RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 033876
         (110 letters)



>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
          cysteine biosynthesis, transferase; HET: LLP; 1.80A
          {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A*
          3rr2_A
          Length = 313

 Score =  135 bits (342), Expect = 2e-40
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 8/79 (10%)

Query: 4  KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
             I +D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  G
Sbjct: 3  HMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAG 62

Query: 64 LITPGKCFCFQSTLI--TS 80
          LI P       + ++  TS
Sbjct: 63 LIKPD------TIILEPTS 75


>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
           assimilatory sulfate reduction, S plant inorganic sulfur
           uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
          Length = 430

 Score =  137 bits (347), Expect = 2e-40
 Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 7/81 (8%)

Query: 2   EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
            D   I  +V++LIG TPMVYLN++  GCVA+IAAKLE+M+PC SVKDRI YSM+ DAE 
Sbjct: 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQ 167

Query: 62  KGLITPGKCFCFQSTLI--TS 80
           KG I+PGK     S L+  TS
Sbjct: 168 KGFISPGK-----SVLVEPTS 183


>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
          thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
          Length = 322

 Score =  134 bits (341), Expect = 2e-40
 Identities = 53/76 (69%), Positives = 60/76 (78%), Gaps = 7/76 (9%)

Query: 7  IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
          I KDVTELIG+TP+VYLNNV +GCV  +AAKLEMM+PCSSVKDRI +SMI DAE KGLI 
Sbjct: 5  IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64

Query: 67 PGKCFCFQSTLI--TS 80
          PG+     S LI  TS
Sbjct: 65 PGE-----SVLIEPTS 75


>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
          dependent enzyme, serine ACET transferase; HET: LLP;
          1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A*
          4air_A*
          Length = 334

 Score =  130 bits (329), Expect = 2e-38
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 2  EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
          +    + + + +LIG TP +YLN + +   A +  K+E   P +SVKDR+ +++   AE 
Sbjct: 6  DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64

Query: 62 KGLITPGKCFCFQSTLI--TS 80
          +G + PGK     S ++  +S
Sbjct: 65 EGKLIPGK-----SIVVESSS 80


>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
          genomics/proteomics initi RSGI, structural genomics;
          HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
          PDB: 2eco_A* 2ecq_A* 2efy_A*
          Length = 304

 Score =  127 bits (321), Expect = 1e-37
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKC 70
          V   IG TP+V L  VV+  +A +  KLE + P  S+KDR A+ MIKDAE++G++ PG  
Sbjct: 3  VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS- 61

Query: 71 FCFQSTLI--TS 80
                ++  TS
Sbjct: 62 ---GQVIVEPTS 70


>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
          crystallography, sulfhydrylase; HET: LLP; 1.55A
          {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
          3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
          Length = 316

 Score =  125 bits (316), Expect = 1e-36
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 7  IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
          I  D +  IG+TP+V L +   G   ++  K+E   P  SVK RI  +M+  AE  G +T
Sbjct: 3  IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60

Query: 67 PGKCFCFQSTLI--TS 80
           GK       ++  TS
Sbjct: 61 KGK------EIVDATS 70


>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural
          genomics, NPPSFA, NAT project on protein structural and
          functional analyses; 1.90A {Geobacillus kaustophilus}
          Length = 308

 Score =  124 bits (314), Expect = 2e-36
 Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 7  IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
              +TELIG TP V LN +VD   A +  KLE M P SSVKDRIA +MI+ AE  G + 
Sbjct: 4  TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63

Query: 67 PGKCFCFQSTLI--TS 80
          PG       T++  TS
Sbjct: 64 PG------DTIVEPTS 73


>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
          histolytica} PDB: 3bm5_A*
          Length = 343

 Score =  121 bits (307), Expect = 4e-35
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 2  EDKCEIKKDVTELIGHTPMVYLNNVVDGCV----AHIAAKLEMMQPCSSVKDRIAYSMIK 57
            +  I  ++ E IG TP+V L+ V +         I  KLE   P SSVKDR+ ++++ 
Sbjct: 8  SPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVY 67

Query: 58 DAEDKGLITPGKCFCFQSTLI--TS 80
           A   G + PG        +I  TS
Sbjct: 68 QAIKDGRLKPGM------EIIESTS 86


>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
          transferase, ENZ kinetics, enzymatic sythesis of novel
          compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
          2bhs_A* 2bht_A* 2jc3_A*
          Length = 303

 Score =  114 bits (288), Expect = 1e-32
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
           + + IG+TP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG 
Sbjct: 3  TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62

Query: 70 CFCFQSTLI--TS 80
                 LI  TS
Sbjct: 63 ------VLIEATS 69


>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
          protein structure initiative, joint center for
          structural G transferase; 1.80A {Thermotoga maritima}
          SCOP: c.79.1.1 PDB: 3fca_A*
          Length = 303

 Score =  112 bits (282), Expect = 8e-32
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7  IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
              +  LIG TP+V L+++     + I  KLE   P  SVKDR A  MI DAE +GL+ 
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65

Query: 67 PG 68
           G
Sbjct: 66 NG 67


>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
          fold, amino-acid biosynthesis; HET: PLP; 1.53A
          {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
          3dwi_A*
          Length = 325

 Score =  107 bits (269), Expect = 1e-29
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)

Query: 7  IKKDVTELIGHTPMVYLNNVV-------DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDA 59
              + + +G+TP+V L  +        DG    + AKLE   P  S+KDR A  MI+ A
Sbjct: 5  RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64

Query: 60 EDKGLITPGKCFCFQSTLI--TS 80
          E  GL+ PG      +T++  TS
Sbjct: 65 EADGLLRPG------ATILEPTS 81


>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
           HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
           3pc2_A* 3pc4_A*
          Length = 527

 Score =  100 bits (252), Expect = 1e-26
 Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 10/84 (11%)

Query: 1   MEDKCEIKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKD 58
           +  + +I  ++ E+IG TP+V LNN+   DG    + AK E + P  SVKDRI Y M++D
Sbjct: 44  IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103

Query: 59  AEDKGLITPGKCFCFQSTLI--TS 80
           AE++GL+ PG       T+I  TS
Sbjct: 104 AEEQGLLKPG------YTIIEPTS 121


>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
           PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
           SCOP: c.79.1.1 PDB: 1m54_A*
          Length = 435

 Score = 98.2 bits (245), Expect = 9e-26
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 7   IKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
           I  D+ + IG TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G 
Sbjct: 98  ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157

Query: 65  ITPGKCFCFQSTLI--TS 80
           + PG       T+I  TS
Sbjct: 158 LKPG------DTIIEPTS 169


>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
           HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
          Length = 389

 Score = 87.8 bits (218), Expect = 5e-22
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 10  DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPG 68
           D  E    TP+V     +      +  KLE   P S SVKDR A  +I     +  +  G
Sbjct: 89  DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145

Query: 69  KCFCFQSTLI--TS 80
                 S +   TS
Sbjct: 146 ------SLVADATS 153


>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
          c.79.1.1 PDB: 1pwh_A* 1pwe_A*
          Length = 372

 Score = 33.4 bits (77), Expect = 0.009
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)

Query: 1  MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIK--- 57
          M    E       L   TP+     +       +  K++  QP  S K R      K   
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89

Query: 58 DAEDKGLIT 66
                 + 
Sbjct: 90 KQGCAHFVC 98


>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
           defensive PROT jasmonic acid pathway, jasmonic
           acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
           lycopersicum}
          Length = 366

 Score = 31.4 bits (72), Expect = 0.037
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 11  VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
           V ++   +P+     + D    +   K E  Q   S K R AY+M+    ++  DKG+IT
Sbjct: 54  VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113


>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
          {Aquifex aeolicus}
          Length = 352

 Score = 31.1 bits (71), Expect = 0.044
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 16 GHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
          G+TP++  +N+    G    I  K E + P  S KDR     I  A + G
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG 78


>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative,
          tetramer, regulation, pyridoxal PHOS isoleucine
          biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP:
          c.79.1.1 d.58.18.2 d.58.18.2
          Length = 514

 Score = 31.0 bits (71), Expect = 0.053
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
          V E    TP+  +  +       I  K E  QP  S K R AY+M+    ++ +  G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84


>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
          cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A
          {Homo sapiens}
          Length = 318

 Score = 30.2 bits (69), Expect = 0.086
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 14 LIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIK---DAEDKGLIT 66
              TP++    +       +  K E +QP  S K R      +       + L+ 
Sbjct: 4  FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVC 59


>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
          deaminase, PLP, threonine DEH L-threonine metabolism;
          HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
          2gn2_A*
          Length = 342

 Score = 30.2 bits (69), Expect = 0.093
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
          +   I  T M   N   + C   I  K E MQ   S K R A++ +    +  + KG++ 
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVA 93


>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
          PLP, lyase; HET: PLP; 2.50A {Mycobacterium
          tuberculosis}
          Length = 360

 Score = 30.0 bits (68), Expect = 0.11
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
          G TP++   N+       I  K+E + P  S KDR     + DA   G
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHG 84


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.12
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 42   QPCSSVKDRIAYSMIKDAEDKGLITPGKCFC 72
            QP  ++   +  +  +D + KGLI     F 
Sbjct: 1733 QPALTL---MEKAAFEDLKSKGLIPADATFA 1760


>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
           S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
           thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
          Length = 486

 Score = 28.2 bits (63), Expect = 0.49
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)

Query: 16  GHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDR---IAYSMIK 57
           G++ + +          +  +  K   +    S KD    +  S + 
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVN 175


>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A
          {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A*
          1v7c_A
          Length = 351

 Score = 28.0 bits (63), Expect = 0.63
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 16 GHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
          G TP++ L    +       + AK E + P  S KDR     +  A + G
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGG 76


>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
           ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
           ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
          Length = 773

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 16/46 (34%)

Query: 63  GLITPGKCFC------FQSTLITSTKP----------ILLLKILRV 92
           G   PGKCF       FQ  LI  + P          +L LK L +
Sbjct: 429 GRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGI 474


>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
          RSGI, structural genomics, lyase; HET: PLP; 2.15A
          {Thermus thermophilus} SCOP: c.79.1.1
          Length = 311

 Score = 26.3 bits (59), Expect = 2.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 17 HTPMVY---LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED-KGLIT 66
           TP++    L+ ++      +  K E +Q   S K R A S     E+ KGL+ 
Sbjct: 20 RTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA 70


>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
          dimer, PLP, isomerase; HET: PLP; 1.70A
          {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
          2zpu_A* 2zr8_A*
          Length = 323

 Score = 25.9 bits (58), Expect = 2.7
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 15 IGHTPMVY---LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAY----SMIKDAEDKGLIT 66
             TP++    +N       A +  K E  Q   + K R A      + +     G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT 79


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 4.7
 Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 9/38 (23%)

Query: 3  DKCEIKKDVTELIGHTPMVYLNNVVDGCVA-HIAAKLE 39
          +K  +KK    L  +          D   A  I A +E
Sbjct: 18 EKQALKKLQASLKLYAD--------DSAPALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,588,706
Number of extensions: 78482
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 29
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)