BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033874
         (110 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31779|YMCA_BACSU Uncharacterized protein YmcA OS=Bacillus subtilis (strain 168)
          GN=ymcA PE=1 SV=1
          Length = 143

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 25 LASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEESSSAK 82
          L S+K +   A+N +K + E  +  F      Q+N + K++ I N++KAL++++ + K
Sbjct: 3  LYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLK 60


>sp|A0RQZ4|IF2_CAMFF Translation initiation factor IF-2 OS=Campylobacter fetus subsp.
           fetus (strain 82-40) GN=infB PE=3 SV=1
          Length = 838

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 32  EDAAQNSSKAVGEANKTGFVGG---TSGQMNRSAKIAAIKNKLKALEEESSSAKKQKQAD 88
           E+  Q   + V    K G + G   T G +NR AKI  I++ +   E   SS K+ K  D
Sbjct: 742 EELGQAVIRQVINVPKIGQIAGCMVTDGSINRGAKIRVIRDGVVVFEGNVSSLKRFKD-D 800

Query: 89  NSSCNGSLNCLSGKDGLNNLQ 109
                    C  G +G N+++
Sbjct: 801 VKEVAKGYECGVGIEGYNDMR 821


>sp|Q6HA09|ASTL_MOUSE Astacin-like metalloendopeptidase OS=Mus musculus GN=Astl PE=1 SV=3
          Length = 435

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 37  NSSKAVGEANKTGFVGGTSGQMNRSAKIAAIKNKLKALEEES-SSAKKQKQADNSSCNGS 95
           N S++V +++  GF   + G     A I+ ++  L+AL EES SSA    +    S  G 
Sbjct: 280 NCSRSVPDSHGRGFEAQSDGSSLTPASISRLQRLLEALSEESGSSAPSGSRTGGQSIAGL 339

Query: 96  LNCLSG 101
            N   G
Sbjct: 340 GNSQQG 345


>sp|Q5AD27|TAH18_CANAL Probable NADPH reductase TAH18 OS=Candida albicans (strain SC5314 /
           ATCC MYA-2876) GN=TAH18 PE=3 SV=1
          Length = 589

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 29  KYLEDAAQNSSKAVG----EANKTGFVGGTSGQMNRSAKIAAIK--NKLKALEE 76
           +Y++DA    S+ +G    E N   FV G+SG+M R  KI  ++   K   ++E
Sbjct: 515 RYVQDALFAHSELIGKLLIEQNAKVFVCGSSGKMPREVKITFVEIVKKFTGMDE 568


>sp|Q6PBM8|RBM18_DANRE Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1
          Length = 188

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLASEKYLEDAAQNSSKAVGEANKTGFVGGTSGQ---- 57
           +EA+ A + ++G+LA  + LVVR A        AQ      GE N    +  +S +    
Sbjct: 78  EEAERAIQCLNGKLALSKKLVVRWAH-------AQRFEPFRGEKNMPASLEPSSSEAEDL 130

Query: 58  ---MNRSAKIAAIKNKLKALEE 76
              ++ +AKI AI+ KL+ +EE
Sbjct: 131 PTSLSVNAKIRAIEAKLQMMEE 152


>sp|Q5R6W3|RBM18_PONAB Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1
          Length = 190

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQM 58
           QEA+ A + ++G+LA  + LVVR A    ++Y  D  +N          +     T   +
Sbjct: 80  QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRY--DHNKNDKILPISLEPSSSTEPTQSNL 137

Query: 59  NRSAKIAAIKNKLKALEE 76
           + +AKI AI+ KLK + E
Sbjct: 138 SVTAKIKAIEAKLKMMAE 155


>sp|Q96H35|RBM18_HUMAN Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1
          Length = 190

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 2   QEAKLAKEKMHGRLACGRPLVVRLAS---EKYLEDAAQNSSKAVGEANKTGFVGGTSGQM 58
           QEA+ A + ++G+LA  + LVVR A    ++Y  D  +N          +     T   +
Sbjct: 80  QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRY--DHNKNDKILPISLEPSSSTEPTQSNL 137

Query: 59  NRSAKIAAIKNKLKALEE 76
           + +AKI AI+ KLK + E
Sbjct: 138 SVTAKIKAIEAKLKMMAE 155


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.121    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,742,093
Number of Sequences: 539616
Number of extensions: 1130467
Number of successful extensions: 3413
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 57
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)