Query 033870
Match_columns 110
No_of_seqs 104 out of 262
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_G V-type proton ATPase su 100.0 1.4E-42 4.8E-47 244.6 10.6 104 7-110 9-112 (119)
2 3v6i_A V-type ATP synthase sub 96.7 0.017 5.8E-07 41.6 10.0 88 15-103 10-109 (187)
3 2k6i_A Uncharacterized protein 96.6 0.0046 1.6E-07 37.9 5.2 36 9-44 17-52 (56)
4 1l2p_A ATP synthase B chain; a 95.9 0.13 4.4E-06 30.7 9.0 48 11-58 2-49 (61)
5 3v6i_B V-type ATP synthase, su 94.9 0.55 1.9E-05 31.8 13.9 89 7-106 5-104 (105)
6 2kk7_A V-type ATP synthase sub 94.5 0.12 4.3E-06 30.6 5.8 43 1-45 1-48 (52)
7 4efa_E V-type proton ATPase su 94.4 0.94 3.2E-05 33.4 11.7 91 14-104 26-128 (233)
8 2dm9_A V-type ATP synthase sub 91.1 0.19 6.5E-06 35.2 3.5 45 15-59 14-58 (198)
9 2dm9_A V-type ATP synthase sub 79.4 0.41 1.4E-05 33.4 0.2 18 13-30 23-40 (198)
10 1l2p_A ATP synthase B chain; a 70.4 13 0.00045 21.5 9.4 39 23-61 3-41 (61)
11 2kk7_A V-type ATP synthase sub 63.9 19 0.00064 20.8 6.0 39 17-55 9-47 (52)
12 3v6i_A V-type ATP synthase sub 49.7 63 0.0021 22.5 13.1 40 23-62 7-46 (187)
13 3v6i_B V-type ATP synthase, su 44.4 69 0.0024 21.4 13.3 12 47-58 71-82 (105)
14 4efa_E V-type proton ATPase su 40.9 99 0.0034 22.2 14.1 39 17-55 18-56 (233)
15 1use_A VAsp, vasodilator-stimu 38.7 56 0.0019 18.7 4.7 36 72-107 6-41 (45)
16 3lvg_D LCB, clathrin light cha 30.9 1.2E+02 0.0042 22.1 5.8 51 36-86 110-160 (190)
17 3ghg_A Fibrinogen alpha chain; 22.6 3.6E+02 0.012 22.9 8.8 77 12-94 54-130 (562)
18 2fs1_A PSD-1; solution structu 21.8 1E+02 0.0035 18.4 3.3 20 32-51 6-25 (56)
No 1
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=100.00 E-value=1.4e-42 Score=244.63 Aligned_cols=104 Identities=32% Similarity=0.444 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870 7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL 86 (110)
Q Consensus 7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i 86 (110)
|+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++++..+++.+|+.+|+.|
T Consensus 9 s~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki~~i 88 (119)
T 4efa_G 9 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGELAEI 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhhcccCC
Q 033870 87 NAGAEKIQYDVVQMLLKHVTTVKN 110 (110)
Q Consensus 87 ~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
+.+|.+|++.||++||++||||+|
T Consensus 89 ~~~~~~~k~~Vv~~Ll~~V~dvkp 112 (119)
T 4efa_G 89 KKIAEKKKDDVVKILIETVIKPSA 112 (119)
T ss_dssp HHHHHHTHHHHHHHHHHHHSCC--
T ss_pred HHHHHHhHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999998
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.74 E-value=0.017 Score=41.59 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCchhHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAES------------SGDSGANVKRLEQETEVK 82 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~------------~g~~~~~~~~l~~et~~~ 82 (110)
+|+.+|..|+++|+..-..-+.+|+.+|+...+.....-+.+.+...... +....+....+-.++...
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~ 89 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA 89 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999888877777766553322 223344455555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 033870 83 IHHLNAGAEKIQYDVVQMLLK 103 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~Ll~ 103 (110)
|..+-.+ ..+.+-+.++++.
T Consensus 90 L~~~~~~-~~Y~~~L~~Li~e 109 (187)
T 3v6i_A 90 LEALPQK-PEWPEVVRKLALE 109 (187)
T ss_dssp HHHGGGS-TTHHHHHHHHHHH
T ss_pred HHhhhCC-ccHHHHHHHHHHH
Confidence 5555443 2233444444443
No 3
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=96.60 E-value=0.0046 Score=37.89 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 9 GIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEAER 44 (110)
Q Consensus 9 gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~ 44 (110)
-|..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus 17 vL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 17 AIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566899999999999999999999999999974
No 4
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=95.87 E-value=0.13 Score=30.66 Aligned_cols=48 Identities=38% Similarity=0.399 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 11 QQLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQ 58 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~ 58 (110)
+.|-.|..+|..||..|++...+...++..+|..|.+....+--.+..
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie 49 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998888888887777777766655444443
No 5
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=94.86 E-value=0.55 Score=31.83 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 033870 7 HGGIQQLLAAEQEAQHIVAAARNAKMARLRQAKEEA-----------EREIAEHRAQVEREFQRKLAESSGDSGANVKRL 75 (110)
Q Consensus 7 s~gIQqLL~AEkeA~~iV~~AR~~r~krLKqAK~eA-----------~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l 75 (110)
...|+.|-.=|.+=...+..||+.=...++.|..+| ...-.+|+..-+.+-. .+..+.
T Consensus 5 ~gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~ea 73 (105)
T 3v6i_B 5 LGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLARY 73 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 445666655555555555555555555555555444 4444444444444433 344555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 033870 76 EQETEVKIHHLNAGAEKIQYDVVQMLLKHVT 106 (110)
Q Consensus 76 ~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~ 106 (110)
.......-+.++.....+-+..|..+|..|+
T Consensus 74 ra~Aeaea~~v~~~A~~r~~~Av~~vLkeVL 104 (105)
T 3v6i_B 74 RERAEAEAKAVREKAMARLDEAVALVLKEVL 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 5666777788899999999999999999886
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=94.53 E-value=0.12 Score=30.56 Aligned_cols=43 Identities=37% Similarity=0.485 Sum_probs=31.2
Q ss_pred CCCcccchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 1 MASNRGHGGIQQLL-----AAEQEAQHIVAAARNAKMARLRQAKEEAERE 45 (110)
Q Consensus 1 Mas~~~s~gIQqLL-----~AEkeA~~iV~~AR~~r~krLKqAK~eA~~E 45 (110)
|+.. -.|+..|. .|..+|..|+.+|+..-..-+.+|+.+|+.+
T Consensus 1 ~~~~--~~gle~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 1 MAVK--LMGVDKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp CCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred Ccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 34665544 5888888888888888888888888887764
No 7
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=94.39 E-value=0.94 Score=33.40 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCchhHHHHHHHHHHH
Q 033870 14 LAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAE------------SSGDSGANVKRLEQETEV 81 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~------------~~g~~~~~~~~l~~et~~ 81 (110)
-+|+.+|.+|..+|...-..-..++..++...|..+...++++....... .+...++....+-.++..
T Consensus 26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~ 105 (233)
T 4efa_E 26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE 105 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999887555555555666666666555555444322211 233344555556666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 033870 82 KIHHLNAGAEKIQYDVVQMLLKH 104 (110)
Q Consensus 82 ~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
+|..+..+-..++.-+..+++..
T Consensus 106 ~L~~~~~d~~~Y~~lL~~Li~ea 128 (233)
T 4efa_E 106 KLSGIANNRDEYKPILQSLIVEA 128 (233)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHH
Confidence 66666544444444444444443
No 8
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=91.08 E-value=0.19 Score=35.19 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 15 AAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQR 59 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~ 59 (110)
.|+.+|..|+.+|+.....-+.+|+.+|..+.+.+..+-+.+...
T Consensus 14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~ 58 (198)
T 2dm9_A 14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58 (198)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999988877776666555443
No 9
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=79.41 E-value=0.41 Score=33.44 Aligned_cols=18 Identities=39% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033870 13 LLAAEQEAQHIVAAARNA 30 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~ 30 (110)
|-.|..+|.+|+.+|+..
T Consensus 23 l~eA~~~a~~i~~~a~~e 40 (198)
T 2dm9_A 23 LNEARQQAEKIKEEARRN 40 (198)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666554
No 10
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=70.41 E-value=13 Score=21.50 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 23 IVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKL 61 (110)
Q Consensus 23 iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~ 61 (110)
++.+||..-...+.+|+..|...++....+-..+-....
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~ 41 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666555555555555444444333
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=63.93 E-value=19 Score=20.84 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 17 EQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVER 55 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ 55 (110)
++=-.+|+.+|+..-..-|.+|+.+|..=++.-+.+-+.
T Consensus 9 e~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999998888999998888888776665443
No 12
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=49.70 E-value=63 Score=22.47 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 23 IVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLA 62 (110)
Q Consensus 23 iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~ 62 (110)
|=.+|+..-..-+.+|+.+|..=+++.+.+-+........
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~ 46 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARER 46 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777777777766666666655443
No 13
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=44.40 E-value=69 Score=21.44 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 033870 47 AEHRAQVEREFQ 58 (110)
Q Consensus 47 e~yr~~kE~ef~ 58 (110)
+.||.+-+.+-+
T Consensus 71 ~eara~Aeaea~ 82 (105)
T 3v6i_B 71 ARYRERAEAEAK 82 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 14
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=40.91 E-value=99 Score=22.25 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033870 17 EQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVER 55 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ 55 (110)
++-.+-|.++|+..-..-+..|.+||..|......+...
T Consensus 18 ~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~ 56 (233)
T 4efa_E 18 NKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETN 56 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889998887778888999988877766555443
No 15
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=38.65 E-value=56 Score=18.73 Aligned_cols=36 Identities=6% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 033870 72 VKRLEQETEVKIHHLNAGAEKIQYDVVQMLLKHVTT 107 (110)
Q Consensus 72 ~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~~ 107 (110)
..+++.=-+.-|.+++..+++-|+.+|+-+..-++.
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355777777889999999999999999988776543
No 16
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=30.93 E-value=1.2e+02 Score=22.12 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 033870 36 RQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHL 86 (110)
Q Consensus 36 KqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i 86 (110)
.+-++.|+++|+.|-..+.....+-.+.+......+....+..+-.=+-.|
T Consensus 110 eEwrEKAKKELDDWYenYNEQ~EKnKa~NR~aEEeFLaqRddttiGyV~~~ 160 (190)
T 3lvg_D 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIXXXXXX 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHHCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccchhhhhccc
Confidence 366788999999999999888887777777666666655555544433333
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.60 E-value=3.6e+02 Score=22.92 Aligned_cols=77 Identities=8% Similarity=0.160 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 033870 12 QLLAAEQEAQHIVAAARNAKMARLRQAKEEAEREIAEHRAQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLNAGAE 91 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~krLKqAK~eA~~EIe~yr~~kE~ef~~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~ 91 (110)
.|++.|+.-..+|++=|.. |.+- ..--++++.|-...-..++.....+. .++....++-.+-+..|..|+..+.
T Consensus 54 lLdkqErDltkrINELKnq----LEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNS----LFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHH----HHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999988876 2232 44456667765555555554444333 4444444554455555555555554
Q ss_pred HhH
Q 033870 92 KIQ 94 (110)
Q Consensus 92 ~nk 94 (110)
.+.
T Consensus 128 nQl 130 (562)
T 3ghg_A 128 EKV 130 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 18
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=21.76 E-value=1e+02 Score=18.37 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033870 32 MARLRQAKEEAEREIAEHRA 51 (110)
Q Consensus 32 ~krLKqAK~eA~~EIe~yr~ 51 (110)
...|++||+.|-.|...|=-
T Consensus 6 ~~~L~eAKe~Ai~El~~~GI 25 (56)
T 2fs1_A 6 ANSLAQAKEAAIKELKQYGI 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 45689999999888877543
Done!