc
Q 033869 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~w 108 (110)
..||+||+-- ..+..++.-.+.|.|.+ |+|.+
T Consensus 5 ~FCp~Cgn~L------~~~~~~~~~~~~~~C~~--C~y~~ 36 (113)
T 3h0g_I 5 QYCIECNNML------YPREDKVDRVLRLACRN--CDYSE 36 (113)
T ss_dssp CCCSSSCCCC------EECCCTTTCCCCEECSS--SCCEE
T ss_pred eeCcCCCCEe------eEcccCCCCeeEEECCC--CCCeE
Confidence 4688887742 12222222345677877 87764
No 56
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=83.54 E-value=0.23 Score=28.14 Aligned_cols=21 Identities=33% Similarity=0.814 Sum_probs=13.8
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
.||.||.+-.| ..+|..|||-
T Consensus 32 ~c~~cG~~~~p---------H~vc~~CG~Y 52 (60)
T 2zjr_Z 32 ECPQCHGKKLS---------HHICPNCGYY 52 (60)
T ss_dssp ECTTTCCEECT---------TBCCTTTCBS
T ss_pred ECCCCCCEeCC---------ceEcCCCCcC
Confidence 57788877333 4567888864
No 57
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.78 E-value=0.7 Score=27.90 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=21.0
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||.||.. ..+ + ....+|.|+.|++..-
T Consensus 36 y~CpfCGk~-~vk--R-~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 36 HTCPVCGRK-AVK--R-ISTGIWQCQKCGATFA 64 (83)
T ss_dssp BCCSSSCSS-CEE--E-EETTEEEETTTCCEEE
T ss_pred cCCCCCCCc-eeE--e-cCcCeEEcCCCCCEEe
Confidence 379999988 343 2 1246999999998754
No 58
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=82.73 E-value=0.45 Score=30.49 Aligned_cols=28 Identities=25% Similarity=0.740 Sum_probs=19.9
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
+||.||.. ..+ +. ...+|.|+.|++..-
T Consensus 62 tCPfCGk~-~vK--R~-avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 62 ACPNCGED-RVD--RQ-GTGIWQCSYCDYKFT 89 (116)
T ss_dssp ECSSSCCE-EEE--EE-ETTEEEETTTCCEEE
T ss_pred cCCCCCCc-eeE--ec-CceeEECCCCCCEEE
Confidence 79999984 332 11 145999999999854
No 59
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=82.67 E-value=1.1 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.565 Sum_probs=25.3
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcC--CCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCP--ACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~--~C~y~~~~~~ 37 (110)
.-||.|+.-|... . ..+.|+ .|+..+++.+
T Consensus 11 L~CP~c~~~L~~~--~----~~L~C~~~~c~~~YPI~d 42 (56)
T 2kpi_A 11 LACPACHAPLEER--D----AELICTGQDCGLAYPVRD 42 (56)
T ss_dssp CCCSSSCSCEEEE--T----TEEEECSSSCCCEEEEET
T ss_pred eeCCCCCCcceec--C----CEEEcCCcCCCcEEeeEC
Confidence 3699999998887 2 589999 9999998876
No 60
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=82.38 E-value=0.67 Score=25.77 Aligned_cols=25 Identities=24% Similarity=0.959 Sum_probs=19.7
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..||++| .+ .-+.|..|++...
T Consensus 23 t~C~~C~~~i-~k-------qg~kC~~C~~~cH 47 (59)
T 1rfh_A 23 GWCDLCGREV-LR-------QALRCANCKFTCH 47 (59)
T ss_dssp EECTTTCSEE-CS-------CCEECTTTSCEEC
T ss_pred eEchhcchhh-hh-------CccEeCCCCCeEe
Confidence 4899999999 32 3689999998653
No 61
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=82.29 E-value=0.67 Score=27.25 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=20.8
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||.||..= .+ + ....+|.|+.|++..-
T Consensus 27 y~C~fCgk~~-vk--R-~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 27 YDCSFCGKKT-VK--R-GAAGIWTCSCCKKTVA 55 (72)
T ss_dssp BCCSSCCSSC-BS--B-CSSSCBCCSSSCCCCC
T ss_pred ccCCCCCCce-eE--e-cCCCeEECCCCCCEEe
Confidence 3799999773 43 2 2256999999998643
No 62
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=81.42 E-value=0.94 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=20.8
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.+||.||..= .+ + ....+|.|+.|++..-
T Consensus 37 y~CpfCgk~~-vk--R-~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 37 YDCSFCGKKT-VK--R-GAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCSSSCSSC-CE--E-EETTEEECTTTCCEEE
T ss_pred CcCCCCCCce-ee--e-cccceEEcCCCCCEEe
Confidence 4799999763 33 2 1246999999998754
No 63
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=80.85 E-value=0.82 Score=26.90 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=20.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||.||.. ..+ +. ...+|.|+.|++..-
T Consensus 28 y~C~fCgk~-~vk--R~-a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 28 YKCPVCGFP-KLK--RA-STSIWVCGHCGYKIA 56 (73)
T ss_pred ccCCCCCCc-eeE--EE-EeEEEECCCCCcEEE
Confidence 379999964 332 11 246899999999754
No 64
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=80.20 E-value=0.83 Score=24.35 Aligned_cols=24 Identities=33% Similarity=0.927 Sum_probs=19.7
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|. . -+.|..|++...
T Consensus 15 t~C~~C~~~l~-q--------G~~C~~C~~~~H 38 (52)
T 1faq_A 15 AFCDICQKFLL-N--------GFRCQTCGYKFH 38 (52)
T ss_dssp EECTTSSSEEC-S--------EEECTTTTCCBC
T ss_pred cCCCCcccccc-c--------CCEeCCCCCeEC
Confidence 48999999986 2 689999998654
No 65
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=79.18 E-value=0.41 Score=27.65 Aligned_cols=30 Identities=30% Similarity=0.806 Sum_probs=22.0
Q ss_pred CcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 67 TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
.+++||.|++...+|-.+|+ + -.|.. |+..
T Consensus 6 m~VKCp~C~niq~VFShA~t--------v-V~C~~--Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST--------I-VKCII--CGRT 35 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS--------C-EECSS--SCCE
T ss_pred EEEECCCCCCceEEEecCce--------E-EEccc--CCCE
Confidence 37899999999999965553 2 46777 7653
No 66
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=79.16 E-value=1 Score=31.15 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=20.0
Q ss_pred CCCcCCCC---CcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGT---MLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~n---lL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.+||+||. -|... . ....++|..||.+..
T Consensus 22 ~~CPECGs~~t~IV~D--~--erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 22 LTCPECKVYPPKIVER--F--SEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCTTTCCSSCCEEEE--G--GGTEEEETTTCBBCC
T ss_pred eECcCCCCcCCeEEEe--C--CCCEEEEcCCCCCcC
Confidence 37999997 23332 1 245899999998753
No 67
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.13 E-value=1.6 Score=29.36 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=25.2
Q ss_pred CCcCCCCC---cccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 3 FCPTCGTM---LQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 3 FCp~C~nl---L~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
-|+.|+|. |... +.++...+.|..||...+++.
T Consensus 105 lC~~C~sPdT~L~~~--~~~r~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 105 LCPECENPETDLHVN--PKKQTIGNSCKACGYRGMLDT 140 (157)
T ss_dssp SCTTTCCSCCEEEEE--TTTTEEEEECSSSCCEEECCC
T ss_pred ECCCCCCCccEEEEe--cCCCEEEEEccCCCCCCcccc
Confidence 59999987 3331 345678899999999988875
No 68
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=78.72 E-value=0.95 Score=30.12 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
-|+.|+|.=..- .++++...+.|..||...+++.
T Consensus 106 lC~~C~sPdT~L-~k~~r~~~l~C~ACGa~~~V~~ 139 (148)
T 2d74_B 106 ICPVCGSPDTKI-IKRDRFHFLKCEACGAETPIQH 139 (148)
T ss_dssp SCSSSCCTTCCC-CBSSSSBCCCCSSSCCCCCCCC
T ss_pred ECCCCCCcCcEE-EEeCCEEEEEecCCCCCccccc
Confidence 599999852211 1234678899999999888765
No 69
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.65 E-value=0.86 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=18.1
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-|.+||....++ . ...+.|+.|||...
T Consensus 23 ~C~~Cg~~~~l~--~---~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 23 LCADCGARNTIQ--A---KEVIRCRECGHRVM 49 (63)
T ss_dssp BCSSSCCBCCCC--S---SSCCCCSSSCCCCC
T ss_pred ECCCCCCeeecC--C---CCceECCCCCcEEE
Confidence 377888777665 2 24678888887543
No 70
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=78.43 E-value=2.7 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=20.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
..||.|++.|... ...+.|..|+...
T Consensus 3 ~~CP~C~~~l~~~------~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 3 ITCPVCHHALERN------GDTAHCETCAKDF 28 (81)
T ss_dssp CCCSSSCSCCEEC------SSEEECTTTCCEE
T ss_pred CCCCCCCCccccC------CCceECccccccC
Confidence 3799999999876 2278899999743
No 71
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=77.90 E-value=0.38 Score=27.27 Aligned_cols=22 Identities=36% Similarity=0.849 Sum_probs=14.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
..||+||.+-.+- .+|..|||-
T Consensus 31 ~~c~~cGe~~~~H---------~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMKPPH---------TVCPECGYY 52 (60)
T ss_dssp EECTTTCCEECTT---------SCCTTTCEE
T ss_pred eECCCCCCeecce---------EEcCCCCcC
Confidence 3578888754443 358888864
No 72
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.62 E-value=0.47 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=22.3
Q ss_pred CcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 67 TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
.+++||.|++...+|-..|+ + -.|.. |+..
T Consensus 14 m~VkCp~C~~~q~VFSha~t--------~-V~C~~--Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPAT--------K-VRCLI--CGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSS--------C-EECSS--SCCE
T ss_pred EEEECCCCCCeeEEEecCCe--------E-EEccC--cCCE
Confidence 48899999999999955543 2 46776 7653
No 73
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=75.97 E-value=1 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
-|+.|+|.=..-+ ++++...+.|..||...+++
T Consensus 104 lC~~C~sPdT~l~-k~~r~~~l~C~ACGa~~~V~ 136 (138)
T 1nee_A 104 ICHECNRPDTRII-REGRISLLKCEACGAKAPLK 136 (138)
T ss_dssp HHTCCSSCSSCCE-EETTTTEEECSTTSCCCCSC
T ss_pred ECCCCCCcCcEEE-EcCCeEEEEccCCCCCcccC
Confidence 3899998621110 22467899999999987764
No 74
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=75.71 E-value=1.3 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-|-.||.-+... .-..-....|+.|||...
T Consensus 5 ~C~rCg~~fs~~--el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCGKCWKTFTDE--QLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCCTTTTCCCC--CSCCCSSSCCTTTCCSCE
T ss_pred EeeccCCCccHH--HHhhCCCcccCccCcEEE
Confidence 377888887777 333345789999999643
No 75
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=75.10 E-value=3.1 Score=21.74 Aligned_cols=28 Identities=25% Similarity=0.624 Sum_probs=21.0
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|.-- ...-+.|..|++...
T Consensus 12 t~C~~C~~~l~g~-----~~qg~~C~~C~~~~H 39 (50)
T 1ptq_A 12 TFCDHCGSLLWGL-----VKQGLKCEDCGMNVH 39 (50)
T ss_dssp CBCTTTCCBCCSS-----SSCEEEETTTCCEEC
T ss_pred CCcCCCCceeecc-----CCccCEeCCCCCeEC
Confidence 5899999999632 134789999998643
No 76
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=74.82 E-value=0.88 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.611 Sum_probs=20.4
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
+||.||..= .+ +. ...+|.|+.|++..-
T Consensus 38 ~CpfCgk~~-vK--R~-a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 38 GCPFCGKVA-VK--RA-AVGIWKCKPCKKIIA 65 (103)
T ss_dssp ECTTTCCEE-EE--EE-ETTEEEETTTTEEEE
T ss_pred CCCCCCCce-ee--ec-CcceEEcCCCCCEEe
Confidence 699999873 33 21 246999999998754
No 77
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=74.76 E-value=0.93 Score=27.26 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=17.2
Q ss_pred CcccCCCCCCCceEEEEecc
Q 033869 67 TEVTCPACKHGKAVYHELQT 86 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~ 86 (110)
.+++||.|++...+|-..|+
T Consensus 33 m~VkCp~C~~~q~VFSha~t 52 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQT 52 (82)
T ss_dssp EEEECTTSCSCEEEESBCSS
T ss_pred EEEECCCCCCeeEEEecCCe
Confidence 48999999999999977664
No 78
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=73.47 E-value=1 Score=29.67 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=16.5
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
-|+.|+|.=..- .++++...+.|..||...+++
T Consensus 105 lC~~C~sPdT~l-~k~~r~~~l~C~ACGa~~~V~ 137 (139)
T 3cw2_K 105 ECSTCKSLDTIL-KKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp SCCSSSSSCCCS-CSSCSTTTSSCCC--------
T ss_pred ECCCCCCcCcEE-EEeCCeEEEEecCCCCCCccC
Confidence 599999862211 123467789999999887654
No 79
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=72.79 E-value=2.1 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=20.2
Q ss_pred CCCcCCCC---CcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGT---MLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~n---lL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||+||+ -|... . ....++|..||.+-.
T Consensus 22 ~~Cp~C~~~~~~lv~D--~--~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 22 LTCPECKVYPPKIVER--F--SEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSSCCCSSCCEEEE--G--GGTEEEETTTCBEEE
T ss_pred CcCCCCCCCCCceeEE--C--CCCcEEeCCCCCCcc
Confidence 37999995 34333 2 245899999998754
No 80
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=72.75 E-value=2.1 Score=25.11 Aligned_cols=29 Identities=28% Similarity=0.681 Sum_probs=19.6
Q ss_pred CCCCcC--CCCCcccccCCCCCCceEEcC-----CCCCee
Q 033869 1 MEFCPT--CGTMLQYELPHMDRPSRFSCP-----ACPYVC 33 (110)
Q Consensus 1 M~FCp~--C~nlL~~~~~~~~~~~~~~C~-----~C~y~~ 33 (110)
+.+||. |++.+... .+ .....|+ .|++..
T Consensus 25 ~~~CP~p~C~~~v~~~--~~--~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPE--PD--QRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCCCCCCC--SC--TTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCcccEEC--CC--CCcCCCCCCCCCCCCCee
Confidence 367887 99988776 22 2357787 788753
No 81
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=72.22 E-value=2.9 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.631 Sum_probs=20.0
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.||..|+.+|. . -+.|..|+|....
T Consensus 15 t~C~~C~k~i~-~--------G~kC~~Ck~~cH~ 39 (49)
T 1kbe_A 15 QVCNVCQKSMI-F--------GVKCKHCRLKCHN 39 (49)
T ss_dssp CCCSSSCCSSC-C--------EEEETTTTEEESS
T ss_pred cCccccCceeE-C--------cCCCCCCCCccch
Confidence 58999999996 2 2899999997543
No 82
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=72.08 E-value=4.1 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=21.2
Q ss_pred ccCCCCCCCceEEEEe--ccCCCCCCce----EEEEecCCCCCccc
Q 033869 69 VTCPACKHGKAVYHEL--QTRSADEPMS----IFYMCANKNCKHRW 108 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~--Q~RsaDE~~T----~fY~C~~~~C~~~w 108 (110)
.+||-||..++..-.. ...-..+-.+ -.+.|.. ||-.|
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~--CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVH--CEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETT--TCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCC--CCCEE
Confidence 4799999876543221 1111111121 2588998 98765
No 83
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=71.81 E-value=2 Score=29.22 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=25.0
Q ss_pred CCcCCCCC---cccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 3 FCPTCGTM---LQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 3 FCp~C~nl---L~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
-|+.|+|. |... ..++...+.|..||...+++.
T Consensus 98 lC~~C~sPdT~L~k~--~~~r~~~l~C~ACGa~~~V~~ 133 (170)
T 2g2k_A 98 LCPECENPETDLHVN--PKKQTIGNSCKACGYRGMLDT 133 (170)
T ss_dssp SCTTTSSSCEEEEEE--TTTTEEEEEETTTCCCCCSCS
T ss_pred ECCCCCCCccEEEEe--cCCCEEEEEccccCCcccccc
Confidence 49999987 3331 245678899999999988875
No 84
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=71.80 E-value=1 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.630 Sum_probs=18.9
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
-|+.||.+..|+ +..|+.|+-.
T Consensus 49 rC~~CG~~~~PP--------r~~Cp~C~s~ 70 (145)
T 3irb_A 49 KCSKCGRIFVPA--------RSYCEHCFVK 70 (145)
T ss_dssp ECTTTCCEEESC--------CSEETTTTEE
T ss_pred EeCCCCcEEcCc--------hhhCcCCCCC
Confidence 599999999998 5579999964
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.51 E-value=3.2 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=18.6
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
.||.|++-|... +..+.|..|+..
T Consensus 34 ~CP~Cq~eL~~~------g~~~hC~~C~~~ 57 (101)
T 2jne_A 34 HCPQCQHVLDQD------NGHARCRSCGEF 57 (101)
T ss_dssp BCSSSCSBEEEE------TTEEEETTTCCE
T ss_pred cCccCCCcceec------CCEEECccccch
Confidence 799999998876 237789999863
No 86
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=71.44 E-value=4.2 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.539 Sum_probs=24.3
Q ss_pred cccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
...||-||..-..-. +..+...+| .+|..|.- |++.|+
T Consensus 182 ~~~CPvCGs~P~~s~-l~~~g~~~G-~R~l~Cs~--C~t~W~ 219 (309)
T 2fiy_A 182 RTLCPACGSPPMAGM-IRQGGKETG-LRYLSCSL--CACEWH 219 (309)
T ss_dssp CSSCTTTCCCEEEEE-EEC----CC-EEEEEETT--TCCEEE
T ss_pred CCCCCCCCCcCceeE-EeecCCCCC-cEEEEeCC--CCCEEe
Confidence 569999998644332 222223344 46899988 999996
No 87
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.71 E-value=4.4 Score=23.77 Aligned_cols=29 Identities=17% Similarity=0.516 Sum_probs=21.6
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.||..|+.+|.-- ...-|.|..|++....
T Consensus 29 t~C~~C~~~lwGl-----~kqg~~C~~C~~~~Hk 57 (83)
T 2yuu_A 29 TFCSVCKDFVWGL-----NKQGYKCRQCNAAIHK 57 (83)
T ss_dssp CCCSSSCCCCCSS-----SCCEEEETTTCCEECT
T ss_pred cChhhcChhhccc-----cccccccCCcCCeeCh
Confidence 5899999999632 1247899999987543
No 88
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=69.30 E-value=1.4 Score=21.67 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=13.5
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
-||.|+++=... +..|..|+..
T Consensus 8 ~C~~C~~~Nfa~--------R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWAR--------RSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCTT--------CSBCSSSCCB
T ss_pred ccCCCCCccccc--------cccccccCCc
Confidence 367777776666 3456666643
No 89
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=68.82 E-value=4.1 Score=22.69 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=21.4
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.||..|+.+|.-- ...-+.|..|++....
T Consensus 24 t~C~~C~~~l~Gl-----~~qg~~C~~C~~~~Hk 52 (65)
T 2enz_A 24 TFCEHCGTLLWGL-----ARQGLKCDACGMNVHH 52 (65)
T ss_dssp CBCSSSCCBCCCS-----SSCSEEESSSCCEECT
T ss_pred cCchhcChhheec-----CCcccccCCCCCccCH
Confidence 5899999999632 1246899999986543
No 90
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=68.33 E-value=4.9 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.605 Sum_probs=21.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|.-- ...-+.|..|++...
T Consensus 25 t~C~~C~~~l~Gl-----~~qg~~C~~C~~~~H 52 (66)
T 1y8f_A 25 TYCYECEGLLWGI-----ARQGMRCTECGVKCH 52 (66)
T ss_dssp CCCTTTCCCCCSS-----CCEEEEETTTCCEEC
T ss_pred cChhhcChhhccc-----CcceeEcCCCCCeeC
Confidence 5899999999542 134789999998643
No 91
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=68.23 E-value=2.6 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=20.3
Q ss_pred CCCcCCCCC---cccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTM---LQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nl---L~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
..||+||.- |... . ....++|..||.+-.
T Consensus 22 ~~Cp~Cg~~~~~iv~D--~--~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVER--F--SEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCC--S--SSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEE--C--CCCCEecCCCCeEcc
Confidence 479999984 3332 2 245889999999754
No 92
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=67.90 E-value=0.78 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=15.6
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
.|-.|+--|.+. .-.||.|||.
T Consensus 21 ICrkC~ARnp~~--------A~~CRKCg~~ 42 (56)
T 2ayj_A 21 VCRKCGALNPIR--------ATKCRRCHST 42 (56)
T ss_dssp EETTTCCEECTT--------CSSCTTTCCC
T ss_pred hhccccCcCCcc--------cccccCCCCC
Confidence 577787777777 3357788865
No 93
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=67.73 E-value=4.6 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.624 Sum_probs=21.0
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+.+|.-- ...-+.|..|++...
T Consensus 21 t~C~~C~~~l~Gl-----~~qg~~C~~C~~~~H 48 (65)
T 3uej_A 21 TFCDHCGSLLWGL-----VKQGLKCEDCGMNVH 48 (65)
T ss_dssp CBCTTTCCBCCSS-----SSCEEEETTTCCEEC
T ss_pred CcccccChhhhcc-----CceeeECCCCCCeEc
Confidence 4899999998532 124799999998654
No 94
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=67.00 E-value=1 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.683 Sum_probs=22.5
Q ss_pred CcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 67 TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
.+++||.|++...+|-.+|+ + -.|.. |+..
T Consensus 31 m~VkCp~C~n~q~VFShA~t--------~-V~C~~--Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQS--------T-IICEK--CSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSS--------C-EECSS--SCCE
T ss_pred EEeECCCCCCeeEEEecCcc--------E-EEccC--CCCE
Confidence 48899999999999955443 2 56777 8754
No 95
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=66.81 E-value=5.3 Score=34.21 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=12.7
Q ss_pred ceEEcCCCCCeeeeCC
Q 033869 22 SRFSCPACPYVCNMES 37 (110)
Q Consensus 22 ~~~~C~~C~y~~~~~~ 37 (110)
..|.|++|.|.+..++
T Consensus 501 phy~c~~c~~~ef~~~ 516 (1041)
T 3f2b_A 501 PHYVCPNCKHSEFFND 516 (1041)
T ss_dssp SEEECTTTCCEEECCS
T ss_pred ccccCccccccccccc
Confidence 4799999999876543
No 96
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=66.29 E-value=6.2 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=22.1
Q ss_pred cccCCCCCCCceEEEEec--cCCCCCCce----EEEEecCCCCCccc
Q 033869 68 EVTCPACKHGKAVYHELQ--TRSADEPMS----IFYMCANKNCKHRW 108 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q--~RsaDE~~T----~fY~C~~~~C~~~w 108 (110)
+.+||.||...+..-... ..-.++-.+ -.|.|.. ||..+
T Consensus 2 ~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~--CGE~~ 46 (133)
T 3o9x_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVH--CEESI 46 (133)
T ss_dssp CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESS--SSCEE
T ss_pred CcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCC--CCCEe
Confidence 358999998765432211 111122222 3688999 99765
No 97
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.12 E-value=6.2 Score=23.27 Aligned_cols=29 Identities=24% Similarity=0.602 Sum_probs=21.9
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
.||..|+++|.-- ...-+.|..|++....
T Consensus 29 t~C~~C~~~l~Gl-----~kqG~~C~~C~~~~Hk 57 (85)
T 2eli_A 29 TFCDHCGSLLYGL-----IHQGMKCDTCDMNVHK 57 (85)
T ss_dssp CBCSSSCCBCCCS-----SSCEEECSSSCCEEET
T ss_pred cCCcccCcccccc-----ccCCCcCCCcCCccCH
Confidence 5899999999642 1347899999987553
No 98
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.48 E-value=4.2 Score=22.57 Aligned_cols=20 Identities=30% Similarity=0.828 Sum_probs=14.7
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCC
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPY 31 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y 31 (110)
|.||..|+. +. .|.|+.|+-
T Consensus 12 ~~~C~vC~~---~~--------kY~CPrC~~ 31 (56)
T 2yqq_A 12 TVVCVICLE---KP--------KYRCPACRV 31 (56)
T ss_dssp CCCCTTTCS---CC--------SEECTTTCC
T ss_pred CCccCcCcC---CC--------eeeCCCCCC
Confidence 457888877 33 589999985
No 99
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=65.23 E-value=4.9 Score=27.21 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=19.1
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
||.|+.-+... . ...|.|..|+..
T Consensus 45 Cp~CnKKV~~~--~---~g~~~CekC~~~ 68 (172)
T 3u50_C 45 CTCQGKSVLKY--H---GDSFFCESCQQF 68 (172)
T ss_dssp CTTSCCCEEEE--T---TTEEEETTTTEE
T ss_pred chhhCCEeeeC--C---CCeEECCCCCCC
Confidence 89999888733 1 348999999987
No 100
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=64.97 E-value=6.7 Score=26.59 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=25.8
Q ss_pred ccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
+.|+.|++.+..+.-.. +.-.+|-.|.. ||++
T Consensus 97 VlC~~C~sPdT~L~k~~-----~~r~~~l~C~A--CGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNP-----KKQTIGNSCKA--CGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEET-----TTTEEEEEETT--TCCC
T ss_pred EECCCCCCCccEEEEec-----CCCEEEEEccc--cCCc
Confidence 69999999998875421 46789999999 9875
No 101
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=64.79 E-value=3.3 Score=29.81 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=20.5
Q ss_pred cccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCccc
Q 033869 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRW 108 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~w 108 (110)
+.-||.||+....=|..=...|| |.|.+ |+..+
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaD------F~C~~--C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVAD------FYCNH--CSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCE------EECTT--TCCEE
T ss_pred CCcCCCCCChhhhhccCCCcccc------cccCC--cchhh
Confidence 45799999976655555555555 56888 87644
No 102
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=64.72 E-value=1.8 Score=28.50 Aligned_cols=22 Identities=27% Similarity=0.630 Sum_probs=18.7
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
-|+.||.+..|+ +..|+.|+-.
T Consensus 49 rC~~CG~~~fPP--------r~~Cp~C~s~ 70 (145)
T 2gnr_A 49 KCSKCGRIFVPA--------RSYCEHCFVK 70 (145)
T ss_dssp ECTTTCCEEESC--------CSEETTTTEE
T ss_pred EECCCCcEEeCC--------CCCCCCCCCC
Confidence 599999999998 4579999864
No 103
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=63.69 E-value=2.8 Score=28.88 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=20.5
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
+.||.||--..+. .+..++.|-.|+|++..
T Consensus 114 ~~Cp~Cg~g~fma----~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 114 KGCPKCGPGIFMA----KHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp EECSTTCSSCEEE----ECSSCEEETTTCCCBCC
T ss_pred ccCCccCCCcccc----CccCCCccCCceeEEEe
Confidence 4699999443333 22448899999998754
No 104
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=62.85 E-value=0.59 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.768 Sum_probs=15.3
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACP 30 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~ 30 (110)
+||..||--+.++ ....+|+|..|.
T Consensus 34 r~CaRCGg~v~lr----~~k~~WvC~lC~ 58 (62)
T 2a20_A 34 KFCARCGGRVSLR----SNKVMWVCNLCR 58 (62)
T ss_dssp EECTTSEEEEESS----TTCEEEEEHHHH
T ss_pred eeecccCCEeeec----CCeEEEEehhhh
Confidence 4677777766665 234577776553
No 105
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=62.75 E-value=1.4 Score=26.68 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=16.5
Q ss_pred CcccCCCCCCCceEEEEecc
Q 033869 67 TEVTCPACKHGKAVYHELQT 86 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~ 86 (110)
.+++||.|++...+|-.+|+
T Consensus 35 m~VkCp~C~~~~~VFShA~t 54 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQT 54 (86)
T ss_dssp EEEECTTTCCEEEEETTCSS
T ss_pred eEEECCCCCCeeEEEecCCc
Confidence 47999999999999965554
No 106
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=62.52 E-value=6 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=21.8
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
-||.||..+.-..-...++..|.|+.|....
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCccccc
Confidence 4999999877652222368899999998643
No 107
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=62.05 E-value=4.9 Score=27.64 Aligned_cols=26 Identities=35% Similarity=0.774 Sum_probs=19.3
Q ss_pred CCC-CcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 1 MEF-CPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 1 M~F-Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
|.| ||.|+.-|... ...+.|.+|...
T Consensus 1 m~~~Cp~C~~~~~~~------~~~~~C~~~~~~ 27 (269)
T 1p91_A 1 MSFSCPLCHQPLSRE------KNSYICPQRHQF 27 (269)
T ss_dssp -CBBCTTTCCBCEEE------TTEEECTTCCEE
T ss_pred CcccCCCCCccceeC------CCEEECCCCCcC
Confidence 555 99999988775 237999998754
No 108
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=61.25 E-value=5.3 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.547 Sum_probs=21.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|.-- ...-|.|..|++...
T Consensus 35 t~C~~C~~~lwGl-----~kqG~~C~~C~~~~H 62 (77)
T 2enn_A 35 TFCSVCHEFVWGL-----NKQGYQCRQCNAAIH 62 (77)
T ss_dssp EECSSSCCEECCT-----TCCEEECSSSCCEEE
T ss_pred cCccccChhhccc-----cccccCcCCCCCcCC
Confidence 4899999998732 124789999998654
No 109
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=61.17 E-value=2.4 Score=20.62 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.7
Q ss_pred eEEcCCCCCeee
Q 033869 23 RFSCPACPYVCN 34 (110)
Q Consensus 23 ~~~C~~C~y~~~ 34 (110)
-+.|+.|++...
T Consensus 5 DW~C~~C~~~Nf 16 (32)
T 2lk0_A 5 DWLCNKCCLNNF 16 (32)
T ss_dssp EEECTTTCCEEE
T ss_pred CCCcCcCcCCcC
Confidence 466666665443
No 110
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=60.73 E-value=4.1 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.733 Sum_probs=20.0
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||.-||..+..- ...|.|+.|+....
T Consensus 20 ~~C~~Cg~~i~~g------kq~~kC~dC~~~cH 46 (61)
T 4b6d_A 20 ESCVPCGKRIKFG------KLSLKCRDCRVVSH 46 (61)
T ss_dssp EECTTTCCEECTT------CEEEEESSSSCEEC
T ss_pred cccccccCEEEEe------eEeeECCCCCCeEc
Confidence 4789998887542 35799999997543
No 111
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=60.39 E-value=3.1 Score=25.84 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=8.7
Q ss_pred CceEEcCCCCCe
Q 033869 21 PSRFSCPACPYV 32 (110)
Q Consensus 21 ~~~~~C~~C~y~ 32 (110)
..++.|++||-.
T Consensus 65 ~~r~FC~~CGs~ 76 (118)
T 3fac_A 65 AKHWFCRTCGIY 76 (118)
T ss_dssp SEEEEETTTCCE
T ss_pred EeeEECCCCCcc
Confidence 457888888853
No 112
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.28 E-value=2.2 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=19.1
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCC--CCCe
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPA--CPYV 32 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~--C~y~ 32 (110)
+=||.|+.++.-. ++-+.+.|+. |++.
T Consensus 7 k~CP~C~~~Iek~----~GCnhmtC~~~~C~~~ 35 (60)
T 1wd2_A 7 KECPKCHVTIEKD----GGCNHMVCRNQNCKAE 35 (60)
T ss_dssp CCCTTTCCCCSSC----CSCCSSSCCSSGGGSC
T ss_pred eECcCCCCeeEeC----CCCCcEEECCCCcCCE
Confidence 3589998887665 3456788887 8764
No 113
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.63 E-value=10 Score=25.31 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=25.6
Q ss_pred ccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 69 VTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 69 ~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
+.|+.|++.+..+... .+.-++|-.|.. ||++
T Consensus 104 VlC~~C~sPdT~L~~~-----~~~r~~~l~C~A--CGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVN-----PKKQTIGNSCKA--CGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEE-----TTTTEEEEECSS--SCCE
T ss_pred EECCCCCCCccEEEEe-----cCCCEEEEEccC--CCCC
Confidence 7999999999877431 246789999999 9875
No 114
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=57.83 E-value=8.3 Score=24.00 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=6.0
Q ss_pred cccCCCCCC
Q 033869 68 EVTCPACKH 76 (110)
Q Consensus 68 ~~~CpkCg~ 76 (110)
+..|++|+|
T Consensus 57 ~H~C~nC~H 65 (106)
T 2jox_A 57 DHLCKNCHH 65 (106)
T ss_dssp EEEETTTCC
T ss_pred EEecCCCce
Confidence 566777766
No 115
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=57.21 E-value=9 Score=23.55 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=26.0
Q ss_pred CCCcCCCCCcccccCC----------------C-------CCCceEEcCCCCCeeeeCC
Q 033869 2 EFCPTCGTMLQYELPH----------------M-------DRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~----------------~-------~~~~~~~C~~C~y~~~~~~ 37 (110)
.-||.|..-|.+.+.+ . -....++|+.|+..+++.+
T Consensus 9 LaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~d 67 (97)
T 2k5r_A 9 LCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIED 67 (97)
T ss_dssp CCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEET
T ss_pred eECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccC
Confidence 4699999877765321 0 0145799999999999887
No 116
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=56.92 E-value=5.9 Score=23.69 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=21.4
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-||..|+++|.-- .....-|.|+.|++...
T Consensus 36 T~Cd~C~~~lWGl---~kqp~G~~C~~C~~~~H 65 (84)
T 2row_A 36 TNCEACMKPLWHM---FKPPPALECRRCHIKCH 65 (84)
T ss_dssp EECSSSSSEECCS---SSCCCEEEESSSCCEEE
T ss_pred cchhhcCHhhhcc---ccCCCCCEecCCCCccc
Confidence 4899999998854 11123799999998643
No 117
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=56.68 E-value=13 Score=28.47 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=25.4
Q ss_pred CcccCCCCCCCceEEEEeccCC--CCCCceEEEEecCCCCCccccC
Q 033869 67 TEVTCPACKHGKAVYHELQTRS--ADEPMSIFYMCANKNCKHRWNE 110 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~Rs--aDE~~T~fY~C~~~~C~~~wre 110 (110)
+...||.||++... ....+.- -.|=+-.-|.|.+ |||+..|
T Consensus 219 ~~s~Cp~C~~~~~t-~~~~~~IP~F~eViims~~C~~--CGyr~ne 261 (404)
T 2qkd_A 219 FNTNCPECNAPAQT-NMKLVQIPHFKEVIIMATNCEN--CGHRTNE 261 (404)
T ss_dssp EEECCTTTCCTTCE-EEEEECCTTSCCEEEEEEECSS--SCCEEEE
T ss_pred ecccCccCCCccEE-EEEEEeCCCCCcEEEEEEECCC--CCCcccc
Confidence 35689999976432 2222332 2333555689999 9998653
No 118
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.47 E-value=4.8 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.625 Sum_probs=20.9
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|.-- ...-+.|..|++...
T Consensus 29 t~C~~C~~~lwGl-----~kqG~~C~~C~~~~H 56 (74)
T 2db6_A 29 KFCDVCARMIVLN-----NKFGLRCKNCKTNIH 56 (74)
T ss_dssp EECSSSCCEECHH-----HHEEEEESSSCCEEC
T ss_pred cCchhcChhhccc-----cCCccccCCCCCccC
Confidence 4899999999742 123799999998654
No 119
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=54.72 E-value=5.3 Score=19.83 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.3
Q ss_pred eEEEEecCCCCCcc
Q 033869 94 SIFYMCANKNCKHR 107 (110)
Q Consensus 94 T~fY~C~~~~C~~~ 107 (110)
..||+|.. ||+.
T Consensus 4 ~~fY~C~~--CGni 15 (36)
T 1dxg_A 4 GDVYKCEL--CGQV 15 (36)
T ss_dssp TCEEECTT--TCCE
T ss_pred ccEEEcCC--CCcE
Confidence 45899988 9863
No 120
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=53.41 E-value=11 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.494 Sum_probs=19.3
Q ss_pred cccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcc
Q 033869 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHR 107 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~ 107 (110)
...||.||...+ |+... .| + +.|=+ ||+.
T Consensus 14 ~~~CP~Cg~~d~-~~~~~-----dg-~--~~C~~--Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFS-----DG-H--TFCYV--CEKW 42 (255)
T ss_dssp EECCSSSCCSSC-EEEET-----TS-C--EEETT--TCCE
T ss_pred CCcCCCCCCCCC-ceEeC-----CC-C--eeccc--CCCc
Confidence 668999998554 22221 24 3 89988 9864
No 121
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=52.00 E-value=8.9 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=21.8
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
.|+. |++|.+. . -..+.|+.||..+..+
T Consensus 171 ~c~~-g~~m~~~--~---~~~m~cp~cg~~E~RK 198 (209)
T 2nn6_I 171 HSES-GIQMVPI--S---WCEMQCPKTHTKEFRK 198 (209)
T ss_dssp BCSS-SCBCEEE--E---TTEEECTTTTCCBCCC
T ss_pred EcCC-CCEEEEc--c---CCEEECCCCCCEEeec
Confidence 6888 8888886 2 2489999999987654
No 122
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=51.73 E-value=9.1 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=20.8
Q ss_pred CCCcCCCCCcc-cccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQ-YELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~-~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+.+|. .- .-.+.|+.||+...
T Consensus 358 t~C~~C~~~~~g~~------~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 358 TSCKACQMLLRGTF------YQGYRCYRCRAPAH 385 (406)
T ss_dssp CBCTTTCCBCCSSS------SCEEEETTTCCEEC
T ss_pred CCCccccchhceeC------CCCCCCCCCcCccc
Confidence 48999999996 32 23789999998644
No 123
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=49.41 E-value=4.8 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.820 Sum_probs=13.7
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
|+.|+.||..-. + -.|+.||-.-
T Consensus 5 mr~C~~Cg~YTL-k---------~~CP~CG~~t 27 (60)
T 2aus_D 5 IRKCPKCGRYTL-K---------ETCPVCGEKT 27 (60)
T ss_dssp CEECTTTCCEES-S---------SBCTTTCSBC
T ss_pred ceECCCCCCEEc-c---------ccCcCCCCcc
Confidence 567888864322 2 1378888643
No 124
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=47.87 E-value=6.8 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.697 Sum_probs=18.1
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.||.||+--+-. ....|..|||..
T Consensus 18 lCrRCG~~sfH~-------qK~~CgkCGYpa 41 (97)
T 2zkr_2 18 LCRRCGSKAYHL-------QKSTCGKCGYPA 41 (97)
T ss_dssp CCTTTCSSCEET-------TSCCBTTTCTTT
T ss_pred cCCCCCCccCcC-------ccccCcccCCch
Confidence 799999875532 256899999953
No 125
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=47.66 E-value=4.3 Score=27.71 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.8
Q ss_pred CCCceEEcCCCCC
Q 033869 19 DRPSRFSCPACPY 31 (110)
Q Consensus 19 ~~~~~~~C~~C~y 31 (110)
..+++|.|.+|+.
T Consensus 120 ~D~~~wyc~~c~~ 132 (176)
T 1zvf_A 120 NDKIRWYCSHCRQ 132 (176)
T ss_dssp CCEEEEECTTTCC
T ss_pred ccceEEEcCCCCC
Confidence 4578999999985
No 126
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=45.52 E-value=4.9 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.3
Q ss_pred eEEcCCCCCeeee
Q 033869 23 RFSCPACPYVCNM 35 (110)
Q Consensus 23 ~~~C~~C~y~~~~ 35 (110)
.+.|..|+....+
T Consensus 37 ~I~CnDC~~~s~v 49 (79)
T 2k2d_A 37 DILCNDCNGRSTV 49 (79)
T ss_dssp EEEESSSCCEEEE
T ss_pred EEECCCCCCCccC
Confidence 4566666655443
No 127
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=45.16 E-value=15 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=14.1
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..++++.|.+||.+ ..+|
T Consensus 57 ~~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 57 SEALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp TTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCCCccCccc
Confidence 55789999999965 5566
No 128
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=44.44 E-value=3 Score=26.39 Aligned_cols=86 Identities=15% Similarity=0.357 Sum_probs=45.7
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeeeeCCceEEEEecccCccccccccccccccCCCCCcccCCCCCCCceEE
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCNMESRVKIKRKQPLSKKEIQPIFTQDAMMEGPQTEVTCPACKHGKAVY 81 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CpkCg~~~a~~ 81 (110)
.+|..||..-.|.=-++. ...+.|..||-....... .+-..+.+.. ..........|-.||-.+.
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~-~g~~lCnaCgl~~Kl~G~----nRP~~KpKKR--------~~~~~~~~~~C~~C~t~~t-- 70 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDG-TGHYLCNACGLYHKMNGQ----NRPLIKPKRR--------LSAARRAGTSCANCQTTTT-- 70 (115)
T ss_dssp CCCTTTCCSCCSSCEECT-TSCEECHHHHHHHHHHSS----CCCCSSCCCC--------CCCCCCTTCCCTTTCCSCC--
T ss_pred CCCCCCCCccCCcceECC-CCCCcCcchhhhhhhccc----cccccccccc--------ccccccccccCCCcCCCCc--
Confidence 479999987777321222 236899999953332220 0000000000 0001234578999997763
Q ss_pred EEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 82 HELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 82 ~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
-+-|...+|. ..|-. ||-.|+
T Consensus 71 --p~WRr~~~g~---~lCNa--Cgl~~~ 91 (115)
T 4hc9_A 71 --TLWRRNANGD---PVCNA--CGLYYK 91 (115)
T ss_dssp --SSCEECTTSC---EECHH--HHHHHH
T ss_pred --ceeEECCCCC---CcchH--HHHHHH
Confidence 3345677775 44877 876553
No 129
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.01 E-value=6.3 Score=22.17 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=13.2
Q ss_pred CCCCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 1 MEFCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 1 M~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
|+.||.||..=. + -.|+.||..-
T Consensus 6 mr~C~~CgvYTL-k---------~~CP~CG~~T 28 (60)
T 2apo_B 6 MKKCPKCGLYTL-K---------EICPKCGEKT 28 (60)
T ss_dssp CEECTTTCCEES-S---------SBCSSSCSBC
T ss_pred ceeCCCCCCEec-c---------ccCcCCCCcC
Confidence 457888864322 2 2378888643
No 130
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=43.88 E-value=13 Score=19.58 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=5.7
Q ss_pred eEEcCCCCCee
Q 033869 23 RFSCPACPYVC 33 (110)
Q Consensus 23 ~~~C~~C~y~~ 33 (110)
.|.|..||...
T Consensus 39 ~~~C~~C~k~f 49 (62)
T 1vd4_A 39 TFRCTFCHTEV 49 (62)
T ss_dssp EEBCSSSCCBC
T ss_pred CEECCCCCCcc
Confidence 45555555543
No 131
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=42.59 E-value=14 Score=24.37 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.5
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..|+++.|.+||.+ ..+|
T Consensus 86 m~RtEV~C~~Cg~HLGHVF 104 (144)
T 3e0o_A 86 MIRTEVRSRTADSHLGHVF 104 (144)
T ss_dssp SCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEcCCCCCccCCcc
Confidence 56889999999955 6666
No 132
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=42.52 E-value=14 Score=20.43 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCcC--CCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 3 FCPT--CGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 3 FCp~--C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
-|.. |...|.|-..=+.+...|.|.-|+...++..
T Consensus 11 RC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 11 LCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp BCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred ccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 4766 9999888622223345899999998877654
No 133
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.28 E-value=5.3 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCcCCCCCcccccCCC--CCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHM--DRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~--~~~~~~~C~~C~y~~~~~ 36 (110)
-|.-|+..|+|..-.. .+...+.|+.||..-...
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 4888999998853221 234589999999754433
No 134
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=40.28 E-value=4.2 Score=27.73 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=10.6
Q ss_pred CCCceEEcCCCCC
Q 033869 19 DRPSRFSCPACPY 31 (110)
Q Consensus 19 ~~~~~~~C~~C~y 31 (110)
..+++|.|.+|+.
T Consensus 118 ~d~~~wyc~~c~~ 130 (174)
T 1yfu_A 118 LDGFEWYCDACGH 130 (174)
T ss_dssp CEEEEEECTTTCC
T ss_pred ccceEEEcCCCCC
Confidence 3478999999985
No 135
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=40.25 E-value=5.5 Score=27.16 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=11.1
Q ss_pred CCCcCCCCCcccc
Q 033869 2 EFCPTCGTMLQYE 14 (110)
Q Consensus 2 ~FCp~C~nlL~~~ 14 (110)
.||+.||+-|+..
T Consensus 99 ~FC~~CGs~l~~~ 111 (196)
T 1x6m_A 99 HRCRDCGVHMYGR 111 (196)
T ss_dssp EEETTTCCEEEEE
T ss_pred EECCCCCCcCCcc
Confidence 4999999998765
No 136
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=38.08 E-value=14 Score=24.60 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=14.5
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..|+++.|.+||.+ ..||
T Consensus 95 m~RtEV~C~~Cg~HLGHVF 113 (154)
T 3hcj_A 95 MIRTEIVCARCDSHLGHVF 113 (154)
T ss_dssp TSCEEEEETTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCccCCcc
Confidence 56899999999955 6676
No 137
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.35 E-value=15 Score=18.47 Aligned_cols=32 Identities=16% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCcCCCCCcccccC------CCCCCceEEcCCCCCeee
Q 033869 3 FCPTCGTMLQYELP------HMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~C~nlL~~~~~------~~~~~~~~~C~~C~y~~~ 34 (110)
-|+.||........ .-.....|.|..|+....
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 37888876433200 012234699999998654
No 138
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=36.44 E-value=7 Score=20.69 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=23.6
Q ss_pred cccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 68 EVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 68 ~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
...|..||-.+ +-+-|+..+|. +.|-. ||-.|+
T Consensus 4 ~~~C~~C~tt~----Tp~WR~gp~G~---~LCNa--CGl~~k 36 (46)
T 1gnf_A 4 ARECVNCGATA----TPLWRRDRTGH---YLCNA--CGLYHK 36 (46)
T ss_dssp SCCCTTTCCCC----CSSCBCCTTCC---CBCSH--HHHHHH
T ss_pred CCCCCCcCCCC----CCcCccCCCCC---ccchH--HHHHHH
Confidence 45799999775 45567777886 57877 877664
No 139
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.30 E-value=16 Score=15.03 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=6.9
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|+
T Consensus 4 ~~C~~--C~k~f~ 14 (27)
T 2kvh_A 4 FSCSL--CPQRSR 14 (27)
T ss_dssp EECSS--SSCEES
T ss_pred ccCCC--cChhhC
Confidence 66766 766554
No 140
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=36.02 E-value=11 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.720 Sum_probs=8.9
Q ss_pred CCcCCCCCcccc
Q 033869 3 FCPTCGTMLQYE 14 (110)
Q Consensus 3 FCp~C~nlL~~~ 14 (110)
.||+||..+...
T Consensus 11 ~C~~C~~~i~~~ 22 (39)
T 2i5o_A 11 PCEKCGSLVPVW 22 (39)
T ss_dssp ECTTTCCEEEGG
T ss_pred ccccccCcCCcc
Confidence 488888877664
No 141
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=35.90 E-value=3.9 Score=29.98 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=21.2
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~ 35 (110)
=||.|+.+||.++- ..+..+|+.|+|....
T Consensus 26 kc~~~~~~~~~~~l---~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 26 KCDSCGQVLYRAEL---ERNLEVCPKCDHHMRM 55 (304)
T ss_dssp CCTTTCCCEETTHH---HHTTTBCTTTCCBCCC
T ss_pred hhhhccchhhHHHH---HHHhCCCCCCCCCCCC
Confidence 48999999988721 1246789999986543
No 142
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=35.86 E-value=18 Score=18.44 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=19.1
Q ss_pred CCcCCCCCcccccC------CCCCCceEEcCCCCCeeee
Q 033869 3 FCPTCGTMLQYELP------HMDRPSRFSCPACPYVCNM 35 (110)
Q Consensus 3 FCp~C~nlL~~~~~------~~~~~~~~~C~~C~y~~~~ 35 (110)
-|+.|+........ .-.....|.|..|++....
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 47888866432200 1122346999999986543
No 143
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=35.83 E-value=13 Score=17.61 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=5.7
Q ss_pred CCCCCcccc
Q 033869 6 TCGTMLQYE 14 (110)
Q Consensus 6 ~C~nlL~~~ 14 (110)
+|||+|...
T Consensus 2 d~gnilpsd 10 (31)
T 2agh_C 2 DDGNILPSD 10 (31)
T ss_dssp CCCCSSCHH
T ss_pred CccccChHH
Confidence 577777543
No 144
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=35.31 E-value=22 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=19.5
Q ss_pred CCcC--CCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 3 FCPT--CGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 3 FCp~--C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
-||. |+.-+... . ...|.|..|+...+
T Consensus 45 aC~~~~CnKKv~~~--~---~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKKVIDQ--Q---NGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCBCEEE--T---TTEEEETTTTEEES
T ss_pred CCCchhcCCccccC--C---CCeEECCCCCCcCC
Confidence 4899 99987643 1 24899999986543
No 145
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.24 E-value=9.7 Score=23.23 Aligned_cols=11 Identities=55% Similarity=1.204 Sum_probs=7.5
Q ss_pred CcCCCCCcccc
Q 033869 4 CPTCGTMLQYE 14 (110)
Q Consensus 4 Cp~C~nlL~~~ 14 (110)
||-||+-|.+.
T Consensus 50 CPvCgs~l~~~ 60 (112)
T 1l8d_A 50 CPVCGRELTDE 60 (112)
T ss_dssp CTTTCCEECHH
T ss_pred CCCCCCcCCHH
Confidence 77777776653
No 146
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=33.89 E-value=15 Score=28.34 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=20.2
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
..|..||.++++. . ....+.|+.|+..
T Consensus 6 ~VC~~CG~~~~~~--~--~~~~~~C~~C~~~ 32 (436)
T 3qqc_A 6 WVCENCGHIALED--K--RRRRVYCPVCGEE 32 (436)
T ss_dssp EEETTTCCBCEEE--T--TTTEEECTTTCCS
T ss_pred EEeCCCCceeeec--c--ccCccCCCCCCCC
Confidence 4699999998864 2 2346899999863
No 147
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.06 E-value=33 Score=19.44 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=6.8
Q ss_pred eEEcCCCCCee
Q 033869 23 RFSCPACPYVC 33 (110)
Q Consensus 23 ~~~C~~C~y~~ 33 (110)
-|.|+ ||...
T Consensus 29 ~f~Cr-Cg~~F 38 (64)
T 1wfh_A 29 GFMCR-CGTTF 38 (64)
T ss_dssp CEECS-SSCEE
T ss_pred CEEee-cCCEe
Confidence 48884 88653
No 148
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=32.50 E-value=17 Score=24.43 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.5
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..++++.|.+||.+ ..+|
T Consensus 118 m~RtEV~C~~Cg~HLGHVF 136 (164)
T 3cxk_A 118 MTRVEVRCNQCGAHLGHVF 136 (164)
T ss_dssp CCEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCCccCccc
Confidence 56889999999955 6666
No 149
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.95 E-value=38 Score=19.73 Aligned_cols=21 Identities=24% Similarity=0.692 Sum_probs=12.7
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
|..|+.-|-+- -|.|+ ||...
T Consensus 28 C~~CrKkvgL~--------gf~Cr-Cg~~F 48 (74)
T 1wfl_A 28 CFMCRKKVGLT--------GFDCR-CGNLF 48 (74)
T ss_dssp CSSSCCBCGGG--------CEECT-TSCEE
T ss_pred ChhhCCccccc--------CeecC-CCCEe
Confidence 55555544443 48888 88653
No 150
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.83 E-value=23 Score=14.54 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=6.6
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 4 ~~C~~--C~k~f~ 14 (28)
T 2kvf_A 4 YSCSV--CGKRFS 14 (28)
T ss_dssp EECSS--SCCEES
T ss_pred ccCCC--CCcccC
Confidence 56666 666553
No 151
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=30.73 E-value=12 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.3
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..|+++.|.+||.+ ..+|
T Consensus 88 m~RtEV~C~~Cg~HLGHVF 106 (146)
T 3hcg_A 88 MRRTEVRSHAADSHLGHVF 106 (146)
T ss_dssp EEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCCccCcee
Confidence 45789999999955 6677
No 152
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.68 E-value=21 Score=14.83 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=6.9
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 4 ~~C~~--C~k~f~ 14 (27)
T 2kvg_A 4 YRCPL--CRAGCP 14 (27)
T ss_dssp EEETT--TTEEES
T ss_pred cCCCC--CCcccC
Confidence 66766 766553
No 153
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=30.60 E-value=24 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.580 Sum_probs=14.3
Q ss_pred ceEEcCCCCCeeeeCC
Q 033869 22 SRFSCPACPYVCNMES 37 (110)
Q Consensus 22 ~~~~C~~C~y~~~~~~ 37 (110)
..+.|+.||..+++.+
T Consensus 98 G~L~Cp~cgr~ypI~~ 113 (125)
T 3q87_A 98 GSLRCDMCGLIYPIKG 113 (125)
T ss_dssp EEEEETTTCCEEEEET
T ss_pred EEEECCCCCCEeeccC
Confidence 4799999999999887
No 154
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.35 E-value=45 Score=18.76 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=16.7
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
-|..|+.-..+- .-...||.||...
T Consensus 13 ~C~~C~~~F~~~------~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLL------NRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTT------BCCEECTTTCCEE
T ss_pred cccCCCCccCCc------cccccCCCCCEEE
Confidence 477788655443 2268899999764
No 155
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=30.24 E-value=20 Score=18.63 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=4.4
Q ss_pred CCCCCcccc
Q 033869 6 TCGTMLQYE 14 (110)
Q Consensus 6 ~C~nlL~~~ 14 (110)
.|+++=+..
T Consensus 21 ~C~~~Nfa~ 29 (45)
T 1n0z_A 21 KCGNVNFAR 29 (45)
T ss_dssp TTCCBCCSS
T ss_pred CCCCEEccc
Confidence 455554444
No 156
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=30.07 E-value=9.5 Score=19.85 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=21.5
Q ss_pred cCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 70 TCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 70 ~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
.|-.|+-.+ +-+-|+..+|. +.|-. ||-.|+
T Consensus 3 ~C~~C~tt~----Tp~WR~gp~G~---~LCNa--CGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQT----TPLWRRNPEGQ---PLCNA--CGLFLK 33 (43)
T ss_dssp CCSSSCCCC----CSCCEECTTSC---EECHH--HHHHHH
T ss_pred cCCccCCCC----CCccccCCCCC---cccHH--HHHHHH
Confidence 588888765 34456677776 67877 887664
No 157
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=30.06 E-value=23 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.678 Sum_probs=15.4
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPA 28 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~ 28 (110)
=||.|+.-|... + ..|.|+.
T Consensus 80 ~CP~C~G~l~y~--~----~~Y~C~G 99 (160)
T 2riq_A 80 PCEECSGQLVFK--S----DAYYCTG 99 (160)
T ss_dssp CCTTTCCCEEEE--T----TEEEECC
T ss_pred CCCCCCCEEEEe--C----CeEEECC
Confidence 499999877776 2 5899983
No 158
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=29.52 E-value=38 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.||..|+++|.-. ...-+.|..|++...
T Consensus 221 t~C~~C~~~l~g~-----~~qg~~C~~C~~~~H 248 (463)
T 3cxl_A 221 HWCEYCANFMWGL-----IAQGVKCADCGLNVH 248 (463)
T ss_dssp CBCTTTCCBCCSS-----SCCEEEETTTCCEEC
T ss_pred CcchhhhhhhhhH-----HhcCeeccccCcccc
Confidence 5899999998532 124689999998654
No 159
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.66 E-value=27 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=6.2
Q ss_pred eEEcCCCCCee
Q 033869 23 RFSCPACPYVC 33 (110)
Q Consensus 23 ~~~C~~C~y~~ 33 (110)
.|.|..|+...
T Consensus 45 ~~~C~~C~k~f 55 (74)
T 2lce_A 45 PYRCNICGAQF 55 (74)
T ss_dssp SEECTTTCCEE
T ss_pred CEECCCCCchh
Confidence 46666666543
No 160
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=28.52 E-value=23 Score=14.54 Aligned_cols=11 Identities=45% Similarity=1.274 Sum_probs=6.9
Q ss_pred EEec--CCCCCcccc
Q 033869 97 YMCA--NKNCKHRWN 109 (110)
Q Consensus 97 Y~C~--~~~C~~~wr 109 (110)
|.|. . |+..|.
T Consensus 3 ~~C~~~~--C~k~f~ 15 (29)
T 2ab3_A 3 YVCHFEN--CGRSFN 15 (29)
T ss_dssp EEECSTT--TCEEES
T ss_pred CCCcCCc--CcCccC
Confidence 6676 5 776553
No 161
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.47 E-value=15 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=14.6
Q ss_pred CCCCcccCCCCCCC-ceEE
Q 033869 64 GPQTEVTCPACKHG-KAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~~-~a~~ 81 (110)
..++++.|.+||.+ ..+|
T Consensus 106 m~RtEV~C~~Cg~HLGHVF 124 (151)
T 2k8d_A 106 MVRCEVLCARCDAHLGHVF 124 (151)
T ss_dssp SCEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEeCCCCCcCCccc
Confidence 46789999999954 7777
No 162
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.95 E-value=28 Score=14.27 Aligned_cols=10 Identities=30% Similarity=1.228 Sum_probs=5.8
Q ss_pred EEecCCCCCccc
Q 033869 97 YMCANKNCKHRW 108 (110)
Q Consensus 97 Y~C~~~~C~~~w 108 (110)
|.|.. |+..+
T Consensus 3 ~~C~~--C~k~f 12 (29)
T 1rik_A 3 FACPE--CPKRF 12 (29)
T ss_dssp EECSS--SSCEE
T ss_pred ccCCC--CCchh
Confidence 55665 66554
No 163
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=27.90 E-value=16 Score=26.79 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=16.6
Q ss_pred Cc--CCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 4 CP--TCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 4 Cp--~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
|+ .||..+.-. ...++..|.|+.|....
T Consensus 250 C~~~~CG~~I~~~--~~~gR~t~~CP~CQ~~~ 279 (310)
T 3twl_A 250 GKAFVDGKKIDFI--TAGGRTTAYVPELQKLY 279 (310)
T ss_dssp TSCEETTEECEEC--CE------ECTTTCCCC
T ss_pred CCCCCCCCeEEEE--EECCcccEECCCCcCCC
Confidence 77 899876555 44567899999999743
No 164
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.69 E-value=27 Score=14.32 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=5.9
Q ss_pred EEecCCCCCccc
Q 033869 97 YMCANKNCKHRW 108 (110)
Q Consensus 97 Y~C~~~~C~~~w 108 (110)
|.|.. |+..|
T Consensus 4 ~~C~~--C~~~f 13 (30)
T 2m0d_A 4 YQCDY--CGRSF 13 (30)
T ss_dssp EECTT--TCCEE
T ss_pred ccCCC--CCccc
Confidence 56665 66554
No 165
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.17 E-value=53 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.568 Sum_probs=16.5
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|..|+.-..+- .-...||.||...
T Consensus 21 ~C~~C~~~Fs~~------~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 21 HCRQCEKEFSIS------RRKHHCRNCGHIF 45 (82)
T ss_dssp BCTTTCCBCBTT------BCCEECTTTCCEE
T ss_pred cccCcCCcccCc------cccccCCCCCCEE
Confidence 577777665543 2267889988754
No 166
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=26.65 E-value=20 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.2
Q ss_pred CcccCCCCCCCceE
Q 033869 67 TEVTCPACKHGKAV 80 (110)
Q Consensus 67 ~~~~CpkCg~~~a~ 80 (110)
...+||+||.+..+
T Consensus 51 mhakcprcgaegsv 64 (131)
T 2x5c_A 51 MHAKCPRCGAEGSV 64 (131)
T ss_dssp CEEECTTTSCEEEE
T ss_pred eeccCCCCCCccce
Confidence 57899999986654
No 167
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.63 E-value=55 Score=20.52 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=17.2
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|..|+.-..+- .-...||.||.+.
T Consensus 71 ~C~~C~~~Fs~~------~RrHHCR~CG~vf 95 (125)
T 1joc_A 71 NCMACGKGFSVT------VRRHHCRQCGNIF 95 (125)
T ss_dssp BCTTTCCBCCSS------SCCEECTTTCCEE
T ss_pred CCcCcCCccccc------cccccCCCCCeEE
Confidence 588888765543 2268899999754
No 168
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.51 E-value=14 Score=15.14 Aligned_cols=10 Identities=40% Similarity=1.348 Sum_probs=5.5
Q ss_pred EEecCCCCCccc
Q 033869 97 YMCANKNCKHRW 108 (110)
Q Consensus 97 Y~C~~~~C~~~w 108 (110)
|.|.. |+..|
T Consensus 3 ~~C~~--C~k~f 12 (26)
T 2lvu_A 3 YVCER--CGKRF 12 (26)
Confidence 55655 65544
No 169
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.31 E-value=51 Score=18.59 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.2
Q ss_pred eEEcCCCCCee
Q 033869 23 RFSCPACPYVC 33 (110)
Q Consensus 23 ~~~C~~C~y~~ 33 (110)
.|.| .||...
T Consensus 29 ~f~C-rCg~~F 38 (64)
T 1wg2_A 29 GFKC-KCGSTF 38 (64)
T ss_dssp CEEC-TTSCEE
T ss_pred CeEe-ecCCEe
Confidence 5889 588754
No 170
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.26 E-value=61 Score=17.44 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=15.6
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCC
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACP 30 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~ 30 (110)
.+|+.|+..... ....+.|..|.
T Consensus 7 ~~C~~C~~~~~~------~~~mI~Cd~C~ 29 (64)
T 1we9_A 7 GQCGACGESYAA------DEFWICCDLCE 29 (64)
T ss_dssp CCCSSSCCCCCS------SSCEEECSSSC
T ss_pred CCCCCCCCccCC------CCCEEEccCCC
Confidence 478888764321 24688999997
No 171
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.52 E-value=28 Score=16.34 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=9.3
Q ss_pred CCcCCCCCcccc
Q 033869 3 FCPTCGTMLQYE 14 (110)
Q Consensus 3 FCp~C~nlL~~~ 14 (110)
-|+.||...|+-
T Consensus 5 ~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 5 NCARCGKIVYPT 16 (31)
T ss_dssp BCSSSCSBCCGG
T ss_pred cCCccCCEEecc
Confidence 488888888776
No 172
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=25.27 E-value=40 Score=19.99 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=13.1
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCeeeeCC
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYVCNMES 37 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~~ 37 (110)
|..|+-++..+ .|++|+.....++
T Consensus 26 C~~C~~v~~~d----------~CPnCgs~~~T~~ 49 (81)
T 3p8b_A 26 CRHCHYITSED----------RCPVCGSRDLSEE 49 (81)
T ss_dssp ETTTCBEESSS----------SCTTTCCCCEESC
T ss_pred HhhCCCccCCC----------CCCCCCCCccCCc
Confidence 66666664221 2777776543333
No 173
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=25.18 E-value=13 Score=20.95 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 66 QTEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 66 ~~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
+....|-.||-.+ +-+-|...+|. +.|-. ||-.|+
T Consensus 5 ~~~~~C~~C~tt~----Tp~WR~gp~G~---~LCNA--CGl~~~ 39 (63)
T 3dfx_A 5 RAGTSCANCQTTT----TTLWRRNANGD---PVCNA--CGLYYK 39 (63)
T ss_dssp CTTCCCTTTCCSC----CSSCCCCTTSC---CCCHH--HHHHHH
T ss_pred CCCCcCCCcCCCC----CCccCCCCCCC---chhhH--HHHHHH
Confidence 3466899999775 45567888887 57877 876664
No 174
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.93 E-value=26 Score=20.30 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=6.6
Q ss_pred eEEcCCCCCeee
Q 033869 23 RFSCPACPYVCN 34 (110)
Q Consensus 23 ~~~C~~C~y~~~ 34 (110)
.+.|..||....
T Consensus 28 ~h~C~~Cgk~F~ 39 (85)
T 2lv2_A 28 CHLCPVCGESFA 39 (85)
T ss_dssp TEECTTSCCEES
T ss_pred CEECCCCCCCcC
Confidence 456666665433
No 175
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=24.68 E-value=36 Score=22.31 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=14.6
Q ss_pred CCCCcccCCCCCC-CceEE
Q 033869 64 GPQTEVTCPACKH-GKAVY 81 (110)
Q Consensus 64 ~~~~~~~CpkCg~-~~a~~ 81 (110)
..++++.|.+||. -..+|
T Consensus 89 m~RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 89 CPRMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp SCEEEEEESSSCCCCEEEE
T ss_pred ceEEEEEECCCCCcCCccc
Confidence 5688999999995 47777
No 176
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.62 E-value=34 Score=13.86 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=5.6
Q ss_pred EEecCCCCCccc
Q 033869 97 YMCANKNCKHRW 108 (110)
Q Consensus 97 Y~C~~~~C~~~w 108 (110)
|.|.. |+..|
T Consensus 3 ~~C~~--C~k~f 12 (29)
T 2m0f_A 3 LKCRE--CGKQF 12 (29)
T ss_dssp EECTT--TSCEE
T ss_pred ccCCC--CCCcc
Confidence 55655 65544
No 177
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.55 E-value=29 Score=23.85 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=20.3
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
-|..||..+.+. ....+.|..|+...+..
T Consensus 12 ~Cw~C~~~~~~~-----~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 12 RCWNCGGPWGPG-----REDRFFCPQCRALQAPD 40 (207)
T ss_dssp BCSSSCCBCCSS-----CSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCcccc-----cccccccccccccCCCC
Confidence 599999764322 13478899999887765
No 178
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=24.42 E-value=49 Score=24.71 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=23.2
Q ss_pred cccCCCCCCCc--eEEE-EeccCCCCC---C--ceEEEEecCCCCCcc
Q 033869 68 EVTCPACKHGK--AVYH-ELQTRSADE---P--MSIFYMCANKNCKHR 107 (110)
Q Consensus 68 ~~~CpkCg~~~--a~~~-~~Q~RsaDE---~--~T~fY~C~~~~C~~~ 107 (110)
.-.|+.||.+. ..+. -.....++| | -.-.|.|.+ ||+.
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~--C~~~ 164 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNR--CGNI 164 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETT--TCCE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCC--CCcc
Confidence 45899999875 3442 222223333 2 345699999 9874
No 179
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=24.39 E-value=41 Score=19.44 Aligned_cols=20 Identities=25% Similarity=0.796 Sum_probs=15.0
Q ss_pred CCCCCcccccCCCCCCceEEcCCCCC
Q 033869 6 TCGTMLQYELPHMDRPSRFSCPACPY 31 (110)
Q Consensus 6 ~C~nlL~~~~~~~~~~~~~~C~~C~y 31 (110)
.||.++.+- ...|.|++|+.
T Consensus 6 ~Cg~vf~~g------e~~Y~C~~C~~ 25 (75)
T 3ny3_A 6 LCGRVFKVG------EPTYSCRDCAV 25 (75)
T ss_dssp CCCCBCCTT------CEEEEETTTBS
T ss_pred ccCCcccCC------CEEEECccCCC
Confidence 466666655 56999999986
No 180
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=24.34 E-value=7.3 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=16.4
Q ss_pred CcCCCCCcccccCCCCCCceEEcCCCCCe
Q 033869 4 CPTCGTMLQYELPHMDRPSRFSCPACPYV 32 (110)
Q Consensus 4 Cp~C~nlL~~~~~~~~~~~~~~C~~C~y~ 32 (110)
||.|+.+||.++-. .+..+|+.|++.
T Consensus 33 c~~~~~~~y~~~l~---~~~~v~p~~~~~ 58 (285)
T 2f9i_B 33 CPKCKKIMYTKELA---ENLNVCFNCDHH 58 (285)
T ss_dssp CTTTCCEEEHHHHH---HTTTBCTTTCCB
T ss_pred hHhhCCccchhhhH---HhcCcCCCCCCC
Confidence 77777777775211 235677777773
No 181
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.14 E-value=19 Score=14.62 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=4.9
Q ss_pred EEecCCCCCccc
Q 033869 97 YMCANKNCKHRW 108 (110)
Q Consensus 97 Y~C~~~~C~~~w 108 (110)
|.|.. |+..+
T Consensus 2 ~~C~~--C~k~f 11 (27)
T 1znf_A 2 YKCGL--CERSF 11 (27)
T ss_dssp CBCSS--SCCBC
T ss_pred ccCCC--CCCcC
Confidence 44554 55444
No 182
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.72 E-value=34 Score=15.43 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.6
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|+
T Consensus 10 ~~C~~--C~k~f~ 20 (37)
T 2elm_A 10 YYCSQ--CHYSSI 20 (37)
T ss_dssp EECSS--SSCEEE
T ss_pred eECCC--CCcccC
Confidence 77777 777654
No 183
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=23.37 E-value=9.6 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=19.1
Q ss_pred cccCCCCCCCceEE--EEeccCCCCCCceEEEEecCCCCCccc
Q 033869 68 EVTCPACKHGKAVY--HELQTRSADEPMSIFYMCANKNCKHRW 108 (110)
Q Consensus 68 ~~~CpkCg~~~a~~--~~~Q~RsaDE~~T~fY~C~~~~C~~~w 108 (110)
...|+-||-.-+-| +..|+.-++++.+++|-.+. |...|
T Consensus 18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~--cm~~~ 58 (175)
T 2hpu_A 18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVR--DAIAY 58 (175)
T ss_dssp -----------------CEEEEETTCSSEEEESCHH--HHHHH
T ss_pred CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHH--HHHHH
Confidence 57999999765554 67788878888999998887 86555
No 184
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=23.36 E-value=45 Score=19.64 Aligned_cols=20 Identities=20% Similarity=0.690 Sum_probs=14.4
Q ss_pred CCCCCcccccCCCCCCceEEcCCCCC
Q 033869 6 TCGTMLQYELPHMDRPSRFSCPACPY 31 (110)
Q Consensus 6 ~C~nlL~~~~~~~~~~~~~~C~~C~y 31 (110)
.||.++.+. ...|.|+.|+.
T Consensus 10 ~Cg~vf~~g------e~~Y~C~~C~~ 29 (82)
T 3nis_A 10 NCGRKFKIG------EPLYRCHECGC 29 (82)
T ss_dssp CCCCBCCTT------CEEEEETTTBS
T ss_pred CCCCcccCC------CEEEEeeccCC
Confidence 466666655 46899999986
No 185
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=22.57 E-value=19 Score=20.46 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=24.4
Q ss_pred CcccCCCCCCCceEEEEeccCCCCCCceEEEEecCCCCCcccc
Q 033869 67 TEVTCPACKHGKAVYHELQTRSADEPMSIFYMCANKNCKHRWN 109 (110)
Q Consensus 67 ~~~~CpkCg~~~a~~~~~Q~RsaDE~~T~fY~C~~~~C~~~wr 109 (110)
....|-.||-.+ +-+-|...+|. +.|-. ||-.|+
T Consensus 8 ~~~~C~~C~t~~----Tp~WR~gp~G~---~LCNa--CGl~~~ 41 (66)
T 4gat_A 8 GPTTCTNCFTQT----TPLWRRNPEGQ---PLCNA--CGLFLK 41 (66)
T ss_dssp SSCCCTTTCCCC----CSSCEEETTTE---EECHH--HHHHHH
T ss_pred CCCCCCCCCCCC----CCcCCcCCCCC---CccHH--HHHHHH
Confidence 457899999876 44556777776 66877 876664
No 186
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.15 E-value=66 Score=19.15 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=7.3
Q ss_pred eEEcCCCCCee
Q 033869 23 RFSCPACPYVC 33 (110)
Q Consensus 23 ~~~C~~C~y~~ 33 (110)
-|.|+ ||...
T Consensus 40 ~f~Cr-Cg~~F 49 (85)
T 1wff_A 40 SFECR-CGNNF 49 (85)
T ss_dssp CEECT-TCCEE
T ss_pred CeEcC-CCCEe
Confidence 58886 88754
No 187
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.02 E-value=64 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.643 Sum_probs=14.7
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|+.|+.-...- .-...||.||...
T Consensus 163 ~C~~C~~~F~~~------~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 163 VCHRCRVEFTFT------NRKHHCRNCGQVF 187 (220)
T ss_dssp BCTTTCCBCCSS------SCCEECTTTCCEE
T ss_pred ccCCCCCccCCc------ccccccCCcCCEE
Confidence 466776554433 1257788888653
No 188
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.99 E-value=41 Score=14.79 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.0
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (36)
T 2elq_A 10 FKCSL--CEYATR 20 (36)
T ss_dssp EECSS--SSCEES
T ss_pred ccCCC--CCchhC
Confidence 66766 766553
No 189
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.98 E-value=78 Score=18.22 Aligned_cols=25 Identities=32% Similarity=0.782 Sum_probs=15.4
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|..|+.-..+- .-.-.||.||...
T Consensus 23 ~C~~C~~~Fs~~------~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 23 ACNGCGCVFTTT------VRRHHCRNCGYVL 47 (84)
T ss_dssp BCTTTCCBCCTT------SCCEECTTTCCEE
T ss_pred CCcCcCCccccc------hhcccccCCCcEE
Confidence 466777654443 1267888888753
No 190
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=40 Score=14.84 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=6.9
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (36)
T 2elv_A 10 YDCHI--CERKFK 20 (36)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CCCccC
Confidence 66766 766553
No 191
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=21.50 E-value=50 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCeeeeC
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVCNME 36 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 36 (110)
-|..|+..|.|--.=..++..|.|.-|+...+..
T Consensus 114 RC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P 147 (810)
T 1pcx_A 114 RCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 147 (810)
T ss_dssp BCTTTCCBCCTTCEEETTTTEEECTTTCCEEECC
T ss_pred ccCCccCEecCceEEeCCCCEEEccCCCCcCCCc
Confidence 5999999998862223445699999999987653
No 192
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.47 E-value=93 Score=18.20 Aligned_cols=25 Identities=16% Similarity=0.483 Sum_probs=17.2
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|..|+.-..+- .-.-.||.||.+.
T Consensus 11 ~C~~C~~~F~~~------~RrHHCR~CG~vf 35 (88)
T 1wfk_A 11 RCYGCAVKFTLF------KKEYGCKNCGRAF 35 (88)
T ss_dssp BCTTTCCBCCSS------SCEEECSSSCCEE
T ss_pred CCcCcCCcccCc------cccccCCCCCCEE
Confidence 588888765544 2268899998764
No 193
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.42 E-value=41 Score=14.51 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=6.9
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 8 ~~C~~--C~k~f~ 18 (35)
T 2elx_A 8 YVCAL--CLKKFV 18 (35)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CcchhC
Confidence 66766 766553
No 194
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.36 E-value=45 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.705 Sum_probs=19.6
Q ss_pred CCcC--CCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPT--CGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~--C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
-||. |+.-+... . ...|.|..|+...
T Consensus 310 aC~~~~C~kkv~~~--~---~g~~~C~~C~~~~ 337 (444)
T 4gop_C 310 ACASEGCNKKVNLD--H---ENNWRCEKCDRSY 337 (444)
T ss_dssp ECCSTTCCCBEEEC--T---TSCEEETTTTEEE
T ss_pred cCCcccCCCccccC--C---CccEECCCCCCcC
Confidence 4898 99988764 2 2489999999653
No 195
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.10 E-value=96 Score=17.77 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=16.5
Q ss_pred CCcCCCCCcccccCCCCCCceEEcCCCCCee
Q 033869 3 FCPTCGTMLQYELPHMDRPSRFSCPACPYVC 33 (110)
Q Consensus 3 FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~ 33 (110)
.|..|+.-..+- .-.-.||.||.+.
T Consensus 16 ~C~~C~~~F~~~------~RrHHCR~CG~vf 40 (84)
T 1x4u_A 16 NCTGCSATFSVL------KKRRSCSNCGNSF 40 (84)
T ss_dssp SCSSSCCCCCSS------SCCEECSSSCCEE
T ss_pred cCcCcCCccccc------hhhhhhcCCCcEE
Confidence 577787654443 2267899998764
No 196
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.07 E-value=42 Score=14.57 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=7.1
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|+
T Consensus 8 ~~C~~--C~k~f~ 18 (35)
T 1srk_A 8 FVCRI--CLSAFT 18 (35)
T ss_dssp EECSS--SCCEES
T ss_pred eeCCC--CCcccC
Confidence 67766 766553
No 197
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.80 E-value=81 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=20.7
Q ss_pred CCCcCCCCCcccccCCCCCCceEEcCCCCCeee
Q 033869 2 EFCPTCGTMLQYELPHMDRPSRFSCPACPYVCN 34 (110)
Q Consensus 2 ~FCp~C~nlL~~~~~~~~~~~~~~C~~C~y~~~ 34 (110)
.|||-|+......+ .....+.|..|..=..
T Consensus 3 ~~CpiC~k~Y~~~~---~~~~MIqCd~C~~W~H 32 (183)
T 3lqh_A 3 NFCPLCDKCYDDDD---YESKMMQCGKCDRWVH 32 (183)
T ss_dssp CBCTTTCCBCTTCC---TTCCEEECTTTCCEEE
T ss_pred CcCCCCcCccCCcc---cCCCeEECCCCCcccc
Confidence 58999987655541 1345899999986443
No 198
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=44 Score=14.81 Aligned_cols=11 Identities=18% Similarity=0.615 Sum_probs=6.9
Q ss_pred EEecCCCCCcccc
Q 033869 97 YMCANKNCKHRWN 109 (110)
Q Consensus 97 Y~C~~~~C~~~wr 109 (110)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (37)
T 2elp_A 10 MKCPY--CDFYFM 20 (37)
T ss_dssp EECSS--SSCEEC
T ss_pred eECCC--CChhhc
Confidence 66766 766553
No 199
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44 E-value=39 Score=18.08 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=8.2
Q ss_pred CcccCCCCCC
Q 033869 67 TEVTCPACKH 76 (110)
Q Consensus 67 ~~~~CpkCg~ 76 (110)
....||+|+.
T Consensus 11 ~~~~CPrCn~ 20 (49)
T 2e72_A 11 GRKICPRCNA 20 (49)
T ss_dssp SCCCCTTTCC
T ss_pred CceeCCcccc
Confidence 4678999985
No 200
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.14 E-value=36 Score=20.18 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=3.7
Q ss_pred eEEcCCCC
Q 033869 23 RFSCPACP 30 (110)
Q Consensus 23 ~~~C~~C~ 30 (110)
...|+.|.
T Consensus 52 iv~C~sCS 59 (83)
T 1wge_A 52 VATCPSCS 59 (83)
T ss_dssp EEECTTTC
T ss_pred EEECCCCc
Confidence 44444444
Done!