Query 033870
Match_columns 110
No_of_seqs 104 out of 262
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01147 V_ATP_synt_G vacuola 100.0 5.1E-43 1.1E-47 246.1 15.8 108 1-110 1-108 (113)
2 KOG1772 Vacuolar H+-ATPase V1 100.0 5.3E-43 1.2E-47 242.6 15.1 108 1-110 1-108 (108)
3 PF03179 V-ATPase_G: Vacuolar 100.0 1.4E-31 3E-36 183.5 11.1 103 7-109 3-105 (105)
4 COG2811 NtpF Archaeal/vacuolar 98.2 9.4E-05 2E-09 51.9 12.7 100 7-108 6-105 (108)
5 PRK08404 V-type ATP synthase s 97.9 0.0014 3.1E-08 45.1 13.5 98 9-106 4-101 (103)
6 PRK01005 V-type ATP synthase s 97.7 0.002 4.4E-08 49.4 12.8 82 1-82 1-91 (207)
7 TIGR02926 AhaH ATP synthase ar 96.7 0.069 1.5E-06 35.1 10.6 51 11-61 2-52 (85)
8 PRK09173 F0F1 ATP synthase sub 96.6 0.099 2.1E-06 37.7 12.1 53 11-63 61-113 (159)
9 PRK14471 F0F1 ATP synthase sub 96.4 0.14 3E-06 37.1 11.9 47 12-58 68-114 (164)
10 PRK14475 F0F1 ATP synthase sub 96.4 0.17 3.7E-06 37.0 12.2 55 12-66 70-124 (167)
11 CHL00019 atpF ATP synthase CF0 96.4 0.17 3.6E-06 37.5 12.2 40 12-51 84-123 (184)
12 PRK07352 F0F1 ATP synthase sub 96.2 0.25 5.3E-06 36.2 12.2 51 11-61 78-128 (174)
13 TIGR01144 ATP_synt_b ATP synth 96.2 0.26 5.7E-06 34.8 12.0 46 11-56 54-99 (147)
14 PF01991 vATP-synt_E: ATP synt 96.1 0.14 2.9E-06 37.3 10.3 48 15-62 5-52 (198)
15 PF06188 HrpE: HrpE/YscL/FliH 96.0 0.48 1E-05 35.7 13.9 50 12-61 24-73 (191)
16 PRK14472 F0F1 ATP synthase sub 96.0 0.36 7.8E-06 35.4 12.1 50 11-60 77-126 (175)
17 TIGR03825 FliH_bacil flagellar 95.9 0.33 7.2E-06 37.7 12.5 40 13-52 46-88 (255)
18 PRK01558 V-type ATP synthase s 95.9 0.46 1E-05 35.8 12.9 40 15-54 19-58 (198)
19 PRK13461 F0F1 ATP synthase sub 95.9 0.42 9.1E-06 34.4 12.1 46 11-56 64-109 (159)
20 PRK13453 F0F1 ATP synthase sub 95.9 0.43 9.3E-06 35.1 12.2 52 11-62 77-132 (173)
21 PF12072 DUF3552: Domain of un 95.8 0.11 2.4E-06 39.2 8.9 56 9-64 25-80 (201)
22 PRK01194 V-type ATP synthase s 95.7 0.23 4.9E-06 37.2 10.3 91 15-106 13-115 (185)
23 PRK13460 F0F1 ATP synthase sub 95.7 0.52 1.1E-05 34.5 12.0 47 12-58 76-122 (173)
24 PRK00106 hypothetical protein; 95.7 0.27 5.8E-06 42.8 12.0 52 10-61 34-85 (535)
25 PRK03963 V-type ATP synthase s 95.7 0.52 1.1E-05 34.8 12.1 88 15-104 14-113 (198)
26 PRK02292 V-type ATP synthase s 95.7 0.22 4.8E-06 36.7 10.1 50 15-64 13-62 (188)
27 PRK13454 F0F1 ATP synthase sub 95.5 0.27 5.8E-06 36.6 10.0 19 83-101 144-162 (181)
28 PRK06231 F0F1 ATP synthase sub 95.3 0.71 1.5E-05 35.1 12.0 55 11-65 107-165 (205)
29 PRK13455 F0F1 ATP synthase sub 95.2 0.78 1.7E-05 33.9 11.7 20 12-31 87-106 (184)
30 PRK14473 F0F1 ATP synthase sub 95.2 0.82 1.8E-05 33.0 12.4 49 12-60 68-120 (164)
31 CHL00118 atpG ATP synthase CF0 95.1 0.47 1E-05 34.3 9.9 25 73-97 125-149 (156)
32 PRK01005 V-type ATP synthase s 95.0 1.2 2.6E-05 34.1 13.5 41 11-51 31-71 (207)
33 PRK13428 F0F1 ATP synthase sub 95.0 0.75 1.6E-05 38.8 12.2 49 12-60 61-109 (445)
34 PF00430 ATP-synt_B: ATP synth 94.8 0.68 1.5E-05 31.6 9.8 44 18-61 54-97 (132)
35 TIGR03321 alt_F1F0_F0_B altern 94.6 1.3 2.9E-05 34.2 12.1 53 11-63 64-120 (246)
36 PRK14474 F0F1 ATP synthase sub 94.5 1.5 3.3E-05 34.2 12.1 58 9-66 62-123 (250)
37 PRK06568 F0F1 ATP synthase sub 94.1 0.99 2.1E-05 33.3 9.7 38 21-58 62-99 (154)
38 PRK09174 F0F1 ATP synthase sub 94.0 2.1 4.6E-05 32.6 13.7 36 69-104 152-187 (204)
39 TIGR02926 AhaH ATP synthase ar 93.7 1.2 2.6E-05 29.2 8.7 50 9-58 11-60 (85)
40 PRK06669 fliH flagellar assemb 93.7 2.8 6E-05 32.9 12.6 39 8-46 78-116 (281)
41 PRK12704 phosphodiesterase; Pr 93.3 4.2 9E-05 35.2 13.5 51 12-62 32-82 (520)
42 COG0711 AtpF F0F1-type ATP syn 93.1 2.5 5.4E-05 30.9 14.1 50 14-63 57-106 (161)
43 PRK03963 V-type ATP synthase s 93.1 2.6 5.7E-05 31.1 13.0 47 17-63 5-51 (198)
44 CHL00118 atpG ATP synthase CF0 92.7 2.8 6E-05 30.2 13.5 28 34-61 82-109 (156)
45 PRK05759 F0F1 ATP synthase sub 92.6 2.6 5.7E-05 29.8 11.9 80 18-104 59-138 (156)
46 PRK08476 F0F1 ATP synthase sub 92.6 2.8 6E-05 29.9 13.7 92 8-99 41-136 (141)
47 PRK09174 F0F1 ATP synthase sub 92.5 3.8 8.2E-05 31.2 13.9 34 25-58 104-137 (204)
48 TIGR03319 YmdA_YtgF conserved 92.3 6.6 0.00014 33.9 13.5 52 12-63 26-77 (514)
49 COG0711 AtpF F0F1-type ATP syn 92.1 3.6 7.7E-05 30.0 12.8 50 11-60 65-114 (161)
50 PRK05759 F0F1 ATP synthase sub 91.8 3.4 7.3E-05 29.3 14.3 48 11-58 63-114 (156)
51 PF00430 ATP-synt_B: ATP synth 91.8 2.9 6.2E-05 28.4 10.2 57 7-63 32-88 (132)
52 PRK09098 type III secretion sy 91.4 5.6 0.00012 30.9 12.1 43 19-61 40-82 (233)
53 PRK07353 F0F1 ATP synthase sub 91.0 4 8.6E-05 28.5 13.5 76 19-101 61-136 (140)
54 PRK08475 F0F1 ATP synthase sub 90.4 5.5 0.00012 29.2 12.1 26 35-60 83-108 (167)
55 PRK13428 F0F1 ATP synthase sub 90.2 10 0.00022 32.0 14.1 43 19-61 57-99 (445)
56 PRK08404 V-type ATP synthase s 90.2 4.4 9.6E-05 27.7 10.3 51 11-61 17-71 (103)
57 PRK00106 hypothetical protein; 90.1 11 0.00023 33.1 12.6 47 13-59 48-94 (535)
58 PRK06568 F0F1 ATP synthase sub 90.1 6 0.00013 29.1 14.2 47 12-58 64-110 (154)
59 PRK14473 F0F1 ATP synthase sub 89.8 5.8 0.00013 28.6 14.3 78 24-101 58-139 (164)
60 PRK02292 V-type ATP synthase s 89.5 6.7 0.00015 28.7 11.5 77 13-89 22-99 (188)
61 PRK01558 V-type ATP synthase s 88.9 8.2 0.00018 29.0 11.5 31 13-43 28-58 (198)
62 PRK13454 F0F1 ATP synthase sub 88.6 8.2 0.00018 28.6 13.7 51 13-63 92-142 (181)
63 PRK13460 F0F1 ATP synthase sub 88.5 7.8 0.00017 28.3 14.3 78 19-103 72-149 (173)
64 PRK08476 F0F1 ATP synthase sub 88.4 7.3 0.00016 27.7 13.5 29 15-43 59-87 (141)
65 CHL00019 atpF ATP synthase CF0 88.2 8.5 0.00018 28.4 14.3 42 18-59 79-120 (184)
66 PRK13455 F0F1 ATP synthase sub 87.7 9.2 0.0002 28.1 14.2 64 22-92 86-149 (184)
67 PRK14471 F0F1 ATP synthase sub 87.5 8.7 0.00019 27.6 13.6 36 24-59 58-93 (164)
68 TIGR01144 ATP_synt_b ATP synth 85.9 9.8 0.00021 26.6 14.3 72 33-104 54-129 (147)
69 PRK14475 F0F1 ATP synthase sub 84.7 13 0.00028 27.0 14.3 66 20-92 67-132 (167)
70 PRK09173 F0F1 ATP synthase sub 84.5 12 0.00027 26.7 13.5 70 34-103 62-135 (159)
71 PRK15354 type III secretion sy 84.2 18 0.0004 28.4 10.8 63 13-75 47-109 (224)
72 PRK13453 F0F1 ATP synthase sub 83.8 15 0.00032 26.9 14.3 73 32-104 76-152 (173)
73 TIGR03319 YmdA_YtgF conserved 83.7 27 0.00058 30.2 11.5 50 16-65 19-68 (514)
74 PRK10930 FtsH protease regulat 83.5 19 0.0004 30.5 10.2 34 13-46 265-298 (419)
75 PRK14472 F0F1 ATP synthase sub 83.4 15 0.00033 26.8 14.3 76 20-102 75-150 (175)
76 PRK06569 F0F1 ATP synthase sub 83.3 16 0.00035 27.0 13.4 71 20-108 67-137 (155)
77 TIGR03825 FliH_bacil flagellar 82.8 20 0.00044 27.8 11.8 52 12-63 34-92 (255)
78 PRK07353 F0F1 ATP synthase sub 81.9 15 0.00032 25.5 13.7 39 27-65 58-96 (140)
79 PF01991 vATP-synt_E: ATP synt 81.2 18 0.00039 26.1 12.4 37 15-51 16-52 (198)
80 PRK07352 F0F1 ATP synthase sub 81.2 18 0.0004 26.3 14.3 38 21-58 77-114 (174)
81 TIGR02499 HrpE_YscL_not type I 80.5 17 0.00038 25.5 10.4 27 19-45 14-40 (166)
82 COG1390 NtpE Archaeal/vacuolar 79.8 24 0.00053 26.7 11.0 49 15-63 14-62 (194)
83 PRK06669 fliH flagellar assemb 79.3 28 0.00061 27.2 12.8 50 12-61 71-120 (281)
84 TIGR03321 alt_F1F0_F0_B altern 79.1 27 0.00059 26.9 14.3 41 19-59 61-101 (246)
85 PRK14474 F0F1 ATP synthase sub 79.1 28 0.00062 27.1 14.2 43 19-61 61-103 (250)
86 PRK12705 hypothetical protein; 76.9 50 0.0011 28.8 12.6 46 19-64 34-79 (508)
87 PRK06328 type III secretion sy 76.8 32 0.00069 26.5 10.6 30 18-47 29-58 (223)
88 PRK13461 F0F1 ATP synthase sub 76.4 25 0.00054 25.1 13.4 37 27-63 58-94 (159)
89 PRK06937 type III secretion sy 76.0 30 0.00065 25.8 9.2 22 19-40 31-52 (204)
90 TIGR01933 hflK HflK protein. H 75.9 32 0.00069 26.3 8.7 45 9-53 154-198 (261)
91 PF03179 V-ATPase_G: Vacuolar 75.9 21 0.00045 23.9 8.6 49 15-63 22-70 (105)
92 PRK10930 FtsH protease regulat 73.9 11 0.00025 31.8 6.2 37 10-46 251-287 (419)
93 KOG0163 Myosin class VI heavy 73.4 71 0.0015 30.1 11.2 86 9-99 928-1013(1259)
94 PRK08475 F0F1 ATP synthase sub 72.5 35 0.00075 24.9 13.8 47 15-61 74-120 (167)
95 cd03404 Band_7_HflK Band_7_Hfl 70.6 45 0.00098 25.4 11.8 49 9-57 181-229 (266)
96 PRK06231 F0F1 ATP synthase sub 70.1 45 0.00098 25.2 13.6 30 33-62 107-136 (205)
97 TIGR01933 hflK HflK protein. H 69.6 29 0.00062 26.5 7.1 38 11-48 167-204 (261)
98 PRK06569 F0F1 ATP synthase sub 68.7 45 0.00097 24.7 11.4 48 42-89 56-103 (155)
99 cd03404 Band_7_HflK Band_7_Hfl 67.0 54 0.0012 25.0 10.6 30 15-44 198-227 (266)
100 cd03407 Band_7_4 A subgroup of 64.5 40 0.00087 26.0 7.1 42 9-50 148-189 (262)
101 PRK09098 type III secretion sy 63.7 67 0.0015 24.9 11.1 33 12-44 44-76 (233)
102 COG2811 NtpF Archaeal/vacuolar 62.8 51 0.0011 23.2 11.2 56 11-66 21-76 (108)
103 PF06188 HrpE: HrpE/YscL/FliH 62.6 63 0.0014 24.2 10.7 36 12-47 35-70 (191)
104 COG1390 NtpE Archaeal/vacuolar 61.7 68 0.0015 24.3 11.4 46 14-59 2-47 (194)
105 PRK12704 phosphodiesterase; Pr 60.1 1.2E+02 0.0025 26.4 11.1 48 18-65 27-74 (520)
106 PF14942 Muted: Organelle biog 59.0 65 0.0014 23.4 6.9 19 73-91 121-139 (145)
107 TIGR02499 HrpE_YscL_not type I 57.2 65 0.0014 22.6 8.4 21 13-33 19-39 (166)
108 PF01468 GA: GA module; Inter 53.1 36 0.00077 20.8 4.1 27 24-50 1-29 (60)
109 PRK06397 V-type ATP synthase s 44.2 1.1E+02 0.0024 21.4 8.4 42 20-61 22-63 (111)
110 PF05103 DivIVA: DivIVA protei 41.6 8.7 0.00019 26.2 0.0 36 12-47 68-103 (131)
111 PRK01194 V-type ATP synthase s 37.2 1.7E+02 0.0037 21.7 11.3 49 17-65 4-52 (185)
112 TIGR01932 hflC HflC protein. H 35.7 2.3E+02 0.0049 22.6 10.1 68 15-91 231-298 (317)
113 cd03405 Band_7_HflC Band_7_Hfl 33.8 2E+02 0.0043 21.4 7.1 14 35-48 194-207 (242)
114 PF12750 Maff2: Maff2 family; 30.6 24 0.00051 22.9 0.7 10 6-15 42-51 (70)
115 PRK15322 invasion protein OrgB 29.5 2.8E+02 0.006 21.7 11.3 31 14-44 8-38 (210)
116 cd03407 Band_7_4 A subgroup of 28.8 1.6E+02 0.0035 22.6 5.3 35 10-44 160-194 (262)
117 cd03401 Band_7_prohibitin Band 28.4 1.7E+02 0.0036 21.0 5.0 14 35-48 175-188 (196)
118 PF01086 Clathrin_lg_ch: Clath 27.2 1.5E+02 0.0033 22.7 4.8 32 35-66 136-167 (225)
119 PRK11677 hypothetical protein; 26.8 2.5E+02 0.0053 20.2 7.2 29 30-58 29-57 (134)
120 PRK15322 invasion protein OrgB 26.3 3.2E+02 0.0069 21.4 6.8 19 15-33 20-38 (210)
121 PF06635 NolV: Nodulation prot 26.3 3.1E+02 0.0068 21.3 9.5 23 8-30 31-53 (207)
122 PRK00409 recombination and DNA 26.1 5.1E+02 0.011 23.7 12.1 35 28-62 561-595 (782)
123 PF01988 VIT1: VIT family; In 25.8 2.4E+02 0.0051 21.1 5.6 24 84-108 100-123 (213)
124 PF11629 Mst1_SARAH: C termina 24.5 1.7E+02 0.0038 17.7 4.9 29 73-101 18-46 (49)
125 PRK10428 hypothetical protein; 24.5 2E+02 0.0043 18.3 4.6 36 13-52 29-64 (69)
126 PRK00409 recombination and DNA 23.4 5.7E+02 0.012 23.3 8.6 30 21-50 565-594 (782)
127 PF12128 DUF3584: Protein of u 22.2 7E+02 0.015 23.9 13.2 46 10-55 658-703 (1201)
128 PRK00247 putative inner membra 20.5 3.5E+02 0.0076 23.2 6.1 33 16-48 331-363 (429)
129 PF06305 DUF1049: Protein of u 20.3 1.2E+02 0.0026 18.2 2.5 21 29-49 47-67 (68)
130 TIGR01932 hflC HflC protein. H 20.2 1.9E+02 0.0042 23.0 4.3 39 9-47 212-252 (317)
131 PF00938 Lipoprotein_3: Lipopr 20.1 1.2E+02 0.0026 20.5 2.6 26 79-104 28-53 (87)
132 cd03403 Band_7_stomatin_like B 20.1 3.5E+02 0.0076 19.6 8.2 38 9-46 149-186 (215)
No 1
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=100.00 E-value=5.1e-43 Score=246.08 Aligned_cols=108 Identities=40% Similarity=0.522 Sum_probs=106.9
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 033870 1 MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETE 80 (110)
Q Consensus 1 Mas~~~s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~ 80 (110)
|+|| ++|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++.+..+++++|+
T Consensus 1 M~sq--~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~ 78 (113)
T TIGR01147 1 MASQ--TQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ 78 (113)
T ss_pred CCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 8998 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 033870 81 VKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110 (110)
Q Consensus 81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
.+|+.|+.+|++|++.||++||++||+|+|
T Consensus 79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~p 108 (113)
T TIGR01147 79 AKIREIKKAVQKNKDAVIKDLLHLVCDISP 108 (113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998
No 2
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=100.00 E-value=5.3e-43 Score=242.60 Aligned_cols=108 Identities=56% Similarity=0.661 Sum_probs=107.3
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 033870 1 MASNRGHGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETE 80 (110)
Q Consensus 1 Mas~~~s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~ 80 (110)
|+|+ ++||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.++.+++.+|+
T Consensus 1 M~Sq--~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~ 78 (108)
T KOG1772|consen 1 MASQ--SQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD 78 (108)
T ss_pred Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 9998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 033870 81 VKIHHLNAGAEKIQYDVVQMLLKHVTTVKN 110 (110)
Q Consensus 81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
.+|..|+.++++|++.||++||.+||||+|
T Consensus 79 ~ki~~lk~~~~k~~~~Vv~~LL~~V~~v~~ 108 (108)
T KOG1772|consen 79 DKIAGLKTSAQKNSDDVVDMLLKYVCDVKP 108 (108)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999998
No 3
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=99.97 E-value=1.4e-31 Score=183.50 Aligned_cols=103 Identities=51% Similarity=0.677 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870 7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL 86 (110)
Q Consensus 7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i 86 (110)
|+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...+.|+.+.....|..+|..+|..|
T Consensus 3 ~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i 82 (105)
T PF03179_consen 3 SDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEI 82 (105)
T ss_dssp ---SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhcccC
Q 033870 87 NAGAEKIQYDVVQMLLKHVTTVK 109 (110)
Q Consensus 87 ~~~~~~nk~~Vv~~Ll~~V~~V~ 109 (110)
+..|++|++.||++||+.||||+
T Consensus 83 ~~~~~~~~~~vv~~ll~~V~~Vk 105 (105)
T PF03179_consen 83 KKSASKNKDKVVDMLLSRVCDVK 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhHHHHHHHHHHHHcCCC
Confidence 99999999999999999999996
No 4
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=98.20 E-value=9.4e-05 Score=51.92 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870 7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL 86 (110)
Q Consensus 7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i 86 (110)
+.-|-.+-.||-.|.+.|.+|+..+.++++.|+.+|...|+.+-..-+..++++....-.........+-.++..++..|
T Consensus 6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~ 85 (108)
T COG2811 6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAI 85 (108)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999998887776666777778888888888888
Q ss_pred HHHHHHhHHHHHHHHHHhhccc
Q 033870 87 NAGAEKIQYDVVQMLLKHVTTV 108 (110)
Q Consensus 87 ~~~~~~nk~~Vv~~Ll~~V~~V 108 (110)
... -|.++|+.++++-+..+
T Consensus 86 ~~k--a~~~k~~~~a~~~~~~~ 105 (108)
T COG2811 86 LSK--AAEGKVVEAALSEFLAI 105 (108)
T ss_pred HHH--hHhhHHHHHHHHHHHHH
Confidence 776 68888999888877654
No 5
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=97.88 E-value=0.0014 Score=45.14 Aligned_cols=98 Identities=26% Similarity=0.313 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNA 88 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~ 88 (110)
-|...=.||.++..++..|+......|..|+.+|..+.+....+-..+..................+-.+...++..|..
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~ 83 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV 83 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999998899999999999888888888777777776666555556666677778888999999
Q ss_pred HHHHhHHHHHHHHHHhhc
Q 033870 89 GAEKIQYDVVQMLLKHVT 106 (110)
Q Consensus 89 ~~~~nk~~Vv~~Ll~~V~ 106 (110)
....+.+.+|++++..+.
T Consensus 84 ~a~~k~~~av~~~~~~~~ 101 (103)
T PRK08404 84 KAEENFETAVSEAIKLIR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998764
No 6
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.67 E-value=0.002 Score=49.40 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=65.0
Q ss_pred CCCcccchhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Q 033870 1 MASNRGHGGIQQLL---------AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGAN 71 (110)
Q Consensus 1 Mas~~~s~gIQqLL---------~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~ 71 (110)
|++-++..-||+|+ .|+.+|..|+.+|++...+.+.+|+.+|..-++.++.+-+.+.+...+...-.....
T Consensus 1 ~~~~~~~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~ 80 (207)
T PRK01005 1 MADLSAQDKLKQICDALREETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRS 80 (207)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445566554 688999999999999999999999999999999999999999998887766665666
Q ss_pred HHHHHHHHHHH
Q 033870 72 VKRLEQETEVK 82 (110)
Q Consensus 72 ~~~l~~et~~~ 82 (110)
.-.+.++....
T Consensus 81 ~l~aKqevi~~ 91 (207)
T PRK01005 81 LESLKQAVENK 91 (207)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 7
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=96.67 E-value=0.069 Score=35.12 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
-+|=.||.++..+|.+|+......|.+|+..|...++.-...-+.+-....
T Consensus 2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii 52 (85)
T TIGR02926 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEII 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999998888877777766555
No 8
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=96.62 E-value=0.099 Score=37.70 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
.+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....-+.+.......
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~ 113 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETD 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888766655555544433
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=96.43 E-value=0.14 Score=37.11 Aligned_cols=47 Identities=30% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
.|-.|..+|+.|+..|+........++..+|..|++....+-..+..
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~ 114 (164)
T PRK14471 68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIE 114 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777765555555544444444444444444443
No 10
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=96.38 E-value=0.17 Score=36.99 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG 66 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g 66 (110)
+|-.|..+|.+|+.+|+..-.+...++...|..|.+.....-+.+-.........
T Consensus 70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~ 124 (167)
T PRK14475 70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAA 124 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776666666666666666666665555555544444433
No 11
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.38 E-value=0.17 Score=37.54 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA 51 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~ 51 (110)
+|-.|..+|..|+..|+..-.+.......+|+.|++....
T Consensus 84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~ 123 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLEN 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777766665444433333333333333333
No 12
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=96.20 E-value=0.25 Score=36.25 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
.+|-.|.++|+.|+.+|+..-.+....+..+|..+++..+.+-..+.....
T Consensus 78 ~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 128 (174)
T PRK07352 78 QKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ 128 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877777666777777777766666666655444
No 13
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=96.18 E-value=0.26 Score=34.78 Aligned_cols=46 Identities=35% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE 56 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~e 56 (110)
..|-.|..+|..|+.+|+..-.+...++..+|..+++....+-..+
T Consensus 54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~ 99 (147)
T TIGR01144 54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAE 99 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777766666554444444444444444444333333
No 14
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=96.08 E-value=0.14 Score=37.34 Aligned_cols=48 Identities=33% Similarity=0.448 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
+|+.+|.+|+++|+..-.+-+.+++.+|...++.+....+.+......
T Consensus 5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (198)
T PF01991_consen 5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998887777777765443
No 15
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=95.97 E-value=0.48 Score=35.72 Aligned_cols=50 Identities=36% Similarity=0.431 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
..|.+...|.+|+++||..-.+-|.+|+.+|+.-++.-+.+-.+.|...-
T Consensus 24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a 73 (191)
T PF06188_consen 24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999976666677776433
No 16
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=95.95 E-value=0.36 Score=35.42 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~ 60 (110)
.+|-.|+.+|..|+..|+..-.+-..++..+|..|++....+-..+....
T Consensus 77 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 77 ELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888777776555544444444444444444444444433
No 17
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=95.94 E-value=0.33 Score=37.72 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQA---KEEAEREIAEHRAQ 52 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqA---K~eA~~EIe~yr~~ 52 (110)
|=.|..+|+.||.+|+..-...+.++ ..+|..|.+..+..
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~ 88 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887755554444 34444444444433
No 18
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=95.94 E-value=0.46 Score=35.81 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVE 54 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE 54 (110)
+|+.+|..|+++|++.-.+-+.+|+.+|+.-++..+.+-+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999988877555555
No 19
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=95.88 E-value=0.42 Score=34.40 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVERE 56 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~e 56 (110)
++|-.|..+|..|+.+|+..-.+.......+|..|++....+-..+
T Consensus 64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~ 109 (159)
T PRK13461 64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLE 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766544443333334444444333333333
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=95.86 E-value=0.43 Score=35.10 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAK----MARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r----~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
++|-.|+.+|..|+.+|+..- ...+.+|+.+|..-++.-+.+=+.+.+....
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888777754 3344555555555555545444444444443
No 21
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=95.76 E-value=0.11 Score=39.18 Aligned_cols=56 Identities=30% Similarity=0.376 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES 64 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~ 64 (110)
+=..|..|+..|..|+.+|+..=....+++..+|..++..+|.+-|.+|+......
T Consensus 25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999998888999999999999999999999998777664
No 22
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=95.68 E-value=0.23 Score=37.20 Aligned_cols=91 Identities=7% Similarity=0.007 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD------------SGANVKRLEQETEVK 82 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~------------~~~~~~~l~~et~~~ 82 (110)
.|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........++ ....-..+=..+..+
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~ 92 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH 92 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999888887777666554422 122333333344445
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc
Q 033870 83 IHHLNAGAEKIQYDVVQMLLKHVT 106 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~Ll~~V~ 106 (110)
|..|-..- .+++-+.++|+..++
T Consensus 93 L~~l~~~~-~Y~~~L~~LI~~a~~ 115 (185)
T PRK01194 93 LMNITKSK-EYDSILNKMIEVAIK 115 (185)
T ss_pred HHcccCCc-hHHHHHHHHHHHHHH
Confidence 55544211 455555555555444
No 23
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=95.68 E-value=0.52 Score=34.54 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
+|-.|..+|..|+..|+..-.+...+...+|..|++....+-..+..
T Consensus 76 ~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie 122 (173)
T PRK13460 76 RLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666654444444444444444444444333333
No 24
>PRK00106 hypothetical protein; Provisional
Probab=95.68 E-value=0.27 Score=42.76 Aligned_cols=52 Identities=25% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 10 IQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
=-+||.|++.|.+|+.+|+..-...+++|..+|+.++..++.+-++++....
T Consensus 34 ~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R 85 (535)
T PRK00106 34 ELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYR 85 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999998888866555666666665555555555555544433
No 25
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=95.67 E-value=0.52 Score=34.84 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------hcCCchhHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK----LAE--------SSGDSGANVKRLEQETEVK 82 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~----~~~--------~~g~~~~~~~~l~~et~~~ 82 (110)
.|..+|..|+++|+..-.+.+.+|..+|+.+.+.+...-+.+-... .+. .+.-.......+=.++..+
T Consensus 14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~ 93 (198)
T PRK03963 14 EAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRER 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999888888888888876665544333332211 111 1122233444444555566
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 033870 83 IHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
|..+... .+++-+.++|...
T Consensus 94 l~~~~~~--~Y~~~l~~li~~a 113 (198)
T PRK03963 94 LAELPED--EYFETLKALTKEA 113 (198)
T ss_pred HHhhhhh--hHHHHHHHHHHHH
Confidence 6665543 4555555555544
No 26
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=95.66 E-value=0.22 Score=36.67 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES 64 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~ 64 (110)
.|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+........
T Consensus 13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~ 62 (188)
T PRK02292 13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999888888888776543
No 27
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=95.51 E-value=0.27 Score=36.61 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 033870 83 IHHLNAGAEKIQYDVVQML 101 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~L 101 (110)
+..+......--..++..|
T Consensus 144 ~~~l~~~a~~lA~~i~~kL 162 (181)
T PRK13454 144 LESVEEVAKDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334443333333343333
No 28
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=95.31 E-value=0.71 Score=35.10 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870 11 QQLLAAEQEAQHIVAAARNAKM----ARLRQAKEEAEREIAEHRAQVEREFQRKLAESS 65 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~----krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~ 65 (110)
..|-.|..+|..|+..|+..-. ..+.+|+.+|...++..+.+-+.+-.....+..
T Consensus 107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk 165 (205)
T PRK06231 107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQ 165 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877543 445566666666666666655555555544333
No 29
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=95.23 E-value=0.78 Score=33.87 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAK 31 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r 31 (110)
+|-.|..+|+.|+.+|+..-
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~a 106 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDEA 106 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544443
No 30
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=95.16 E-value=0.82 Score=33.05 Aligned_cols=49 Identities=45% Similarity=0.477 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRK 60 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~ 60 (110)
.|-.|..+|..|+.+|+.. +...+.+|+.+|...++..+.+=+.+-...
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a 120 (164)
T PRK14473 68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM 120 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666653 333444455555444444444444444333
No 31
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=95.07 E-value=0.47 Score=34.28 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 033870 73 KRLEQETEVKIHHLNAGAEKIQYDV 97 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~~nk~~V 97 (110)
.+++.+...-+..++..+..-...+
T Consensus 125 ~~i~~ek~~a~~~l~~~v~~lA~~i 149 (156)
T CHL00118 125 KQLEAQKEKALKSLEEQVDTLSDQI 149 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 32
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=94.99 E-value=1.2 Score=34.13 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA 51 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~ 51 (110)
.-|-.|.++|..|+.+|+....+.+.+|+.+++.|......
T Consensus 31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999988888774443
No 33
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=94.96 E-value=0.75 Score=38.80 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~ 60 (110)
.|-.|..+|++|+.+|+..-.+...++..+|..|++....+-..+....
T Consensus 61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~e 109 (445)
T PRK13428 61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLL 109 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777776555555555555555555554444444433
No 34
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=94.81 E-value=0.68 Score=31.59 Aligned_cols=44 Identities=36% Similarity=0.422 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
.++..++.+||.....-+.+|+.+|..+++....+-+++.....
T Consensus 54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~ 97 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERII 97 (132)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555666665555555555444444333
No 35
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=94.64 E-value=1.3 Score=34.16 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
++|-.|+.+|..|+.+|+.. +...+.+|+.+|...++..+..-+.+......+
T Consensus 64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~ 120 (246)
T TIGR03321 64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999977664 556677888888887777777777666655544
No 36
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=94.45 E-value=1.5 Score=34.23 Aligned_cols=58 Identities=26% Similarity=0.226 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870 9 GIQQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG 66 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g 66 (110)
.-++|-.|++++..|+..|+.. +..-+.+|+.+|...++..+..-+.+-+........
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~ 123 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQ 123 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999888874 555577777777777777777666666665555443
No 37
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=94.08 E-value=0.99 Score=33.27 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 21 QHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 21 ~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
.....+||......+.+|+..|...++.-+.+-..+-.
T Consensus 62 e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~ 99 (154)
T PRK06568 62 NAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLE 99 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433333
No 38
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=93.97 E-value=2.1 Score=32.60 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870 69 GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 69 ~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
.....+++.+...-+..+......--..++..||..
T Consensus 152 ~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~ 187 (204)
T PRK09174 152 KEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGG 187 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344556666666666666666666666666666643
No 39
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=93.67 E-value=1.2 Score=29.17 Aligned_cols=50 Identities=28% Similarity=0.293 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
.=..|-.|..+|..||..|+....+-..++..+|..+.......-..+..
T Consensus 11 ~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~ 60 (85)
T TIGR02926 11 AEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999998887777777777777666665555444444
No 40
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=93.66 E-value=2.8 Score=32.90 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 8 GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI 46 (110)
Q Consensus 8 ~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI 46 (110)
.-+..|++|..+|..|+.+||..-.+.+.+|..+++...
T Consensus 78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~ 116 (281)
T PRK06669 78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLI 116 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555555555554433
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=93.25 E-value=4.2 Score=35.17 Aligned_cols=51 Identities=29% Similarity=0.400 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
.+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus 32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~ 82 (520)
T PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999998766778999999999999999998888755443
No 42
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=93.14 E-value=2.5 Score=30.85 Aligned_cols=50 Identities=30% Similarity=0.295 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 14 LAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
..+-.++...+.+||.....-+.+|+.+|...++..+.+-+.++......
T Consensus 57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~ 106 (161)
T COG0711 57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA 106 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556677777777777777778888888888887777777766543
No 43
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=93.11 E-value=2.6 Score=31.05 Aligned_cols=47 Identities=28% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 17 EQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
+.-..+|..+|+....+.|.+|+.+|+..++....+-+.+.......
T Consensus 5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~ 51 (198)
T PRK03963 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK 51 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999999888888777666544
No 44
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=92.69 E-value=2.8 Score=30.21 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 34 RLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 34 rLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
+|.+|+.+|..-++.-+.+-+.......
T Consensus 82 ~L~~A~~ea~~ii~~A~~~a~~~~~~~~ 109 (156)
T CHL00118 82 ELSKARKEAQLEITQSQKEAKEIVENEL 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555444444333
No 45
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=92.65 E-value=2.6 Score=29.83 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 033870 18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDV 97 (110)
Q Consensus 18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V 97 (110)
.++..++.+|+......+.+|+.+|..+.+....+-..+-..... .....+..+...-+..++..+..--..+
T Consensus 59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666665555555554442 2334555555555555555555555555
Q ss_pred HHHHHHh
Q 033870 98 VQMLLKH 104 (110)
Q Consensus 98 v~~Ll~~ 104 (110)
+..+|..
T Consensus 132 a~k~l~~ 138 (156)
T PRK05759 132 AEKILGR 138 (156)
T ss_pred HHHHHHh
Confidence 5554443
No 46
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=92.60 E-value=2.8 Score=29.93 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHH
Q 033870 8 GGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD----SGANVKRLEQETEVKI 83 (110)
Q Consensus 8 ~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~----~~~~~~~l~~et~~~i 83 (110)
+.|..-|..=.++..-+...+..-...|.+|+.+|...++..+.+-..+........... .......++.+...-.
T Consensus 41 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~ 120 (141)
T PRK08476 41 ASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELK 120 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544445555555666666667777777777777777666666655444333221 1223334444444444
Q ss_pred HHHHHHHHHhHHHHHH
Q 033870 84 HHLNAGAEKIQYDVVQ 99 (110)
Q Consensus 84 ~~i~~~~~~nk~~Vv~ 99 (110)
..++..+..-.+.++.
T Consensus 121 ~~l~~qv~~~~~~~~~ 136 (141)
T PRK08476 121 EQLLSQMPEFKEALNA 136 (141)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444443
No 47
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=92.48 E-value=3.8 Score=31.23 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 25 AAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 25 ~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
......-.+.|.+|+.+|..-|+..|.+-+.+..
T Consensus 104 e~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e 137 (204)
T PRK09174 104 DAAVAAYEQELAQARAKAHSIAQAAREAAKAKAE 137 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555555555555555544444443
No 48
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.31 E-value=6.6 Score=33.90 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
.|-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus 26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r 77 (514)
T TIGR03319 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888877666678888899999999998888887555443
No 49
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=92.08 E-value=3.6 Score=30.04 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRK 60 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~ 60 (110)
+.|-.|..+|+.||+.|+..-..-...++.+|+.|.+.....-+.+...-
T Consensus 65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e 114 (161)
T COG0711 65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE 114 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887666666666666666655555544444433
No 50
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=91.85 E-value=3.4 Score=29.28 Aligned_cols=48 Identities=31% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNA----KMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~----r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
..|-.|..+|..|+.+|+.. +...+.+|+.+|..-++..+..-+.+.+
T Consensus 63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~ 114 (156)
T PRK05759 63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK 114 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888877764 4444555555555555554444444433
No 51
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=91.84 E-value=2.9 Score=28.45 Aligned_cols=57 Identities=28% Similarity=0.313 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
++.|+..+.-=.....-+......-..+|.+|+.+|..-++..+.+-+........+
T Consensus 32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e 88 (132)
T PF00430_consen 32 KAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE 88 (132)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655554333334444455556667788999999999998888888888766544
No 52
>PRK09098 type III secretion system protein HrpB; Validated
Probab=91.36 E-value=5.6 Score=30.88 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
+..+|+++||+.=.+-|-+|+.+|..=++..+.+.|..|+.-.
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy 82 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGY 82 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777776667777777777777777766666665443
No 53
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=90.99 E-value=4 Score=28.46 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVV 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++....+.||.....-+.+|+.+|..+.+.....-..+-.... ......++.+...-+..++..+..---.++
T Consensus 61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~-------~~a~~~i~~e~~~a~~~l~~~v~~la~~~a 133 (140)
T PRK07353 61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASK-------EKARREIEQQKQAALAQLEQQVDALSRQIL 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333 222344555555555555555444444444
Q ss_pred HHH
Q 033870 99 QML 101 (110)
Q Consensus 99 ~~L 101 (110)
..|
T Consensus 134 ~kl 136 (140)
T PRK07353 134 EKL 136 (140)
T ss_pred HHh
Confidence 333
No 54
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=90.42 E-value=5.5 Score=29.16 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 35 LRQAKEEAEREIAEHRAQVEREFQRK 60 (110)
Q Consensus 35 LKqAK~eA~~EIe~yr~~kE~ef~~~ 60 (110)
|.+|+.+|..-|+..+.+-+......
T Consensus 83 L~~Ar~eA~~Ii~~A~~eAe~~~~~i 108 (167)
T PRK08475 83 LEEAKEKAELIVETAKKEAYILTQKI 108 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 55
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=90.22 E-value=10 Score=32.00 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
+...++.+|+.....-+.+|+.+|+.+.+....+-+.+.....
T Consensus 57 ~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~ 99 (445)
T PRK13428 57 AHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIK 99 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555666666666665555555555555444
No 56
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=90.16 E-value=4.4 Score=27.68 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKM----ARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~----krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
+.|-.|..+|..|+..|+..-. .-+.+|+.+|..-++..+.+-+.+-....
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~ 71 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL 71 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776533 33666666666666666665555544433
No 57
>PRK00106 hypothetical protein; Provisional
Probab=90.11 E-value=11 Score=33.06 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
|-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+.
T Consensus 48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e 94 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS 94 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999998766777999999999999999998888743
No 58
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=90.08 E-value=6 Score=29.10 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
.|-.|..+|+.|+.+|+....+-..+++.+|..|++....+-..+..
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie 110 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ 110 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777777766655444433
No 59
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=89.83 E-value=5.8 Score=28.55 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870 24 VAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS----GANVKRLEQETEVKIHHLNAGAEKIQYDVVQ 99 (110)
Q Consensus 24 V~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~----~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~ 99 (110)
.......-..+|.+|+.+|..-|+..+.+-+..+........... ......++.+...-+..++..+..---.+..
T Consensus 58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~ 137 (164)
T PRK14473 58 LANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTAS 137 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555555555555444333222111 2233444444444455554444433333333
Q ss_pred HH
Q 033870 100 ML 101 (110)
Q Consensus 100 ~L 101 (110)
.+
T Consensus 138 ki 139 (164)
T PRK14473 138 RV 139 (164)
T ss_pred HH
Confidence 33
No 60
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=89.47 E-value=6.7 Score=28.75 Aligned_cols=77 Identities=25% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ-RKLAESSGDSGANVKRLEQETEVKIHHLNAG 89 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~-~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~ 89 (110)
|=+|+++|..|+.+|++.=.+-..++..+|.++...+.......-. ......+.........+=..+..+|..+-..
T Consensus 22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~ 99 (188)
T PRK02292 22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3468899999999999887777788888888888887665444433 2223355555666677777777777776653
No 61
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=88.94 E-value=8.2 Score=29.02 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAE 43 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~ 43 (110)
|-+|+++|.+||.+|++.-.+-++.|+.+|.
T Consensus 28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888888876555555444444
No 62
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=88.60 E-value=8.2 Score=28.61 Aligned_cols=51 Identities=37% Similarity=0.363 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
|-.|..+|..|+..|+..-.+...++..+|+.|++....+-+.........
T Consensus 92 L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~ 142 (181)
T PRK13454 92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAG 142 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433333
No 63
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=88.50 E-value=7.8 Score=28.27 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVV 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++...+.+|+......+..|+.+|+.+.+....+-..+-...... ....++.+...-+..++..+..---.+.
T Consensus 72 e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~-------a~~~ie~e~~~a~~el~~ei~~lA~~~a 144 (173)
T PRK13460 72 DYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQ-------AVKEIELAKGKALSQLQNQIVEMTITIA 144 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666655555554432 3344555555555555555444444444
Q ss_pred HHHHH
Q 033870 99 QMLLK 103 (110)
Q Consensus 99 ~~Ll~ 103 (110)
..+|.
T Consensus 145 ~kil~ 149 (173)
T PRK13460 145 SKVLE 149 (173)
T ss_pred HHHHH
Confidence 44433
No 64
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=88.36 E-value=7.3 Score=27.74 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAE 43 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~ 43 (110)
....+...++..||..-......+..+|.
T Consensus 59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~ 87 (141)
T PRK08476 59 EIEHEIETILKNAREEANKIRQKAIAKAK 87 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555543333333333333
No 65
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.22 E-value=8.5 Score=28.36 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
.++..++..||......+..|+.+|+.+.+....+-..+-..
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~ 120 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLER 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555544444444443
No 66
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=87.67 E-value=9.2 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033870 22 HIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEK 92 (110)
Q Consensus 22 ~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~ 92 (110)
..+.+||......+.+|+.+|+.+.+..+.+-+.+-.... ......++.+...-+..++..+..
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~-------~~A~~~I~~ek~~a~~~l~~~i~~ 149 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL-------AAAEDQIASAEAAAVKAVRDRAVS 149 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445444444444444444433322222 223334444444444444444433
No 67
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.52 E-value=8.7 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 24 VAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 24 V~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
.......-.++|.+|+.+|..-|+..+.+.+.....
T Consensus 58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~ 93 (164)
T PRK14471 58 MQNLQADNERLLKEARAERDAILKEAREIKEKMIAD 93 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555555555555555555444443
No 68
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=85.86 E-value=9.8 Score=26.64 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870 33 ARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGD----SGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 33 krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~----~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
.+|.+|+.+|..-|+..+.+-+............. .......++.+...-+..++.....---.++..||..
T Consensus 54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~ 129 (147)
T TIGR01144 54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER 129 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555444444333322211 1233445555555555555555555555555555443
No 69
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=84.69 E-value=13 Score=27.00 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 033870 20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEK 92 (110)
Q Consensus 20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~ 92 (110)
+...++.||.....-+.+|+.+|+.+++.-+.+-+.+..... .....+++.+...-+..++..+..
T Consensus 67 ~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~A~~~I~~e~~~a~~el~~e~~~ 132 (167)
T PRK14475 67 VKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRA-------EMAERKIAQAEAQAAADVKAAAVD 132 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555554444444444333333333 233344555555555555444433
No 70
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=84.51 E-value=12 Score=26.67 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 033870 34 RLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDS----GANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLK 103 (110)
Q Consensus 34 rLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~----~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~ 103 (110)
+|..|+.+|..-|+..+.+.+.....-.....-.. .....+++.+...-+..++..+..---.++..+|.
T Consensus 62 ~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~ 135 (159)
T PRK09173 62 KRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLA 135 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555544443333222221111 22344566666666666665555444444444443
No 71
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=84.18 E-value=18 Score=28.36 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRL 75 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l 75 (110)
|=.|-..|.+||..|-.++..-|.||..+|.+=+.+-+.+.|.+.-+-.-...-..+.....|
T Consensus 47 l~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~qHV~wLve~e~lE~sL 109 (224)
T PRK15354 47 VSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQEDENQFRSL 109 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 446778899999999999999999999999999999999999998765544444444444333
No 72
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=83.83 E-value=15 Score=26.92 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870 32 MARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG----DSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 32 ~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g----~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
.++|.+|+.+|..-++..+.+-+........+... -.......++.+...-+..++..+..---.++..+|..
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~ 152 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK 152 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555544444332211 11234455566666666666655555555555544443
No 73
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.70 E-value=27 Score=30.21 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870 16 AEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS 65 (110)
Q Consensus 16 AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~ 65 (110)
+.+.|..++.+|+..-..-+++|..+|+.++..++.+-+.++.....+..
T Consensus 19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele 68 (514)
T TIGR03319 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE 68 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999988877888999999999999999999999888776665
No 74
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=83.47 E-value=19 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI 46 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI 46 (110)
..+||..|.+|+.+|+....+.+-+|...+++.|
T Consensus 265 i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i 298 (419)
T PRK10930 265 IREAEAYTNEVQPRANGQAQRILEEARAYKAQTI 298 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554544443333
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=83.40 E-value=15 Score=26.76 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870 20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQ 99 (110)
Q Consensus 20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~ 99 (110)
+...+..||.....-+..|+.+|+.+.+....+-..+-.... ......++.+...-+..++..+..---.++.
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~ 147 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMI-------ASAKEEIEQEKRRALDVLRNEVADLAVKGAE 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555444444444444443333 2233444444554454544444443333333
Q ss_pred HHH
Q 033870 100 MLL 102 (110)
Q Consensus 100 ~Ll 102 (110)
.+|
T Consensus 148 kil 150 (175)
T PRK14472 148 KII 150 (175)
T ss_pred HHH
Confidence 333
No 76
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=83.33 E-value=16 Score=27.02 Aligned_cols=71 Identities=10% Similarity=0.201 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033870 20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAEKIQYDVVQ 99 (110)
Q Consensus 20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~ 99 (110)
..+.+.+||..-.+-..+|+..+..|.+.=+..-|.++. .--...|+.|.....+-+....+
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~------------------~~~~~~~~~~~~~~~~~~~~~~~ 128 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK------------------NSINQNIEDINLAAKQFRTNKSE 128 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444444444444444444444444444444444444 33344455555555555555555
Q ss_pred HHHHhhccc
Q 033870 100 MLLKHVTTV 108 (110)
Q Consensus 100 ~Ll~~V~~V 108 (110)
-|++..|+|
T Consensus 129 ~~i~~~~~i 137 (155)
T PRK06569 129 AIIKLAVNI 137 (155)
T ss_pred HHHHHHHHH
Confidence 566555554
No 77
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=82.80 E-value=20 Score=27.77 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAERE-------IAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~E-------Ie~yr~~kE~ef~~~~~~ 63 (110)
.+..+..+...++..||..-..-+.+|+.+|+.- ++.++.+.++-++.-..+
T Consensus 34 ~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 34 ELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667889999999999999999999988865 355666666666654433
No 78
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=81.94 E-value=15 Score=25.55 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870 27 ARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS 65 (110)
Q Consensus 27 AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~ 65 (110)
....-..+|.+|+.+|..-++..+.+-+.+.........
T Consensus 58 ~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~ 96 (140)
T PRK07353 58 LEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQ 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444568888888888888888888888877665544
No 79
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=81.20 E-value=18 Score=26.08 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRA 51 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~ 51 (110)
.|..++..|+.+|...-..++......+.++++..+.
T Consensus 16 eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (198)
T PF01991_consen 16 EAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444444444444333
No 80
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=81.20 E-value=18 Score=26.26 Aligned_cols=38 Identities=26% Similarity=0.158 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 21 QHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 21 ~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
...+..||......+.+|+.+|+.+.+....+-+++-.
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~ 114 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMA 114 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333333
No 81
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=80.51 E-value=17 Score=25.54 Aligned_cols=27 Identities=52% Similarity=0.521 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAERE 45 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~E 45 (110)
+|..|++.||..-.+-+.+|..+++..
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~ 40 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEAS 40 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999888888888877653
No 82
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=79.77 E-value=24 Score=26.74 Aligned_cols=49 Identities=35% Similarity=0.394 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
.|+.+|..|..+|+..-.+...+|+.+|+.-++.+....+.+-......
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~ 62 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQR 62 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888777788888888888877777766666544433
No 83
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=79.31 E-value=28 Score=27.21 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
.+-.+..+|..++.+|+..-..-|-.|+..++..+..++.+.|.-++.-.
T Consensus 71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~ 120 (281)
T PRK06669 71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAK 120 (281)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788899999999999999999999999999999988888777433
No 84
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=79.13 E-value=27 Score=26.91 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
++...+.+|+......+.+|+.+|+.+.+....+-..+...
T Consensus 61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~ 101 (246)
T TIGR03321 61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544444444444433
No 85
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.08 E-value=28 Score=27.14 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
++...+..|+..+...+.+|+.+|+.+.+....+-..+.....
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~ 103 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATAR 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665555544444444333
No 86
>PRK12705 hypothetical protein; Provisional
Probab=76.95 E-value=50 Score=28.78 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033870 19 EAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES 64 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~ 64 (110)
.|.+|+.+|++.-....+++-.+|..|+..+|.+-|.+++....+.
T Consensus 34 ~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999998876666789999999999999999999988765544
No 87
>PRK06328 type III secretion system protein; Validated
Probab=76.80 E-value=32 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 18 QEAQHIVAAARNAKMARLRQAKEEAEREIA 47 (110)
Q Consensus 18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe 47 (110)
-+|+.|+..||..-.+-+.+|..+++.-.+
T Consensus 29 ~~A~~il~~a~~~ae~i~~ea~~e~E~i~e 58 (223)
T PRK06328 29 LDAQELLEKTKEDSEAYTQETHEECEKLRE 58 (223)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999998888778777777666444
No 88
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=76.36 E-value=25 Score=25.07 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 27 ARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 27 AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
.+..-...|.+|+.+|..-|+..+.+-+........+
T Consensus 58 ~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~ 94 (159)
T PRK13461 58 LKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKE 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566666666666666666666665554433
No 89
>PRK06937 type III secretion system protein; Reviewed
Probab=76.04 E-value=30 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033870 19 EAQHIVAAARNAKMARLRQAKE 40 (110)
Q Consensus 19 eA~~iV~~AR~~r~krLKqAK~ 40 (110)
+|.+|++.||..-..-+.+|+.
T Consensus 31 ~A~~il~~A~~~A~~i~~~A~~ 52 (204)
T PRK06937 31 SAEELVEAARQRAEEIEAEAQE 52 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776655655543
No 90
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=75.90 E-value=32 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQV 53 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~k 53 (110)
-|..-+.|+.++...+.+|..++.+.+..|+.+|++-+..=...+
T Consensus 154 a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 154 AFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777776554433333
No 91
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=75.90 E-value=21 Score=23.87 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE 63 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~ 63 (110)
+|.+....++.+||..-...+...+.++..+...|..+-+.........
T Consensus 22 ~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~ 70 (105)
T PF03179_consen 22 EARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEE 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 4666666677777776666667777777776666666665555444433
No 92
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=73.90 E-value=11 Score=31.75 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 10 IQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI 46 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI 46 (110)
+..-+.|+.+-...+.+|..|+.+-+-.|+-+|+.=|
T Consensus 251 f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii 287 (419)
T PRK10930 251 FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRIL 287 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666666666655
No 93
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=73.38 E-value=71 Score=30.09 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNA 88 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~ 88 (110)
-||.|+++|..+.+-- .+.+|--.++..|+.|.+.-|...|++-+.-+..-.-......+.+.++++.+.+.-+.
T Consensus 928 k~qE~~E~ER~rrEae-----ek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~ 1002 (1259)
T KOG0163|consen 928 KIQELAEAERKRREAE-----EKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQ 1002 (1259)
T ss_pred HHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4667776665443321 23334456666777777776666665554333222222334455666777766655554
Q ss_pred HHHHhHHHHHH
Q 033870 89 GAEKIQYDVVQ 99 (110)
Q Consensus 89 ~~~~nk~~Vv~ 99 (110)
.-+...|.-+.
T Consensus 1003 ~Eqer~D~~la 1013 (1259)
T KOG0163|consen 1003 LEQERRDHELA 1013 (1259)
T ss_pred HHHHHHHHHHH
Confidence 44445554443
No 94
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=72.47 E-value=35 Score=24.90 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
....++..++.+||....+.+.+|+.+|+.+.+..-.+-..+.....
T Consensus 74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~ 120 (167)
T PRK08475 74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI 120 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777888887778888888888777776666666665554
No 95
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=70.64 E-value=45 Score=25.44 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREF 57 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef 57 (110)
.|..-+.|+.++...+.+|..++.+.+.+|+.+|.+-+-.-.+.++...
T Consensus 181 a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~ 229 (266)
T cd03404 181 AFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVI 229 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHH
Confidence 5777888999999999999888888888888888887666666655543
No 96
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=70.10 E-value=45 Score=25.23 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 33 ARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 33 krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
.+|.+|+.+|..-++..+.+-+........
T Consensus 107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~ 136 (205)
T PRK06231 107 QRHENALAQAKEIIDQANYEALQLKSELEK 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555544443
No 97
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=69.64 E-value=29 Score=26.53 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAE 48 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~ 48 (110)
+...+||.+|..++.+|+....+.+-+|+.+++..+..
T Consensus 167 ~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~ 204 (261)
T TIGR01933 167 RYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINR 204 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777776666666555555544
No 98
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=68.72 E-value=45 Score=24.66 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 033870 42 AEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAG 89 (110)
Q Consensus 42 A~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~ 89 (110)
+..|.+..+.+.|+++.+-..+...-..+...++..+...+...+...
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544444433333333444444444444444333
No 99
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=67.04 E-value=54 Score=24.99 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAER 44 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~ 44 (110)
+||.+|..++.+|+....+..-+|+.+++.
T Consensus 198 eae~~a~~~~~~A~~ea~~~~~~A~a~~~~ 227 (266)
T cd03404 198 EAEAYANEVVPKARGEAARIIQEAEAYKEE 227 (266)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 344444444444444444333344333333
No 100
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=64.47 E-value=40 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHR 50 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr 50 (110)
.|..-..|+.+....+.+|..+|...+..|+.+|++.+..=.
T Consensus 148 A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Ae 189 (262)
T cd03407 148 AMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGV 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 466677888888888999999998888888888887776533
No 101
>PRK09098 type III secretion system protein HrpB; Validated
Probab=63.73 E-value=67 Score=24.88 Aligned_cols=33 Identities=45% Similarity=0.491 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAER 44 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~ 44 (110)
-|=.|..+|.+||.+||..-..-+-+|+.+++.
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999988888888888765
No 102
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=62.82 E-value=51 Score=23.16 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSG 66 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g 66 (110)
+..=+|..++..||.+||..-..-+-+|-.+|...-..|=...+++-...-....+
T Consensus 21 ~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~ 76 (108)
T COG2811 21 EEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILA 76 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446777777888888777666677777777777666666666555554444443
No 103
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=62.63 E-value=63 Score=24.20 Aligned_cols=36 Identities=36% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIA 47 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe 47 (110)
-|=.|..+|..||.+|+.....-+.+|.++|..++-
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~ 70 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFW 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999988888888888866653
No 104
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=61.70 E-value=68 Score=24.29 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 14 LAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
+.+++-...|..+|+..-..-+..|+.+|.+..+.-+..-+.-+..
T Consensus 2 ~~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~ 47 (194)
T COG1390 2 MELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEE 47 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888866544445556666655555555444444443
No 105
>PRK12704 phosphodiesterase; Provisional
Probab=60.07 E-value=1.2e+02 Score=26.41 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870 18 QEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS 65 (110)
Q Consensus 18 keA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~ 65 (110)
..|..++..|+..-..-+++|..+|+.++...+.+-+.++.....+..
T Consensus 27 ~~a~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele 74 (520)
T PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777777666667777777777777777777777766655543
No 106
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=58.97 E-value=65 Score=23.43 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033870 73 KRLEQETEVKIHHLNAGAE 91 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~ 91 (110)
..++.+...+...|...|+
T Consensus 121 ~~vdee~~~~~~~l~e~Y~ 139 (145)
T PF14942_consen 121 QRVDEEFREKEERLKEQYS 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554443
No 107
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=57.20 E-value=65 Score=22.58 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMA 33 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~k 33 (110)
|-.|..+|..|+.+|+.....
T Consensus 19 l~~A~~~a~~i~~~A~~~~e~ 39 (166)
T TIGR02499 19 LAAARQRAEAILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999885433
No 108
>PF01468 GA: GA module; InterPro: IPR002988 Protein G-related albumin-binding (GA) modules occur on the surface of numerous Gram-positive bacterial pathogens. Protein G of group C and G Streptococci interacts with the constant region of IgG and with human serum albumin. The GA module is composed of a left-handed three-helix bundle and is found in a range of bacterial cell surface proteins [, ]. GA modules may promote bacterial growth and virulence in mammalian hosts by scavenging albumin-bound nutrients and camouflaging the bacteria. Variations in sequence give rise to differences in structure and function between GA modules in different proteins, which could alter pathogenesis and host specificity due to their varied affinities for different species of albumin []. Proteins containing a GA module include PAB from Peptostreptococcus magnus [].; GO: 0009405 pathogenesis; PDB: 2DGJ_B 1GJS_A 1GJT_A 2FS1_A 1GAB_A 2J5Y_B 1PRB_A 1TF0_B 2VDB_B 1XVH_B ....
Probab=53.13 E-value=36 Score=20.81 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=21.1
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 033870 24 VAAARNA--KMARLRQAKEEAEREIAEHR 50 (110)
Q Consensus 24 V~~AR~~--r~krLKqAK~eA~~EIe~yr 50 (110)
|..|+.. -..+|..||..|..+|..+-
T Consensus 1 v~~ak~~Lng~~~L~~aK~~A~~~I~~L~ 29 (60)
T PF01468_consen 1 VNQAKNALNGDQKLANAKQNAKQEINQLT 29 (60)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCCT
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444543 67899999999999999876
No 109
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=44.15 E-value=1.1e+02 Score=21.45 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 20 AQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 20 A~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
+.+-|+.-.+....-+|.|+..-..++..+-.+-...|+.+.
T Consensus 22 ~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l 63 (111)
T PRK06397 22 IDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAAL 63 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444445555555666666666666666555555555554
No 110
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.65 E-value=8.7 Score=26.17 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIA 47 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe 47 (110)
.|..|++.+..++..|...-...+..|+.+|..=|+
T Consensus 68 ~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~ 103 (131)
T PF05103_consen 68 ALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIE 103 (131)
T ss_dssp ------------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655556666655554433
No 111
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=37.23 E-value=1.7e+02 Score=21.66 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033870 17 EQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESS 65 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~ 65 (110)
|+=-.+|..+|+.....-+.+|+.+|..=+..-+..-+.....+.....
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~ 52 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMR 52 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578888888888888888887777777777666666666654443
No 112
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=35.73 E-value=2.3e+02 Score=22.65 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAE 91 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~ 91 (110)
++|.+|+.|..+|+....+-+-+| .++-...+++=|.+.-+......+.+-... ....-|+.++..+.
T Consensus 231 ege~~a~~i~a~A~~e~~~~~aeA----~a~a~~~~Aegea~a~~~~~~a~~~~p~~~-----~~~~~le~~~~~~~ 298 (317)
T TIGR01932 231 QGEEKAEEILGKAEYEVRKILSEA----YRTARIIKGEGDAEAAKIYSDAYGKDPEFY-----SFWRSLEAYEKSFK 298 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHccCHHHH-----HHHHHHHHHHHHhC
Confidence 444555566666666655444433 333455556666666555554444332222 11334555555554
No 113
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=33.77 E-value=2e+02 Score=21.38 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 033870 35 LRQAKEEAEREIAE 48 (110)
Q Consensus 35 LKqAK~eA~~EIe~ 48 (110)
+..|+.+|+.-|..
T Consensus 194 ~~~Aea~a~a~~~~ 207 (242)
T cd03405 194 VILAEAYREAQEIR 207 (242)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455444444443
No 114
>PF12750 Maff2: Maff2 family; InterPro: IPR024272 This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein family may contain transmembrane helices.
Probab=30.55 E-value=24 Score=22.89 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=8.4
Q ss_pred cchhHHHHHH
Q 033870 6 GHGGIQQLLA 15 (110)
Q Consensus 6 ~s~gIQqLL~ 15 (110)
+||||.||+.
T Consensus 42 ksqgiKQlma 51 (70)
T PF12750_consen 42 KSQGIKQLMA 51 (70)
T ss_pred hhhhHHHHHc
Confidence 4899999984
No 115
>PRK15322 invasion protein OrgB; Provisional
Probab=29.47 E-value=2.8e+02 Score=21.71 Aligned_cols=31 Identities=39% Similarity=0.362 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 14 LAAEQEAQHIVAAARNAKMARLRQAKEEAER 44 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~ 44 (110)
|.+=+.|..++.+|++.=..-+++|..||+.
T Consensus 8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 8 LERYFSAERLEQQARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888777777777766654
No 116
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=28.83 E-value=1.6e+02 Score=22.56 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 10 IQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAER 44 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~ 44 (110)
......||-.....+..|+.++.+.+-+|+-+|+.
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a 194 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQ 194 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33445555555556666666665555555554443
No 117
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=28.38 E-value=1.7e+02 Score=21.00 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 033870 35 LRQAKEEAEREIAE 48 (110)
Q Consensus 35 LKqAK~eA~~EIe~ 48 (110)
+.+|+.||++.+..
T Consensus 175 ~~~a~~ea~~~~~~ 188 (196)
T cd03401 175 VEKAEQEKQAAVIR 188 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544443
No 118
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=27.21 E-value=1.5e+02 Score=22.71 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033870 35 LRQAKEEAEREIAEHRAQVEREFQRKLAESSG 66 (110)
Q Consensus 35 LKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g 66 (110)
..+-+.+|+++|+.|-.+++....+..+.+.-
T Consensus 136 k~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~ 167 (225)
T PF01086_consen 136 KEEIKEKAKKELDDFYENRNEKKEKNKKQNRE 167 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999888887776665553
No 119
>PRK11677 hypothetical protein; Provisional
Probab=26.78 E-value=2.5e+02 Score=20.24 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 30 AKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 30 ~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
.+.+.|..--+.++.|+++||.+-...|-
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999887
No 120
>PRK15322 invasion protein OrgB; Provisional
Probab=26.30 E-value=3.2e+02 Score=21.37 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMA 33 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~k 33 (110)
+|.+.|.+|+.+|...-..
T Consensus 20 qA~~kA~~ii~qA~~eaE~ 38 (210)
T PRK15322 20 QARRRAKRILRQAEEEAET 38 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665433
No 121
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=26.29 E-value=3.1e+02 Score=21.30 Aligned_cols=23 Identities=43% Similarity=0.341 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 033870 8 GGIQQLLAAEQEAQHIVAAARNA 30 (110)
Q Consensus 8 ~gIQqLL~AEkeA~~iV~~AR~~ 30 (110)
+|.+-|-.|+.+|..|...||..
T Consensus 31 da~~~~aAA~~~A~~ir~~Ar~a 53 (207)
T PF06635_consen 31 DAAAFLAAARREAQRIREWARAA 53 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777764
No 122
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.09 E-value=5.1e+02 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 28 RNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 28 R~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
++.+.+.+.+|+.+|..-|...|.+-+.-+++...
T Consensus 561 ~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 561 QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666655555555443
No 123
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.85 E-value=2.4e+02 Score=21.11 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccc
Q 033870 84 HHLNAGAEKIQYDVVQMLLKHVTTV 108 (110)
Q Consensus 84 ~~i~~~~~~nk~~Vv~~Ll~~V~~V 108 (110)
..+-....+|++. ++.++..=+.+
T Consensus 100 ~~i~~~l~~~~~~-~~~m~~ee~g~ 123 (213)
T PF01988_consen 100 EEIAEELSKDKDA-LDFMMREELGL 123 (213)
T ss_pred HHHHHHHHhCchH-HHHHHhhhccC
Confidence 4455666667777 77766544433
No 124
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.48 E-value=1.7e+02 Score=17.74 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033870 73 KRLEQETEVKIHHLNAGAEKIQYDVVQML 101 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~~nk~~Vv~~L 101 (110)
..|+.+-+.+|.+++..|..++.-++|-+
T Consensus 18 ~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 18 ASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 46788889999999999999999888754
No 125
>PRK10428 hypothetical protein; Provisional
Probab=24.45 E-value=2e+02 Score=18.32 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQ 52 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~ 52 (110)
++++|=.+..++-.+.+. .-.+|++|..+|+.|...
T Consensus 29 ~~~~eG~~dql~GkiQe~----~G~~Kd~a~~~~~~~~~~ 64 (69)
T PRK10428 29 MTVIEGKRDQLVGKIQER----YGYQKDQAEKEVVDWETR 64 (69)
T ss_pred HHHHcCcHHHHHHHHHHH----HhHHHHHHHHHHHHHHHh
Confidence 566666666777666554 678999999999998754
No 126
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.42 E-value=5.7e+02 Score=23.33 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 21 QHIVAAARNAKMARLRQAKEEAEREIAEHR 50 (110)
Q Consensus 21 ~~iV~~AR~~r~krLKqAK~eA~~EIe~yr 50 (110)
.+++.+|++.-.+-|++|+.+|+.=|..+|
T Consensus 565 ~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 565 DKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 127
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.21 E-value=7e+02 Score=23.85 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 10 IQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVER 55 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ 55 (110)
++.|............++...+...+..+...+..++..+..+.+.
T Consensus 658 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 658 LQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554455555555555555555555555555555444444433
No 128
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=20.48 E-value=3.5e+02 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 16 AEQEAQHIVAAARNAKMARLRQAKEEAEREIAE 48 (110)
Q Consensus 16 AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~ 48 (110)
+++.+..--.++.+.+-+++++.|-+|..||+.
T Consensus 331 ~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~ 363 (429)
T PRK00247 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINR 363 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333344445556677777777777766
No 129
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.30 E-value=1.2e+02 Score=18.18 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033870 29 NAKMARLRQAKEEAEREIAEH 49 (110)
Q Consensus 29 ~~r~krLKqAK~eA~~EIe~y 49 (110)
+++.++++..-...++|+++.
T Consensus 47 r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666667776654
No 130
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=20.19 E-value=1.9e+02 Score=23.05 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=23.4
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQ--EAQHIVAAARNAKMARLRQAKEEAEREIA 47 (110)
Q Consensus 9 gIQqLL~AEk--eA~~iV~~AR~~r~krLKqAK~eA~~EIe 47 (110)
.|..=+.||+ .|...-.+|..+.....-+|+.+|.+-+.
T Consensus 212 Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~a 252 (317)
T TIGR01932 212 SIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILS 252 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556665 44566667766666655666666666555
No 131
>PF00938 Lipoprotein_3: Lipoprotein This Pfam family is a subset of the Prosite family.; InterPro: IPR001595 This family of lipoproteins is Mycoplasma specific, and includes a variety of hypothetical proteins []. They all have a prokaryotic membrane lipoprotein lipid attachment site which is probable acts as a membrane anchor.
Probab=20.10 E-value=1.2e+02 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 033870 79 TEVKIHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 79 t~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
-..-|..++.+|..|....+..||+.
T Consensus 28 KknlItsLKksYe~np~~Tt~~LL~a 53 (87)
T PF00938_consen 28 KKNLITSLKKSYEVNPKKTTNLLLDA 53 (87)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHH
Confidence 34558899999999999999999975
No 132
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=20.08 E-value=3.5e+02 Score=19.58 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREI 46 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EI 46 (110)
.|..-+.||.++...+..|+..+......|..+++.++
T Consensus 149 ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 149 AMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 45666778888877777777776666666655555443
Done!